BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q08285 (240 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 5OKZ-G nrPDB 496 e-141 2JA9-A nrPDB 362 e-101 6D6Q-G nrPDB 122 2e-28 2BA0-A nrPDB 47 6e-06 2JEB-I nrPDB 39 0.001 6D6R-H nrPDB 38 0.003 2Z0S-A nrPDB 36 0.014 3A9U-A nrPDB 32 0.23 5JEA-H nrPDB 32 0.25 4OO1-H nrPDB 32 0.34 4V8R-AE nrPDB 30 0.98 3PL3-A nrPDB 28 2.4 5TX1-M nrPDB 27 6.9 >5OKZ-G nrPDB Length = 244 Score = 496 bits (1278), Expect = e-141, Method: Compositional matrix adjust. Identities = 240/240 (100%), Positives = 240/240 (100%) Query: 1 MSTFIFPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYS 60 MSTFIFPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYS Sbjct: 5 MSTFIFPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYS 64 Query: 61 SKRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVY 120 SKRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVY Sbjct: 65 SKRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVY 124 Query: 121 ARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAA 180 ARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAA Sbjct: 125 ARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAA 184 Query: 181 HTKFEVAIGLNGKIWVKCEELSNTLACYRTIMECCQKNDTAAFKDIAKRQFKEILTVKEE 240 HTKFEVAIGLNGKIWVKCEELSNTLACYRTIMECCQKNDTAAFKDIAKRQFKEILTVKEE Sbjct: 185 HTKFEVAIGLNGKIWVKCEELSNTLACYRTIMECCQKNDTAAFKDIAKRQFKEILTVKEE 244 >2JA9-A nrPDB Length = 175 Score = 362 bits (930), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/175 (100%), Positives = 175/175 (100%) Query: 62 KRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYA 121 KRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYA Sbjct: 1 KRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYA 60 Query: 122 RVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAH 181 RVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAH Sbjct: 61 RVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAH 120 Query: 182 TKFEVAIGLNGKIWVKCEELSNTLACYRTIMECCQKNDTAAFKDIAKRQFKEILT 236 TKFEVAIGLNGKIWVKCEELSNTLACYRTIMECCQKNDTAAFKDIAKRQFKEILT Sbjct: 121 TKFEVAIGLNGKIWVKCEELSNTLACYRTIMECCQKNDTAAFKDIAKRQFKEILT 175 >6D6Q-G nrPDB Length = 277 Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 67/188 (35%), Positives = 102/188 (54%), Gaps = 5/188 (2%) Query: 43 HVSAKGKSGVQTAYIDYSSKRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAF 102 H SG ++D KRY+P D VIG++ D +KV + S SLSY++F Sbjct: 90 HKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGG-SEPASLSYLSF 148 Query: 103 PNASKKNRPTLQVGDLVYARVCTAEKELEAEIECFDSTTGRDAGFGIL-EDGMIIDVNLN 161 A+K+NRP +QVGDL+Y + A K++E E+ C DS GR G G++ +DG++ V L Sbjct: 149 EGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDS-CGRANGMGVIGQDGLLFKVTLG 207 Query: 162 FARQLLFNNDFPLLKVLAAHTKFEVAIGLNGKIWVKCEELSNTLACYRTIMECCQKNDTA 221 R+LL D +++ + E+ G+NG+IWVK + + TL I+E C+ + Sbjct: 208 LIRKLL-APDCEIIQEVGKLHPLEIVFGMNGRIWVKAKTIQQTL-ILANILEACEHMTSD 265 Query: 222 AFKDIAKR 229 K I R Sbjct: 266 QRKQIFSR 273 >2BA0-A nrPDB Length = 229 Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 21/208 (10%) Query: 1 MSTFIFPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYS 60 M + PGD T P G G Y + V ++ + + ++ V+ + Sbjct: 1 MRKIVLPGDLLS---TNPRAAGYGTYVEGGK-----VYAKIIGLFDQTETHVRVIPL--- 49 Query: 61 SKRYIPSVNDFVIGVIIGTFSDSYKVSLQN-FSSSVSLSYMAFPNASKKNRPTLQVGDLV 119 RY PSV D VIG+I ++ + V + + + + + +S +KK L +GD + Sbjct: 50 KGRYTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAI 109 Query: 120 YARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFAR-QLLFNNDFPLLKVL 178 A+V + +++ + D R FG + V +N AR + ++K+L Sbjct: 110 IAKVLNIDPKMKVTLTMKDRIC-RPIRFGRI-------VAINPARVPRVIGKKGSMIKLL 161 Query: 179 AAHTKFEVAIGLNGKIWVKCEELSNTLA 206 + ++ +G NG IWV + ++A Sbjct: 162 KSELDVQIVVGQNGLIWVNGDRRKVSIA 189 >2JEB-I nrPDB Length = 251 Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 24/145 (16%) Query: 64 YIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNAS----------KKNRPTL 113 Y P +ND VIG++ V + + + Y A+ AS + R L Sbjct: 70 YYPKINDIVIGLV-------EDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYL 122 Query: 114 QVGDLVYARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFP 173 VGD V AR+ + + I+ S G+D G + +G++ID+ +++ N Sbjct: 123 DVGDYVIARI----ENFDRSIDPVLSVKGKD--LGRVSNGIVIDIMPVKVPRVIGKNK-S 175 Query: 174 LLKVLAAHTKFEVAIGLNGKIWVKC 198 + + L + + + + NG+IW C Sbjct: 176 MYETLTSKSGCSIFVANNGRIWATC 200 >6D6R-H nrPDB Length = 296 Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 55/145 (37%), Gaps = 25/145 (17%) Query: 63 RYIPSVNDFVIGVIIGTFSDSYKVSLQN-FSSSVSLSYMAFPNASKKNRPT--------- 112 RYI V D V+G I +KV + S + LS M P + R Sbjct: 78 RYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGF 137 Query: 113 LQVGDLVYARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFA-RQLLFNND 171 LQ GDL+ A V + + R +G L G+++ V+ + RQ +D Sbjct: 138 LQEGDLISAEVQAVFSDGAVSLHT------RSLKYGKLGQGVLVQVSPSLVKRQKTHFHD 191 Query: 172 FPLLKVLAAHTKFEVAIGLNGKIWV 196 P V +G NG IW+ Sbjct: 192 LP--------CGASVILGNNGFIWI 208 >2Z0S-A nrPDB Length = 235 Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust. Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 35/151 (23%) Query: 64 YIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMA-----------FPNASKKNRPT 112 Y+P D VIG+I V + N+ ++ Y+A F A + Sbjct: 62 YVPQAGDVVIGLI-------QSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSL 114 Query: 113 LQVGDLVYARVCTAEKELEAEIECFDST-----TGRDAGFGILEDGMIIDVNLNFARQLL 167 L+VGD + A+V FD T T + G G + G I++++ +++ Sbjct: 115 LKVGDYIKAKVV-----------AFDKTRSPLLTVQGEGLGRIVRGKIVEISPAKVPRVI 163 Query: 168 FNNDFPLLKVLAAHTKFEVAIGLNGKIWVKC 198 +LK L T+ ++ + NG+I ++C Sbjct: 164 -GRKMSMLKTLEEKTECKIFVARNGRIHLEC 193 >3A9U-A nrPDB Length = 536 Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 4/95 (4%) Query: 71 FVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKEL 130 F IG ++G + YKVS+ V +S P+ K + +L+ ++ + KEL Sbjct: 258 FEIGSLLGLI-EKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLR---MIKSGGAPLGKEL 313 Query: 131 EAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQ 165 E + G+G+ E G ++ + L FA++ Sbjct: 314 EDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKE 348 >5JEA-H nrPDB Length = 316 Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust. Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 25/146 (17%) Query: 63 RYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSV-SLSYMAFPNASKKN---------RPT 112 RY P D V+G I + +KV + +V L + P + R Sbjct: 60 RYAPETGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSF 119 Query: 113 LQVGDLVYARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNF-ARQLLFNND 171 L+ GDL+ A V + ++ A + R +G L +GM V + R ++ Sbjct: 120 LKEGDLLNAEVQSLFQDGSASLHT------RSLKYGKLRNGMFCQVPSSLIVRAKNHTHN 173 Query: 172 FPLLKVLAAHTKFEVAIGLNGKIWVK 197 P V +G+NG IW++ Sbjct: 174 LP--------GNITVVLGVNGYIWLR 191 >4OO1-H nrPDB Length = 363 Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust. Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 25/146 (17%) Query: 63 RYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSV-SLSYMAFPNASKKN---------RPT 112 RY P D V+G I + +KV + +V L + P + R Sbjct: 107 RYAPETGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSF 166 Query: 113 LQVGDLVYARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNF-ARQLLFNND 171 L+ GDL+ A V + ++ A + R +G L +GM V + R ++ Sbjct: 167 LKEGDLLNAEVQSLFQDGSASLHT------RSLKYGKLRNGMFCQVPSSLIVRAKNHTHN 220 Query: 172 FPLLKVLAAHTKFEVAIGLNGKIWVK 197 P V +G+NG IW++ Sbjct: 221 LP--------GNITVVLGVNGYIWLR 238 >4V8R-AE nrPDB Length = 562 Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust. Identities = 13/40 (32%), Positives = 21/40 (52%) Query: 163 ARQLLFNNDFPLLKVLAAHTKFEVAIGLNGKIWVKCEELS 202 A LL ND P ++ + +AI NG+I + ++LS Sbjct: 331 ANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLS 370 >3PL3-A nrPDB Length = 437 Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 23/152 (15%) Query: 27 CDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYIPSVNDFVI--GVIIGTFSDSY 84 CDP+ + P G GK ID + + V F+ G GT S+ Sbjct: 253 CDPDGCDFNPYRMGNTSFYGPGK------IIDTTKPFTV--VTQFLTDDGTDTGTLSEIK 304 Query: 85 KVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIECFDSTTGRD 144 + +QN S+V + PN+ G+ + CTA+K+ + + F G Sbjct: 305 RFYIQN--SNV----IPQPNSDISGV----TGNSITTEFCTAQKQAFGDTDDFSQHGGLA 354 Query: 145 AGFGILEDGMIIDVNL--NFARQLLF-NNDFP 173 ++ GM++ ++L ++A Q+L+ ++D+P Sbjct: 355 KMGAAMQQGMVLVMSLWDDYAAQMLWLDSDYP 386 >5TX1-M nrPDB Length = 388 Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust. Identities = 17/70 (24%), Positives = 34/70 (48%) Query: 22 GPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYIPSVNDFVIGVIIGTFS 81 GP + + Q ++ VN + +G GVQ D S+ + + N ++ ++I F+ Sbjct: 180 GPDYFFQTSRQGLQTVNLSQAFKNLRGLWGVQAPVGDRSTVSSLLTPNSRLLLLLIAPFT 239 Query: 82 DSYKVSLQNF 91 DS V+ ++ Sbjct: 240 DSGSVNRNSY 249 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 5OKZ-G nrPDB 376 e-105 2JA9-A nrPDB 267 3e-72 6D6Q-G nrPDB 246 8e-66 2BA0-A nrPDB 223 5e-59 2JEB-I nrPDB 153 9e-38 Sequences not found previously or not previously below threshold: 2Z0S-A nrPDB 89 2e-18 5JEA-H nrPDB 62 3e-10 4OO1-H nrPDB 62 3e-10 6D6R-H nrPDB 59 1e-09 1GO3-E nrPDB 33 0.14 5L0W-A nrPDB 29 1.9 4C2L-A nrPDB 29 1.9 >5OKZ-G nrPDB Length = 244 Score = 376 bits (964), Expect = e-105, Method: Composition-based stats. Identities = 240/240 (100%), Positives = 240/240 (100%) Query: 1 MSTFIFPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYS 60 MSTFIFPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYS Sbjct: 5 MSTFIFPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYS 64 Query: 61 SKRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVY 120 SKRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVY Sbjct: 65 SKRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVY 124 Query: 121 ARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAA 180 ARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAA Sbjct: 125 ARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAA 184 Query: 181 HTKFEVAIGLNGKIWVKCEELSNTLACYRTIMECCQKNDTAAFKDIAKRQFKEILTVKEE 240 HTKFEVAIGLNGKIWVKCEELSNTLACYRTIMECCQKNDTAAFKDIAKRQFKEILTVKEE Sbjct: 185 HTKFEVAIGLNGKIWVKCEELSNTLACYRTIMECCQKNDTAAFKDIAKRQFKEILTVKEE 244 >2JA9-A nrPDB Length = 175 Score = 267 bits (682), Expect = 3e-72, Method: Composition-based stats. Identities = 175/175 (100%), Positives = 175/175 (100%) Query: 62 KRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYA 121 KRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYA Sbjct: 1 KRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYA 60 Query: 122 RVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAH 181 RVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAH Sbjct: 61 RVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAH 120 Query: 182 TKFEVAIGLNGKIWVKCEELSNTLACYRTIMECCQKNDTAAFKDIAKRQFKEILT 236 TKFEVAIGLNGKIWVKCEELSNTLACYRTIMECCQKNDTAAFKDIAKRQFKEILT Sbjct: 121 TKFEVAIGLNGKIWVKCEELSNTLACYRTIMECCQKNDTAAFKDIAKRQFKEILT 175 >6D6Q-G nrPDB Length = 277 Score = 246 bits (627), Expect = 8e-66, Method: Composition-based stats. Identities = 67/188 (35%), Positives = 102/188 (54%), Gaps = 5/188 (2%) Query: 43 HVSAKGKSGVQTAYIDYSSKRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAF 102 H SG ++D KRY+P D VIG++ D +KV + S SLSY++F Sbjct: 90 HKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGG-SEPASLSYLSF 148 Query: 103 PNASKKNRPTLQVGDLVYARVCTAEKELEAEIECFDSTTGRDAGFGIL-EDGMIIDVNLN 161 A+K+NRP +QVGDL+Y + A K++E E+ C DS GR G G++ +DG++ V L Sbjct: 149 EGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDS-CGRANGMGVIGQDGLLFKVTLG 207 Query: 162 FARQLLFNNDFPLLKVLAAHTKFEVAIGLNGKIWVKCEELSNTLACYRTIMECCQKNDTA 221 R+LL D +++ + E+ G+NG+IWVK + + TL I+E C+ + Sbjct: 208 LIRKLL-APDCEIIQEVGKLHPLEIVFGMNGRIWVKAKTIQQTL-ILANILEACEHMTSD 265 Query: 222 AFKDIAKR 229 K I R Sbjct: 266 QRKQIFSR 273 >2BA0-A nrPDB Length = 229 Score = 223 bits (568), Expect = 5e-59, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 99/239 (41%), Gaps = 24/239 (10%) Query: 1 MSTFIFPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYS 60 M + PGD T P G G Y + V ++ + + ++ V+ + Sbjct: 1 MRKIVLPGDLLS---TNPRAAGYGTYVEGGK-----VYAKIIGLFDQTETHVRVIPL--- 49 Query: 61 SKRYIPSVNDFVIGVIIGTFSDSYKVSLQN-FSSSVSLSYMAFPNASKKNRPTLQVGDLV 119 RY PSV D VIG+I ++ + V + + + + + +S +KK L +GD + Sbjct: 50 KGRYTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAI 109 Query: 120 YARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFAR-QLLFNNDFPLLKVL 178 A+V + +++ + D R FG + V +N AR + ++K+L Sbjct: 110 IAKVLNIDPKMKVTLTMKDRIC-RPIRFGRI-------VAINPARVPRVIGKKGSMIKLL 161 Query: 179 AAHTKFEVAIGLNGKIWVKCEELSNTL---ACYRTIMECCQKNDTAAFKDIAKRQFKEI 234 + ++ +G NG IWV + ++ A Y E + T + KR+ ++ Sbjct: 162 KSELDVQIVVGQNGLIWVNGDRRKVSIAEEAIYLIEQEAHTEGLTDRVAEFIKRRKADV 220 >2JEB-I nrPDB Length = 251 Score = 153 bits (385), Expect = 9e-38, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 84/214 (39%), Gaps = 40/214 (18%) Query: 2 STFIFPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTG----VLHVSAKGKSGVQTAYI 57 + + PG+ G + P + I +N+ V+ + + + + Sbjct: 16 RSIVVPGELLAE----------GEFQIPWSPYILKINSKYYSTVVGLFDVKDTQFEVIPL 65 Query: 58 DYSSKRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNAS----------K 107 + S Y P +ND VIG++ V + + + Y A+ AS + Sbjct: 66 EGS--FYYPKINDIVIGLV-------EDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGE 116 Query: 108 KNRPTLQVGDLVYARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLL 167 R L VGD V AR+ + + I+ S G+D G + +G++ID+ +++ Sbjct: 117 DLRRYLDVGDYVIARI----ENFDRSIDPVLSVKGKD--LGRVSNGIVIDIMPVKVPRVI 170 Query: 168 FNNDFPLLKVLAAHTKFEVAIGLNGKIWVKCEEL 201 N + + L + + + + NG+IW C Sbjct: 171 GKNK-SMYETLTSKSGCSIFVANNGRIWATCPSR 203 >2Z0S-A nrPDB Length = 235 Score = 88.7 bits (218), Expect = 2e-18, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 96/242 (39%), Gaps = 26/242 (10%) Query: 3 TFIFPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSK 62 + PG+ P + V+ P Y R V+ + + G A++ + Sbjct: 10 RIVVPGEPLPEE----VEASP-PYVIDYKGVKR---ATVVGLLREKGDGGGRAFVKL-KE 60 Query: 63 RYIPSVNDFVIGVIIGTFSDSYKVSLQN-FSSSVSLSY---MAFPNASKKNRPTLQVGDL 118 Y+P D VIG+I ++ V + + + + +S+ F A + L+VGD Sbjct: 61 IYVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDY 120 Query: 119 VYARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVL 178 + A+V + + G G G + G I++++ +++ +LK L Sbjct: 121 IKAKVVA----FDKTRSPLLTVQGE--GLGRIVRGKIVEISPAKVPRVI-GRKMSMLKTL 173 Query: 179 AAHTKFEVAIGLNGKIWVKC-EELSNTLACYRTIMECCQKNDTAAFKDIAK-----RQFK 232 T+ ++ + NG+I ++C E +A + + + K I K R+ + Sbjct: 174 EEKTECKIFVARNGRIHLECPNEDLEAIAVMAIKIIDEEAYTSGLTKRIIKFIEEERRIR 233 Query: 233 EI 234 E+ Sbjct: 234 EV 235 >5JEA-H nrPDB Length = 316 Score = 61.7 bits (148), Expect = 3e-10, Method: Composition-based stats. Identities = 46/215 (21%), Positives = 75/215 (34%), Gaps = 34/215 (15%) Query: 2 STFIFPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSS 61 S + PG+ DP G G Y N + V ++ + + Sbjct: 9 SQIVTPGELVTDDPIWMR--GHGTYFLDNM-----TYSSVAGTVSRVNRLLSVIPL---K 58 Query: 62 KRYIPSVNDFVIGVIIGTFSDSYKVSLQNFS------SSVSLSYMAFPNASK----KNRP 111 RY P D V+G I + +KV + SV+L S+ + R Sbjct: 59 GRYAPETGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRS 118 Query: 112 TLQVGDLVYARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNND 171 L+ GDL+ A V + ++ A + R +G L +GM V L+ Sbjct: 119 FLKEGDLLNAEVQSLFQDGSASLHT------RSLKYGKLRNGMFCQVP----SSLIVRAK 168 Query: 172 FPLLKVLAAHTKFEVAIGLNGKIWVKCEELSNTLA 206 + V +G+NG IW++ + LA Sbjct: 169 NHTHNLPGN---ITVVLGVNGYIWLR-KTSQMDLA 199 >4OO1-H nrPDB Length = 363 Score = 61.7 bits (148), Expect = 3e-10, Method: Composition-based stats. Identities = 46/215 (21%), Positives = 75/215 (34%), Gaps = 34/215 (15%) Query: 2 STFIFPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSS 61 S + PG+ DP G G Y N + V ++ + + Sbjct: 56 SQIVTPGELVTDDPIWMR--GHGTYFLDNM-----TYSSVAGTVSRVNRLLSVIPL---K 105 Query: 62 KRYIPSVNDFVIGVIIGTFSDSYKVSLQNFS------SSVSLSYMAFPNASK----KNRP 111 RY P D V+G I + +KV + SV+L S+ + R Sbjct: 106 GRYAPETGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRS 165 Query: 112 TLQVGDLVYARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNND 171 L+ GDL+ A V + ++ A + R +G L +GM V L+ Sbjct: 166 FLKEGDLLNAEVQSLFQDGSASLHT------RSLKYGKLRNGMFCQVP----SSLIVRAK 215 Query: 172 FPLLKVLAAHTKFEVAIGLNGKIWVKCEELSNTLA 206 + V +G+NG IW++ + LA Sbjct: 216 NHTHNLPGN---ITVVLGVNGYIWLR-KTSQMDLA 246 >6D6R-H nrPDB Length = 296 Score = 59.4 bits (142), Expect = 1e-09, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 66/205 (32%), Gaps = 37/205 (18%) Query: 4 FIFPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKR 63 + PGD+ D G G Y +++ G + K + R Sbjct: 29 LVVPGDTITTDTGFMR--GHGTYM--GEEKLIASVAGSVERVNK------LICVKALKTR 78 Query: 64 YIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRP----------TL 113 YI V D V+G I +KV + SV L + R L Sbjct: 79 YIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFL 138 Query: 114 QVGDLVYARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFP 173 Q GDL+ A V + + R +G L G+++ V+ + ++ Sbjct: 139 QEGDLISAEVQAVFSDGAVSLHT------RSLKYGKLGQGVLVQVSPSLVKRQ------- 185 Query: 174 LLKVLAAHTKF--EVAIGLNGKIWV 196 K V +G NG IW+ Sbjct: 186 --KTHFHDLPCGASVILGNNGFIWI 208 >1GO3-E nrPDB Length = 187 Score = 32.8 bits (73), Expect = 0.14, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 10/113 (8%) Query: 49 KSGVQTAYIDYSSKRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLS-----YMAFP 103 G + + + YIP + + + G ++ V L + +S Y+++ Sbjct: 62 GDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYD 121 Query: 104 NA-----SKKNRPTLQVGDLVYARVCTAEKELEAEIECFDSTTGRDAGFGILE 151 K+ L++GD V AR+ + E + + T R G LE Sbjct: 122 PKREAIIGKETGKVLEIGDYVRARIVAISLKAERKRGSKIALTMRQPYLGKLE 174 >5L0W-A nrPDB Length = 184 Score = 29.0 bits (63), Expect = 1.9, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 26/150 (17%) Query: 19 VKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYIPSVNDFVI--GVI 76 K G +Y + + R + +LH+ + + P V D VI ++ Sbjct: 18 KKAGENLYFQGSHLQ-RNIYLSLLHMEPEEG------------QEKAPKVPDSVIRAALL 64 Query: 77 IGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEI-E 135 D +++ +Q ++ + S + + VGD ++ R AEKE+E E+ + Sbjct: 65 RRAVEDIHRI-IQIRTAKAACSTLLQRGS---------VGDDLWQRFLRAEKEMEDELRD 114 Query: 136 CFDSTTGRDAGFGILEDGMIIDVNLNFARQ 165 G+G + ++ N + Sbjct: 115 VVMEANALVPGWGQIIFQSANEIAANKVLR 144 >4C2L-A nrPDB Length = 388 Score = 29.0 bits (63), Expect = 1.9, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 3/96 (3%) Query: 63 RYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYAR 122 + PS D + + + V +++ + Y + ++N ++ D+V + Sbjct: 268 KTYPSGGDHGTSTVSNVTFNDFTVDNSDYAFQIQSCYGEDDDYCEENPGNAKLTDIVVSS 327 Query: 123 VC-TAEKELEAEIECFDSTTGRDAGFGILEDGMIID 157 T + + + D G D GI G + Sbjct: 328 FSGTTSDKYDPVVANLD--CGADGTCGISISGFDVK 361 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.310 0.124 0.305 Lambda K H 0.267 0.0385 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,812,204 Number of Sequences: 36641 Number of extensions: 276496 Number of successful extensions: 748 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 14 Number of HSP's that attempted gapping in prelim test: 708 Number of HSP's gapped (non-prelim): 31 length of query: 240 length of database: 10,336,785 effective HSP length: 94 effective length of query: 146 effective length of database: 6,892,531 effective search space: 1006309526 effective search space used: 1006309526 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 57 (26.7 bits)