BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q10588 (318 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 1ISF-A nrPDB 553 e-158 3I9N-A nrPDB 175 2e-44 2EG9-A nrPDB 169 1e-42 5BNF-A nrPDB 155 2e-38 3ZWO-A nrPDB 153 7e-38 3P5S-A nrPDB 145 2e-35 3KOU-A nrPDB 144 6e-35 6GH2-A nrPDB 33 0.23 3EOQ-A nrPDB 32 0.49 4CIU-A nrPDB 30 1.6 3A3N-A nrPDB 30 1.6 2E1P-A nrPDB 30 1.9 2KGW-A nrPDB 30 2.0 4NFU-A nrPDB 29 2.2 2L26-A nrPDB 28 3.7 5OFO-C nrPDB 28 6.2 6DEU-A nrPDB 28 6.8 3P45-A nrPDB 28 7.1 4HVA-A nrPDB 27 8.4 3QNW-A nrPDB 27 8.6 >1ISF-A nrPDB Length = 265 Score = 553 bits (1424), Expect = e-158, Method: Compositional matrix adjust. Identities = 261/265 (98%), Positives = 262/265 (98%) Query: 33 RWRGEGTSAHLRDIFLGRCAEYRALLSPEQRNKNCTAIWEAFKVALDKDPCSVLPSDYDL 92 RWR EGTSAHLRDIFLGRCAEYRALLSPEQRNK+CTAIWEAFKVALDKDPCSVLPSDYDL Sbjct: 1 RWRAEGTSAHLRDIFLGRCAEYRALLSPEQRNKDCTAIWEAFKVALDKDPCSVLPSDYDL 60 Query: 93 FINLSRHSIPRDKSLFWENSHLLVNSFADNTRRFMPLSDVLYGRVADFLSWCRQKNDSGL 152 FI LSRHSIPRDKSLFWENSHLLVNSFADNTRRFMPLSDVLYGRVADFLSWCRQK DSGL Sbjct: 61 FITLSRHSIPRDKSLFWENSHLLVNSFADNTRRFMPLSDVLYGRVADFLSWCRQKADSGL 120 Query: 153 DYQSCPTSEDCENNPVDSFWKRASIQYSKDSSGVIHVMLNGSEPTGAYPIKGFFADYEIP 212 DYQSCPTSEDCENNPVDSFWKRASIQYSKDSSGVIHVMLNGSEPTGAYPIKGFFADYEIP Sbjct: 121 DYQSCPTSEDCENNPVDSFWKRASIQYSKDSSGVIHVMLNGSEPTGAYPIKGFFADYEIP 180 Query: 213 NLQKEKITRIEIWVMHEIGGPNVESCGEGSMKVLEKRLKDMGFQYSCINDYRPVKLLQCV 272 NLQKEKITRIEIWVMHEIGGPNVESCGEGSMKVLEKRLKDMGFQYSCINDYRPVKLLQCV Sbjct: 181 NLQKEKITRIEIWVMHEIGGPNVESCGEGSMKVLEKRLKDMGFQYSCINDYRPVKLLQCV 240 Query: 273 DHSTHPDCALKSAAAATQRKAPSLY 297 DHSTHPDCALKSAAAATQRKAPSLY Sbjct: 241 DHSTHPDCALKSAAAATQRKAPSLY 265 >3I9N-A nrPDB Length = 262 Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 94/258 (36%), Positives = 138/258 (53%), Gaps = 8/258 (3%) Query: 30 ARARWR----GEGTSAHLRDIFLGRCAEYRALLSPEQRNKNCTAIWEAFKVA-LDKDPCS 84 A ARWR G GT+ + L RC +Y + PE R+ +C ++W+AFK A + K PC Sbjct: 4 AEARWRQTWSGPGTTKRFPETVLARCVKYTEI-HPEMRHVDCQSVWDAFKGAFISKHPCD 62 Query: 85 VLPSDYDLFINLSRHSIPRDKSLFWENSHLLVNSFADNTRRFMPLSDVLYGRVADFLSWC 144 + DY + L ++P +K L W L + F R L D L G +AD L+WC Sbjct: 63 ITEEDYQPLMKLGTQTVPCNKILLWSRIKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWC 122 Query: 145 RQKNDSGLDYQSCPT-SEDCENNPVDSFWKRASIQYSKDSSGVIHVMLNGSEPTGAYPIK 203 + + S ++YQSCP +DC NNPV FWK S ++++ + V+HVML+GS + + Sbjct: 123 GEFDTSKINYQSCPDWRKDCSNNPVSVFWKTVSRRFAEAACDVVHVMLDGSR-SKIFDKD 181 Query: 204 GFFADYEIPNLQKEKITRIEIWVMHEIGGPNVESCGEGSMKVLEKRLKDMGFQYSCINDY 263 F E+ NLQ EK+ +E WV+H + + C + ++K LE + Q+SC N Y Sbjct: 182 STFGSVEVHNLQPEKVQTLEAWVIHGGREDSRDLCQDPTIKELESIISKRNIQFSCKNIY 241 Query: 264 RPVKLLQCVDHSTHPDCA 281 RP K LQCV + C Sbjct: 242 RPDKFLQCVKNPEDSSCT 259 >2EG9-A nrPDB Length = 253 Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 88/237 (37%), Positives = 133/237 (56%), Gaps = 3/237 (1%) Query: 34 WRGEGTSAHLRDIFLGRCAEYRALLSPEQRNKNCTAIWEAFKVA-LDKDPCSVLPSDYDL 92 W GE T+ H DIFLGRC Y +L PE R++NC I FK A + K+PC + DY Sbjct: 18 WTGEPTTKHFSDIFLGRCLIYTQILRPEMRDQNCQEILSTFKGAFVSKNPCDITREDYAP 77 Query: 93 FINLSRHSIPRDKSLFWENSHLLVNSFADNTRRFMPLSDVLYGRVADFLSWCRQKNDSGL 152 + L +IP DK+LFW S L + + + L D L G +AD L WC + S + Sbjct: 78 LVKLVTQTIPCDKTLFWSKSKHLAHQYTWIQGKMFTLEDTLLGYIADDLRWCGDPSTSDM 137 Query: 153 DYQSCPT-SEDCENNPVDSFWKRASIQYSKDSSGVIHVMLNGSEPTGAYPIKGFFADYEI 211 +Y SCP SE+C NNP+ FWK S ++++D+ GV+ VML+GS Y F E+ Sbjct: 138 NYVSCPHWSENCPNNPITMFWKVISQKFAEDACGVVQVMLDGSLREPFYK-DSTFGSVEV 196 Query: 212 PNLQKEKITRIEIWVMHEIGGPNVESCGEGSMKVLEKRLKDMGFQYSCINDYRPVKL 268 +L K+ +++ WVMH+I G + +C S+ L+ ++ ++C+++YRP + Sbjct: 197 FSLDPNKVHKLQAWVMHDIEGASSNACSSSSLNELKMIVQKRNMIFACVDNYRPARF 253 >5BNF-A nrPDB Length = 232 Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 129/233 (55%), Gaps = 2/233 (0%) Query: 34 WRGEGTSAHLRDIFLGRCAEYRALLSPEQRNKNCTAIWEAFKVA-LDKDPCSVLPSDYDL 92 W G+G++ ++I L RC Y ++ PE +++C I +AF A + KDPCS DYDL Sbjct: 1 WNGKGSTVDFQEIILRRCYTYIRVVQPELGDRDCQKIKKAFTDAFISKDPCSAREEDYDL 60 Query: 93 FINLSRHSIPRDKSLFWENSHLLVNSFADNTRRFMPLSDVLYGRVADFLSWCRQKNDSGL 152 + L ++P DK++FW + L + + + L + L G +AD LSWC + S + Sbjct: 61 LMKLGHQTVPCDKTVFWSKTKELAHQYTKTQKGLFTLENTLLGYIADDLSWCGKVGSSEI 120 Query: 153 DYQSCPTSEDCENNPVDSFWKRASIQYSKDSSGVIHVMLNGSEPTGAYPIKGFFADYEIP 212 + +SCP +C +N V FW S ++++++ G++ V LNGS + A+ F E+ Sbjct: 121 NLESCPDRRNCNSNFVSVFWNLLSKRFAENACGMVQVFLNGS-ISNAFDKTSTFGRVEVH 179 Query: 213 NLQKEKITRIEIWVMHEIGGPNVESCGEGSMKVLEKRLKDMGFQYSCINDYRP 265 +LQ K+ ++ WV+H+ G ++C S+ L+ L+ +++C +YRP Sbjct: 180 SLQPSKVHTLKAWVIHDSGKTPRDTCSGSSINELQLILRGKNIKFTCQENYRP 232 >3ZWO-A nrPDB Length = 259 Score = 153 bits (387), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 134/249 (53%), Gaps = 8/249 (3%) Query: 40 SAHLRDIFLGRCAEYRAL----LSPEQRNKNCTAIWEAFKVALD-KDPCSVLPSDYDLFI 94 + L ++FLGRC +Y + P R+ +C+A+W+ F A K+PC + Y F Sbjct: 5 TRELENVFLGRCKDYEITRYLDILPRVRS-DCSALWKDFFKAFSFKNPCDLDLGSYKDFF 63 Query: 95 NLSRHSIPRDKSLFWENSHLLVNSFADNTRRFMPLSDVLYGRVADFLSWCRQKNDSGLDY 154 ++ +P++K +FW + + +A+ R+++ L D L G + + L WC Q+ + G + Sbjct: 64 TSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNE 123 Query: 155 QSCPTSEDCENNPVDSFWKRASIQYSKDSSGVIHVMLNGSEP-TGAYPIKGFFADYEIPN 213 + CP + C +SFW AS Y+ + G + M++GS P AY FF YE+PN Sbjct: 124 KVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPN 183 Query: 214 LQKEKITRIEIWVMHEIGGPNVESCGEGSMKVLEKRLKDMGFQYSCINDYRPVKLLQCVD 273 L K+TR+++ V+H +G +E CG GS+ LEK +K F + C+ + R V L C D Sbjct: 184 LT-NKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSD 242 Query: 274 HSTHPDCAL 282 + +C L Sbjct: 243 NPNARECRL 251 >3P5S-A nrPDB Length = 278 Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 87/277 (31%), Positives = 135/277 (48%), Gaps = 16/277 (5%) Query: 6 CAASRLLQLLLQLLLLLLLLAAGGARA----------RWRGEGTSAHLRDIFLGRCAEYR 55 C R LL L+ GGA RW G G++A + I RC Y Sbjct: 4 CCTPRKKLCWCVLLFFLVAGITGGAIGIYKWHYSGLNRWHGAGSTADFQKIIQERCDTYT 63 Query: 56 ALLSPEQRNKNCTAIWEAFKVA-LDKDPCSVLPSDYDLFINLSRHSIPRDKSLFWENSHL 114 + P R++NC AI +AF A + KDPC DY+ INL+ ++P + +FW + Sbjct: 64 QTIRPGSRSRNCQAIRQAFMSAFISKDPCKATKEDYNSLINLAPPTVPCGQQVFWSKTKE 123 Query: 115 LVNSFADNTRRFMPLSDVLYGRVADFLSWCRQKNDSGLDYQSCPT-SEDCENNPVDSFWK 173 L + +A RR M L D L G +AD L WC + S L+ SCP +DC N + FW+ Sbjct: 124 LAHEYAKR-RRLMTLEDTLLGYLADGLRWCGEPGSSDLNIWSCPDWRKDCRTNYLSVFWE 182 Query: 174 RASIQYSKDSSGVIHVMLNGSEPTGAYPIKGFFADYEIPNLQKEKITRIEIWVMHEIGGP 233 S ++++ + + V+LNGS A+ F E PNL+ + +E W++H+ G P Sbjct: 183 VLSERFAESACNTVRVVLNGSLEN-AFDSMSIFGRVEAPNLRPQ--VELEAWLVHDTGKP 239 Query: 234 NVESCGEGSMKVLEKRLKDMGFQYSCINDYRPVKLLQ 270 +SC S++ L+ L ++ C+++ + LQ Sbjct: 240 PSDSCSGSSIRKLKSILDGRNVKFRCMDNLSRDQFLQ 276 >3KOU-A nrPDB Length = 247 Score = 144 bits (362), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 126/240 (52%), Gaps = 6/240 (2%) Query: 33 RWRGEGTSAHLRDIFLGRCAEYRALLSPEQRNKNCTAIWEAFKVA-LDKDPCSVLPSDYD 91 RW G G++A + I RC Y + P R++NC AI +AF A + KDPC DY+ Sbjct: 10 RWHGAGSTADFQKIIQERCDTYTQTIRPGSRSRNCQAIRQAFMSAFISKDPCKATKEDYN 69 Query: 92 LFINLSRHSIPRDKSLFWENSHLLVNSFADNTRRFMPLSDVLYGRVADFLSWCRQKNDSG 151 INL+ ++P + +FW + L + +A RR M L D L G +AD L WC + S Sbjct: 70 SLINLAPPTVPCGQQVFWSKTKELAHEYAKR-RRLMTLEDTLLGYLADGLRWCGEPGSSD 128 Query: 152 LDYQSCPT-SEDCENNPVDSFWKRASIQYSKDSSGVIHVMLNGSEPTGAYPIKGFFADYE 210 L+ SCP +DC N + FW+ S ++++ + + V+LNGS A+ F E Sbjct: 129 LNIWSCPDWRKDCRTNYLSVFWEVLSERFAESACNTVRVVLNGS-LENAFDSMSIFGRVE 187 Query: 211 IPNLQKEKITRIEIWVMHEIGGPNVESCGEGSMKVLEKRLKDMGFQYSCINDYRPVKLLQ 270 PNL+ + +E W++H+ G P +SC S++ L+ L ++ C+++ + LQ Sbjct: 188 APNLRPQ--VELEAWLVHDTGKPPSDSCSGSSIRKLKSILDGRNVKFRCMDNLSRDQFLQ 245 >6GH2-A nrPDB Length = 913 Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 41 AHLRDIFLGRCAEYRALLSPEQRNKNCTAIWEAFKVALDKDPCSVLPSDYDLFINLSRHS 100 ++ RD+F+ RC E A +PEQ NK TA + ++ + + +L + F N+ H Sbjct: 461 SYFRDVFVKRCRERDASWTPEQGNKLLTADGQIYEGTILE---HILLQNIVPFFNVGEHG 517 Query: 101 IPRDKSLFWENS 112 + + W + Sbjct: 518 NIKLEGADWNDG 529 >3EOQ-A nrPDB Length = 406 Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 4/88 (4%) Query: 147 KNDSG----LDYQSCPTSEDCENNPVDSFWKRASIQYSKDSSGVIHVMLNGSEPTGAYPI 202 K +SG L++ ED + V+ + R QY+ +S V P AY + Sbjct: 39 KEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSEEATVYYGAVLPEFAYDL 98 Query: 203 KGFFADYEIPNLQKEKITRIEIWVMHEI 230 G FA P L++E ++ ++ EI Sbjct: 99 LGLFAKLLRPALREEDFQTEKLVILEEI 126 >4CIU-A nrPDB Length = 727 Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Query: 213 NLQKEKITRI-EIWVMHEIGGPNVESCGEGSMKVLEKRLKDMGFQ 256 N + E I RI E+ V H +G ++ S + +K L KRL++ G++ Sbjct: 606 NFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYE 650 >3A3N-A nrPDB Length = 329 Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 13/76 (17%) Query: 225 WVMHEIGGPNVESCGEGSMKVLEKRLKDMGFQYS----------CINDYR---PVKLLQC 271 W + + P+V S +GS+ V++ + D G Y C++ R KL C Sbjct: 19 WGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVSTKLRDC 78 Query: 272 VDHSTHPDCALKSAAA 287 D + H + + AA Sbjct: 79 ADQNGHGTHVIGTIAA 94 >2E1P-A nrPDB Length = 398 Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 13/76 (17%) Query: 225 WVMHEIGGPNVESCGEGSMKVLEKRLKDMGFQYS----------CINDYR---PVKLLQC 271 W + + P+V S +GS+ V++ + D G Y C++ R KL C Sbjct: 88 WGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVSTKLRDC 147 Query: 272 VDHSTHPDCALKSAAA 287 D + H + + AA Sbjct: 148 ADQNGHGTHVIGTIAA 163 >2KGW-A nrPDB Length = 129 Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 9/69 (13%) Query: 76 VALDKDPCSVLPSDYDLFINLSRHSIPRDKSLFWENSHLLVNSFADNTRR---FMPLSDV 132 +A D S++P+DY++ ++ DK ++ + +N + DNT +PLS Sbjct: 26 IAFGNDGASLIPADYEILNRVA------DKLKACPDARVTINGYTDNTGSEGINIPLSAQ 79 Query: 133 LYGRVADFL 141 VAD+L Sbjct: 80 RAKIVADYL 88 >4NFU-A nrPDB Length = 636 Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust. Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 8/128 (6%) Query: 178 QYSKDSSGVIHVMLNGSEPTGAYPIKGFFADYEIPNLQKEKITRIEIWVMHEIGGPNVES 237 +Y K+ +G V++ +P+ + K FF + + K+ R++ M +IG +V + Sbjct: 42 RYHKEEAGA--VVIFAFQPS--FSEKDFFDPDNKSSFGEIKLNRVQFPCMRKIGKGDVAT 97 Query: 238 CGEGSMKVLEKRLK-DMGFQYSCINDYRPVKLLQCVDHSTHPDCALKSAAAATQR---KA 293 E +K LE + FQ S R K + HS+ A+ + ++ + Sbjct: 98 VNEAFLKNLEAVIDPRTSFQASVEMAVRSRKQIVFTGHSSGGATAILATVWYLEKYFIRN 157 Query: 294 PSLYTEQR 301 P++Y E R Sbjct: 158 PNVYLEPR 165 >2L26-A nrPDB Length = 284 Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 9/69 (13%) Query: 76 VALDKDPCSVLPSDYDLFINLSRHSIPRDKSLFWENSHLLVNSFADNTRR---FMPLSDV 132 +A D S++P+DY++ ++ DK ++ + +N + DNT +PLS Sbjct: 173 IAFGNDGASLIPADYEILNRVA------DKLKACPDARVTINGYTDNTGSEGINIPLSAQ 226 Query: 133 LYGRVADFL 141 VAD+L Sbjct: 227 RAKIVADYL 235 >5OFO-C nrPDB Length = 871 Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Query: 217 EKITRI-EIWVMHEIGGPNVESCGEGSMKVLEKRLKDMGFQ 256 E I RI E+ V H +G ++ S + +K L KRL++ G++ Sbjct: 756 EFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYE 796 >6DEU-A nrPDB Length = 302 Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust. Identities = 10/24 (41%), Positives = 15/24 (62%) Query: 246 LEKRLKDMGFQYSCINDYRPVKLL 269 L +R D+GF+ C ND + +LL Sbjct: 75 LTRRFSDLGFEVKCFNDLKAEELL 98 >3P45-A nrPDB Length = 179 Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust. Identities = 10/24 (41%), Positives = 15/24 (62%) Query: 246 LEKRLKDMGFQYSCINDYRPVKLL 269 L +R D+GF+ C ND + +LL Sbjct: 74 LTRRFSDLGFEVKCFNDLKAEELL 97 >4HVA-A nrPDB Length = 265 Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust. Identities = 10/24 (41%), Positives = 15/24 (62%) Query: 246 LEKRLKDMGFQYSCINDYRPVKLL 269 L +R D+GF+ C ND + +LL Sbjct: 51 LTRRFSDLGFEVKCFNDLKAEELL 74 >3QNW-A nrPDB Length = 156 Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust. Identities = 10/24 (41%), Positives = 15/24 (62%) Query: 246 LEKRLKDMGFQYSCINDYRPVKLL 269 L +R D+GF+ C ND + +LL Sbjct: 51 LTRRFSDLGFEVKCFNDLKAEELL 74 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 1ISF-A nrPDB 428 e-120 3P5S-A nrPDB 390 e-109 3I9N-A nrPDB 372 e-103 5BNF-A nrPDB 354 2e-98 3KOU-A nrPDB 351 2e-97 2EG9-A nrPDB 349 9e-97 3ZWO-A nrPDB 332 1e-91 Sequences not found previously or not previously below threshold: 4B7A-A nrPDB 35 0.033 6GH2-A nrPDB 32 0.29 4QQ1-A nrPDB 32 0.52 1WNH-A nrPDB 28 4.9 5UXH-A nrPDB 28 5.8 2AOV-A nrPDB 28 6.1 6FYJ-A nrPDB 28 7.1 5H7V-A nrPDB 28 7.3 CONVERGED! >1ISF-A nrPDB Length = 265 Score = 428 bits (1101), Expect = e-120, Method: Composition-based stats. Identities = 261/265 (98%), Positives = 262/265 (98%) Query: 33 RWRGEGTSAHLRDIFLGRCAEYRALLSPEQRNKNCTAIWEAFKVALDKDPCSVLPSDYDL 92 RWR EGTSAHLRDIFLGRCAEYRALLSPEQRNK+CTAIWEAFKVALDKDPCSVLPSDYDL Sbjct: 1 RWRAEGTSAHLRDIFLGRCAEYRALLSPEQRNKDCTAIWEAFKVALDKDPCSVLPSDYDL 60 Query: 93 FINLSRHSIPRDKSLFWENSHLLVNSFADNTRRFMPLSDVLYGRVADFLSWCRQKNDSGL 152 FI LSRHSIPRDKSLFWENSHLLVNSFADNTRRFMPLSDVLYGRVADFLSWCRQK DSGL Sbjct: 61 FITLSRHSIPRDKSLFWENSHLLVNSFADNTRRFMPLSDVLYGRVADFLSWCRQKADSGL 120 Query: 153 DYQSCPTSEDCENNPVDSFWKRASIQYSKDSSGVIHVMLNGSEPTGAYPIKGFFADYEIP 212 DYQSCPTSEDCENNPVDSFWKRASIQYSKDSSGVIHVMLNGSEPTGAYPIKGFFADYEIP Sbjct: 121 DYQSCPTSEDCENNPVDSFWKRASIQYSKDSSGVIHVMLNGSEPTGAYPIKGFFADYEIP 180 Query: 213 NLQKEKITRIEIWVMHEIGGPNVESCGEGSMKVLEKRLKDMGFQYSCINDYRPVKLLQCV 272 NLQKEKITRIEIWVMHEIGGPNVESCGEGSMKVLEKRLKDMGFQYSCINDYRPVKLLQCV Sbjct: 181 NLQKEKITRIEIWVMHEIGGPNVESCGEGSMKVLEKRLKDMGFQYSCINDYRPVKLLQCV 240 Query: 273 DHSTHPDCALKSAAAATQRKAPSLY 297 DHSTHPDCALKSAAAATQRKAPSLY Sbjct: 241 DHSTHPDCALKSAAAATQRKAPSLY 265 >3P5S-A nrPDB Length = 278 Score = 390 bits (1002), Expect = e-109, Method: Composition-based stats. Identities = 87/277 (31%), Positives = 135/277 (48%), Gaps = 16/277 (5%) Query: 6 CAASRLLQLLLQLLLLLLLLAAGGARA----------RWRGEGTSAHLRDIFLGRCAEYR 55 C R LL L+ GGA RW G G++A + I RC Y Sbjct: 4 CCTPRKKLCWCVLLFFLVAGITGGAIGIYKWHYSGLNRWHGAGSTADFQKIIQERCDTYT 63 Query: 56 ALLSPEQRNKNCTAIWEAFKVA-LDKDPCSVLPSDYDLFINLSRHSIPRDKSLFWENSHL 114 + P R++NC AI +AF A + KDPC DY+ INL+ ++P + +FW + Sbjct: 64 QTIRPGSRSRNCQAIRQAFMSAFISKDPCKATKEDYNSLINLAPPTVPCGQQVFWSKTKE 123 Query: 115 LVNSFADNTRRFMPLSDVLYGRVADFLSWCRQKNDSGLDYQSCPT-SEDCENNPVDSFWK 173 L + +A RR M L D L G +AD L WC + S L+ SCP +DC N + FW+ Sbjct: 124 LAHEYAKR-RRLMTLEDTLLGYLADGLRWCGEPGSSDLNIWSCPDWRKDCRTNYLSVFWE 182 Query: 174 RASIQYSKDSSGVIHVMLNGSEPTGAYPIKGFFADYEIPNLQKEKITRIEIWVMHEIGGP 233 S ++++ + + V+LNGS A+ F E PNL+ + +E W++H+ G P Sbjct: 183 VLSERFAESACNTVRVVLNGSL-ENAFDSMSIFGRVEAPNLRPQ--VELEAWLVHDTGKP 239 Query: 234 NVESCGEGSMKVLEKRLKDMGFQYSCINDYRPVKLLQ 270 +SC S++ L+ L ++ C+++ + LQ Sbjct: 240 PSDSCSGSSIRKLKSILDGRNVKFRCMDNLSRDQFLQ 276 >3I9N-A nrPDB Length = 262 Score = 372 bits (955), Expect = e-103, Method: Composition-based stats. Identities = 94/258 (36%), Positives = 138/258 (53%), Gaps = 8/258 (3%) Query: 30 ARARWR----GEGTSAHLRDIFLGRCAEYRALLSPEQRNKNCTAIWEAFKVA-LDKDPCS 84 A ARWR G GT+ + L RC +Y + PE R+ +C ++W+AFK A + K PC Sbjct: 4 AEARWRQTWSGPGTTKRFPETVLARCVKYTE-IHPEMRHVDCQSVWDAFKGAFISKHPCD 62 Query: 85 VLPSDYDLFINLSRHSIPRDKSLFWENSHLLVNSFADNTRRFMPLSDVLYGRVADFLSWC 144 + DY + L ++P +K L W L + F R L D L G +AD L+WC Sbjct: 63 ITEEDYQPLMKLGTQTVPCNKILLWSRIKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWC 122 Query: 145 RQKNDSGLDYQSCPT-SEDCENNPVDSFWKRASIQYSKDSSGVIHVMLNGSEPTGAYPIK 203 + + S ++YQSCP +DC NNPV FWK S ++++ + V+HVML+GS + + Sbjct: 123 GEFDTSKINYQSCPDWRKDCSNNPVSVFWKTVSRRFAEAACDVVHVMLDGSR-SKIFDKD 181 Query: 204 GFFADYEIPNLQKEKITRIEIWVMHEIGGPNVESCGEGSMKVLEKRLKDMGFQYSCINDY 263 F E+ NLQ EK+ +E WV+H + + C + ++K LE + Q+SC N Y Sbjct: 182 STFGSVEVHNLQPEKVQTLEAWVIHGGREDSRDLCQDPTIKELESIISKRNIQFSCKNIY 241 Query: 264 RPVKLLQCVDHSTHPDCA 281 RP K LQCV + C Sbjct: 242 RPDKFLQCVKNPEDSSCT 259 >5BNF-A nrPDB Length = 232 Score = 354 bits (909), Expect = 2e-98, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 129/233 (55%), Gaps = 2/233 (0%) Query: 34 WRGEGTSAHLRDIFLGRCAEYRALLSPEQRNKNCTAIWEAFKVA-LDKDPCSVLPSDYDL 92 W G+G++ ++I L RC Y ++ PE +++C I +AF A + KDPCS DYDL Sbjct: 1 WNGKGSTVDFQEIILRRCYTYIRVVQPELGDRDCQKIKKAFTDAFISKDPCSAREEDYDL 60 Query: 93 FINLSRHSIPRDKSLFWENSHLLVNSFADNTRRFMPLSDVLYGRVADFLSWCRQKNDSGL 152 + L ++P DK++FW + L + + + L + L G +AD LSWC + S + Sbjct: 61 LMKLGHQTVPCDKTVFWSKTKELAHQYTKTQKGLFTLENTLLGYIADDLSWCGKVGSSEI 120 Query: 153 DYQSCPTSEDCENNPVDSFWKRASIQYSKDSSGVIHVMLNGSEPTGAYPIKGFFADYEIP 212 + +SCP +C +N V FW S ++++++ G++ V LNGS + A+ F E+ Sbjct: 121 NLESCPDRRNCNSNFVSVFWNLLSKRFAENACGMVQVFLNGS-ISNAFDKTSTFGRVEVH 179 Query: 213 NLQKEKITRIEIWVMHEIGGPNVESCGEGSMKVLEKRLKDMGFQYSCINDYRP 265 +LQ K+ ++ WV+H+ G ++C S+ L+ L+ +++C +YRP Sbjct: 180 SLQPSKVHTLKAWVIHDSGKTPRDTCSGSSINELQLILRGKNIKFTCQENYRP 232 >3KOU-A nrPDB Length = 247 Score = 351 bits (901), Expect = 2e-97, Method: Composition-based stats. Identities = 79/240 (32%), Positives = 126/240 (52%), Gaps = 6/240 (2%) Query: 33 RWRGEGTSAHLRDIFLGRCAEYRALLSPEQRNKNCTAIWEAFKVA-LDKDPCSVLPSDYD 91 RW G G++A + I RC Y + P R++NC AI +AF A + KDPC DY+ Sbjct: 10 RWHGAGSTADFQKIIQERCDTYTQTIRPGSRSRNCQAIRQAFMSAFISKDPCKATKEDYN 69 Query: 92 LFINLSRHSIPRDKSLFWENSHLLVNSFADNTRRFMPLSDVLYGRVADFLSWCRQKNDSG 151 INL+ ++P + +FW + L + +A RR M L D L G +AD L WC + S Sbjct: 70 SLINLAPPTVPCGQQVFWSKTKELAHEYAKR-RRLMTLEDTLLGYLADGLRWCGEPGSSD 128 Query: 152 LDYQSCPT-SEDCENNPVDSFWKRASIQYSKDSSGVIHVMLNGSEPTGAYPIKGFFADYE 210 L+ SCP +DC N + FW+ S ++++ + + V+LNGS A+ F E Sbjct: 129 LNIWSCPDWRKDCRTNYLSVFWEVLSERFAESACNTVRVVLNGSL-ENAFDSMSIFGRVE 187 Query: 211 IPNLQKEKITRIEIWVMHEIGGPNVESCGEGSMKVLEKRLKDMGFQYSCINDYRPVKLLQ 270 PNL+ + +E W++H+ G P +SC S++ L+ L ++ C+++ + LQ Sbjct: 188 APNLRPQ--VELEAWLVHDTGKPPSDSCSGSSIRKLKSILDGRNVKFRCMDNLSRDQFLQ 245 >2EG9-A nrPDB Length = 253 Score = 349 bits (896), Expect = 9e-97, Method: Composition-based stats. Identities = 88/237 (37%), Positives = 132/237 (55%), Gaps = 3/237 (1%) Query: 34 WRGEGTSAHLRDIFLGRCAEYRALLSPEQRNKNCTAIWEAFKVAL-DKDPCSVLPSDYDL 92 W GE T+ H DIFLGRC Y +L PE R++NC I FK A K+PC + DY Sbjct: 18 WTGEPTTKHFSDIFLGRCLIYTQILRPEMRDQNCQEILSTFKGAFVSKNPCDITREDYAP 77 Query: 93 FINLSRHSIPRDKSLFWENSHLLVNSFADNTRRFMPLSDVLYGRVADFLSWCRQKNDSGL 152 + L +IP DK+LFW S L + + + L D L G +AD L WC + S + Sbjct: 78 LVKLVTQTIPCDKTLFWSKSKHLAHQYTWIQGKMFTLEDTLLGYIADDLRWCGDPSTSDM 137 Query: 153 DYQSCPT-SEDCENNPVDSFWKRASIQYSKDSSGVIHVMLNGSEPTGAYPIKGFFADYEI 211 +Y SCP SE+C NNP+ FWK S ++++D+ GV+ VML+GS Y F E+ Sbjct: 138 NYVSCPHWSENCPNNPITMFWKVISQKFAEDACGVVQVMLDGSLREPFY-KDSTFGSVEV 196 Query: 212 PNLQKEKITRIEIWVMHEIGGPNVESCGEGSMKVLEKRLKDMGFQYSCINDYRPVKL 268 +L K+ +++ WVMH+I G + +C S+ L+ ++ ++C+++YRP + Sbjct: 197 FSLDPNKVHKLQAWVMHDIEGASSNACSSSSLNELKMIVQKRNMIFACVDNYRPARF 253 >3ZWO-A nrPDB Length = 259 Score = 332 bits (852), Expect = 1e-91, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 134/249 (53%), Gaps = 8/249 (3%) Query: 40 SAHLRDIFLGRCAEYRAL----LSPEQRNKNCTAIWEAFKVALD-KDPCSVLPSDYDLFI 94 + L ++FLGRC +Y + P R+ +C+A+W+ F A K+PC + Y F Sbjct: 5 TRELENVFLGRCKDYEITRYLDILPRVRS-DCSALWKDFFKAFSFKNPCDLDLGSYKDFF 63 Query: 95 NLSRHSIPRDKSLFWENSHLLVNSFADNTRRFMPLSDVLYGRVADFLSWCRQKNDSGLDY 154 ++ +P++K +FW + + +A+ R+++ L D L G + + L WC Q+ + G + Sbjct: 64 TSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNE 123 Query: 155 QSCPTSEDCENNPVDSFWKRASIQYSKDSSGVIHVMLNGSEP-TGAYPIKGFFADYEIPN 213 + CP + C +SFW AS Y+ + G + M++GS P AY FF YE+PN Sbjct: 124 KVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPN 183 Query: 214 LQKEKITRIEIWVMHEIGGPNVESCGEGSMKVLEKRLKDMGFQYSCINDYRPVKLLQCVD 273 L K+TR+++ V+H +G +E CG GS+ LEK +K F + C+ + R V L C D Sbjct: 184 LT-NKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSD 242 Query: 274 HSTHPDCAL 282 + +C L Sbjct: 243 NPNARECRL 251 >4B7A-A nrPDB Length = 719 Score = 35.4 bits (80), Expect = 0.033, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 8/87 (9%) Query: 81 DPCSVLPSDYDLFINLSRHSIPRDKSLFWENSHLLVNSFADNTRRFMPLSDVLY-GRVAD 139 DP ++P +Y L + R+ + ++ + ++ R D L GR+ Sbjct: 330 DPTKIIPEEYAPLTKLGLLKLDRNPTNYFAETEQVMFQPGHIVRGIDFTEDPLLQGRLFS 389 Query: 140 FLSWCRQKNDSGLDYQSCPTSEDCENN 166 +L D+ L+ P E N Sbjct: 390 YL-------DTQLNRNGGPNFEQLPIN 409 >6GH2-A nrPDB Length = 913 Score = 32.4 bits (72), Expect = 0.29, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%) Query: 43 LRDIFLGRCAEYRALLSPEQRNKNCTAIWEAFKVALDKDPCSVLPSDYDLFINLSRHSIP 102 RD+F+ RC E A +PEQ NK TA + ++ + + +L + F N+ H Sbjct: 463 FRDVFVKRCRERDASWTPEQGNKLLTADGQIYEGTILEH---ILLQNIVPFFNVGEHGNI 519 Query: 103 RDKSLFWENSHLLVNS 118 + + W + L Sbjct: 520 KLEGADWNDGLDLAPE 535 >4QQ1-A nrPDB Length = 543 Score = 31.6 bits (70), Expect = 0.52, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 7/85 (8%) Query: 71 WEAFKVALDKDPCSVL----PSDYDLFINLSRHSIPRDKSLFWENSHLLVNSFADNTRRF 126 AF+ ++++ DY F LS+ + +F + V+ A T Sbjct: 348 KAAFQHEIEQNGVKATVCCSNLDYMSFGKLSKEN---KDDMFLQGVRTPVSDVAARTEAN 404 Query: 127 MPLSDVLYGRVADFLSWCRQKNDSG 151 YG +A+ SW + ++ Sbjct: 405 AKYRGTWYGYIANGTSWSGEASNQE 429 >1WNH-A nrPDB Length = 225 Score = 28.1 bits (61), Expect = 4.9, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 6/86 (6%) Query: 20 LLLLLLAAGGARARWRGEGTSAHL----RDIFLGRCAE--YRALLSPEQRNKNCTAIWEA 73 L L+ ++ G G HL +I + +L P+ + + Sbjct: 34 LFLVQTVQQASKEDIPGRGHKYHLKFSVEEIIQKQVTVNCTAEVLYPQMGQGSAPEVNFT 93 Query: 74 FKVALDKDPCSVLPSDYDLFINLSRH 99 F+ + K+P + Y ++L R Sbjct: 94 FEGEIGKNPDEEDNTFYQSLMSLKRP 119 >5UXH-A nrPDB Length = 367 Score = 28.1 bits (61), Expect = 5.8, Method: Composition-based stats. Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 3/31 (9%) Query: 155 QSCPTSEDCE---NNPVDSFWKRASIQYSKD 182 Q P + C NP FW + + ++K Sbjct: 109 QRSPDKKTCPMKEGNPFGPFWDQFHVSFAKS 139 >2AOV-A nrPDB Length = 292 Score = 27.7 bits (60), Expect = 6.1, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 21/49 (42%) Query: 223 EIWVMHEIGGPNVESCGEGSMKVLEKRLKDMGFQYSCINDYRPVKLLQC 271 ++W + P + C + L + L ++G +Y C + + + C Sbjct: 181 KLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYDLLSTMDISDC 229 >6FYJ-A nrPDB Length = 421 Score = 27.7 bits (60), Expect = 7.1, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 20/59 (33%) Query: 93 FINLSRHSIPRDKSLFWENSHLLVNSFADNTRRFMPLSDVLYGRVADFLSWCRQKNDSG 151 FI L+ H P +K F RRF P + V +W K + G Sbjct: 257 FIALALHHYPEEKEKLKSGDKKYSQMFVQEVRRFYPFFPFVVALVKKDFTWKGYKFEEG 315 >5H7V-A nrPDB Length = 421 Score = 27.7 bits (60), Expect = 7.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%) Query: 256 QYSCINDYRPVKLLQCVDHSTHPDCALKSA 285 Q+ C N L+C D PD + ++A Sbjct: 293 QFRCSNGCCIDSFLECDDTPNCPDASDEAA 322 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.313 0.132 0.388 Lambda K H 0.267 0.0403 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,453,093 Number of Sequences: 36641 Number of extensions: 502797 Number of successful extensions: 1091 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 1020 Number of HSP's gapped (non-prelim): 38 length of query: 318 length of database: 10,336,785 effective HSP length: 97 effective length of query: 221 effective length of database: 6,782,608 effective search space: 1498956368 effective search space used: 1498956368 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 59 (27.4 bits)