BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q08826 (162 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 1OCU-A nrPDB 334 1e-92 5F0L-C nrPDB 100 3e-22 2YPS-A nrPDB 96 5e-21 2CSK-A nrPDB 86 5e-18 4IKD-A nrPDB 63 6e-11 4IKB-B nrPDB 63 7e-11 3IQ2-A nrPDB 59 9e-10 4PZG-A nrPDB 54 4e-08 4OXW-A nrPDB 52 2e-07 2I4K-A nrPDB 44 2e-05 4AKV-A nrPDB 44 3e-05 6EDX-A nrPDB 39 0.001 2RAJ-A nrPDB 39 0.001 1XTE-A nrPDB 38 0.002 6H7W-D nrPDB 37 0.005 6H7W-B nrPDB 36 0.006 2ETT-A nrPDB 34 0.024 4AZ9-A nrPDB 33 0.039 5O5C-A nrPDB 30 0.53 3FOG-A nrPDB 30 0.61 6ECM-A nrPDB 30 0.69 5XYI-F nrPDB 27 2.9 4R71-B nrPDB 27 5.4 >1OCU-A nrPDB Length = 162 Score = 334 bits (857), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 162/162 (100%), Positives = 162/162 (100%) Query: 1 MPREFKSFGSTEKSLLSKGHGEPSYSEIYAEPENFLEIEVHNPKTHIPNGMDSKGMFTDY 60 MPREFKSFGSTEKSLLSKGHGEPSYSEIYAEPENFLEIEVHNPKTHIPNGMDSKGMFTDY Sbjct: 1 MPREFKSFGSTEKSLLSKGHGEPSYSEIYAEPENFLEIEVHNPKTHIPNGMDSKGMFTDY 60 Query: 61 EIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFS 120 EIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFS Sbjct: 61 EIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFS 120 Query: 121 NEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEKFVG 162 NEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEKFVG Sbjct: 121 NEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEKFVG 162 >5F0L-C nrPDB Length = 167 Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 63/141 (44%), Positives = 82/141 (58%), Gaps = 19/141 (13%) Query: 26 SEIYAEPENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDF 85 ++ Y P NFLEI+V NP+T G+ +G FT YEI +TNLP F + S VRRRYSDF Sbjct: 24 NDAYGPPSNFLEIDVSNPQTV---GV-GRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDF 79 Query: 86 EFFRKCLIKEISMLNHPKVMVPHLPGKILL--------SNRFSNEVIEERRQGLNTWMQS 137 E+ R L +E KV+VP LPGK L F + IEER+QGL ++ Sbjct: 80 EWLRSELERE------SKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINK 133 Query: 138 VAGHPLLQSGSKVLVRFIEAE 158 VAGHPL Q+ + L F++ E Sbjct: 134 VAGHPLAQN-ERCLHMFLQDE 153 >2YPS-A nrPDB Length = 134 Score = 96.3 bits (238), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 62/135 (45%), Positives = 79/135 (58%), Gaps = 19/135 (14%) Query: 32 PENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKC 91 P NFLEI+V NP+T G+ +G FT YEI +TNLP F + S VRRRYSDFE+ R Sbjct: 4 PSNFLEIDVSNPQTV---GV-GRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSE 59 Query: 92 LIKEISMLNHPKVMVPHLPGKILL--------SNRFSNEVIEERRQGLNTWMQSVAGHPL 143 L +E KV+VP LPGK L F + IEER+QGL ++ VAGHPL Sbjct: 60 LERE------SKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPL 113 Query: 144 LQSGSKVLVRFIEAE 158 Q+ + L F++ E Sbjct: 114 AQN-ERCLHMFLQDE 127 >2CSK-A nrPDB Length = 146 Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 56/133 (42%), Positives = 76/133 (57%), Gaps = 19/133 (14%) Query: 34 NFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLI 93 NFLEI++ NP+T G+ + FT YE+ RTNLP F + S VRRRYSDFE+ + L Sbjct: 9 NFLEIDIFNPQTV---GV-GRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELE 64 Query: 94 KEISMLNHPKVMVPHLPGKILLSNR--------FSNEVIEERRQGLNTWMQSVAGHPLLQ 145 ++ K++VP LPGK L F IEERRQGL ++ +AGHPL Q Sbjct: 65 RD------SKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQ 118 Query: 146 SGSKVLVRFIEAE 158 + + L F++ E Sbjct: 119 N-ERCLHMFLQEE 130 >4IKD-A nrPDB Length = 172 Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 9/120 (7%) Query: 31 EPENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRK 90 E E + + V +P+ +S + DY+I TN +F + S VRRRY +F + RK Sbjct: 6 EQEEVITVRVQDPRVQNEGSWNS---YVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRK 62 Query: 91 CLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKV 150 L + N V VP LPGK S+E IE+RRQGL +++ V +L S S++ Sbjct: 63 QLQR-----NAGLVPVPELPGKSTFFGT-SDEFIEKRRQGLQHFLEKVLQSVVLLSDSQL 116 >4IKB-B nrPDB Length = 144 Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 9/120 (7%) Query: 31 EPENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRK 90 E E + + V +P+ +S + DY+I TN +F + S VRRRY +F + RK Sbjct: 6 EQEEVITVRVQDPRVQNEGSWNS---YVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRK 62 Query: 91 CLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKV 150 L + N V VP LPGK S+E IE+RRQGL +++ V +L S S++ Sbjct: 63 QLQR-----NAGLVPVPELPGKSTFFGT-SDEFIEKRRQGLQHFLEKVLQSVVLLSDSQL 116 >3IQ2-A nrPDB Length = 138 Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 12/112 (10%) Query: 36 LEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKE 95 L I V P++H+ + F Y II +T+ F +VRRRY DF + + L + Sbjct: 9 LFITVDEPESHVT----TIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEE- 63 Query: 96 ISMLNHPKVMVPHLPGKILLS---NRFSNEVIEERRQGLNTWMQSVAGHPLL 144 HP +++P LP K ++ RF+++ IE RR+ L+ ++ +A HP L Sbjct: 64 ----AHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKALHKFLNRIADHPTL 111 >4PZG-A nrPDB Length = 209 Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 8/108 (7%) Query: 31 EPENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRK 90 + E F+ + V +P+ + S + DYEI TN F + S VRRRY +F + R+ Sbjct: 6 QKEEFVSVWVRDPRIQKEDFWHS---YIDYEICIHTNSMCFTMKTSCVRRRYREFVWLRQ 62 Query: 91 CLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSV 138 L N V +P LP K L N + + +++RRQGL +++ V Sbjct: 63 RL-----QSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKV 105 >4OXW-A nrPDB Length = 119 Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 50/81 (61%), Gaps = 7/81 (8%) Query: 78 VRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQS 137 V RRYSDF + K L + +P+ +VP LP K + + +++E+R+QGL ++Q Sbjct: 41 VYRRYSDFYWLHKKLQQ-----RYPE-LVPELPPKKWIYSALDEQILEKRKQGLEKYIQR 94 Query: 138 VAGHPLLQSGSKVLVRFIEAE 158 + HP+L + +++V F++A+ Sbjct: 95 IVSHPVL-ANDELVVSFLQAK 114 >2I4K-A nrPDB Length = 128 Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 17/133 (12%) Query: 36 LEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKE 95 L + + +P+ I +GM++ + Y++ +T+LP F + V+RR+SDF + L ++ Sbjct: 4 LTVGITDPE-KIGDGMNA---YVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEK 59 Query: 96 ISMLNHPKVMVPHLPGKILLS---------NRFSNEVIEERRQGLNTWMQSVAGHPLLQS 146 S +VP P K L+ + S E +E+RR L ++Q + HP + Sbjct: 60 HS---QNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQ 116 Query: 147 GSKVLVRFIEAEK 159 V F+E E+ Sbjct: 117 DPDVR-EFLEKEE 128 >4AKV-A nrPDB Length = 386 Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 75 VSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTW 134 S V RRY F++ L+ + ++++ VPHLP K + RF + IE+R++ L W Sbjct: 72 ASPVYRRYKHFDWLYNRLLHKFTVIS-----VPHLPEK-QATGRFEEDFIEKRKRRLILW 125 Query: 135 MQSVAGHPLL 144 M + HP+L Sbjct: 126 MDHMTSHPVL 135 >6EDX-A nrPDB Length = 118 Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 14/105 (13%) Query: 43 PKTHIPNG---MDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISML 99 P IP+ + K FT Y+++ + V RRY++F+ L K+ Sbjct: 7 PSVSIPSSDEHREKKKRFTVYKVLVSVGRSEWF-----VFRRYAEFDKLYNTLKKQFP-- 59 Query: 100 NHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLL 144 M +P K + + F + I++RR GLN ++Q++ +P L Sbjct: 60 ----AMALKIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPEL 100 >2RAJ-A nrPDB Length = 392 Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 30/157 (19%) Query: 11 TEKSLLSKGHGEP---------SYSEIYAEPENFLEIEVHNPKTHIPNGMDSKGM--FTD 59 TE+ LL+K +P Y ++ P + + V +P+ G G+ + + Sbjct: 13 TEQYLLAKQLAKPKEKIPIIVGDYGPMWVYPTSTFDCVVADPR----KGSKMYGLKSYIE 68 Query: 60 YEIICRTNLPSFHKRVSKVRRRYSDFEF-FRKCLIKEISMLNHPKVMVPHLPGKILLSNR 118 Y++ P+ R V RY F++ + + L+K S + +P LP K ++ R Sbjct: 69 YQLT-----PTNTNR--SVNHRYKHFDWLYERLLVKFGSA-----IPIPSLPDK-QVTGR 115 Query: 119 FSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFI 155 F E I+ R + L WM + HP++ S S+V +F+ Sbjct: 116 FEEEFIKMRMERLQAWMTRMCRHPVI-SESEVFQQFL 151 >1XTE-A nrPDB Length = 154 Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 14/105 (13%) Query: 43 PKTHIPNG---MDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISML 99 P IP+ + K FT Y+++ + V RRY++F+ L K+ Sbjct: 8 PSVSIPSSDEHREKKKRFTVYKVLVSVGRSEWF-----VFRRYAEFDKLYNSLKKQFP-- 60 Query: 100 NHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLL 144 M +P K + + F + I++RR GLN ++Q++ +P L Sbjct: 61 ----AMALKIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPEL 101 >6H7W-D nrPDB Length = 129 Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 7/101 (6%) Query: 60 YEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRF 119 Y + +T ++ + +V+RRY DF + L + P G RF Sbjct: 25 YSVRTKTTSKAYKQPEFEVKRRYRDFLWLYNTLHSNNPGVVVPPPPEKQAVG------RF 78 Query: 120 SNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEKF 160 + +E RR L + +A HP LQ + + + F+E+E F Sbjct: 79 ESNFVESRRAALEKMLNKIAAHPTLQLDADLKL-FLESESF 118 >6H7W-B nrPDB Length = 368 Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 7/101 (6%) Query: 60 YEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRF 119 Y + +T ++ + +V+RRY DF + L + P G RF Sbjct: 25 YSVRTKTTSKAYKQPEFEVKRRYRDFLWLYNTLHSNNPGVVVPPPPEKQAVG------RF 78 Query: 120 SNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEKF 160 + +E RR L + +A HP LQ + + + F+E+E F Sbjct: 79 ESNFVESRRAALEKMLNKIAAHPTLQLDADLKL-FLESESF 118 >2ETT-A nrPDB Length = 128 Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 54/130 (41%), Gaps = 24/130 (18%) Query: 36 LEIEVH----NPKTHIPNGMDSKG-MFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRK 90 LE+EVH P+ P K M E++C R V RRYS+F Sbjct: 8 LELEVHIPSVGPEAEGPRQSPEKSHMVFRVEVLCSG-------RRHTVPRRYSEFH---- 56 Query: 91 CLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKV 150 L K I L VP P K L + R +E+RRQGL ++Q + L Q K Sbjct: 57 ALHKRIKKL----YKVPDFPSKRLPNWRTRG--LEQRRQGLEAYIQGILY--LNQEVPKE 108 Query: 151 LVRFIEAEKF 160 L+ F+ F Sbjct: 109 LLEFLRLRHF 118 >4AZ9-A nrPDB Length = 129 Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 10/61 (16%) Query: 78 VRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQS 137 V +RYS+F K L K I P +P K + + +V+E+RRQGL T++Q+ Sbjct: 57 VEKRYSEFHALHKKLKKCIK--------TPEIPSKHV--RNWVPKVLEQRRQGLETYLQA 106 Query: 138 V 138 V Sbjct: 107 V 107 >5O5C-A nrPDB Length = 519 Score = 30.0 bits (66), Expect = 0.53, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 85 FEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAG 140 E +K +++ +HPK V HL ++L + + +++ ++TW QS G Sbjct: 87 LEELKKLYLRDAVWFHHPK-YVAHLNCPVVLPSLLAEQIMAAVNSSVDTWDQSAGG 141 >3FOG-A nrPDB Length = 115 Score = 29.6 bits (65), Expect = 0.61, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 15/104 (14%) Query: 43 PKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHP 102 P+T +G + Y I L H RV RYS + L KE + Sbjct: 6 PETESRSGDSGGSAYVAYNIHVNGVL---HCRV-----RYSQLLGLHEQLRKE-----YG 52 Query: 103 KVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQS 146 ++P P K L S + +E+RR+ L +MQ+V PLL S Sbjct: 53 ANVLPAFPPKKLFS--LTPAEVEQRREQLEKYMQAVRQDPLLGS 94 >6ECM-A nrPDB Length = 128 Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 13/122 (10%) Query: 33 ENFLE-IEVHNPKTHIPNGMDSKGMFTDYEIICR---TNLPSFHKRVSKVRRRYSDFEFF 88 ++FL V +P+TH P G +T+Y++ + P K V V +RYSDF Sbjct: 9 DDFLRHYTVSDPRTH-PKG------YTEYKVTAQFISKKDPEDVKEVV-VWKRYSDFRKL 60 Query: 89 RKCLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGS 148 L L P P + + RF VIEERR+G ++ P L + Sbjct: 61 HGDLAYTHRNLFRRLEEFPAFP-RAQVFGRFEASVIEERRKGAEDLLRFTVHIPALNNSP 119 Query: 149 KV 150 ++ Sbjct: 120 QL 121 >5XYI-F nrPDB Length = 193 Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust. Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 17/98 (17%) Query: 82 YSDFEF--FRKCLIKEISMLNHPKVMVPHLPGKIL----------LSNRFSNEVIEE-RR 128 YSD +F L+ IS+ VMVPH G+ + L R N ++ R Sbjct: 12 YSDVDFSQLDPALVDYISVHEKQHVMVPHTAGRYVHKRFQKVSCPLVERLCNHLMSRGRN 71 Query: 129 QGLNTWMQSVAGHPL----LQSGSKVLVRFIEAEKFVG 162 G + H L +G +V F++ ++ G Sbjct: 72 TGKKLLAIRIVEHAFDIIALSTGQNPIVTFVKGVQYCG 109 >4R71-B nrPDB Length = 595 Score = 26.6 bits (57), Expect = 5.4, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 18/35 (51%) Query: 48 PNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRY 82 P+G DS +F ++ICR+N + K +Y Sbjct: 536 PSGCDSADLFAIDQLICRSNPTKISRSTGKFDIQY 570 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 1OCU-A nrPDB 228 7e-61 5F0L-C nrPDB 143 3e-35 2RAJ-A nrPDB 134 2e-32 2YPS-A nrPDB 132 5e-32 4IKD-A nrPDB 131 2e-31 2CSK-A nrPDB 128 9e-31 4IKB-B nrPDB 127 2e-30 4PZG-A nrPDB 120 3e-28 2I4K-A nrPDB 111 1e-25 3IQ2-A nrPDB 110 3e-25 4OXW-A nrPDB 97 4e-21 4AKV-A nrPDB 95 1e-20 6EDX-A nrPDB 91 2e-19 1XTE-A nrPDB 91 3e-19 Sequences not found previously or not previously below threshold: 6H7W-B nrPDB 81 3e-16 6H7W-D nrPDB 79 8e-16 5GW1-A nrPDB 61 2e-10 6ECM-A nrPDB 56 8e-09 4P2J-A nrPDB 51 2e-07 3FOG-A nrPDB 51 3e-07 4BGJ-A nrPDB 50 5e-07 5TP1-A nrPDB 50 6e-07 4PQP-A nrPDB 49 8e-07 3P0C-A nrPDB 49 1e-06 2DYB-A nrPDB 47 4e-06 4HAS-A nrPDB 47 5e-06 1H6H-A nrPDB 46 6e-06 4AZ9-A nrPDB 43 5e-05 2ETT-A nrPDB 40 4e-04 6EE0-A nrPDB 40 5e-04 5WOE-A nrPDB 40 6e-04 1KMD-A nrPDB 39 7e-04 6E8R-A nrPDB 39 0.001 1GD5-A nrPDB 36 0.006 3L2D-A nrPDB 35 0.012 2REA-A nrPDB 35 0.019 2IWL-X nrPDB 34 0.033 2CZO-A nrPDB 33 0.055 1UA7-A nrPDB 31 0.28 4XBH-A nrPDB 28 1.7 5WAX-A nrPDB 27 3.0 4V7E-BL nrPDB 27 3.0 5U4I-v nrPDB 27 3.1 5NYB-A nrPDB 27 3.1 4V3P-SP nrPDB 27 3.3 4EZI-A nrPDB 26 8.4 >1OCU-A nrPDB Length = 162 Score = 228 bits (582), Expect = 7e-61, Method: Composition-based stats. Identities = 162/162 (100%), Positives = 162/162 (100%) Query: 1 MPREFKSFGSTEKSLLSKGHGEPSYSEIYAEPENFLEIEVHNPKTHIPNGMDSKGMFTDY 60 MPREFKSFGSTEKSLLSKGHGEPSYSEIYAEPENFLEIEVHNPKTHIPNGMDSKGMFTDY Sbjct: 1 MPREFKSFGSTEKSLLSKGHGEPSYSEIYAEPENFLEIEVHNPKTHIPNGMDSKGMFTDY 60 Query: 61 EIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFS 120 EIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFS Sbjct: 61 EIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFS 120 Query: 121 NEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEKFVG 162 NEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEKFVG Sbjct: 121 NEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEKFVG 162 >5F0L-C nrPDB Length = 167 Score = 143 bits (361), Expect = 3e-35, Method: Composition-based stats. Identities = 62/141 (43%), Positives = 80/141 (56%), Gaps = 19/141 (13%) Query: 26 SEIYAEPENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDF 85 ++ Y P NFLEI+V NP+T +G FT YEI +TNLP F + S VRRRYSDF Sbjct: 24 NDAYGPPSNFLEIDVSNPQTVGV----GRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDF 79 Query: 86 EFFRKCLIKEISMLNHPKVMVPHLPGKILLS--------NRFSNEVIEERRQGLNTWMQS 137 E+ R L +E KV+VP LPGK L F + IEER+QGL ++ Sbjct: 80 EWLRSELERE------SKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINK 133 Query: 138 VAGHPLLQSGSKVLVRFIEAE 158 VAGHPL Q+ + L F++ E Sbjct: 134 VAGHPLAQN-ERCLHMFLQDE 153 >2RAJ-A nrPDB Length = 392 Score = 134 bits (336), Expect = 2e-32, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 24/154 (15%) Query: 11 TEKSLLSKGHGEP---------SYSEIYAEPENFLEIEVHNPKTHIPNGMDSKGMFTDYE 61 TE+ LL+K +P Y ++ P + + V +P+ + M + +Y+ Sbjct: 13 TEQYLLAKQLAKPKEKIPIIVGDYGPMWVYPTSTFDCVVADPR--KGSKMYGLKSYIEYQ 70 Query: 62 IICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFSN 121 + P+ R V RY F++ + L+ + + +P LP K ++ RF Sbjct: 71 LT-----PTNTNR--SVNHRYKHFDWLYERLLVKFG----SAIPIPSLPDK-QVTGRFEE 118 Query: 122 EVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFI 155 E I+ R + L WM + HP++ S S+V +F+ Sbjct: 119 EFIKMRMERLQAWMTRMCRHPVI-SESEVFQQFL 151 >2YPS-A nrPDB Length = 134 Score = 132 bits (333), Expect = 5e-32, Method: Composition-based stats. Identities = 61/136 (44%), Positives = 77/136 (56%), Gaps = 19/136 (13%) Query: 31 EPENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRK 90 P NFLEI+V NP+T +G FT YEI +TNLP F + S VRRRYSDFE+ R Sbjct: 3 PPSNFLEIDVSNPQTVGV----GRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRS 58 Query: 91 CLIKEISMLNHPKVMVPHLPGKILLS--------NRFSNEVIEERRQGLNTWMQSVAGHP 142 L +E KV+VP LPGK L F + IEER+QGL ++ VAGHP Sbjct: 59 ELERE------SKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHP 112 Query: 143 LLQSGSKVLVRFIEAE 158 L Q+ + L F++ E Sbjct: 113 LAQN-ERCLHMFLQDE 127 >4IKD-A nrPDB Length = 172 Score = 131 bits (328), Expect = 2e-31, Method: Composition-based stats. Identities = 44/128 (34%), Positives = 67/128 (52%), Gaps = 10/128 (7%) Query: 31 EPENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRK 90 E E + + V +P+ +S + DY+I TN +F + S VRRRY +F + RK Sbjct: 6 EQEEVITVRVQDPRVQNEGSWNS---YVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRK 62 Query: 91 CLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKV 150 L + N V VP LPGK S+E IE+RRQGL +++ V +L S S+ Sbjct: 63 QLQR-----NAGLVPVPELPGKSTFFGT-SDEFIEKRRQGLQHFLEKVLQSVVLLSDSQ- 115 Query: 151 LVRFIEAE 158 L F++++ Sbjct: 116 LHLFLQSQ 123 >2CSK-A nrPDB Length = 146 Score = 128 bits (322), Expect = 9e-31, Method: Composition-based stats. Identities = 55/133 (41%), Positives = 74/133 (55%), Gaps = 19/133 (14%) Query: 34 NFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLI 93 NFLEI++ NP+T + FT YE+ RTNLP F + S VRRRYSDFE+ + L Sbjct: 9 NFLEIDIFNPQTVGV----GRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELE 64 Query: 94 KEISMLNHPKVMVPHLPGKILLS--------NRFSNEVIEERRQGLNTWMQSVAGHPLLQ 145 ++ K++VP LPGK L F IEERRQGL ++ +AGHPL Q Sbjct: 65 RD------SKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQ 118 Query: 146 SGSKVLVRFIEAE 158 + + L F++ E Sbjct: 119 N-ERCLHMFLQEE 130 >4IKB-B nrPDB Length = 144 Score = 127 bits (319), Expect = 2e-30, Method: Composition-based stats. Identities = 44/128 (34%), Positives = 67/128 (52%), Gaps = 10/128 (7%) Query: 31 EPENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRK 90 E E + + V +P+ +S + DY+I TN +F + S VRRRY +F + RK Sbjct: 6 EQEEVITVRVQDPRVQNEGSWNS---YVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRK 62 Query: 91 CLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKV 150 L + N V VP LPGK S+E IE+RRQGL +++ V +L S S+ Sbjct: 63 QLQR-----NAGLVPVPELPGKSTFFGT-SDEFIEKRRQGLQHFLEKVLQSVVLLSDSQ- 115 Query: 151 LVRFIEAE 158 L F++++ Sbjct: 116 LHLFLQSQ 123 >4PZG-A nrPDB Length = 209 Score = 120 bits (300), Expect = 3e-28, Method: Composition-based stats. Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 8/110 (7%) Query: 31 EPENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRK 90 + E F+ + V +P+ + S + DYEI TN F + S VRRRY +F + R+ Sbjct: 6 QKEEFVSVWVRDPRIQKEDFWHS---YIDYEICIHTNSMCFTMKTSCVRRRYREFVWLRQ 62 Query: 91 CLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAG 140 L N V +P LP K L N + + +++RRQGL +++ V Sbjct: 63 RLQ-----SNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQ 107 >2I4K-A nrPDB Length = 128 Score = 111 bits (277), Expect = 1e-25, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 17/133 (12%) Query: 36 LEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKE 95 L + + +P+ I +GM++ + Y++ +T+LP F + V+RR+SDF + L ++ Sbjct: 4 LTVGITDPE-KIGDGMNA---YVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEK 59 Query: 96 ISMLNHPKVMVPHLPGKILLS---------NRFSNEVIEERRQGLNTWMQSVAGHPLLQS 146 S +VP P K L+ + S E +E+RR L ++Q + HP + Sbjct: 60 HS---QNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQ 116 Query: 147 GSKVLVRFIEAEK 159 V F+E E+ Sbjct: 117 DPDVR-EFLEKEE 128 >3IQ2-A nrPDB Length = 138 Score = 110 bits (275), Expect = 3e-25, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 13/128 (10%) Query: 36 LEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKE 95 L I V P++H+ + F Y II +T+ F +VRRRY DF + + L + Sbjct: 9 LFITVDEPESHVT----TIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEE- 63 Query: 96 ISMLNHPKVMVPHLPGKILLSN---RFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLV 152 HP +++P LP K ++ RF+++ IE RR+ L+ ++ +A HP L Sbjct: 64 ----AHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNED-FK 118 Query: 153 RFIEAEKF 160 F+ A+ + Sbjct: 119 IFLTAQAW 126 >4OXW-A nrPDB Length = 119 Score = 96.8 bits (239), Expect = 4e-21, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 16/127 (12%) Query: 32 PENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKC 91 P++ +++ + + + K Y+I +T + V RRYSDF + K Sbjct: 4 PDSLMKVSIPD----FEKEGEGKSKHVMYKIKVKTGGEEW-----AVYRRYSDFYWLHKK 54 Query: 92 LIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVL 151 L + +VP LP K + + +++E+R+QGL ++Q + HP+L + +++ Sbjct: 55 LQQRYPE------LVPELPPKKWIYSALDEQILEKRKQGLEKYIQRIVSHPVL-ANDELV 107 Query: 152 VRFIEAE 158 V F++A+ Sbjct: 108 VSFLQAK 114 >4AKV-A nrPDB Length = 386 Score = 95.2 bits (235), Expect = 1e-20, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 16/130 (12%) Query: 26 SEIYAEPENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDF 85 + + V +P + Y++ S V RRY F Sbjct: 32 GPQWKANPHPFACSVEDPTKQTK--FKGIKSYISYKLTP-------THAASPVYRRYKHF 82 Query: 86 EFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQ 145 ++ L+ + ++++ VPHLP K + RF + IE+R++ L WM + HP+L Sbjct: 83 DWLYNRLLHKFTVIS-----VPHLPEK-QATGRFEEDFIEKRKRRLILWMDHMTSHPVL- 135 Query: 146 SGSKVLVRFI 155 S + F+ Sbjct: 136 SQYEGFQHFL 145 >6EDX-A nrPDB Length = 118 Score = 91.0 bits (224), Expect = 2e-19, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 15/117 (12%) Query: 43 PKTHIPNG---MDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISML 99 P IP+ + K FT Y+++ + V RRY++F+ L K+ Sbjct: 7 PSVSIPSSDEHREKKKRFTVYKVLVSVGRSEWF-----VFRRYAEFDKLYNTLKKQFPA- 60 Query: 100 NHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIE 156 M +P K + + F + I++RR GLN ++Q++ +P L + V F++ Sbjct: 61 -----MALKIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVR-AFLQ 111 >1XTE-A nrPDB Length = 154 Score = 90.6 bits (223), Expect = 3e-19, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 15/117 (12%) Query: 43 PKTHIPNG---MDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISML 99 P IP+ + K FT Y+++ + V RRY++F+ L K+ Sbjct: 8 PSVSIPSSDEHREKKKRFTVYKVLVSVGRSEWF-----VFRRYAEFDKLYNSLKKQFPA- 61 Query: 100 NHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIE 156 M +P K + + F + I++RR GLN ++Q++ +P L + V F++ Sbjct: 62 -----MALKIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVR-AFLQ 112 >6H7W-B nrPDB Length = 368 Score = 80.6 bits (197), Expect = 3e-16, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 11/126 (8%) Query: 35 FLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIK 94 I V +P D Y + +T ++ + +V+RRY DF + L Sbjct: 4 TFHITVGDPHKVG----DLATSHIVYSVRTKTTSKAYKQPEFEVKRRYRDFLWLYNTLHS 59 Query: 95 EISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRF 154 + P + RF + +E RR L + +A HP LQ + L F Sbjct: 60 NNPGVVVPPPP------EKQAVGRFESNFVESRRAALEKMLNKIAAHPTLQLDAD-LKLF 112 Query: 155 IEAEKF 160 +E+E F Sbjct: 113 LESESF 118 >6H7W-D nrPDB Length = 129 Score = 79.1 bits (193), Expect = 8e-16, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 11/126 (8%) Query: 35 FLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIK 94 I V +P D Y + +T ++ + +V+RRY DF + L Sbjct: 4 TFHITVGDPHKVG----DLATSHIVYSVRTKTTSKAYKQPEFEVKRRYRDFLWLYNTLHS 59 Query: 95 EISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRF 154 + P + RF + +E RR L + +A HP LQ + L F Sbjct: 60 NNPGVVVPPPP------EKQAVGRFESNFVESRRAALEKMLNKIAAHPTLQLDAD-LKLF 112 Query: 155 IEAEKF 160 +E+E F Sbjct: 113 LESESF 118 >5GW1-A nrPDB Length = 179 Score = 61.3 bits (147), Expect = 2e-10, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 10/104 (9%) Query: 43 PKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHP 102 P M+ + FT Y+I+ + V RRY+DF L + Sbjct: 11 PTILGYEVMEERAKFTVYKILVKKTPEE----SWVVFRRYTDFSRLNDKLKEMFPGFRLA 66 Query: 103 KVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQS 146 LP K + ++ + +E+R+ GL ++Q++ H + + Sbjct: 67 ------LPPKRWFKDNYNADFLEDRQLGLQAFLQNLVAHKDIAN 104 >6ECM-A nrPDB Length = 128 Score = 55.9 bits (133), Expect = 8e-09, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 10/118 (8%) Query: 39 EVHNPKTHIPNGMDSKGMFTDYEIICR--TNLPSFHKRVSKVRRRYSDFEFFRKCLIKEI 96 V +P+TH +T+Y++ + + + V +RYSDF L Sbjct: 16 TVSDPRTHPKG-------YTEYKVTAQFISKKDPEDVKEVVVWKRYSDFRKLHGDLAYTH 68 Query: 97 SMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRF 154 L P P + + RF VIEERR+G ++ P L + ++ F Sbjct: 69 RNLFRRLEEFPAFP-RAQVFGRFEASVIEERRKGAEDLLRFTVHIPALNNSPQLKEFF 125 >4P2J-A nrPDB Length = 137 Score = 50.9 bits (120), Expect = 2e-07, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 15/121 (12%) Query: 44 KTHIPNGMDSKGMFTD-YEIIC--RTNLPSFHKRVSKVRRRYSDFEFFRKCLI------K 94 + H G ++T YE + + V RRY +F + L K Sbjct: 20 REHSGTGFHPYTLYTVKYETVLNGENSSGLQQLAYHTVNRRYREFLNLQTRLEEKPDLRK 79 Query: 95 EISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRF 154 I + PK + P LP ++ +E R+ L ++++ + P + + +V F Sbjct: 80 FIKNVKGPKKLFPDLP-----FGNMDSDRVEARKSLLESFLKQLCAIPEIGNSEEV-QEF 133 Query: 155 I 155 + Sbjct: 134 L 134 >3FOG-A nrPDB Length = 115 Score = 50.6 bits (119), Expect = 3e-07, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 16/117 (13%) Query: 43 PKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHP 102 P+T +G + Y I L R RYS + L KE Sbjct: 6 PETESRSGDSGGSAYVAYNIHVNGVLHC--------RVRYSQLLGLHEQLRKEYGAN--- 54 Query: 103 KVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEK 159 ++P P K L + +E+RR+ L +MQ+V PLL S S+ F+ + Sbjct: 55 --VLPAFPPKKLF--SLTPAEVEQRREQLEKYMQAVRQDPLLGS-SETFNSFLRRAQ 106 >4BGJ-A nrPDB Length = 147 Score = 50.2 bits (118), Expect = 5e-07, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 7/79 (8%) Query: 77 KVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQ 136 V RRY +F L + H LP K ++ + + E ++ +R+ ++Q Sbjct: 57 SVYRRYLEFYVLESKLTEF-----HGAFPDAQLPSKRIIGPK-NYEFLKSKREEFQEYLQ 110 Query: 137 SVAGHPLLQSGSKVLVRFI 155 + HP L S S++L F+ Sbjct: 111 KLLQHPEL-SNSQLLADFL 128 >5TP1-A nrPDB Length = 166 Score = 49.8 bits (117), Expect = 6e-07, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 57/162 (35%), Gaps = 38/162 (23%) Query: 30 AEPENFLEIEVH-NPKTHI--PNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFE 86 + ++++ +P I P+ + + + + +T L +F V R++ DF Sbjct: 1 GPSSPSVSVDLNVDPSLQIDIPDALSERDK-VKFTVHTKTTLSTFQSPEFSVTRQHEDFV 59 Query: 87 FFRKCLIKEISMLNHPKVMVPHLPGKILLSN--------------RFSNEVIEERRQGLN 132 + L + ++ +++P P K E + +Q L Sbjct: 60 WLHDTLTE---TTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKM-KQELE 115 Query: 133 T---------------WMQSVAGHPLLQSGSKVLVRFIEAEK 159 ++Q ++ HP+L S + F+E ++ Sbjct: 116 AEYLAVFKKTVSTHEVFLQRLSSHPVL-SKDRNFHVFLEYDQ 156 >4PQP-A nrPDB Length = 128 Score = 49.4 bits (116), Expect = 8e-07, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 7/79 (8%) Query: 77 KVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQ 136 V RRY +F L + H LP K ++ + + E ++ +R+ ++Q Sbjct: 54 SVYRRYLEFYVLESKLTEF-----HGAFPDAQLPSKRIIGPK-NYEFLKSKREEFQEYLQ 107 Query: 137 SVAGHPLLQSGSKVLVRFI 155 + HP L S S++L F+ Sbjct: 108 KLLQHPEL-SNSQLLADFL 125 >3P0C-A nrPDB Length = 130 Score = 49.0 bits (115), Expect = 1e-06, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 15/108 (13%) Query: 50 GMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHL 109 G + +T Y I + V+ RYSDF + L+ E + + L Sbjct: 29 GSELVDTYTVYIIQVTDGSHEWT-----VKHRYSDFHDLHEKLVAERKIDKNL------L 77 Query: 110 PGKILLSNRFSNEVIEERRQGLNTWMQS-VAGHPLLQSGSKVLVRFIE 156 P K ++ + S ++E+R + L ++Q +A P + +VL F+ Sbjct: 78 PPKKII-GKNSRSLVEKREKDLEVYLQKLLAAFPGVT--PRVLAHFLH 122 >2DYB-A nrPDB Length = 341 Score = 47.1 bits (110), Expect = 4e-06, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 6/84 (7%) Query: 78 VRRRYSDFEFFRKCLIKEI---SMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTW 134 + RRY F + L + S + +P LP K+ + E+ E R LN + Sbjct: 57 IYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVYVG--VKQEIAEMRIPALNAY 114 Query: 135 MQSVAGHPL-LQSGSKVLVRFIEA 157 M+S+ P+ + V + F ++ Sbjct: 115 MKSLLSLPVWVLMDEDVRIFFYQS 138 >4HAS-A nrPDB Length = 133 Score = 46.7 bits (109), Expect = 5e-06, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 8/78 (10%) Query: 80 RRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVA 139 +RY +F + L +E + P LPGK S + ++ RR+GL +++ V Sbjct: 63 KRYREFAILHQNLKREFAN-----FTFPRLPGKWPF--SLSEQQLDARRRGLEEYLEKVC 115 Query: 140 GHPLLQSGSKVLVRFIEA 157 ++ S ++ F+ Sbjct: 116 SIRVI-GESDIMQEFLSE 132 >1H6H-A nrPDB Length = 143 Score = 46.3 bits (108), Expect = 6e-06, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 6/84 (7%) Query: 78 VRRRYSDFEFFRKCLIKEI---SMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTW 134 + RRY F + L + S + +P LP K+ + E+ E R LN + Sbjct: 54 IYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVYVG--VKQEIAEMRIPALNAY 111 Query: 135 MQSVAGHPL-LQSGSKVLVRFIEA 157 M+S+ P+ + V + F ++ Sbjct: 112 MKSLLSLPVWVLMDEDVRIFFYQS 135 >4AZ9-A nrPDB Length = 129 Score = 43.2 bits (100), Expect = 5e-05, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 21/122 (17%) Query: 35 FLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIK 94 F +EV+ P +G +T ++I N R V +RYS+F K L K Sbjct: 20 FQSMEVYIPSFRYEESDLERG-YTVFKIEVLMN-----GRKHFVEKRYSEFHALHKKLKK 73 Query: 95 EISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRF 154 + P +P K + + +V+E+RRQGL T++Q+V + ++ F Sbjct: 74 --------CIKTPEIPSKHV--RNWVPKVLEQRRQGLETYLQAV-----ILENEELPKLF 118 Query: 155 IE 156 ++ Sbjct: 119 LD 120 >2ETT-A nrPDB Length = 128 Score = 40.2 bits (92), Expect = 4e-04, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 12/87 (13%) Query: 74 RVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNT 133 R V RRYS+F K + K VP P K L + +E+RRQGL Sbjct: 44 RRHTVPRRYSEFHALHKRIKKLYK--------VPDFPSKRL--PNWRTRGLEQRRQGLEA 93 Query: 134 WMQSVAGHPLLQSGSKVLVRFIEAEKF 160 ++Q + L Q K L+ F+ F Sbjct: 94 YIQGILY--LNQEVPKELLEFLRLRHF 118 >6EE0-A nrPDB Length = 133 Score = 39.8 bits (91), Expect = 5e-04, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 13/99 (13%) Query: 38 IEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEIS 97 I++ P+ + K ++E+ ++ V RRYS F K L Sbjct: 5 IKISIPRYVLCG--QGKDAHFEFEVKITVLDETWT-----VFRRYSRFREMHKTLK---- 53 Query: 98 MLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQ 136 L + ++ P K L N+ VI ERR L +++ Sbjct: 54 -LKYAELAALEFPPKKLFGNK-DERVIAERRSHLEKYLR 90 >5WOE-A nrPDB Length = 125 Score = 39.8 bits (91), Expect = 6e-04, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 5/83 (6%) Query: 73 KRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLN 132 + V RR S+F+ + L + + L KV +P L L + +E+ + LN Sbjct: 41 TKNWTVPRRLSEFQNLHRKLSECVPSLK--KVQLPSL--SKLPFKSIDQKFMEKSKNQLN 96 Query: 133 TWMQSVAGHPLLQSGSKVLVRFI 155 ++Q++ L S+ L F+ Sbjct: 97 KFLQNLLSDERLCQ-SEALYAFL 118 >1KMD-A nrPDB Length = 117 Score = 39.4 bits (90), Expect = 7e-04, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 3/85 (3%) Query: 78 VRRRYSDFEFFRKCLIKE-ISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQ 136 + +RYS+F + L ++ S + + P + + E+I+ERR GL ++ Sbjct: 31 LYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRWQRRYDDPEMIDERRIGLERFLN 90 Query: 137 SVA--GHPLLQSGSKVLVRFIEAEK 159 + +K+ F++ K Sbjct: 91 ELYNDRFDSRWRDTKIAQDFLQLSK 115 >6E8R-A nrPDB Length = 150 Score = 39.0 bits (89), Expect = 0.001, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 28/125 (22%) Query: 58 TDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLP------G 111 + + ++ LP F + V R++ +F + ++ P P Sbjct: 24 VKFTVQTKSCLPHFAQTEFSVVRQHEEFIWLHDAYVENEEYAGLIIPPAPPRPDFEASRE 83 Query: 112 KILLSNRFS-----NEVIEERRQGLNT---------------WMQSVAGHPLLQSGSKVL 151 K+ E + +Q L ++Q +A HP L+ Sbjct: 84 KLQKLGEGDSSVTREEFAKM-KQELEAEYLAIFKKTVAMHEVFLQRLAAHPTLRRDHNFF 142 Query: 152 VRFIE 156 V F+E Sbjct: 143 V-FLE 146 >1GD5-A nrPDB Length = 130 Score = 36.3 bits (82), Expect = 0.006, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 7/89 (7%) Query: 72 HKRVSKVRRRYSDFEFFRKCLIKEIS----MLNHPKVMVPHLPGKILLSNRFSNEVIEER 127 V RR+++ F K L + +N ++PHLP + + E R Sbjct: 36 DLSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWFDGQRAA---ENR 92 Query: 128 RQGLNTWMQSVAGHPLLQSGSKVLVRFIE 156 + L + ++ P S L+ F + Sbjct: 93 QGTLTEYCSTLMSLPTKISRCPHLLDFFK 121 >3L2D-A nrPDB Length = 390 Score = 35.1 bits (79), Expect = 0.012, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 51/154 (33%), Gaps = 21/154 (13%) Query: 19 GHGEPSYSEIYAEPENFLEIEVHNPKTHIPNGMDSKGMF--------TDYEIICRTNL-- 68 GH +P S + +NF ++ HN + + ++ +T + Sbjct: 15 GHSKPWESGKFKAADNFPDLSKHNNVMASQLTKELYEKYWDKVTPNGVTFDKCIQTGVDN 74 Query: 69 ---PSFHKRVSKV------RRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRF 119 + K+ V Y +F F KC+ + K P L L+ F Sbjct: 75 PGNKFYGKKTGCVFGDEYSYECYKEF--FDKCIEEIHHFKPSDKHPAPDLDHNKLVGGVF 132 Query: 120 SNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVR 153 ++ ++ R ++ V P + + LV Sbjct: 133 EDKYVKSCRIRCGRSVKGVCLPPAMSRAERRLVE 166 >2REA-A nrPDB Length = 121 Score = 34.8 bits (78), Expect = 0.019, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 5/81 (6%) Query: 76 SKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWM 135 S V R + +F+ L + P +P P +++L +V +R+ LN+++ Sbjct: 38 SFVFRTFDEFQELHNKLS-----IIFPLWKLPGFPNRMVLGRTHIKDVAAKRKIELNSYL 92 Query: 136 QSVAGHPLLQSGSKVLVRFIE 156 QS+ + ++ F Sbjct: 93 QSLMNASTDVAECDLVCTFFH 113 >2IWL-X nrPDB Length = 140 Score = 34.0 bits (76), Expect = 0.033, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 9/91 (9%) Query: 76 SKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWM 135 S V R + +F+ L + P +P P +++L +V +R+ LN+++ Sbjct: 53 SFVFRTFDEFQELHNKLS-----IIFPLWKLPGFPNRMVLGRTHIKDVAAKRKIELNSYL 107 Query: 136 QSVAGHPLLQSGSKVLVRF----IEAEKFVG 162 QS+ + ++ F + EK G Sbjct: 108 QSLMNASTDVAECDLVCTFFHPLLRDEKAEG 138 >2CZO-A nrPDB Length = 155 Score = 33.2 bits (74), Expect = 0.055, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 39/91 (42%), Gaps = 12/91 (13%) Query: 74 RVSKVRRRYSDFEFFRKCLIKEISMLN---------HPKVMVPHLPGKILLSNRFSNEVI 124 + +++R Y DF + L+ K ++P++PG + +N + Sbjct: 47 KTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPYIPGPVPY---VTNSIT 103 Query: 125 EERRQGLNTWMQSVAGHPLLQSGSKVLVRFI 155 ++R++ LN ++ + P S S+++ Sbjct: 104 KKRKEDLNIYVADLVNLPDYISRSEMVHSLF 134 >1UA7-A nrPDB Length = 422 Score = 30.9 bits (68), Expect = 0.28, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 18/40 (45%) Query: 110 PGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSK 149 PGK + +R S ++ +N + +AG P S + Sbjct: 314 PGKSQIGDRGSALFEDQAITAVNRFHNVMAGQPEELSNPQ 353 >4XBH-A nrPDB Length = 696 Score = 28.2 bits (61), Expect = 1.7, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 4/71 (5%) Query: 81 RYSDFEFFRKCLI---KEISMLNHPKVMVPHLPGKILLSNRFSNEVIEER-RQGLNTWMQ 136 RYS+F+ R L K++ + +V K L + + I+ R Q L + Sbjct: 49 RYSNFDILRDELEVILKDVLQEPKTEDIVAVQKAKTLYRSCVNETAIDSRGGQPLLKLLP 108 Query: 137 SVAGHPLLQSG 147 V G P+ Sbjct: 109 DVYGWPVATQN 119 >5WAX-A nrPDB Length = 310 Score = 27.4 bits (59), Expect = 3.0, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 2 PREFKSFGSTEKSLLSKGHGEPSYSEIYAEPENFLE-IEVHNPKTHIP 48 P E K+F T + +L + P Y I E ++ + I V NP T I Sbjct: 212 PDEPKNFRKTIQRILGVQYSIPDYVHISPECQDLISRIFVANPATRIT 259 >4V7E-BL nrPDB Length = 160 Score = 27.4 bits (59), Expect = 3.0, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 14/45 (31%) Query: 61 EIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVM 105 II T + R VRR Y F + K S + Sbjct: 70 RIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSP 114 >5U4I-v nrPDB Length = 383 Score = 27.4 bits (59), Expect = 3.1, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 4/78 (5%) Query: 60 YEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRF 119 +EI N S V R Y D++ ++ L + + L P V + L R Sbjct: 20 FEINPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERS 79 Query: 120 S----NEVIEERRQGLNT 133 S + +++ +QGL Sbjct: 80 SLEAVVDTLDQMKQGLED 97 >5NYB-A nrPDB Length = 283 Score = 27.4 bits (59), Expect = 3.1, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 102 PKVMVPHLPGKILLSNRFSNEVIEERRQGLNT 133 P ++V LP + + S + +++RR L+ Sbjct: 249 PGLLVVDLPDQSQDAGSDSADYLQDRRAELHR 280 >4V3P-SP nrPDB Length = 85 Score = 27.1 bits (58), Expect = 3.3, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 14/45 (31%) Query: 61 EIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVM 105 II T + R VRR Y F + K S + Sbjct: 31 RIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSP 75 >4EZI-A nrPDB Length = 377 Score = 25.9 bits (55), Expect = 8.4, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 4/44 (9%) Query: 79 RRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFSNE 122 R+YSDF + + + HP V L ++ +F + Sbjct: 333 FRKYSDFVWIKSVSDALDHVQAHPFV----LKEQVDFFKQFERQ 372 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.309 0.125 0.326 Lambda K H 0.267 0.0383 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,928,856 Number of Sequences: 36641 Number of extensions: 207881 Number of successful extensions: 699 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 15 Number of HSP's that attempted gapping in prelim test: 566 Number of HSP's gapped (non-prelim): 73 length of query: 162 length of database: 10,336,785 effective HSP length: 89 effective length of query: 73 effective length of database: 7,075,736 effective search space: 516528728 effective search space used: 516528728 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 55 (25.9 bits)