BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q07923 (191 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 1T0I-A nrPDB 390 e-109 2GSW-A nrPDB 54 6e-08 3SVL-A nrPDB 51 2e-07 1X77-A nrPDB 44 4e-05 2OKT-A nrPDB 31 0.31 4ESE-A nrPDB 29 1.2 1T5B-A nrPDB 29 1.3 4N9Q-A nrPDB 29 1.4 4F8Y-A nrPDB 28 1.6 1QVS-A nrPDB 28 1.9 3W78-A nrPDB 28 3.0 3MTI-A nrPDB 28 3.6 1PMI-A nrPDB 27 3.7 1QRD-A nrPDB 27 3.8 4W6V-A nrPDB 27 4.7 6DQP-A nrPDB 27 4.9 4XVM-A nrPDB 27 6.1 4C0X-A nrPDB 27 6.9 4X6G-A nrPDB 27 6.9 5A4K-A nrPDB 26 8.9 >1T0I-A nrPDB Length = 191 Score = 390 bits (1003), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/191 (100%), Positives = 191/191 (100%) Query: 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELI 60 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELI Sbjct: 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELI 60 Query: 61 PAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYHEWHGKPAL 120 PAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYHEWHGKPAL Sbjct: 61 PAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYHEWHGKPAL 120 Query: 121 VVSYGGHGGSKCNDQLQEVLHGLKMNVIGGVAVKIPVGTIPLPEDIVPQLSVHNEEILQL 180 VVSYGGHGGSKCNDQLQEVLHGLKMNVIGGVAVKIPVGTIPLPEDIVPQLSVHNEEILQL Sbjct: 121 VVSYGGHGGSKCNDQLQEVLHGLKMNVIGGVAVKIPVGTIPLPEDIVPQLSVHNEEILQL 180 Query: 181 LASCIETTRNK 191 LASCIETTRNK Sbjct: 181 LASCIETTRNK 191 >2GSW-A nrPDB Length = 182 Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 13/110 (11%) Query: 42 VVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQYNWGYPA 101 ++DL + LP++ + E +++ V E T++ D IV ++P+Y+ G Sbjct: 31 LIDLSEFVLPVFNGEAE--QSELLKVQELKQRVTKA--------DAIVLLSPEYHSGMSG 80 Query: 102 ALKNAIDRLYHE-WHGKPA--LVVSYGGHGGSKCNDQLQEVLHGLKMNVI 148 ALKNA+D L E + KP L V+ GG GG + ++ V+ G+ NVI Sbjct: 81 ALKNALDFLSSEQFKYKPVALLAVAGGGKGGINALNNMRTVMRGVYANVI 130 >3SVL-A nrPDB Length = 193 Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 20/100 (20%) Query: 50 LPLYEDD---DELIPAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQYNWGYPAALKNA 106 +PLY+ D +E PA ++++ E + D +V VTP+YN+ P LKNA Sbjct: 46 IPLYDADVQQEEGFPATVEALAEQ-----------IRQADGVVIVTPEYNYSVPGGLKNA 94 Query: 107 IDRLY----HEWHGKPALV--VSYGGHGGSKCNDQLQEVL 140 ID L GKP L+ S G GG++C L+++L Sbjct: 95 IDWLSRLPDQPLAGKPVLIQTSSMGVIGGARCQYHLRQIL 134 >1X77-A nrPDB Length = 193 Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 28/148 (18%) Query: 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELI 60 +KV I GS+R+ +Y ++ + L+ + I++ D+ I PLY +D + Sbjct: 7 IKVLGISGSLRS-------GSYNSAALQEAIGLVPPGMSIELADISGI--PLYNEDVYAL 57 Query: 61 --PAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLY----HEW 114 P ++ E + A D ++F TP+YN+ LKNAID + Sbjct: 58 GFPPAVERFREQ-----------IRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPF 106 Query: 115 HGKPALVV--SYGGHGGSKCNDQLQEVL 140 GKPA ++ S G G ++ L++ L Sbjct: 107 SGKPAAILGASAGRFGTARAQYHLRQTL 134 >2OKT-A nrPDB Length = 342 Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 10/110 (9%) Query: 32 ELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDE--YADSKTRSWSRIVNALDIIV 89 ELID K + Y D E I A +K V E + D++ +S+ AL ++ Sbjct: 36 ELIDDKGNAYFGECNAFQTDWY--DHETI-ASVKHVIEQWFEDNRNKSFETYEAALKLVD 92 Query: 90 FVTPQYNWGYPAALKNAIDRLYHEWHGKPALVVSYGGHGGSKCNDQLQEV 139 + PAA + LY +H P+ V+YG N QL+ + Sbjct: 93 SLE-----NTPAARATIVMALYQMFHVLPSFSVAYGATASGLSNKQLESL 137 >4ESE-A nrPDB Length = 204 Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust. Identities = 12/29 (41%), Positives = 16/29 (55%) Query: 82 VNALDIIVFVTPQYNWGYPAALKNAIDRL 110 + A D+IV P YN+ P LKN D + Sbjct: 87 LQANDVIVIAAPMYNFNIPTQLKNYFDMI 115 >1T5B-A nrPDB Length = 201 Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust. Identities = 12/27 (44%), Positives = 15/27 (55%) Query: 82 VNALDIIVFVTPQYNWGYPAALKNAID 108 + A D+IV P YN+ P LKN D Sbjct: 84 LKAHDVIVIAAPMYNFNIPTQLKNYFD 110 >4N9Q-A nrPDB Length = 212 Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust. Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 86 DIIVFVTPQYNWGYPAALKNAIDRL 110 D++V TP YN+ P+ LK ID++ Sbjct: 89 DLLVISTPMYNFSVPSGLKAWIDQI 113 >4F8Y-A nrPDB Length = 196 Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 8/50 (16%) Query: 62 AQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLY 111 A++ +++Y D +V D ++F+ P + G PA LK IDR++ Sbjct: 59 AKVAEMEKYRD--------LVTWADHLIFIFPIWWSGMPAILKGFIDRVF 100 >1QVS-A nrPDB Length = 309 Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 4/100 (4%) Query: 95 YNWGYPAALKNAIDRLYHEWHGKPALVVSYGGHG---GSKCNDQLQEVLHGLKMNVIGGV 151 YN ++N RLY H P +VSY G SK + Q+ + L + G Sbjct: 198 YNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQAEAQKFVDFL-ASKKGQE 256 Query: 152 AVKIPVGTIPLPEDIVPQLSVHNEEILQLLASCIETTRNK 191 A+ PL D+V ++ E L+ T ++K Sbjct: 257 ALVAARAEYPLRADVVSPFNLEPYEKLEAPVVSATTAQDK 296 >3W78-A nrPDB Length = 211 Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust. Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 86 DIIVFVTPQYNWGYPAALKNAIDRL 110 D VFVTP +N+ YP +K +D + Sbjct: 94 DRYVFVTPMWNFSYPPVVKAYLDNV 118 >3MTI-A nrPDB Length = 185 Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Query: 102 ALKNAIDRLYHEWHGKPALVVSYGGHGGSKCNDQLQEVLHGLKMNVIGGVAVKIPVGTIP 161 A++ +DRL E G+ A+++ YG GG D + E + GL V + + P+ I Sbjct: 117 AIEKILDRL--EVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQ-PLNQIN 173 Query: 162 LPEDIV 167 P +V Sbjct: 174 TPPFLV 179 >1PMI-A nrPDB Length = 440 Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 5/84 (5%) Query: 101 AALKNAIDRLYHEWHGKPAL---VVSYGGHGGSKCNDQLQEVLHGL-KMN-VIGGVAVKI 155 A L A + Y + + KP + V + G G K DQL + L + ++N +IG V Sbjct: 119 AQLHAADPKNYPDDNHKPEMAIAVTDFEGFCGFKPLDQLAKTLATVPELNEIIGQELVDE 178 Query: 156 PVGTIPLPEDIVPQLSVHNEEILQ 179 + I LP ++ Q V+N ++LQ Sbjct: 179 FISGIKLPAEVGSQDDVNNRKLLQ 202 >1QRD-A nrPDB Length = 273 Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 18/29 (62%) Query: 82 VNALDIIVFVTPQYNWGYPAALKNAIDRL 110 + A D+++F P Y +G PA LK +R+ Sbjct: 91 LEAADLVIFQFPLYWFGVPAILKGWFERV 119 >4W6V-A nrPDB Length = 519 Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust. Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Query: 78 WSRIVNALDIIVFVTPQYNWGYPAALKNAID 108 W + +NAL II+ + P ++W +PA K I Sbjct: 339 WFQSINALFIIL-LAPVFSWAWPALAKKKIQ 368 >6DQP-A nrPDB Length = 190 Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Query: 76 RSWSRIVNALDIIVFVTPQYNWGYPAALKNAIDRL-YHEWHGKPALVVSYGGHGGSKCN- 133 ++++ + D ++ TP Y Y ALK +D L GK L ++ GG Sbjct: 58 KTFTEQLQQADGLIVATPVYKAAYSGALKTLLDLLPERALQGKVVLPLATGGTVAHLLAV 117 Query: 134 DQLQEVLHGLKMNVI 148 D L+ VL LK I Sbjct: 118 DALKPVLSALKAQEI 132 >4XVM-A nrPDB Length = 666 Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust. Identities = 12/26 (46%), Positives = 20/26 (76%) Query: 17 PEIAAYVKRTIENSEELIDQKLKIQV 42 PE AA V+RT+E+ E++ +L++QV Sbjct: 622 PECAALVRRTMESLEQVQALELQLQV 647 >4C0X-A nrPDB Length = 203 Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust. Identities = 12/27 (44%), Positives = 15/27 (55%) Query: 84 ALDIIVFVTPQYNWGYPAALKNAIDRL 110 A D +V P YN+ P LK IDR+ Sbjct: 85 AADAVVIGAPMYNFTVPTQLKAWIDRV 111 >4X6G-A nrPDB Length = 316 Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Query: 14 RVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDD 56 RV P++ Y++ EN ++ KL+ +D IALP E D Sbjct: 121 RVAPQMPLYIE---ENFTHILRDKLRTGELDAIIIALPFQEAD 160 >5A4K-A nrPDB Length = 294 Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 20/82 (24%) Query: 82 VNALDIIVFVTPQYNWGYPAALKNAIDRLY---------------HEWHGKPALVVSYGG 126 + A D+++F P +G PA LK +R++ W K L ++ GG Sbjct: 112 LEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFWSKKAVLSITTGG 171 Query: 127 HGGSKCNDQLQEVLHGLKMNVI 148 G LQ + HG MNVI Sbjct: 172 SGSMYS---LQGI-HG-DMNVI 188 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 1T0I-A nrPDB 321 1e-88 1X77-A nrPDB 152 8e-38 2GSW-A nrPDB 124 3e-29 3SVL-A nrPDB 107 4e-24 Sequences not found previously or not previously below threshold: 6DQP-A nrPDB 49 1e-06 2Q62-A nrPDB 46 1e-05 4C0X-A nrPDB 37 0.007 4ESE-A nrPDB 36 0.008 3B6J-A nrPDB 36 0.011 3W78-A nrPDB 36 0.012 1T5B-A nrPDB 36 0.015 2Z98-A nrPDB 35 0.022 4LA4-A nrPDB 33 0.094 4F8Y-A nrPDB 32 0.13 4N9Q-A nrPDB 32 0.15 1QRD-A nrPDB 32 0.23 5LBT-A nrPDB 31 0.28 3FAY-A nrPDB 31 0.29 2ZKI-A nrPDB 31 0.41 2DU7-A nrPDB 29 0.92 3FRY-A nrPDB 28 2.1 6GKR-A nrPDB 28 2.2 5W21-A nrPDB 28 2.4 5LO9-A nrPDB 28 2.5 5A4K-A nrPDB 28 2.7 4KQQ-A nrPDB 27 4.1 4POC-A nrPDB 27 5.4 >1T0I-A nrPDB Length = 191 Score = 321 bits (822), Expect = 1e-88, Method: Composition-based stats. Identities = 191/191 (100%), Positives = 191/191 (100%) Query: 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELI 60 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELI Sbjct: 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELI 60 Query: 61 PAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYHEWHGKPAL 120 PAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYHEWHGKPAL Sbjct: 61 PAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYHEWHGKPAL 120 Query: 121 VVSYGGHGGSKCNDQLQEVLHGLKMNVIGGVAVKIPVGTIPLPEDIVPQLSVHNEEILQL 180 VVSYGGHGGSKCNDQLQEVLHGLKMNVIGGVAVKIPVGTIPLPEDIVPQLSVHNEEILQL Sbjct: 121 VVSYGGHGGSKCNDQLQEVLHGLKMNVIGGVAVKIPVGTIPLPEDIVPQLSVHNEEILQL 180 Query: 181 LASCIETTRNK 191 LASCIETTRNK Sbjct: 181 LASCIETTRNK 191 >1X77-A nrPDB Length = 193 Score = 152 bits (384), Expect = 8e-38, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 28/148 (18%) Query: 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDE-- 58 +KV I GS+R+ +Y ++ + L+ + I++ D+ I PLY +D Sbjct: 7 IKVLGISGSLRS-------GSYNSAALQEAIGLVPPGMSIELADISGI--PLYNEDVYAL 57 Query: 59 LIPAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLY----HEW 114 P ++ E + A D ++F TP+YN+ LKNAID + Sbjct: 58 GFPPAVERFREQ-----------IRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPF 106 Query: 115 HGKPALVV--SYGGHGGSKCNDQLQEVL 140 GKPA ++ S G G ++ L++ L Sbjct: 107 SGKPAAILGASAGRFGTARAQYHLRQTL 134 >2GSW-A nrPDB Length = 182 Score = 124 bits (310), Expect = 3e-29, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 24/160 (15%) Query: 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELI 60 M + +I G+ R A+Y+ ++DL + LP++ + E Sbjct: 1 MNMLVINGTPRKHGRTRIAASYIAALYHT-----------DLIDLSEFVLPVFNGEAE-- 47 Query: 61 PAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYHE-WHGKPA 119 +++ V E T+ D IV ++P+Y+ G ALKNA+D L E + KP Sbjct: 48 QSELLKVQELKQRVTK--------ADAIVLLSPEYHSGMSGALKNALDFLSSEQFKYKPV 99 Query: 120 --LVVSYGGHGGSKCNDQLQEVLHGLKMNVIGGVAVKIPV 157 L V+ GG GG + ++ V+ G+ NVI V PV Sbjct: 100 ALLAVAGGGKGGINALNNMRTVMRGVYANVIPKQLVLDPV 139 >3SVL-A nrPDB Length = 193 Score = 107 bits (266), Expect = 4e-24, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 28/157 (17%) Query: 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDD---D 57 ++V ++GS+R ++ ++ +++ + +PLY+ D + Sbjct: 5 LQVVTLLGSLRK-------GSFNGMVARTLPKIAPASMEVNALP-SIADIPLYDADVQQE 56 Query: 58 ELIPAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLY----HE 113 E PA ++++ E + D +V VTP+YN+ P LKNAID L Sbjct: 57 EGFPATVEALAEQ-----------IRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQP 105 Query: 114 WHGKPALV--VSYGGHGGSKCNDQLQEVLHGLKMNVI 148 GKP L+ S G GG++C L+++L L V+ Sbjct: 106 LAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDAMVM 142 >6DQP-A nrPDB Length = 190 Score = 48.6 bits (114), Expect = 1e-06, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 2/106 (1%) Query: 45 LQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQYNWGYPAALK 104 L + + +Y + + + + ++++ + D ++ TP Y Y ALK Sbjct: 27 LNGLDVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLQQADGLIVATPVYKAAYSGALK 86 Query: 105 NAIDRL-YHEWHGKPALVVSYGG-HGGSKCNDQLQEVLHGLKMNVI 148 +D L GK L ++ GG D L+ VL LK I Sbjct: 87 TLLDLLPERALQGKVVLPLATGGTVAHLLAVDALKPVLSALKAQEI 132 >2Q62-A nrPDB Length = 247 Score = 45.9 bits (107), Expect = 1e-05, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 58/155 (37%), Gaps = 29/155 (18%) Query: 2 KVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQ-KLKIQVVDLQQIALPLYEDDDELI 60 ++ I+ GS+R +Y + E + L++ +++V D + LP + Sbjct: 36 RILILYGSLRTV-------SYSRLLAEEARRLLEFFGAEVKVFDPSGLPLP------DAA 82 Query: 61 PAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLY------HEW 114 P V E + S + V+V+P+ + +K ID + Sbjct: 83 PVSHPKVQELRELSIWS--------EGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPT 134 Query: 115 HGKPALVVS-YGGHGGSKCNDQLQEVLHGLKMNVI 148 GK V+ GG +Q++ + ++M I Sbjct: 135 QGKTLAVMQVSGGSQSFNAVNQMRILGRWMRMITI 169 >4C0X-A nrPDB Length = 203 Score = 36.7 bits (83), Expect = 0.007, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 6/109 (5%) Query: 24 KRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYAD----SKTRSWS 79 R + + + D +++ DL A+ + + + V + A + Sbjct: 21 SREVVEAWKAADPSVEVVYRDLAADAIAHFSAATLVAAGTPEDVRDAAQAFEAKLSAETL 80 Query: 80 RIVNALDIIVFVTPQYNWGYPAALKNAIDRLYHEWHGKPALVVSYGGHG 128 A D +V P YN+ P LK IDR+ GK G G Sbjct: 81 EEFLAADAVVIGAPMYNFTVPTQLKAWIDRVA--VAGKTFRYTEAGPQG 127 >4ESE-A nrPDB Length = 204 Score = 36.3 bits (82), Expect = 0.008, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 4/80 (5%) Query: 37 KLKIQVVDLQQIALPLYEDDDELI--PA--QIKSVDEYADSKTRSWSRIVNALDIIVFVT 92 +I V DL +P+ + + P+ + + A + + + A D+IV Sbjct: 38 GDQITVRDLAAQPIPVLDGELVGALRPSGTALTPRQQEALALSDELIAELQANDVIVIAA 97 Query: 93 PQYNWGYPAALKNAIDRLYH 112 P YN+ P LKN D + Sbjct: 98 PMYNFNIPTQLKNYFDMIAR 117 >3B6J-A nrPDB Length = 198 Score = 35.9 bits (81), Expect = 0.011, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 6/82 (7%) Query: 58 ELIPAQI-KSVDEYADSKTRSWSRIVNALDIIVFVTPQYNWGYPAALKNAID-----RLY 111 E +P Q+ + + + + + D I+F TP ++ +D Sbjct: 41 ETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWAS 100 Query: 112 HEWHGKPALVVSYGGHGGSKCN 133 +GK A V S G GG + Sbjct: 101 GALYGKLASVFSSTGTGGGQEQ 122 >3W78-A nrPDB Length = 211 Score = 35.5 bits (80), Expect = 0.012, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 11/83 (13%) Query: 36 QKLKIQVVDLQQIALPLYEDDD----------ELIPAQIKSVDEYADSKTRSWSRIVNAL 85 + ++ +DL +P + D E A + V + + + Sbjct: 35 PQDEVVTIDLFNTTVPAIDADVFAAWGKFAAGEGFEA-LTEVQQQKVAAMNTNLETFMNA 93 Query: 86 DIIVFVTPQYNWGYPAALKNAID 108 D VFVTP +N+ YP +K +D Sbjct: 94 DRYVFVTPMWNFSYPPVVKAYLD 116 >1T5B-A nrPDB Length = 201 Score = 35.5 bits (80), Expect = 0.015, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 4/78 (5%) Query: 39 KIQVVDLQQIALPLYEDDDELI----PAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQ 94 +I V DL +P+ + + A + + A + + + A D+IV P Sbjct: 37 EITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELIAELKAHDVIVIAAPM 96 Query: 95 YNWGYPAALKNAIDRLYH 112 YN+ P LKN D + Sbjct: 97 YNFNIPTQLKNYFDLIAR 114 >2Z98-A nrPDB Length = 200 Score = 34.8 bits (78), Expect = 0.022, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 4/78 (5%) Query: 39 KIQVVDLQQIALPLYEDDDELI----PAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQ 94 +I V DL +P+ + + A + + A + + + A D+IV P Sbjct: 36 EITVRDLAANPIPVLDGELVGALRPSDAPLTPRQQEALALSDELIAELKAHDVIVIAAPM 95 Query: 95 YNWGYPAALKNAIDRLYH 112 YN+ LKN D + Sbjct: 96 YNFNISTQLKNYFDLVAR 113 >4LA4-A nrPDB Length = 207 Score = 32.8 bits (73), Expect = 0.094, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 13/124 (10%) Query: 43 VDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQYNWGYPAA 102 V++ + +P ++ + + IK S + ++ D I+F TP + Sbjct: 33 VEVTLLQVPELMPEEVQVKSGIKGYRAAFGSIPYATPEVLAEADAIIFGTPTRFGNMCSQ 92 Query: 103 LKNAID-----RLYHEWHGK--PALVVSYGGHGGSK---CNDQLQEVLHGLKMNVIGGVA 152 ++N +D + GK + HGG + + + HG+ VI GV Sbjct: 93 MRNFLDQTGGLWMSGGLIGKVGSVFTSTASQHGGQETTITSFHTTLLHHGM---VIVGVP 149 Query: 153 VKIP 156 P Sbjct: 150 YSEP 153 >4F8Y-A nrPDB Length = 196 Score = 32.4 bits (72), Expect = 0.13, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 42/96 (43%), Gaps = 6/96 (6%) Query: 17 PEIAAYVKRTIENSEELIDQKLKIQVVDL-QQIALPLYEDDDELIPAQIKSVDEYADSKT 75 P ++ ++ + + ++ + +DL + P+ + ++ + V E Sbjct: 10 PNPTSFNAEILKQVQTNLSKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEK--- 66 Query: 76 RSWSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLY 111 + +V D ++F+ P + G PA LK IDR++ Sbjct: 67 --YRDLVTWADHLIFIFPIWWSGMPAILKGFIDRVF 100 >4N9Q-A nrPDB Length = 212 Score = 32.1 bits (71), Expect = 0.15, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 5/78 (6%) Query: 36 QKLKIQVVDLQQIALPL----YEDDDELIPAQIKSVDEYAD-SKTRSWSRIVNALDIIVF 90 + ++ ++ ++ LP + + +S+ AD + + + D++V Sbjct: 34 PQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVI 93 Query: 91 VTPQYNWGYPAALKNAID 108 TP YN+ P+ LK ID Sbjct: 94 STPMYNFSVPSGLKAWID 111 >1QRD-A nrPDB Length = 273 Score = 31.7 bits (70), Expect = 0.23, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 18/109 (16%) Query: 56 DDELIPAQIKSVDEYADSKTR----SWSRIVNALDIIVFVTPQYNWGYPAALKNAIDR-L 110 D E ++S Y + + + + + A D+++F P Y +G PA LK +R L Sbjct: 61 DSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVL 120 Query: 111 YHEWHGKPALVVSYGGH-----------GGSKCNDQLQEVLHGLKMNVI 148 + A + G GGS LQ V HG MNVI Sbjct: 121 VAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGV-HG-DMNVI 167 >5LBT-A nrPDB Length = 237 Score = 31.3 bits (69), Expect = 0.28, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 13/93 (13%) Query: 31 EELIDQKLKIQVVDLQQIAL-PLYEDDD--------ELIPAQIKSVDEYADSKTRS---- 77 +EL Q + V DL + L P D D E+ +++ + Y S Sbjct: 28 DELSRQGCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITD 87 Query: 78 WSRIVNALDIIVFVTPQYNWGYPAALKNAIDRL 110 + V D+++F P Y + PA LK +DR+ Sbjct: 88 EQKKVREADLVIFQFPLYWFSVPAILKGWMDRV 120 >3FAY-A nrPDB Length = 387 Score = 31.3 bits (69), Expect = 0.29, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 23/108 (21%) Query: 103 LKNAIDRLYHEWHGKPA---LVVSYGGHGGSKCNDQLQEVLHGLKMNVIGGVAVKIPVGT 159 +K+ +D++ G P +VVS+ G++ + L+++L + ++ ++ I Sbjct: 76 IKSKVDQIQEIVTGNPTVIKMVVSFNR--GARGQNALRQILAPVVKEIMDDKSLNIKTDP 133 Query: 160 I------------------PLPEDIVPQLSVHNEEILQLLASCIETTR 189 + LP D+ P+ ++ +EE+ L S I R Sbjct: 134 VDIYKSWVNQMESQTGEASKLPYDVTPEQALAHEEVKTRLDSSIRNMR 181 >2ZKI-A nrPDB Length = 199 Score = 30.5 bits (67), Expect = 0.41, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 11/82 (13%) Query: 58 ELIPAQIKS---VDEYADSKTRSWSRIVNALDIIVFVTPQYNWGYPAALKNAID-----R 109 E +P + +S D+ D + D +P LK +D Sbjct: 42 ETLPPEFQSRIPFDKVKD-IPEVTLDDMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILW 100 Query: 110 LYHEWHGKPA--LVVSYGGHGG 129 + +GKP + HGG Sbjct: 101 KDNVLYGKPVTFFTEASTVHGG 122 >2DU7-A nrPDB Length = 549 Score = 29.4 bits (64), Expect = 0.92, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 5/44 (11%) Query: 52 LYEDDDELIPAQIKSVDEY-----ADSKTRSWSRIVNALDIIVF 90 +Y+ + IP + V E +K S + +D I++ Sbjct: 442 VYDGNIYGIPPTFEGVKEQYIPILKKAKEEGVSTNIRYIDGIIY 485 >3FRY-A nrPDB Length = 73 Score = 28.2 bits (61), Expect = 2.1, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 6/68 (8%) Query: 12 AKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYA 71 + C A VK+ +E + K++ VDL + + ++D + +++ A Sbjct: 12 SGLSCHHCVARVKKALEEA------GAKVEKVDLNEAVVAGNKEDVDKYIKAVEAAGYQA 65 Query: 72 DSKTRSWS 79 ++ +WS Sbjct: 66 KLRSSAWS 73 >6GKR-A nrPDB Length = 316 Score = 28.2 bits (61), Expect = 2.2, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 23/39 (58%) Query: 56 DDELIPAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQ 94 ++ ++P +IK++ Y +S+ S +N D +F+ P+ Sbjct: 151 NERVLPPRIKALANYRNSQLASSEAAMNGYDTALFLNPE 189 >5W21-A nrPDB Length = 981 Score = 28.2 bits (61), Expect = 2.4, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 20/126 (15%) Query: 46 QQIALPLYEDDDELI------------PAQIKSVDEYADSKTRSWSRIVNAL-DIIVFVT 92 LP + +D++ + I E D + V + DI + Sbjct: 782 NNFLLPYFTEDEKKLIQGTFDFLALSHYTTILVDSEKEDPIKYNDYLEVQEMTDITWLNS 841 Query: 93 PQYNWGYPAALKNAIDRLYHEWHGKPALVVSYGGHGGSKCN-DQLQE------VLHGLKM 145 P P L+ ++ L ++ P ++S G G DQL+ + LK Sbjct: 842 PSQVAVVPWGLRKVLNWLKFKYGDLPMYIISNGIDDGLHAEDDQLRVYYMQNYINEALKA 901 Query: 146 NVIGGV 151 +++ G+ Sbjct: 902 HILDGI 907 >5LO9-A nrPDB Length = 526 Score = 28.2 bits (61), Expect = 2.5, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 10/86 (11%) Query: 48 IALPLYEDDDELIPAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQYNWGYPAALKNAI 107 +A P Y ++ VD A+ + +NA D + P+ N AL++ I Sbjct: 308 VAYPAYRGKNQ-------RVDTMAERIQGCFRYSMNAQDSVSGQVPETNGLVLDALQSYI 360 Query: 108 DRLYHEWHGKPALVVSYGGHGGSKCN 133 L G P + G G + Sbjct: 361 FWLA---TGAPTGDTAMSGRGYPRLQ 383 >5A4K-A nrPDB Length = 294 Score = 27.8 bits (60), Expect = 2.7, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 14/84 (16%) Query: 77 SWSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLY-HEWHGKPALVVSYGGH-------- 127 + + + A D+++F P +G PA LK +R++ E+ A + G Sbjct: 107 AEQKKLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFWSKKAVLS 166 Query: 128 ---GGSKCNDQLQEVLHGLKMNVI 148 GGS LQ + HG MNVI Sbjct: 167 ITTGGSGSMYSLQGI-HG-DMNVI 188 >4KQQ-A nrPDB Length = 564 Score = 27.4 bits (59), Expect = 4.1, Method: Composition-based stats. Identities = 8/66 (12%), Positives = 24/66 (36%) Query: 66 SVDEYADSKTRSWSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYHEWHGKPALVVSYG 125 ++ S S +R+ D + ++P+ L+ ++ + + + G Sbjct: 409 ALANDGKSVPLSMTRVDRVPDGVQVISPEVASTVQGMLQQVVEAQGGVFRAQVPGYHAAG 468 Query: 126 GHGGSK 131 G ++ Sbjct: 469 KSGTAR 474 >4POC-A nrPDB Length = 254 Score = 27.0 bits (58), Expect = 5.4, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 1/49 (2%) Query: 105 NAIDRLYHEWHGKPALVVSYGGHGGSKCNDQLQEVLHG-LKMNVIGGVA 152 N D +P + G + ++ E L G LK NV VA Sbjct: 159 NVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVA 207 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.312 0.125 0.321 Lambda K H 0.267 0.0384 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,736,023 Number of Sequences: 36641 Number of extensions: 256009 Number of successful extensions: 872 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 26 Number of HSP's that attempted gapping in prelim test: 826 Number of HSP's gapped (non-prelim): 61 length of query: 191 length of database: 10,336,785 effective HSP length: 92 effective length of query: 99 effective length of database: 6,965,813 effective search space: 689615487 effective search space used: 689615487 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 56 (26.3 bits)