BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q13257
         (205 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

2V64-D nrPDB                                                          390   e-109
1DUJ-A nrPDB                                                          377   e-105
4AEZ-B nrPDB                                                          194   3e-50
4FJO-C nrPDB                                                           53   9e-08
6B44-C nrPDB                                                           30   0.81 
5AH5-A nrPDB                                                           30   0.83 
2IPI-A nrPDB                                                           29   1.3  
4LU1-A nrPDB                                                           28   2.5  
3GLJ-A nrPDB                                                           28   3.0  
1ZLI-A nrPDB                                                           28   3.4  
1KWM-A nrPDB                                                           27   4.6  
3W6Q-A nrPDB                                                           27   5.6  
1UOU-A nrPDB                                                           27   8.2  

>2V64-D nrPDB
          Length = 207

 Score =  390 bits (1002), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/204 (95%), Positives = 196/204 (96%), Gaps = 6/204 (2%)

Query: 2   ALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLEL 61
           ALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLEL
Sbjct: 10  ALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLEL 69

Query: 62  IKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQ 121
           IKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDK +       EKSQ
Sbjct: 70  IKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKGSG------EKSQ 123

Query: 122 KAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEV 181
           KAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEV
Sbjct: 124 KAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEV 183

Query: 182 RLRSFTTTIHKVNSMVAYKIPVND 205
           RLRSFTTTIHKVNSMVAYKIPVND
Sbjct: 184 RLRSFTTTIHKVNSMVAYKIPVND 207


>1DUJ-A nrPDB
          Length = 187

 Score =  377 bits (967), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/186 (99%), Positives = 185/186 (99%)

Query: 10  GITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVV 69
            ITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVV
Sbjct: 2   SITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVV 61

Query: 70  EQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIR 129
           EQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIR
Sbjct: 62  EQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIR 121

Query: 130 SVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTT 189
           SVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTT
Sbjct: 122 SVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTT 181

Query: 190 IHKVNS 195
           IHKVNS
Sbjct: 182 IHKVNS 187


>4AEZ-B nrPDB
          Length = 203

 Score =  194 bits (492), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 89/193 (46%), Positives = 140/193 (72%), Gaps = 1/193 (0%)

Query: 10  GITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVV 69
             + +GS+++V+EFF + +NSIL+QRGIYP+E F  V+KYGL +LV+ D E+  Y+  +V
Sbjct: 9   NFSAKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIV 68

Query: 70  EQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKD-DSAPREKSQKAIQDEI 128
            QL  W++   +QKL++VI++  SGE LERWQF++E   TA    +   ++ +  +Q EI
Sbjct: 69  SQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEI 128

Query: 129 RSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTT 188
           +++I QITATVTFLP LE  C+F++L+Y DKD  VP  W +S P+ + ++E+V+LRSF+T
Sbjct: 129 QALIAQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQVQLRSFST 188

Query: 189 TIHKVNSMVAYKI 201
           ++HK++  VAY++
Sbjct: 189 SMHKIDCQVAYRV 201


>4FJO-C nrPDB
          Length = 210

 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)

Query: 17  AEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWL 76
           A++++EF    ++ ILY R +YP   F + +KY + + ++   EL +Y+ + +  +K  L
Sbjct: 16  ADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLL 75

Query: 77  YKCSVQKLVVVISNIESGEVLERWQFDI 104
            K  V+K+VVVI + E   V E++ F+I
Sbjct: 76  EKNDVEKVVVVILDKEHRPV-EKFVFEI 102


>6B44-C nrPDB
          Length = 344

 Score = 30.0 bits (66), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 63  KYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFD 103
           +Y +N+      W  +   + + V I++I  GEV   W+FD
Sbjct: 139 RYAHNLANARFLWRNRVGAEAVEVRINHIRQGEVARAWRFD 179


>5AH5-A nrPDB
          Length = 822

 Score = 29.6 bits (65), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 163 VPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPVND 205
            P  WE+SGPQ + +  E   R FT  + ++ S  A +I  +D
Sbjct: 607 APINWEDSGPQAMRSYLERVCRLFTNNLDRLRSSSAIEICPDD 649


>2IPI-A nrPDB
          Length = 521

 Score = 29.3 bits (64), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 128 IRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFIT 176
           IR + R+I AT   +P+ +       + Y D DL V E+W  SG  + T
Sbjct: 441 IREIYREIFATTGGVPVPDDRTEGTFINYPDVDL-VDERWNTSGVPWYT 488


>4LU1-A nrPDB
          Length = 215

 Score = 28.1 bits (61), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 73  KDWLYKCSVQKLVVVISNIESGEVLERWQFDIEC-----DKTAKDDSAPREKSQKAIQDE 127
           ++ LY   + KL++  ++     +LE+ Q   EC     D+T + D +PR+   +  Q++
Sbjct: 14  RENLYFQGMPKLILASTSPWRRALLEKLQISFECAAPEVDETPRSDESPRQLVLRLAQEK 73

Query: 128 IRSV 131
            +S+
Sbjct: 74  AQSL 77


>3GLJ-A nrPDB
          Length = 401

 Score = 28.1 bits (61), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 106 CDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVT 140
           CD+T    +A  EK  KA+ D IR+ +  I A +T
Sbjct: 253 CDETYCGSAAESEKETKALADFIRNNLSSIKAYLT 287


>1ZLI-A nrPDB
          Length = 309

 Score = 27.7 bits (60), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 106 CDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVT 140
           CD+T    +A  EK  KA+ D IR+ +  I A +T
Sbjct: 160 CDETYCGPAAESEKETKALADFIRNKLSSIKAYLT 194


>1KWM-A nrPDB
          Length = 402

 Score = 27.3 bits (59), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 106 CDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVT 140
           CD+T    +A  EK  KA+ D IR+ +  I A +T
Sbjct: 253 CDETYCGPAAESEKETKALADFIRNKLSSIKAYLT 287


>3W6Q-A nrPDB
          Length = 620

 Score = 26.9 bits (58), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 5/39 (12%)

Query: 75  WLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDD 113
           WL+ C++ +L  +   + SG     W F+ +  K +KDD
Sbjct: 373 WLHHCNIDRLTAIWQTVNSGS----W-FNDDKSKVSKDD 406


>1UOU-A nrPDB
          Length = 474

 Score = 26.6 bits (57), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 126 DEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRS 185
           D I    R +TATV  LPL+  S     L+     LVV  K+   G     N E+   R 
Sbjct: 189 DGILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKF--GGAAVFPNQEQA--RE 244

Query: 186 FTTTIHKVNSMVAYKI 201
              T+  V + +  ++
Sbjct: 245 LAKTLVGVGASLGLRV 260


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

2V64-D nrPDB                                                          319   6e-88
1DUJ-A nrPDB                                                          298   1e-81
4AEZ-B nrPDB                                                          275   8e-75
4FJO-C nrPDB                                                          124   4e-29

Sequences not found previously or not previously below threshold:

6HTS-H nrPDB                                                           34   0.050
5AH5-A nrPDB                                                           32   0.22 
5VOY-O nrPDB                                                           28   3.3  
4LU1-A nrPDB                                                           28   3.3  
1WK8-A nrPDB                                                           28   3.8  
1ILE-A nrPDB                                                           27   4.6  
1V77-A nrPDB                                                           27   5.9  
1SR6-A nrPDB                                                           27   7.5  


CONVERGED!
>2V64-D nrPDB
          Length = 207

 Score =  319 bits (817), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 195/204 (95%), Positives = 196/204 (96%), Gaps = 6/204 (2%)

Query: 2   ALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLEL 61
           ALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLEL
Sbjct: 10  ALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLEL 69

Query: 62  IKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQ 121
           IKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDK +       EKSQ
Sbjct: 70  IKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKGSG------EKSQ 123

Query: 122 KAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEV 181
           KAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEV
Sbjct: 124 KAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEV 183

Query: 182 RLRSFTTTIHKVNSMVAYKIPVND 205
           RLRSFTTTIHKVNSMVAYKIPVND
Sbjct: 184 RLRSFTTTIHKVNSMVAYKIPVND 207


>1DUJ-A nrPDB
          Length = 187

 Score =  298 bits (763), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 185/186 (99%), Positives = 185/186 (99%)

Query: 10  GITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVV 69
            ITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVV
Sbjct: 2   SITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVV 61

Query: 70  EQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIR 129
           EQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIR
Sbjct: 62  EQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIR 121

Query: 130 SVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTT 189
           SVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTT
Sbjct: 122 SVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTT 181

Query: 190 IHKVNS 195
           IHKVNS
Sbjct: 182 IHKVNS 187


>4AEZ-B nrPDB
          Length = 203

 Score =  275 bits (704), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 89/193 (46%), Positives = 140/193 (72%), Gaps = 1/193 (0%)

Query: 10  GITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVV 69
             + +GS+++V+EFF + +NSIL+QRGIYP+E F  V+KYGL +LV+ D E+  Y+  +V
Sbjct: 9   NFSAKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIV 68

Query: 70  EQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKD-DSAPREKSQKAIQDEI 128
            QL  W++   +QKL++VI++  SGE LERWQF++E   TA    +   ++ +  +Q EI
Sbjct: 69  SQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEI 128

Query: 129 RSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTT 188
           +++I QITATVTFLP LE  C+F++L+Y DKD  VP  W +S P+ + ++E+V+LRSF+T
Sbjct: 129 QALIAQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQVQLRSFST 188

Query: 189 TIHKVNSMVAYKI 201
           ++HK++  VAY++
Sbjct: 189 SMHKIDCQVAYRV 201


>4FJO-C nrPDB
          Length = 210

 Score =  124 bits (310), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 17  AEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWL 76
           A++++EF    ++ ILY R +YP   F + +KY + + ++   EL +Y+ + +  +K  L
Sbjct: 16  ADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLL 75

Query: 77  YKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIRQIT 136
            K  V+K+VVVI + E   V E++ F+I         S   +     ++  + + I +I+
Sbjct: 76  EKNDVEKVVVVILDKEHRPV-EKFVFEI---TQPPLLSINSDSLLSHVEQLLAAFILKIS 131

Query: 137 ATVTFLPLLEVSCSFDLLIYT 157
                L      C+F +L++T
Sbjct: 132 VCDAVLDHNPPGCTFTVLVHT 152


>6HTS-H nrPDB
          Length = 607

 Score = 33.9 bits (76), Expect = 0.050,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 44/107 (41%), Gaps = 3/107 (2%)

Query: 28  INSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNV---VEQLKDWLYKCSVQKL 84
           ++ +LY + +       +  K  + L + +  EL  Y+  +   VEQ K  + +  V   
Sbjct: 324 LDRLLYVQELLEDGQMDQFHKALIELNMDSPEELQSYIQKLSIAVEQAKQKILQAEVNLE 383

Query: 85  VVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSV 131
           V V+ +      LE+ +  +E  ++  D      +    ++  + +V
Sbjct: 384 VDVVDSKPETPDLEQLEPSLEDVESMNDFDPLFSEETPGVEKPVTTV 430


>5AH5-A nrPDB
          Length = 822

 Score = 31.6 bits (70), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 164 PEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPVND 205
           P  WE+SGPQ + +  E   R FT  + ++ S  A +I  +D
Sbjct: 608 PINWEDSGPQAMRSYLERVCRLFTNNLDRLRSSSAIEICPDD 649


>5VOY-O nrPDB
          Length = 392

 Score = 27.7 bits (60), Expect = 3.3,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 3/118 (2%)

Query: 54  LVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFD---IECDKTA 110
           L   D ++   +  ++E L+      +     + I+N+   E LE +Q+     + DK+ 
Sbjct: 68  LSKVDNQIGASIGKIIEILQGLNETSTNAYRTLPINNMPVPEYLENFQWQTRKFKLDKSI 127

Query: 111 KDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWE 168
           KD           +  ++R+      +  T L   E   + DL + +  D+V PE + 
Sbjct: 128 KDLITLISNESSQLDADVRATYANYNSAKTNLAAAERKKTGDLSVRSLHDIVKPEDFV 185


>4LU1-A nrPDB
          Length = 215

 Score = 27.7 bits (60), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 76  LYKCSVQKLVVVISNIESGEVLERWQFDIEC-----DKTAKDDSAPREKSQKAIQDEIRS 130
           LY   + KL++  ++     +LE+ Q   EC     D+T + D +PR+   +  Q++ +S
Sbjct: 17  LYFQGMPKLILASTSPWRRALLEKLQISFECAAPEVDETPRSDESPRQLVLRLAQEKAQS 76

Query: 131 V 131
           +
Sbjct: 77  L 77


>1WK8-A nrPDB
          Length = 194

 Score = 27.7 bits (60), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 31  ILYQRGIYPSETFTRVQKYGLTLLVTTDLE 60
           I++Q   + +E     + YGL LL T D E
Sbjct: 123 IVHQAPAFGAEDLETARVYGLPLLKTVDEE 152


>1ILE-A nrPDB
          Length = 821

 Score = 27.3 bits (59), Expect = 4.6,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 31  ILYQRGIYPSETFTRVQKYGLTLLVTTDLE 60
           I++Q   + +E     + YGL LL T D E
Sbjct: 317 IVHQAPAFGAEDLETARVYGLPLLKTVDEE 346


>1V77-A nrPDB
          Length = 212

 Score = 26.9 bits (58), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 8  EQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNN 67
          E  I  + + E+  E+F   + SI +   +   +     ++YG   ++ ++ +    + +
Sbjct: 11 EMDIRDKEAYELAKEWFDEVVVSIKFNEEVDKEKLREARKEYGKVAILLSNPK-PSLVRD 69

Query: 68 VVEQLKDWLYKCSVQKLVVVISNIESG 94
           V++ K +L       L V+  +IE G
Sbjct: 70 TVQKFKSYLIYVESNDLRVIRYSIEKG 96


>1SR6-A nrPDB
          Length = 840

 Score = 26.6 bits (57), Expect = 7.5,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 18/49 (36%)

Query: 32  LYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCS 80
           LYQ  +  +  FT+  K           EL  Y  NV   +  WL K  
Sbjct: 551 LYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNK 599


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.317    0.135    0.363 

Lambda     K      H
   0.267   0.0406    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,022,760
Number of Sequences: 36641
Number of extensions: 244979
Number of successful extensions: 670
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 644
Number of HSP's gapped (non-prelim): 32
length of query: 205
length of database: 10,336,785
effective HSP length: 92
effective length of query: 113
effective length of database: 6,965,813
effective search space: 787136869
effective search space used: 787136869
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)