BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= Q14894
(314 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
2I99-A nrPDB 635 0.0
4BVA-A nrPDB 577 e-165
1OMO-A nrPDB 134 5e-32
5GZJ-A nrPDB 90 1e-18
4MP6-A nrPDB 85 3e-17
1X7D-A nrPDB 72 3e-13
4YHJ-A nrPDB 30 0.92
5NHS-A nrPDB 30 1.5
5BN1-A nrPDB 30 1.9
1GPJ-A nrPDB 29 2.1
2HK7-A nrPDB 29 2.2
4D3S-A nrPDB 29 2.7
1DIA-A nrPDB 29 2.8
2CVZ-A nrPDB 28 4.2
6OSU-A nrPDB 28 5.6
2HAE-A nrPDB 28 5.6
3GWQ-A nrPDB 28 6.4
1VJT-A nrPDB 28 6.8
3NV9-A nrPDB 28 7.6
>2I99-A nrPDB
Length = 312
Score = 635 bits (1639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/312 (100%), Positives = 312/312 (100%)
Query: 2 SRVPAFLSAAEVEEHLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYLGV 61
SRVPAFLSAAEVEEHLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYLGV
Sbjct: 1 SRVPAFLSAAEVEEHLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYLGV 60
Query: 62 MPAYSAAEDALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKRTA 121
MPAYSAAEDALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKRTA
Sbjct: 61 MPAYSAAEDALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKRTA 120
Query: 122 AVSAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTV 181
AVSAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTV
Sbjct: 121 AVSAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTV 180
Query: 182 QGEVRVCSSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASRPDWRELDDELM 241
QGEVRVCSSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASRPDWRELDDELM
Sbjct: 181 QGEVRVCSSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASRPDWRELDDELM 240
Query: 242 KEAVLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKPAHCEKTTVFKSLGMAVEDTV 301
KEAVLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKPAHCEKTTVFKSLGMAVEDTV
Sbjct: 241 KEAVLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKPAHCEKTTVFKSLGMAVEDTV 300
Query: 302 AAKLIYDSWSSG 313
AAKLIYDSWSSG
Sbjct: 301 AAKLIYDSWSSG 312
>4BVA-A nrPDB
Length = 335
Score = 577 bits (1486), Expect = e-165, Method: Compositional matrix adjust.
Identities = 278/314 (88%), Positives = 296/314 (94%), Gaps = 1/314 (0%)
Query: 1 MSRVPAFLSAAEVEEHLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYLG 60
M R PAFLSA EV++HLRSSSLLIPPLE ALANFS GP+GGVMQPVRTVVPV KHRG+LG
Sbjct: 23 MKRAPAFLSAEEVQDHLRSSSLLIPPLEAALANFSKGPDGGVMQPVRTVVPVAKHRGFLG 82
Query: 61 VMPAYSAAEDALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKRT 120
VMPAYSAAEDALTTKLVTFYE T+V PSHQA+VLLF+PSNG+LLAVMDGNVITAKRT
Sbjct: 83 VMPAYSAAEDALTTKLVTFYEGHSNTAV-PSHQASVLLFDPSNGSLLAVMDGNVITAKRT 141
Query: 121 AAVSAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADT 180
AAVSAIATK LKPP S+VLCILGAGVQAYSHYEIFTEQFSFKEVR+WNRT+ENAEKFA T
Sbjct: 142 AAVSAIATKLLKPPGSDVLCILGAGVQAYSHYEIFTEQFSFKEVRMWNRTRENAEKFAST 201
Query: 181 VQGEVRVCSSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASRPDWRELDDEL 240
VQG+VRVCSSVQEAV GADVIITVT+ATEPILFGEWVKPGAHINAVGASRPDWRELDDEL
Sbjct: 202 VQGDVRVCSSVQEAVTGADVIITVTMATEPILFGEWVKPGAHINAVGASRPDWRELDDEL 261
Query: 241 MKEAVLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKPAHCEKTTVFKSLGMAVEDT 300
M++AVLYVDS+EAALKESGDVLLSGA+IFAELGEVI G KPAHCEKTTVFKSLGMAVED
Sbjct: 262 MRQAVLYVDSREAALKESGDVLLSGADIFAELGEVISGAKPAHCEKTTVFKSLGMAVEDL 321
Query: 301 VAAKLIYDSWSSGK 314
VAAKL+YDSWSSGK
Sbjct: 322 VAAKLVYDSWSSGK 335
>1OMO-A nrPDB
Length = 322
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 144/268 (53%), Gaps = 22/268 (8%)
Query: 56 RGYLGVMPAYSAAEDALTTKLVTFYE---DRGITSVVPSHQATVLLFEPSNGTLLAVMDG 112
+G L MPA+ L K V + D+G+ P+ A ++L P G LAVMD
Sbjct: 48 KGDLRAMPAHLMGYAGL--KWVNSHPGNPDKGL----PTVMALMILNSPETGFPLAVMDA 101
Query: 113 NVITAKRTAAVSAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKE 172
T+ RT A IA K+L +S V +G G QAY E F EV+ ++ ++
Sbjct: 102 TYTTSLRTGAAGGIAAKYLARKNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREK 161
Query: 173 NAEKFADTVQGEVRVCSSVQ--EAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASR 230
A+KF + + + +SVQ E + DV++T T + +P++ EWV+ G HINA+GA
Sbjct: 162 AAKKFVSYCE-DRGISASVQPAEEASRCDVLVTTTPSRKPVVKAEWVEEGTHINAIGADG 220
Query: 231 PDWRELDDELMKEAVLYVDSQEAALKESGDV-------LLSGAEIFAELGEVIKGVKPAH 283
P +ELD E++K+A + VD E A K G++ ++ ++ A +GEVI G+K
Sbjct: 221 PGKQELDVEILKKAKIVVDDLEQA-KHGGEINVAVSKGVIGVEDVHATIGEVIAGLKDGR 279
Query: 284 --CEKTTVFKSLGMAVEDTVAAKLIYDS 309
E+ T+F S G+A++D AK++Y++
Sbjct: 280 ESDEEITIFDSTGLAIQDVAVAKVVYEN 307
>5GZJ-A nrPDB
Length = 359
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 111/247 (44%), Gaps = 7/247 (2%)
Query: 70 DALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKRTAAVSAIATK 129
D +T K V + +P+ TV ++ + G L A+MDG ++TA RT A SA+A++
Sbjct: 76 DHITLKTVGYSPANPARFGLPTILGTVARYDDTTGALTALMDGVLLTALRTGAASAVASR 135
Query: 130 FLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFAD--TVQGEVRV 187
L P S L ++G G QA + + + +W+ + E FA G
Sbjct: 136 LLARPDSHTLGLIGTGAQAVTQLHALSLVLPLQRALVWDTDPAHRESFARRAAFTGVSVE 195
Query: 188 CSSVQEAVAGADVIITVT---LATEPILFGEWVKPGAHINAVGASRPDWRELDDELMKEA 244
+ A ADVI T T + P+L V+ HINAVGA EL L++ A
Sbjct: 196 IAEPARIAAEADVISTATSVAVGQGPVLPDTGVREHLHINAVGADLVGKTELPLGLLERA 255
Query: 245 VLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKPAHCEKTT--VFKSLGMAVEDTVA 302
+ D E AL+E LS + +L + A + T VF S G A ED +A
Sbjct: 256 FVTADHPEQALREGECQQLSADRLGPQLAHLCADPAAAAGRQDTLSVFDSTGFAFEDALA 315
Query: 303 AKLIYDS 309
++ ++
Sbjct: 316 MEVFLEA 322
>4MP6-A nrPDB
Length = 339
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 151/333 (45%), Gaps = 38/333 (11%)
Query: 1 MSRVPAFLSAAEVEE-HLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYL 59
M+R +L+ +++E+ S + + L AL ++ +QP++ + G++
Sbjct: 4 MNREMLYLNRSDIEQAGGNHSQVYVDALTEAL---TAHAHNDFVQPLKPYLRQDPENGHI 60
Query: 60 G----VMPAYSAAEDALT-TKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNV 114
MP++ E A++ K + D + ++L +P +AVM+ ++
Sbjct: 61 ADRIIAMPSHIGGEHAISGIKWIGSKHDNPSKRNMERASGVIILNDPETNYPIAVMEASL 120
Query: 115 ITAKRTAAVSAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKE-VRIWNRTKEN 173
I++ RTAAVS IA K L + L I+G G+ + EQF E V ++++ E
Sbjct: 121 ISSMRTAAVSVIAAKHLAKKGFKDLTIIGCGLIGDKQLQSMLEQFDHIERVFVYDQFSEA 180
Query: 174 AEKFADTVQGE-----VRVCSSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGA 228
+F D Q + + +EAV+ +V+IT T+ +P + +W++ GA I+ +
Sbjct: 181 CARFVDRWQQQRPEINFIATENAKEAVSNGEVVITCTVTDQPYIEYDWLQKGAFISNISI 240
Query: 229 SRPDWRELDDELMKEAVLYVD-------SQEAALKESGDVL-----LSGAEIFAELGEVI 276
++ KE + D SQ K++ + L S + AELG+++
Sbjct: 241 M---------DVHKEVFIKADKVVVDDWSQCNREKKTINQLVLEGKFSKEALHAELGQLV 291
Query: 277 KGVKPAH--CEKTTVFKSLGMAVEDTVAAKLIY 307
G P ++ + +GMA+ED +A IY
Sbjct: 292 TGDIPGREDDDEIILLNPMGMAIEDISSAYFIY 324
>1X7D-A nrPDB
Length = 350
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 99/202 (49%), Gaps = 10/202 (4%)
Query: 114 VITAKRTAAVSAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKEN 173
+ TA RTAA S +A + L P++ + ++G G Q+ F + +E+ ++
Sbjct: 107 IATALRTAATSLMAAQALARPNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLA 166
Query: 174 AEKFADTVQG----EVRVCSSVQEAVAGADVIITVTL--ATEPILFGEWVKPGAHINAVG 227
K ++ +R SSV EAV G D+I TVT A I+ + ++PG H+NAVG
Sbjct: 167 TAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKAYATIITPDMLEPGMHLNAVG 226
Query: 228 ASRPDWRELDDELMKEAVLYVDSQEAALKESGDVLLSGAEI-FAELGEVIKGVKPAHC-- 284
P EL ++++ A ++V+ E + G++ A+ +L V++G
Sbjct: 227 GDCPGKTELHADVLRNARVFVE-YEPQTRIEGEIQQLPADFPVVDLWRVLRGETEGRQSD 285
Query: 285 EKTTVFKSLGMAVEDTVAAKLI 306
+ TVF S+G A+ED + +
Sbjct: 286 SQVTVFDSVGFALEDYTVLRYV 307
>4YHJ-A nrPDB
Length = 584
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 140 CILGAGVQAYSHYEIFTEQFSFKEV--RIWNRTKENAEKFADTVQGEVRV 187
C++ +Q +S ++ + E+ ++EV RI N T+E +EKF++ + R+
Sbjct: 374 CLIYEMIQGHSPFKKYKEKVKWEEVDQRIKNDTEEYSEKFSEDAKSICRM 423
>5NHS-A nrPDB
Length = 296
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 191 VQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASRPD 232
+Q V AD+++ V + ++ G+WVKPGA + VG +R D
Sbjct: 207 LQTHVRDADILV-VAVGRPGLIPGDWVKPGAVVIDVGINRLD 247
>5BN1-A nrPDB
Length = 219
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 215 EWVKPGAHINAVGASRPDWRELDDELMKEAVLYVDSQEAALK 256
+WV IN V WR+ D MKE +Y+D EA L+
Sbjct: 83 DWVSIMIGINDV------WRQYDLPFMKEKHVYLDEYEATLR 118
>1GPJ-A nrPDB
Length = 404
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 120 TAAVSAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFAD 179
+AAV +A + L + + ++GAG + + ++ + V + NRT E A + A
Sbjct: 152 SAAVE-LAERELGSLHDKTVLVVGAGEMGKTVAKSLVDR-GVRAVLVANRTYERAVELAR 209
Query: 180 TVQGEVRVCSSVQEAVAGADVIITVTLATEPILFGEWVK 218
+ GE + + +A +DV+++ T A P++ + V+
Sbjct: 210 DLGGEAVRFDELVDHLARSDVVVSATAAPHPVIHVDDVR 248
>2HK7-A nrPDB
Length = 269
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 139 LCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGA 198
+ +LGAG S I+ +V +WNRTKE A K A E V +S +E +
Sbjct: 126 ILVLGAG--GASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLE--VVNSPEEVIDKV 181
Query: 199 DVIITVT 205
VI+ T
Sbjct: 182 QVIVNTT 188
>4D3S-A nrPDB
Length = 293
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 163 EVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVT 205
E+ +WNRTK AE A+ +G S + AG V++++T
Sbjct: 33 ELTVWNRTKAKAEALAE--RGAAVADSPAEALRAGGPVLLSLT 73
>1DIA-A nrPDB
Length = 306
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 185 VRVCSS----VQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASR-PDWRELDDE 239
V C S + E V D+++ T E ++ GEW+KPGA + G + PD ++ +
Sbjct: 192 VTTCHSKTAHLDEEVNKGDILVVATGQPE-MVKGEWIKPGAIVIDCGINYVPDDKKPNGR 250
Query: 240 LMKEAVLYVDSQEAA 254
+ V Y +++E A
Sbjct: 251 KVVGDVAYDEAKERA 265
>2CVZ-A nrPDB
Length = 289
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 28/193 (14%)
Query: 137 EVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVA 196
E + +G G Y +F +WNRT E A + + E + E VA
Sbjct: 2 EKVAFIGLGAMGYPMAGHLARRFP---TLVWNRTFEKALRHQEEFGSE----AVPLERVA 54
Query: 197 GADVIITVTLATEPIL-----FGEWVKPGAH-INAVGASRPDWRELDDELMKEAVLYVD- 249
A VI T T + +++ G + ++A R L + L ++ V Y+D
Sbjct: 55 EARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDA 114
Query: 250 --SQEAALKESG--DVLLSGAEIFAELGEVIKGVKP--AHCEKTTVFKSLGM--AVEDTV 301
S + E+G V+L G E E ++ V+P A+ +K +G AV+
Sbjct: 115 PVSGGTSGAEAGTLTVMLGGPE------EAVERVRPFLAYAKKVVHVGPVGAGHAVKAIN 168
Query: 302 AAKLIYDSWSSGK 314
A L + W++G+
Sbjct: 169 NALLAVNLWAAGE 181
>6OSU-A nrPDB
Length = 427
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 16/142 (11%)
Query: 48 TVVPVTKHRGYLGVMPAYSAAEDALTTK-LVTFYEDRGITSVVPSHQATVLLFEPSNGTL 106
T++P++++ G Y A ++ + LVT + VV + AT+ L E GT
Sbjct: 87 TMIPISENAASTGGSKMYVKAGAKVSVRNLVTGMD------VVSGNDATIALAEYIGGTT 140
Query: 107 LAVMDGNVITAKRTAAVSAIATKFLKP---PSSEVLCIL-GAGVQAYSHYEIFTEQFSFK 162
A D TAK A+ T F P P E + A S+ F E +
Sbjct: 141 QAFTDLMNQTAK---AIGMNNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVY 197
Query: 163 EVR--IWNRTKENAEKFADTVQ 182
+ + +WN TK+++ AD Q
Sbjct: 198 DDKGLVWNATKQDSVSIADRKQ 219
>2HAE-A nrPDB
Length = 386
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 186 RVCSSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASRPDWRELDDELMKEAV 245
R+ ++ A+ GAD I V+ IL EW+K + + A E+D EL +EA
Sbjct: 242 RLSGDLETALEGADFFIGVSRGN--ILKPEWIKKMSRKPVIFALANPVPEIDPELAREAG 299
Query: 246 LYV 248
++
Sbjct: 300 AFI 302
>3GWQ-A nrPDB
Length = 426
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 209 EPILFGEWVKPGAHINAVGASRPDWRELDDEL-MKEAVLYVDSQEAALK 256
+P G + PG I A+R +W L++++ + AVLY D E LK
Sbjct: 13 DPYSKGLGMVPGTSIQLTDAARLEWNLLNEDVSLPAAVLYADRVEHNLK 61
>1VJT-A nrPDB
Length = 483
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 174 AEKFADTVQGEVRVC--SSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASRP 231
A K+ + + V++ SS+ EA+ GAD II +P + + VG
Sbjct: 63 ARKYVEELNSPVKIVKTSSLDEAIDGADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHG 122
Query: 232 DWRELDDE 239
+R +D +
Sbjct: 123 YYRGIDSQ 130
>3NV9-A nrPDB
Length = 487
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 190 SVQEAVAGADVIITVTLATEPILFGEWVK 218
S+ EA GADV+I+++ ++ EW+K
Sbjct: 287 SIAEACVGADVLISLSTPGPGVVKAEWIK 315
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
4BVA-A nrPDB 446 e-126
2I99-A nrPDB 445 e-125
4MP6-A nrPDB 372 e-103
1OMO-A nrPDB 314 4e-86
5GZJ-A nrPDB 282 1e-76
1X7D-A nrPDB 244 3e-65
Sequences not found previously or not previously below threshold:
1GPJ-A nrPDB 41 9e-04
6BKF-A nrPDB 36 0.028
2HAE-A nrPDB 35 0.035
4CPD-A nrPDB 34 0.094
1Y0Y-A nrPDB 33 0.17
4WJI-A nrPDB 33 0.18
5NHS-A nrPDB 33 0.20
5O2A-B nrPDB 32 0.29
4D48-A nrPDB 32 0.42
4A5O-A nrPDB 31 0.55
5VM2-A nrPDB 31 0.62
1DIA-A nrPDB 31 0.70
2E3D-A nrPDB 31 0.94
4CCZ-A nrPDB 31 1.1
3NV9-A nrPDB 30 1.4
5UIA-A nrPDB 29 2.1
2DVM-A nrPDB 29 2.3
3FR8-A nrPDB 29 3.1
2DUL-A nrPDB 28 5.6
>4BVA-A nrPDB
Length = 335
Score = 446 bits (1148), Expect = e-126, Method: Composition-based stats.
Identities = 278/314 (88%), Positives = 296/314 (94%), Gaps = 1/314 (0%)
Query: 1 MSRVPAFLSAAEVEEHLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYLG 60
M R PAFLSA EV++HLRSSSLLIPPLE ALANFS GP+GGVMQPVRTVVPV KHRG+LG
Sbjct: 23 MKRAPAFLSAEEVQDHLRSSSLLIPPLEAALANFSKGPDGGVMQPVRTVVPVAKHRGFLG 82
Query: 61 VMPAYSAAEDALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKRT 120
VMPAYSAAEDALTTKLVTFYE T+V PSHQA+VLLF+PSNG+LLAVMDGNVITAKRT
Sbjct: 83 VMPAYSAAEDALTTKLVTFYEGHSNTAV-PSHQASVLLFDPSNGSLLAVMDGNVITAKRT 141
Query: 121 AAVSAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADT 180
AAVSAIATK LKPP S+VLCILGAGVQAYSHYEIFTEQFSFKEVR+WNRT+ENAEKFA T
Sbjct: 142 AAVSAIATKLLKPPGSDVLCILGAGVQAYSHYEIFTEQFSFKEVRMWNRTRENAEKFAST 201
Query: 181 VQGEVRVCSSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASRPDWRELDDEL 240
VQG+VRVCSSVQEAV GADVIITVT+ATEPILFGEWVKPGAHINAVGASRPDWRELDDEL
Sbjct: 202 VQGDVRVCSSVQEAVTGADVIITVTMATEPILFGEWVKPGAHINAVGASRPDWRELDDEL 261
Query: 241 MKEAVLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKPAHCEKTTVFKSLGMAVEDT 300
M++AVLYVDS+EAALKESGDVLLSGA+IFAELGEVI G KPAHCEKTTVFKSLGMAVED
Sbjct: 262 MRQAVLYVDSREAALKESGDVLLSGADIFAELGEVISGAKPAHCEKTTVFKSLGMAVEDL 321
Query: 301 VAAKLIYDSWSSGK 314
VAAKL+YDSWSSGK
Sbjct: 322 VAAKLVYDSWSSGK 335
>2I99-A nrPDB
Length = 312
Score = 445 bits (1144), Expect = e-125, Method: Composition-based stats.
Identities = 312/312 (100%), Positives = 312/312 (100%)
Query: 2 SRVPAFLSAAEVEEHLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYLGV 61
SRVPAFLSAAEVEEHLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYLGV
Sbjct: 1 SRVPAFLSAAEVEEHLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYLGV 60
Query: 62 MPAYSAAEDALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKRTA 121
MPAYSAAEDALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKRTA
Sbjct: 61 MPAYSAAEDALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKRTA 120
Query: 122 AVSAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTV 181
AVSAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTV
Sbjct: 121 AVSAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTV 180
Query: 182 QGEVRVCSSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASRPDWRELDDELM 241
QGEVRVCSSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASRPDWRELDDELM
Sbjct: 181 QGEVRVCSSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASRPDWRELDDELM 240
Query: 242 KEAVLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKPAHCEKTTVFKSLGMAVEDTV 301
KEAVLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKPAHCEKTTVFKSLGMAVEDTV
Sbjct: 241 KEAVLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKPAHCEKTTVFKSLGMAVEDTV 300
Query: 302 AAKLIYDSWSSG 313
AAKLIYDSWSSG
Sbjct: 301 AAKLIYDSWSSG 312
>4MP6-A nrPDB
Length = 339
Score = 372 bits (954), Expect = e-103, Method: Composition-based stats.
Identities = 80/334 (23%), Positives = 151/334 (45%), Gaps = 38/334 (11%)
Query: 1 MSRVPAFLSAAEVEE-HLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYL 59
M+R +L+ +++E+ S + + L AL ++ +QP++ + G++
Sbjct: 4 MNREMLYLNRSDIEQAGGNHSQVYVDALTEAL---TAHAHNDFVQPLKPYLRQDPENGHI 60
Query: 60 G----VMPAYSAAEDALT-TKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNV 114
MP++ E A++ K + D + ++L +P +AVM+ ++
Sbjct: 61 ADRIIAMPSHIGGEHAISGIKWIGSKHDNPSKRNMERASGVIILNDPETNYPIAVMEASL 120
Query: 115 ITAKRTAAVSAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKE-VRIWNRTKEN 173
I++ RTAAVS IA K L + L I+G G+ + EQF E V ++++ E
Sbjct: 121 ISSMRTAAVSVIAAKHLAKKGFKDLTIIGCGLIGDKQLQSMLEQFDHIERVFVYDQFSEA 180
Query: 174 AEKFADTVQGE-----VRVCSSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGA 228
+F D Q + + +EAV+ +V+IT T+ +P + +W++ GA I+ +
Sbjct: 181 CARFVDRWQQQRPEINFIATENAKEAVSNGEVVITCTVTDQPYIEYDWLQKGAFISNISI 240
Query: 229 SRPDWRELDDELMKEAVLYVD-------SQEAALKESGDVL-----LSGAEIFAELGEVI 276
++ KE + D SQ K++ + L S + AELG+++
Sbjct: 241 M---------DVHKEVFIKADKVVVDDWSQCNREKKTINQLVLEGKFSKEALHAELGQLV 291
Query: 277 KGVKPAH--CEKTTVFKSLGMAVEDTVAAKLIYD 308
G P ++ + +GMA+ED +A IY
Sbjct: 292 TGDIPGREDDDEIILLNPMGMAIEDISSAYFIYQ 325
>1OMO-A nrPDB
Length = 322
Score = 314 bits (804), Expect = 4e-86, Method: Composition-based stats.
Identities = 100/317 (31%), Positives = 157/317 (49%), Gaps = 22/317 (6%)
Query: 4 VPAFLSAAEVEEHLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYLGVMP 63
L+ EVE L S + +E A F G P + + +G L MP
Sbjct: 2 ETLILTQEEVES-LISMDEAMNAVEEA---FRLYALGKAQMPPKVYLEF--EKGDLRAMP 55
Query: 64 AYSAAEDALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKRTAAV 123
A+ L K V + +P+ A ++L P G LAVMD T+ RT A
Sbjct: 56 AHLMGYAGL--KWVNSHPGNPDK-GLPTVMALMILNSPETGFPLAVMDATYTTSLRTGAA 112
Query: 124 SAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQG 183
IA K+L +S V +G G QAY E F EV+ ++ ++ A+KF +
Sbjct: 113 GGIAAKYLARKNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCE- 171
Query: 184 EVRVCSSVQ--EAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASRPDWRELDDELM 241
+ + +SVQ E + DV++T T + +P++ EWV+ G HINA+GA P +ELD E++
Sbjct: 172 DRGISASVQPAEEASRCDVLVTTTPSRKPVVKAEWVEEGTHINAIGADGPGKQELDVEIL 231
Query: 242 KEAVLYVDSQEAALKESGDV-------LLSGAEIFAELGEVIKGVKPAH--CEKTTVFKS 292
K+A + VD E A K G++ ++ ++ A +GEVI G+K E+ T+F S
Sbjct: 232 KKAKIVVDDLEQA-KHGGEINVAVSKGVIGVEDVHATIGEVIAGLKDGRESDEEITIFDS 290
Query: 293 LGMAVEDTVAAKLIYDS 309
G+A++D AK++Y++
Sbjct: 291 TGLAIQDVAVAKVVYEN 307
>5GZJ-A nrPDB
Length = 359
Score = 282 bits (722), Expect = 1e-76, Method: Composition-based stats.
Identities = 83/295 (28%), Positives = 126/295 (42%), Gaps = 11/295 (3%)
Query: 23 LIPPLETALANFSSGPEGGVMQPVRTVV-PVTKHRGYLGVMPAYSAAEDALTTKLVTFYE 81
+I L LA G + P+R + G MP + D +T K V +
Sbjct: 31 IIDRLTGGLAEIGRGERH--LSPLRGGLERSEPVPGIWEWMP-HREPGDHITLKTVGYSP 87
Query: 82 DRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKRTAAVSAIATKFLKPPSSEVLCI 141
+P+ TV ++ + G L A+MDG ++TA RT A SA+A++ L P S L +
Sbjct: 88 ANPARFGLPTILGTVARYDDTTGALTALMDGVLLTALRTGAASAVASRLLARPDSHTLGL 147
Query: 142 LGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADT--VQGEVRVCSSVQEAVAGAD 199
+G G QA + + + +W+ + E FA G + A AD
Sbjct: 148 IGTGAQAVTQLHALSLVLPLQRALVWDTDPAHRESFARRAAFTGVSVEIAEPARIAAEAD 207
Query: 200 VIITVT---LATEPILFGEWVKPGAHINAVGASRPDWRELDDELMKEAVLYVDSQEAALK 256
VI T T + P+L V+ HINAVGA EL L++ A + D E AL+
Sbjct: 208 VISTATSVAVGQGPVLPDTGVREHLHINAVGADLVGKTELPLGLLERAFVTADHPEQALR 267
Query: 257 ESGDVLLSGAEIFAELGEVIKGVKPAHCEKTT--VFKSLGMAVEDTVAAKLIYDS 309
E LS + +L + A + T VF S G A ED +A ++ ++
Sbjct: 268 EGECQQLSADRLGPQLAHLCADPAAAAGRQDTLSVFDSTGFAFEDALAMEVFLEA 322
>1X7D-A nrPDB
Length = 350
Score = 244 bits (623), Expect = 3e-65, Method: Composition-based stats.
Identities = 68/269 (25%), Positives = 122/269 (45%), Gaps = 15/269 (5%)
Query: 51 PVTKHR--GYLGVMPAYSAAEDALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLA 108
V H G + +MP A + K V + + + A +L + +G +
Sbjct: 45 RVASHSEVGVIELMP--VADKSRYAFKYVNGHPANTAR-NLHTVMAFGVLADVDSGYPVL 101
Query: 109 VMDGNVITAKRTAAVSAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWN 168
+ + + TA RTAA S +A + L P++ + ++G G Q+ F + +E+ ++
Sbjct: 102 LSELTIATALRTAATSLMAAQALARPNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYD 161
Query: 169 RTKENAEKFADTVQG----EVRVCSSVQEAVAGADVIITVTL--ATEPILFGEWVKPGAH 222
K ++ +R SSV EAV G D+I TVT A I+ + ++PG H
Sbjct: 162 TDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKAYATIITPDMLEPGMH 221
Query: 223 INAVGASRPDWRELDDELMKEAVLYVDSQEAALKESGDVLLSGAEI-FAELGEVIKGVKP 281
+NAVG P EL ++++ A ++V+ E + G++ A+ +L V++G
Sbjct: 222 LNAVGGDCPGKTELHADVLRNARVFVE-YEPQTRIEGEIQQLPADFPVVDLWRVLRGETE 280
Query: 282 AH--CEKTTVFKSLGMAVEDTVAAKLIYD 308
+ TVF S+G A+ED + +
Sbjct: 281 GRQSDSQVTVFDSVGFALEDYTVLRYVLQ 309
>1GPJ-A nrPDB
Length = 404
Score = 40.5 bits (93), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 121 AAVSAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADT 180
+A +A + L + + ++GAG + + ++ + V + NRT E A + A
Sbjct: 152 SAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDR-GVRAVLVANRTYERAVELARD 210
Query: 181 VQGEVRVCSSVQEAVAGADVIITVTLATEPILFGEWVKPGA 221
+ GE + + +A +DV+++ T A P++ + V+
Sbjct: 211 LGGEAVRFDELVDHLARSDVVVSATAAPHPVIHVDDVREAL 251
>6BKF-A nrPDB
Length = 621
Score = 35.5 bits (80), Expect = 0.028, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 23 LIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYLGVMPAYSAA-EDALTTKLVTFYE 81
+I L A+ G V QP+ P + G+L + P Y + D L +V Y
Sbjct: 415 VIDALNEAIDKREEGIM--VKQPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIVGGYW 472
Query: 82 DRGITSVVPSHQATVLLFEPSNG 104
+G + SH + +P G
Sbjct: 473 GKGSRGGMMSHFLCAVAEKPPPG 495
>2HAE-A nrPDB
Length = 386
Score = 35.1 bits (79), Expect = 0.035, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 57/173 (32%), Gaps = 16/173 (9%)
Query: 88 VVPSHQATVLLFEPSNGTLLAVMDGNVITAKRTAAVSAIATKFLKPPSSEVLCIL-GAGV 146
P + + D TA +A A K + EV ++ G G
Sbjct: 134 GAPKCFRILQRLSEEMNIPV-FHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGA 192
Query: 147 QAYSHYEIFTEQFSFKEVRIWNR-------TKENAEKF----ADTVQGEVRVCSSVQEAV 195
Y + F K V +R E + R+ ++ A+
Sbjct: 193 AGY-NIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETAL 251
Query: 196 AGADVIITVTLATEPILFGEWVKPGAHINAVGASRPDWRELDDELMKEAVLYV 248
GAD I V + IL EW+K + + A E+D EL +EA ++
Sbjct: 252 EGADFFIGV--SRGNILKPEWIKKMSRKPVIFALANPVPEIDPELAREAGAFI 302
>4CPD-A nrPDB
Length = 347
Score = 34.0 bits (76), Expect = 0.094, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 15/130 (11%)
Query: 108 AVMDGNVITAKRTAAVSAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIW 167
A+ G++++ TA I + P V ++GAG E+ + ++
Sbjct: 147 AIFAGDILS---TAYGGLIQGQL--RPGDSV-AVIGAGPVGLMAIEV-AQVLGASKILAI 199
Query: 168 NRTKENAEKFAD-------TVQGEVRVCSSVQEAVAGADVIITVTLATEPI-LFGEWVKP 219
+R E E+ A Q + G D+++ + L E V+P
Sbjct: 200 DRIPERLERAASLGAIPINAEQENPVRRVRSETNDEGPDLVLEAVGGAATLSLALEMVRP 259
Query: 220 GAHINAVGAS 229
G ++AVG
Sbjct: 260 GGRVSAVGVD 269
>1Y0Y-A nrPDB
Length = 353
Score = 33.2 bits (74), Expect = 0.17, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 216 WVKPGAHINAVGASRPDWRELDDELMKEAVLYVDSQEAALKESGDVLLSGAEIFAELGEV 275
W+ G I VGAS P + ++ K D + + + ++ ++G V
Sbjct: 106 WIDKGKFIYGVGASVPPHIQKPEDRKKAP----DWDQIFIDIGAESKEEAEDMGVKIGTV 161
Query: 276 IKGVKPAHCEKTTVFKSLGMAVEDTVAAKLIYD 308
I E+ + + +A +D +A I +
Sbjct: 162 ITWD--GRLERLGKHRFVSIAFDDRIAVYTILE 192
>4WJI-A nrPDB
Length = 293
Score = 32.8 bits (73), Expect = 0.18, Method: Composition-based stats.
Identities = 36/182 (19%), Positives = 63/182 (34%), Gaps = 20/182 (10%)
Query: 136 SEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAV 195
+ + ++G G+ S E+ + + E K A + R S EAV
Sbjct: 4 FQTIALIGIGLIGSSIARDIREKQLAGTIVV-TTRSEATLKRAGELGLGDRYTLSAAEAV 62
Query: 196 AGAD-VIITVTLATEPILFGEW---VKPGAHINAVGAS-RPDWRELDDELMKEAVLYVDS 250
GAD V+++V + + E +KPGA + VG++ ++ L K+
Sbjct: 63 EGADLVVVSVPVGASGAVAAEIAAHLKPGAIVTDVGSTKGSVIAQMAPHLPKDVHFVPGH 122
Query: 251 QEAALKESGDVLLSGAEIFAELGEVIKGVKPAHCEKTTVFKSLGMAVEDTVAAKLIYDSW 310
A + SG FA L + G E +L +++
Sbjct: 123 PIAGTEHSG-----PDAGFAGLF---------RGRWCILTPPAGTDEEAVARLRLFWETL 168
Query: 311 SS 312
S
Sbjct: 169 GS 170
>5NHS-A nrPDB
Length = 296
Score = 32.8 bits (73), Expect = 0.20, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 192 QEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASRPDWRELDDELMKEA 244
Q V AD+++ V + ++ G+WVKPGA + VG +R D L ++ EA
Sbjct: 208 QTHVRDADILV-VAVGRPGLIPGDWVKPGAVVIDVGINRLDDGRLVGDVGFEA 259
>5O2A-B nrPDB
Length = 289
Score = 32.4 bits (72), Expect = 0.29, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 170 TKENAEKFADTVQGEV--RVCSSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVG 227
+ E V R +++ V AD++I V + + G+W+K GA + VG
Sbjct: 174 RPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLI-VAVGKPGFIPGDWIKEGAIVIDVG 232
Query: 228 ASRPDWRELDDELM 241
+R + ++ +++
Sbjct: 233 INRLENGKVVGDVV 246
>4D48-A nrPDB
Length = 302
Score = 31.7 bits (70), Expect = 0.42, Method: Composition-based stats.
Identities = 13/91 (14%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Query: 216 WVKPGAHINAVGA-SRPDWRELDDELMKEAVLYVDSQEAALKESGDVLLSGAEIFAELGE 274
V+P A + A G + + + V+ +A S ++ + A++
Sbjct: 168 MVEPVADVTAYGVVDCQGAQLNPGDSAPMVGV-VEKPKADQAPSNLAVVGRYVLSADIWP 226
Query: 275 VIKGVKPAHCEKTTVFKSLGMAVEDTVAAKL 305
++ P ++ + S+ M +E
Sbjct: 227 LLAKTPPGAGDEIQLTDSIAMLMEKETVEAY 257
>4A5O-A nrPDB
Length = 286
Score = 31.3 bits (69), Expect = 0.55, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 180 TVQGEVRVCSSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASRPDWRELDDE 239
TV R + + V+ AD+++ V ++ GEW+K GA + VG +R L +
Sbjct: 187 TVTVTHRFTRDLADHVSRADLVV-VAAGKPGLVKGEWIKEGAIVIDVGINRQADGRLVGD 245
Query: 240 LMKEA 244
+ E
Sbjct: 246 VEYEV 250
>5VM2-A nrPDB
Length = 347
Score = 31.3 bits (69), Expect = 0.62, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 16/117 (13%)
Query: 110 MDGNVITAKRTAAVSAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNR 169
MD T AAV A + + ILGAG + + E+ + +
Sbjct: 143 MDTMEGTLVEPAAVGMHAAMLADVKPGKKIIILGAGCIGLMTLQA-CKCLGATEIAVVDV 201
Query: 170 TKEN---AEKFADTV------QGEVRVCSSVQEAVAGADVI-----ITVTLATEPIL 212
++ AE+ TV + + C E + GAD++ VT+ P L
Sbjct: 202 LEKRLAMAEQLGATVVINGAKEDTIARCQQFTEDM-GADIVFETAGSAVTVKQAPYL 257
>1DIA-A nrPDB
Length = 306
Score = 30.9 bits (68), Expect = 0.70, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 188 CSSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASRPDWRELDDELMKEAVLY 247
+ + E V D+++ T ++ GEW+KPGA + G + + + ++ V
Sbjct: 199 TAHLDEEVNKGDILVVAT-GQPEMVKGEWIKPGAIVIDCGINYVPDDKKPNG--RKVVGD 255
Query: 248 VDSQEAALKES 258
V EA + S
Sbjct: 256 VAYDEAKERAS 266
>2E3D-A nrPDB
Length = 302
Score = 30.5 bits (67), Expect = 0.94, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 33/90 (36%)
Query: 216 WVKPGAHINAVGASRPDWRELDDELMKEAVLYVDSQEAALKESGDVLLSGAEIFAELGEV 275
V+P A + A G EL V V+ +A + S ++ + A++ +
Sbjct: 168 MVEPVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPL 227
Query: 276 IKGVKPAHCEKTTVFKSLGMAVEDTVAAKL 305
+ P ++ + ++ M +E
Sbjct: 228 LAKTPPGAGDEIQLTDAIDMLIEKETVEAY 257
>4CCZ-A nrPDB
Length = 644
Score = 30.5 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 132 KPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGE 184
S + I+ AG +I E E IWN+ E EK Q +
Sbjct: 589 AIKSGMDMGIVNAGNLPVYD-DIHKELLQLCEDLIWNKDPEATEKLLRYAQTQ 640
>3NV9-A nrPDB
Length = 487
Score = 30.1 bits (66), Expect = 1.4, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 16/112 (14%)
Query: 123 VSAIATKFLKPPSSEV--LCILGAGVQAYSHY-EIFTEQFSFKEVRIWNR---------T 170
+ L + +GAG + I T K++ +++
Sbjct: 204 AGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGSLHNGRED 263
Query: 171 KENAEKFADTVQ----GEVRVCSSVQEAVAGADVIITVTLATEPILFGEWVK 218
+ +F + S+ EA GADV+I+++ ++ EW+K
Sbjct: 264 IKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISLSTPGPGVVKAEWIK 315
>5UIA-A nrPDB
Length = 345
Score = 29.4 bits (64), Expect = 2.1, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Query: 140 CILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGA- 198
++G G A + + + I +R + + D E R + G
Sbjct: 9 ALIGCGFFAVNQMHAWKDVKGAGIAAICDRDPKRLKLVGDQFGIERRYGDAAALFADGGF 68
Query: 199 ---DVIITV 204
D+ TV
Sbjct: 69 DFVDIATTV 77
>2DVM-A nrPDB
Length = 439
Score = 29.4 bits (64), Expect = 2.3, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 19/111 (17%)
Query: 127 ATKFLKPPSSE-VLCILGAGVQAYSHYEIFTE-------------QFSFKEVRIWNRTKE 172
A K + SE L + GAG ++ I TE + + E
Sbjct: 176 ALKVVGKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLE 235
Query: 173 N----AEKFADTVQGEVRVCSSVQEAVAGADVIITVTLATEPILFGEWVKP 219
GE QEA+ ADV+I+ T ++ +W++
Sbjct: 236 KLFPYRGWLLKKTNGENIE-GGPQEALKDADVLISFTRPGPGVIKPQWIEK 285
>3FR8-A nrPDB
Length = 525
Score = 29.0 bits (63), Expect = 3.1, Method: Composition-based stats.
Identities = 12/101 (11%), Positives = 37/101 (36%), Gaps = 6/101 (5%)
Query: 132 KPPSSEVLCILGAGVQAYSHYEIFTEQFSF--KEVRIWNRTKENAEKF----ADTVQGEV 185
+ + ++G G Q + + + + ++ + ++ ++ F A E
Sbjct: 50 AFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEES 109
Query: 186 RVCSSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAV 226
+ E V+G+D+++ + E + N++
Sbjct: 110 GTLGDIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSI 150
>2DUL-A nrPDB
Length = 378
Score = 27.8 bits (60), Expect = 5.6, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 20/54 (37%)
Query: 75 KLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKRTAAVSAIAT 128
K + D + H+ + G+ + +D + +AKR + AT
Sbjct: 112 KTIVINHDDANRLMAERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTAT 165
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.307 0.125 0.300
Lambda K H
0.267 0.0384 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,546,728
Number of Sequences: 36641
Number of extensions: 323358
Number of successful extensions: 1063
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1008
Number of HSP's gapped (non-prelim): 56
length of query: 314
length of database: 10,336,785
effective HSP length: 97
effective length of query: 217
effective length of database: 6,782,608
effective search space: 1471825936
effective search space used: 1471825936
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 59 (27.4 bits)