BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q12343 (284 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 5SVA-T nrPDB 577 e-165 5OQM-h nrPDB 504 e-143 5N9J-G nrPDB 54 8e-08 1DIA-A nrPDB 31 0.71 5GHK-A nrPDB 28 3.2 6GBN-A nrPDB 28 3.8 5WQL-B nrPDB 28 4.2 4F5V-A nrPDB 28 4.6 1XK8-A nrPDB 28 5.7 2ZFH-A nrPDB 27 7.0 2J0V-A nrPDB 27 7.7 1OSC-A nrPDB 27 7.9 3ZXU-A nrPDB 27 8.1 >5SVA-T nrPDB Length = 284 Score = 577 bits (1486), Expect = e-165, Method: Compositional matrix adjust. Identities = 284/284 (100%), Positives = 284/284 (100%) Query: 1 MSVQDTKAVEFSMGHIRSSSVSLVAEATSNTNSEDKLSKVQLYEDLCRYEDTLSKLVESV 60 MSVQDTKAVEFSMGHIRSSSVSLVAEATSNTNSEDKLSKVQLYEDLCRYEDTLSKLVESV Sbjct: 1 MSVQDTKAVEFSMGHIRSSSVSLVAEATSNTNSEDKLSKVQLYEDLCRYEDTLSKLVESV 60 Query: 61 DRFKPNLDIAKDLIRTDEALFENVKLLAEYDNIYRNLQKIDKDSEELDSKTRKILEILNE 120 DRFKPNLDIAKDLIRTDEALFENVKLLAEYDNIYRNLQKIDKDSEELDSKTRKILEILNE Sbjct: 61 DRFKPNLDIAKDLIRTDEALFENVKLLAEYDNIYRNLQKIDKDSEELDSKTRKILEILNE 120 Query: 121 CHDELKALPMLEQVEFEKNTILQQRSKINSTELLDYATKLSKFTKIPPTFDKGAVGPNNF 180 CHDELKALPMLEQVEFEKNTILQQRSKINSTELLDYATKLSKFTKIPPTFDKGAVGPNNF Sbjct: 121 CHDELKALPMLEQVEFEKNTILQQRSKINSTELLDYATKLSKFTKIPPTFDKGAVGPNNF 180 Query: 181 IWPAEDALRRGMLAMASLHSKELTRIPGEEVEETEVPTVPPSQSEEQKGQMAKKEGTPKT 240 IWPAEDALRRGMLAMASLHSKELTRIPGEEVEETEVPTVPPSQSEEQKGQMAKKEGTPKT Sbjct: 181 IWPAEDALRRGMLAMASLHSKELTRIPGEEVEETEVPTVPPSQSEEQKGQMAKKEGTPKT 240 Query: 241 DSFIFDGTAKEVGDEADNTKDKEKEENNDDALDLDLDLFDPDDF 284 DSFIFDGTAKEVGDEADNTKDKEKEENNDDALDLDLDLFDPDDF Sbjct: 241 DSFIFDGTAKEVGDEADNTKDKEKEENNDDALDLDLDLFDPDDF 284 >5OQM-h nrPDB Length = 300 Score = 504 bits (1297), Expect = e-143, Method: Compositional matrix adjust. Identities = 268/284 (94%), Positives = 268/284 (94%), Gaps = 16/284 (5%) Query: 1 MSVQDTKAVEFSMGHIRSSSVSLVAEATSNTNSEDKLSKVQLYEDLCRYEDTLSKLVESV 60 MSVQDTKAVEFSMGHIRSSSVSLVAEATSNTNSEDKLSKVQLYEDLCRYEDTLSKLVESV Sbjct: 1 MSVQDTKAVEFSMGHIRSSSVSLVAEATSNTNSEDKLSKVQLYEDLCRYEDTLSKLVESV 60 Query: 61 DRFKPNLDIAKDLIRTDEALFENVKLLAEYDNIYRNLQKIDKDSEELDSKTRKILEILNE 120 DRFKPNLDIAKDLIRTDEALFENVKLLAEYDNIYRNLQKIDKDSEELDSKTRKILEILNE Sbjct: 61 DRFKPNLDIAKDLIRTDEALFENVKLLAEYDNIYRNLQKIDKDSEELDSKTRKILEILNE 120 Query: 121 CHDEL----------------KALPMLEQVEFEKNTILQQRSKINSTELLDYATKLSKFT 164 CHDEL KALPMLEQVEFEKNTILQQRSKINSTELLDYATKLSKFT Sbjct: 121 CHDELXXXXXXXXXXXXXXXXKALPMLEQVEFEKNTILQQRSKINSTELLDYATKLSKFT 180 Query: 165 KIPPTFDKGAVGPNNFIWPAEDALRRGMLAMASLHSKELTRIPGEEVEETEVPTVPPSQS 224 KIPPTFDKGAVGPNNFIWPAEDALRRGMLAMASLHSKELTRIPGEEVEETEVPTVPPSQS Sbjct: 181 KIPPTFDKGAVGPNNFIWPAEDALRRGMLAMASLHSKELTRIPGEEVEETEVPTVPPSQS 240 Query: 225 EEQKGQMAKKEGTPKTDSFIFDGTAKEVGDEADNTKDKEKEENN 268 EEQKGQMAKKEGTPKTDSFIFDGTAKEVGDEADNTKDKEKEENN Sbjct: 241 EEQKGQMAKKEGTPKTDSFIFDGTAKEVGDEADNTKDKEKEENN 284 >5N9J-G nrPDB Length = 239 Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 7/125 (5%) Query: 73 LIRTDEALFENVKLLAEYDNIYRNLQKIDKDSEELDSKTRKILEILNECHDELKALPMLE 132 LI +L ++K L + Y N +++ + L + +++ + +C E+ ++ Sbjct: 30 LIENWTSLVGHLKTLHSLISNYTNGRELQNEISSLLKQDKELDLQIQDCMREMTSI---Y 86 Query: 133 QVEFEKNTILQQRSKINSTELLDYATKLSKFTKIPPTFD----KGAVGPNNFIWPAEDAL 188 K ++R K+N+ LLDY KLSKF+ PP ++ + A P ++ WP+ED + Sbjct: 87 DTHLPKTVSGRKRQKVNAETLLDYGRKLSKFSSAPPGYNPETGQDAKAPVHYPWPSEDQM 146 Query: 189 RRGML 193 R+ +L Sbjct: 147 RKTLL 151 >1DIA-A nrPDB Length = 306 Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 6/87 (6%) Query: 48 RYEDTLSKLVESVDRFKPNLDIAKDLIRTDEALFENVKL-LAEYDNIYRNLQKIDKDSEE 106 R ++ +++L E V F P L I + R D L+ NVKL AE I K+ + + E Sbjct: 19 RLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTE 78 Query: 107 LDSKTRKILEILNE---CHDELKALPM 130 S+ K + LNE H L LP+ Sbjct: 79 --SEVMKYITSLNEDSTVHGFLVQLPL 103 >5GHK-A nrPDB Length = 584 Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 8/83 (9%) Query: 44 EDLCRYEDTLSKLVESVDRFKPNLDIAKDLIRTDEALFENVKLLAEYDNIYRNLQKIDKD 103 E C +D + + +D FKP +D ++L++T+ LFE L EY L + K Sbjct: 358 EKCCATDDPPTCYAKVLDEFKPLVDEPQNLVKTNCELFEK---LGEYGFQNALLVRYTKK 414 Query: 104 SEELDSKT-----RKILEILNEC 121 + ++ + T RK+ ++ +C Sbjct: 415 APQVSTPTLVEVSRKLGKVGTKC 437 >6GBN-A nrPDB Length = 438 Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust. Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 5/69 (7%) Query: 29 SNTNSEDKLSKVQLYEDLCRYEDTLSKLVESVDRFKPNLDIAK-----DLIRTDEALFEN 83 S++ S +++++L+E+ +YE+ + L +S+D L ++K D++ D+A + Sbjct: 365 SSSFSNQVIAQLELWENSSKYENKVYTLPKSLDEKVARLHLSKIDVELDILSADQAAYIG 424 Query: 84 VKLLAEYDN 92 V + Y N Sbjct: 425 VTVDGPYKN 433 >5WQL-B nrPDB Length = 278 Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%) Query: 9 VEFSMGHIRSSSV--SLVAEATSNTNSEDKLSKVQLYEDLCRYEDTLSKLVESVDRFK 64 VEF +G+I ++ L A+AT NT+ + LS+ Y L +Y +L L + FK Sbjct: 187 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFY--LGKYYLSLGDLDSATALFK 242 >4F5V-A nrPDB Length = 584 Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 32/157 (20%) Query: 46 LCRYEDTLSKLVESVDRFKPNLDIAKDLIRTDEALFENVKLLAEYDNIYRNLQKIDKDSE 105 C +D + + +D F+P +D K+L++ + L+E L +Y+ L + K Sbjct: 360 CCATDDPHACYAKVLDEFQPLVDEPKNLVKQNCELYEQ---LGDYNFQNALLVRYTKKVP 416 Query: 106 ELDSKT-----RKILEILNEC--HDELKALPMLE----------QVEFEKNTILQQRSKI 148 ++ + T R + ++ ++C H E + LP +E V EK + ++ +K Sbjct: 417 QVSTPTLVEISRSLGKVGSKCCKHPEAERLPCVEDYLSVVLNRLCVLHEKTPVSEKVTKC 476 Query: 149 NSTELLDYATKLSKFTKIPPTFDKGAVGPNNFIWPAE 185 S L+D P F A+GP+ P E Sbjct: 477 CSESLVDRR----------PCF--SALGPDETYVPKE 501 >1XK8-A nrPDB Length = 147 Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 13/84 (15%) Query: 65 PNLDIAKDLIR--TDEALFENVKLLAEYDNIYRNLQKIDKDSEEL------DSKTRKILE 116 PN +AK++ R ++ L V L+ + +IY KI++DSE L S + + Sbjct: 44 PNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTD 103 Query: 117 ILNECHD----ELKALPMLEQVEF 136 + H E+ ALP +EQ F Sbjct: 104 FVRSVHPYEVAEVIALP-VEQGNF 126 >2ZFH-A nrPDB Length = 179 Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 13/92 (14%) Query: 65 PNLDIAKDLIR--TDEALFENVKLLAEYDNIYRNLQKIDKDSEEL------DSKTRKILE 116 PN +AK++ R ++ L V L+ + +IY KI++DSE L S + + Sbjct: 76 PNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTD 135 Query: 117 ILNECHD----ELKALPMLEQVEFEKNTILQQ 144 + H E+ ALP +EQ F ++Q Sbjct: 136 FVRSVHPYEVAEVIALP-VEQGNFPYLQWVRQ 166 >2J0V-A nrPDB Length = 212 Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Query: 49 YEDTLSKLVESVDRFKPNLDIAKDLIRTDEALFENVKLLAEYDNIYRNLQ 98 YE+ L K + + RF PN+ I L+ T L ++ LA++ N+ + Q Sbjct: 96 YENVLKKWMPELRRFAPNVPIV--LVGTKLDLRDDKGYLADHTNVITSTQ 143 >1OSC-A nrPDB Length = 126 Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 12/78 (15%) Query: 65 PNLDIAKDLIR--TDEALFENVKLLAEYDNIYRNLQKIDKDSEEL------DSKTRKILE 116 PN +AK++ R ++ L V L+ + +IY KI++DSE L S + E Sbjct: 31 PNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTE 90 Query: 117 ILNECHD----ELKALPM 130 + H E+ ALP+ Sbjct: 91 FVRSVHPYEVAEVIALPV 108 >3ZXU-A nrPDB Length = 296 Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%) Query: 87 LAEYDNIYRNLQKIDKDSEELDSKTRKILEILNECHDELKALPMLEQVEF 136 L +Y NI+++ Q I KD++ DS I++ N C+ +L L + +V+F Sbjct: 177 LPKYINIHQHWQLITKDTDTSDS---NIMKFANLCYKDL--LKVHSRVQF 221 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 5SVA-T nrPDB 485 e-138 5OQM-h nrPDB 422 e-119 5N9J-G nrPDB 184 3e-47 Sequences not found previously or not previously below threshold: 5ZSN-B nrPDB 38 0.004 5IJN-G nrPDB 34 0.089 5C3L-B nrPDB 32 0.38 4D0L-A nrPDB 30 0.90 6MB7-A nrPDB 30 0.98 6CKB-A nrPDB 30 1.1 6BXJ-A nrPDB 30 1.1 5AJ4-Bj nrPDB 30 1.5 1M1J-A nrPDB 29 1.7 5IJN-C nrPDB 29 1.8 5FWP-E nrPDB 29 2.4 2I1J-A nrPDB 29 3.6 1SDD-A nrPDB 27 7.3 2NCA-A nrPDB 27 8.8 CONVERGED! >5SVA-T nrPDB Length = 284 Score = 485 bits (1249), Expect = e-138, Method: Composition-based stats. Identities = 284/284 (100%), Positives = 284/284 (100%) Query: 1 MSVQDTKAVEFSMGHIRSSSVSLVAEATSNTNSEDKLSKVQLYEDLCRYEDTLSKLVESV 60 MSVQDTKAVEFSMGHIRSSSVSLVAEATSNTNSEDKLSKVQLYEDLCRYEDTLSKLVESV Sbjct: 1 MSVQDTKAVEFSMGHIRSSSVSLVAEATSNTNSEDKLSKVQLYEDLCRYEDTLSKLVESV 60 Query: 61 DRFKPNLDIAKDLIRTDEALFENVKLLAEYDNIYRNLQKIDKDSEELDSKTRKILEILNE 120 DRFKPNLDIAKDLIRTDEALFENVKLLAEYDNIYRNLQKIDKDSEELDSKTRKILEILNE Sbjct: 61 DRFKPNLDIAKDLIRTDEALFENVKLLAEYDNIYRNLQKIDKDSEELDSKTRKILEILNE 120 Query: 121 CHDELKALPMLEQVEFEKNTILQQRSKINSTELLDYATKLSKFTKIPPTFDKGAVGPNNF 180 CHDELKALPMLEQVEFEKNTILQQRSKINSTELLDYATKLSKFTKIPPTFDKGAVGPNNF Sbjct: 121 CHDELKALPMLEQVEFEKNTILQQRSKINSTELLDYATKLSKFTKIPPTFDKGAVGPNNF 180 Query: 181 IWPAEDALRRGMLAMASLHSKELTRIPGEEVEETEVPTVPPSQSEEQKGQMAKKEGTPKT 240 IWPAEDALRRGMLAMASLHSKELTRIPGEEVEETEVPTVPPSQSEEQKGQMAKKEGTPKT Sbjct: 181 IWPAEDALRRGMLAMASLHSKELTRIPGEEVEETEVPTVPPSQSEEQKGQMAKKEGTPKT 240 Query: 241 DSFIFDGTAKEVGDEADNTKDKEKEENNDDALDLDLDLFDPDDF 284 DSFIFDGTAKEVGDEADNTKDKEKEENNDDALDLDLDLFDPDDF Sbjct: 241 DSFIFDGTAKEVGDEADNTKDKEKEENNDDALDLDLDLFDPDDF 284 >5OQM-h nrPDB Length = 300 Score = 422 bits (1085), Expect = e-119, Method: Composition-based stats. Identities = 268/284 (94%), Positives = 268/284 (94%), Gaps = 16/284 (5%) Query: 1 MSVQDTKAVEFSMGHIRSSSVSLVAEATSNTNSEDKLSKVQLYEDLCRYEDTLSKLVESV 60 MSVQDTKAVEFSMGHIRSSSVSLVAEATSNTNSEDKLSKVQLYEDLCRYEDTLSKLVESV Sbjct: 1 MSVQDTKAVEFSMGHIRSSSVSLVAEATSNTNSEDKLSKVQLYEDLCRYEDTLSKLVESV 60 Query: 61 DRFKPNLDIAKDLIRTDEALFENVKLLAEYDNIYRNLQKIDKDSEELDSKTRKILEILNE 120 DRFKPNLDIAKDLIRTDEALFENVKLLAEYDNIYRNLQKIDKDSEELDSKTRKILEILNE Sbjct: 61 DRFKPNLDIAKDLIRTDEALFENVKLLAEYDNIYRNLQKIDKDSEELDSKTRKILEILNE 120 Query: 121 CHDEL----------------KALPMLEQVEFEKNTILQQRSKINSTELLDYATKLSKFT 164 CHDEL KALPMLEQVEFEKNTILQQRSKINSTELLDYATKLSKFT Sbjct: 121 CHDELXXXXXXXXXXXXXXXXKALPMLEQVEFEKNTILQQRSKINSTELLDYATKLSKFT 180 Query: 165 KIPPTFDKGAVGPNNFIWPAEDALRRGMLAMASLHSKELTRIPGEEVEETEVPTVPPSQS 224 KIPPTFDKGAVGPNNFIWPAEDALRRGMLAMASLHSKELTRIPGEEVEETEVPTVPPSQS Sbjct: 181 KIPPTFDKGAVGPNNFIWPAEDALRRGMLAMASLHSKELTRIPGEEVEETEVPTVPPSQS 240 Query: 225 EEQKGQMAKKEGTPKTDSFIFDGTAKEVGDEADNTKDKEKEENN 268 EEQKGQMAKKEGTPKTDSFIFDGTAKEVGDEADNTKDKEKEENN Sbjct: 241 EEQKGQMAKKEGTPKTDSFIFDGTAKEVGDEADNTKDKEKEENN 284 >5N9J-G nrPDB Length = 239 Score = 184 bits (467), Expect = 3e-47, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 100/224 (44%), Gaps = 33/224 (14%) Query: 73 LIRTDEALFENVKLLAEYDNIYRNLQKIDKDSEELDSKTRKILEILNECHDELKALPMLE 132 LI +L ++K L + Y N +++ + L + +++ + +C E+ ++ Sbjct: 30 LIENWTSLVGHLKTLHSLISNYTNGRELQNEISSLLKQDKELDLQIQDCMREMTSI---Y 86 Query: 133 QVEFEKNTILQQRSKINSTELLDYATKLSKFTKIPPTFD----KGAVGPNNFIWPAEDAL 188 K ++R K+N+ LLDY KLSKF+ PP ++ + A P ++ WP+ED + Sbjct: 87 DTHLPKTVSGRKRQKVNAETLLDYGRKLSKFSSAPPGYNPETGQDAKAPVHYPWPSEDQM 146 Query: 189 RRGML-----AMASLHSKELTRI-----PGEEVEETEVPTVPPSQSEEQKGQMAKKEGTP 238 R+ +L +M S +++ P + +++ E+K +M P Sbjct: 147 RKTLLFQFSTSMVPNLSATASQLFSEQPPKTNEPTETETEIDANKAVEEKTKM----NYP 202 Query: 239 KTDSFIFDGTAKEVGDEADNTKDKEKEENNDDALDLDLDLFDPD 282 + +F T +E ++KE E + + DLFDP+ Sbjct: 203 ASPTF----TTQE--------ENKEVESPANKDVFAGFDLFDPE 234 >5ZSN-B nrPDB Length = 823 Score = 38.2 bits (87), Expect = 0.004, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 62/149 (41%), Gaps = 23/149 (15%) Query: 7 KAVEFSMGHIRSSSVSLVAEATSNTNSEDKLSKVQLYEDL-----------CRY---EDT 52 K ++ S+ I S SLV +SN + + + Q+ E L CR+ E + Sbjct: 402 KVIDLSVNKISPSGDSLVPRGSSNARTSVESYEPQVLEQLYYFRYDKYARSCRFKNKEAS 461 Query: 53 LSKLVESVDRFKPNLDIAKDLI-RTDEALFENVKLL------AEYDNIYRNLQKID--KD 103 + + ES ++ LD++K+ I + F+++ L + N + + Sbjct: 462 FTSVQESCYKYGQTLDLSKNSIFFIKSSDFQHLSFLKCLNLSGNLISQTLNGSEFQPLAE 521 Query: 104 SEELDSKTRKILEILNECHDELKALPMLE 132 LD ++ + + +EL+ L +L+ Sbjct: 522 LRYLDFSNNRLDLLHSTAFEELRKLEVLD 550 >5IJN-G nrPDB Length = 599 Score = 33.6 bits (75), Expect = 0.089, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 4/89 (4%) Query: 96 NLQKIDKDS----EELDSKTRKILEILNECHDELKALPMLEQVEFEKNTILQQRSKINST 151 NLQK K+ EE+ + K + + E LK L L ++NT+ + KI + Sbjct: 257 NLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANGIQRNTLNIDKLKIETA 316 Query: 152 ELLDYATKLSKFTKIPPTFDKGAVGPNNF 180 + L A + K PP P ++ Sbjct: 317 QELKNAEIALRTQKTPPGLQHEYAAPADY 345 >5C3L-B nrPDB Length = 142 Score = 31.7 bits (70), Expect = 0.38, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 1/97 (1%) Query: 85 KLLAEYDNIYRNLQKIDKDS-EELDSKTRKILEILNECHDELKALPMLEQVEFEKNTILQ 143 +LL + ++ K K EE+ + K + + E LK L + ++N + Sbjct: 18 QLLCQDVENFQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSVASSGLQRNALAI 77 Query: 144 QRSKINSTELLDYATKLSKFTKIPPTFDKGAVGPNNF 180 + KI + E L A + K PP P ++ Sbjct: 78 DKLKIETAEELKNAEIALRTQKTPPGLQHENTAPADY 114 >4D0L-A nrPDB Length = 566 Score = 30.5 bits (67), Expect = 0.90, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 12/125 (9%) Query: 90 YDNIYRNLQKIDKDSEELDSKTRKILE--ILNECHD--ELKALPMLEQVEFEKNTILQQR 145 Y + I +K RK++ L H EL +L + QR Sbjct: 97 LLGAYSSDMHISTQRHSRGTKLRKLILSDELKPAHRKRELPSLSPAPDTGLSPSKRTHQR 156 Query: 146 SKINSTELLDYATKLSKFTKIPPTFDKGAVGPNNFIWPAEDALRRGMLAMASLHSKELTR 205 SK ++T + ++ L + P ++ P E + ++A+ K L Sbjct: 157 SKSDATASISLSSNLKRTAANPKVENEDE--PVRL--APEREFIKSLMAIG----KRLAT 208 Query: 206 IPGEE 210 +P +E Sbjct: 209 LPTKE 213 >6MB7-A nrPDB Length = 274 Score = 30.1 bits (66), Expect = 0.98, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 11/99 (11%) Query: 135 EFEKNTILQQRSKINSTELLDYATKLSKFTKIPP-TFDKGAVGPNNFIWPAEDALRRGML 193 EF + T RS L+ K FT P + G P + +A + ++ Sbjct: 109 EFLRTTPGTLRSGNPGASLVALGAKAEWFTADHPLDYGYGEGSPLAKL---VEAGGKVLM 165 Query: 194 AMASL-------HSKELTRIPGEEVEETEVPTVPPSQSE 225 A L H++ L IPG+ ++ EVP P+ ++ Sbjct: 166 LGAPLDTLTLLHHAEHLADIPGKRIKRIEVPFATPTGTQ 204 >6CKB-A nrPDB Length = 466 Score = 30.1 bits (66), Expect = 1.1, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 35/77 (45%) Query: 66 NLDIAKDLIRTDEALFENVKLLAEYDNIYRNLQKIDKDSEELDSKTRKILEILNECHDEL 125 N+D AKD+IR + ++ + + +++ K + ++ K+ ++ E ++ Sbjct: 229 NIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLFTELQKKI 288 Query: 126 KALPMLEQVEFEKNTIL 142 ++ LE + + L Sbjct: 289 RSKVELEVRDLPEELSL 305 >6BXJ-A nrPDB Length = 625 Score = 30.1 bits (66), Expect = 1.1, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 35/77 (45%) Query: 66 NLDIAKDLIRTDEALFENVKLLAEYDNIYRNLQKIDKDSEELDSKTRKILEILNECHDEL 125 N+D AKD+IR + ++ + + +++ K + ++ K+ ++ E ++ Sbjct: 229 NIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLFTELQKKI 288 Query: 126 KALPMLEQVEFEKNTIL 142 ++ LE + + L Sbjct: 289 RSKVELEVRDLPEELSL 305 >5AJ4-Bj nrPDB Length = 279 Score = 29.7 bits (65), Expect = 1.5, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 7/119 (5%) Query: 54 SKLVESVDRFKPNLDIAKDLIRTDEALFENVKLLAEYDNIYRNLQKIDKDSEELDSKTRK 113 S L E D + N+ +A+DL E F + KL A K D + R Sbjct: 103 SDLYEEED--EQNILLAQDLEDMWEQKFLHFKLGARL----TEADKKDDRTSLHRKLDRN 156 Query: 114 ILEILNECHDELKALPMLEQVEFEKNTILQQRSKINSTELLDYATKLSKFTKIPPTFDK 172 ++ ++ E + + + ML Q +++ L+Q ++ L + + P K Sbjct: 157 LILLVREKLGD-QDIWMLPQSDWQPGETLRQTAERTLATLSENNMEAKFLGNAPCGHYK 214 >1M1J-A nrPDB Length = 491 Score = 29.3 bits (64), Expect = 1.7, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 77/208 (37%), Gaps = 30/208 (14%) Query: 41 QLYEDLCRYEDTLSKLVESVDRFKPNLDIAKDLIRTDEALFENVKLLAEYDNIYRNLQKI 100 QL + +Y+ + +VE+++ KP L+ A+ L + +V + R + + Sbjct: 73 QLADSQNKYKTSNRVIVETINILKPGLEGAQQLDEN----YGHVST-----ELRRRIVTL 123 Query: 101 DKDSEELDSKTRKILEILNECHDELKALPMLEQVEFEKNTILQQRS---KINSTELLDYA 157 + ++ + + + E E+K L + ++ RS +++ + Sbjct: 124 KQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIRACKGSCARSFDYQVDKEGYDNIQ 183 Query: 158 TKLSKFTKIP--PTFD------------KGAVGPNNFIWPAEDALRRGMLAMASLHSKEL 203 L++ + I P F K + P +F ++ AM++ ++ + Sbjct: 184 KHLTQASSIDMHPDFQTTTLSTLKMRPLKDSNVPEHFKLKPSPEMQ----AMSAFNNIKQ 239 Query: 204 TRIPGEEVEETEVPTVPPSQSEEQKGQM 231 ++ E E V S G++ Sbjct: 240 MQVVLERPETDHVAEARGDSSPSHTGKL 267 >5IJN-C nrPDB Length = 819 Score = 29.3 bits (64), Expect = 1.8, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 63/147 (42%), Gaps = 17/147 (11%) Query: 72 DLIRTDEALFENVKLLAEYDNIYRNLQKIDKDSEELDSKTRKILEILNECHDELKALPML 131 +L++ E L + ++E ++ RNLQ+I + E L ++R + E D +KA +L Sbjct: 8 ELLQQAEQLAAETEGISELPHVERNLQEIQQAGERL--RSRTLTRTSQETAD-VKASVLL 64 Query: 132 EQVEFEKNTILQQRSKINSTELLDYATKLSKFTKIPPTFDKGAVG-----PNNFIWPAED 186 + + I Q+ +++ F + P D G +N + A + Sbjct: 65 GSRGLDISHISQRLESLSAAT---------TFEPLEPVKDTDIQGFLKNEKDNALLSAIE 115 Query: 187 ALRRGMLAMASLHSKELTRIPGEEVEE 213 R+ MA + +E + E+V++ Sbjct: 116 ESRKRTFGMAEEYHRESMLVEWEQVKQ 142 >5FWP-E nrPDB Length = 378 Score = 29.0 bits (63), Expect = 2.4, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 11/122 (9%) Query: 97 LQKIDKDSEELDSKTRKILEILNECHDELKALPMLEQVEFEKNTILQQRSKINSTELLDY 156 +++ K+ EELD R+ + EC +LK L + E + E + + ++ E + Sbjct: 40 MEQFQKEKEELDRGCRECKRKVAECQRKLKELEVAEGGKAELERLQAEAQQLRKEE-RSW 98 Query: 157 ATKLSKFTKIPPTFDKGAVGPNNFIWPAEDALRRGMLAMASLHSKELTRIPGEEVEETEV 216 KL + K K P N ++D + M+ E T EEV E + Sbjct: 99 EQKLEEMRK------KEKSMPWNVDTLSKDGFSKSMVNT----KPEKTEEDSEEVREQKH 148 Query: 217 PT 218 T Sbjct: 149 KT 150 >2I1J-A nrPDB Length = 575 Score = 28.6 bits (62), Expect = 3.6, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 17/98 (17%) Query: 49 YEDTLSKLVESVDRFKPNLDIAKDLIRTDEALFENVKLLAEYDNIYRNLQKIDKDSEELD 108 Y+D L ++ E ++R + NL A+D+I E L+++ EEL+ Sbjct: 340 YQDRLRQMQEEMERSQANLLEAQDMILRLE----------------EQLRQLQAAKEELE 383 Query: 109 SKTRKILEILNECHDELKALPMLEQVEFEKNTILQQRS 146 + ++ ++ +E K + E+ + E +Q Sbjct: 384 QRQNELQAMMQR-LEETKNMEAAERQKLEDEIRAKQEE 420 >1SDD-A nrPDB Length = 306 Score = 27.4 bits (59), Expect = 7.3, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 125 LKALPMLEQVEFEKNTILQQRSKINSTELLDYATKLSKFTKIPPT-FDKGAVGPNNF 180 + + P L + F + Q KI++ L+ + + T P + ++ P +F Sbjct: 232 MSSGPELFSIHFNGQVLEQNHHKISAITLVSATSTTANMTVSPEGRWTIASLIPRHF 288 >2NCA-A nrPDB Length = 128 Score = 27.0 bits (58), Expect = 8.8, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%) Query: 97 LQKIDKDSEELDSKTRKILEILNECHDELKALPMLEQVEFEKNTILQQRSKINSTE 152 +++ K+ EELD R+ + EC +LK L + E + E + + ++ E Sbjct: 42 MEQFQKEKEELDRGCRECKRKVAECQRKLKELEVAEGGKAELERLQAEAQQLRKEE 97 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.307 0.127 0.335 Lambda K H 0.267 0.0396 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,046,029 Number of Sequences: 36641 Number of extensions: 392314 Number of successful extensions: 1204 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 59 Number of HSP's that attempted gapping in prelim test: 1170 Number of HSP's gapped (non-prelim): 86 length of query: 284 length of database: 10,336,785 effective HSP length: 96 effective length of query: 188 effective length of database: 6,819,249 effective search space: 1282018812 effective search space used: 1282018812 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 58 (27.0 bits)