BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q07896
         (663 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

6EM5-I nrPDB                                                         1357   0.0  
5WLC-SU nrPDB                                                          36   0.053
5IKJ-A nrPDB                                                           30   3.8  
2KR6-A nrPDB                                                           29   6.4  

>6EM5-I nrPDB
          Length = 663

 Score = 1357 bits (3513), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 663/663 (100%), Positives = 663/663 (100%)

Query: 1   MAKRNRSQFRIQERTAKKRKHEDSLLEGNVFQNAPEDMDENTIYSAKGSSWDEEEQDYEM 60
           MAKRNRSQFRIQERTAKKRKHEDSLLEGNVFQNAPEDMDENTIYSAKGSSWDEEEQDYEM
Sbjct: 1   MAKRNRSQFRIQERTAKKRKHEDSLLEGNVFQNAPEDMDENTIYSAKGSSWDEEEQDYEM 60

Query: 61  VPRKNRSDTSNLVEGLPIKVNGKVERKLHKAQEKPKDDDEEDEDSNDSSEDDEGPNEEQE 120
           VPRKNRSDTSNLVEGLPIKVNGKVERKLHKAQEKPKDDDEEDEDSNDSSEDDEGPNEEQE
Sbjct: 61  VPRKNRSDTSNLVEGLPIKVNGKVERKLHKAQEKPKDDDEEDEDSNDSSEDDEGPNEEQE 120

Query: 121 AEAKEDEPDTEEKILQLKEDIADLVTKVMEEPEENTAALGRLCKMVESKNPNTCKFSMLA 180
           AEAKEDEPDTEEKILQLKEDIADLVTKVMEEPEENTAALGRLCKMVESKNPNTCKFSMLA
Sbjct: 121 AEAKEDEPDTEEKILQLKEDIADLVTKVMEEPEENTAALGRLCKMVESKNPNTCKFSMLA 180

Query: 181 LVPVFKSIIPGYRIRPLTETEKKEKVSKEVSKLRNFEQALVYNYKNYVGRLQSLSKTPSN 240
           LVPVFKSIIPGYRIRPLTETEKKEKVSKEVSKLRNFEQALVYNYKNYVGRLQSLSKTPSN
Sbjct: 181 LVPVFKSIIPGYRIRPLTETEKKEKVSKEVSKLRNFEQALVYNYKNYVGRLQSLSKTPSN 240

Query: 241 AAPIQVSLGILATQAAKELISTASHFNFRTDIFTLLLRRICKPRISTDPTSIQIIQTFET 300
           AAPIQVSLGILATQAAKELISTASHFNFRTDIFTLLLRRICKPRISTDPTSIQIIQTFET
Sbjct: 241 AAPIQVSLGILATQAAKELISTASHFNFRTDIFTLLLRRICKPRISTDPTSIQIIQTFET 300

Query: 301 LLNEDEEGSISFEILRIFNKILKTRNFNIEESVLNMLLSLDVLHDYDPNTKLKGNVSAPK 360
           LLNEDEEGSISFEILRIFNKILKTRNFNIEESVLNMLLSLDVLHDYDPNTKLKGNVSAPK
Sbjct: 301 LLNEDEEGSISFEILRIFNKILKTRNFNIEESVLNMLLSLDVLHDYDPNTKLKGNVSAPK 360

Query: 361 LKKKDRVHLSKKQRKARKEMQQIEEEMRNAEQAVSAEERERNQSEILKIVFTIYLNILKN 420
           LKKKDRVHLSKKQRKARKEMQQIEEEMRNAEQAVSAEERERNQSEILKIVFTIYLNILKN
Sbjct: 361 LKKKDRVHLSKKQRKARKEMQQIEEEMRNAEQAVSAEERERNQSEILKIVFTIYLNILKN 420

Query: 421 NAKTLIGSVLEGLTKFGNMANFDLLGDFLEVMKELISDTEFDNLSSAEVRKALLCIVSAF 480
           NAKTLIGSVLEGLTKFGNMANFDLLGDFLEVMKELISDTEFDNLSSAEVRKALLCIVSAF
Sbjct: 421 NAKTLIGSVLEGLTKFGNMANFDLLGDFLEVMKELISDTEFDNLSSAEVRKALLCIVSAF 480

Query: 481 SLISNTQYMKVNVDLSKFVDGLYALLPYICLDADIELSYRSLRLADPLNNEIIKPSVNVS 540
           SLISNTQYMKVNVDLSKFVDGLYALLPYICLDADIELSYRSLRLADPLNNEIIKPSVNVS
Sbjct: 481 SLISNTQYMKVNVDLSKFVDGLYALLPYICLDADIELSYRSLRLADPLNNEIIKPSVNVS 540

Query: 541 TKAELLLKALDHVFFRSKSGTKERATAFTKRLYMCISHTPEKTSIAILKFIDKLMNRYPE 600
           TKAELLLKALDHVFFRSKSGTKERATAFTKRLYMCISHTPEKTSIAILKFIDKLMNRYPE
Sbjct: 541 TKAELLLKALDHVFFRSKSGTKERATAFTKRLYMCISHTPEKTSIAILKFIDKLMNRYPE 600

Query: 601 ISGLYSSEDRIGNGHFIMEADNPSRSNPEAATLWDNALLEKHYCPVVTKGLRSLSSRSKE 660
           ISGLYSSEDRIGNGHFIMEADNPSRSNPEAATLWDNALLEKHYCPVVTKGLRSLSSRSKE
Sbjct: 601 ISGLYSSEDRIGNGHFIMEADNPSRSNPEAATLWDNALLEKHYCPVVTKGLRSLSSRSKE 660

Query: 661 CSK 663
           CSK
Sbjct: 661 CSK 663


>5WLC-SU nrPDB
          Length = 552

 Score = 36.2 bits (82), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 22/152 (14%)

Query: 531 EIIKPSV-NVSTKAELLLKALDHVFFRSKSGTKERATAFTKRLYMCISHTPEKTSIAILK 589
           +II P + +V  +A    + +D VF  S   +     +F K+L      +P    + ++ 
Sbjct: 343 QIINPDLMHVKYRARFF-RLMD-VFLSSTHLSAHLVASFIKKLARLTLESPPSAIVTVIP 400

Query: 590 FIDKLMNRYPE----------ISGLYSSEDRIGN---------GHFIMEADNPSRSNPEA 630
           FI  L+ ++P           IS  + + D++ N           F +   +P  ++   
Sbjct: 401 FIYNLIRKHPNCMIMLHNPAFISNPFQTPDQVANLKTLKENYVDPFDVHESDPELTHALD 460

Query: 631 ATLWDNALLEKHYCPVVTKGLRSLSSRSKECS 662
           ++LW+ A L +HY P V    +  +   K+ S
Sbjct: 461 SSLWELASLMEHYHPNVATLAKIFAQPFKKLS 492


>5IKJ-A nrPDB
          Length = 548

 Score = 30.0 bits (66), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 10/78 (12%)

Query: 159 LGRLCKMVESKNPNTCKFSMLALVPVFKSIIPGYRIRPLTET-----EKKEKVSKEVSKL 213
           L +LCK + + NPN    S +   P  K+++    +RP  ++     EK+ K S ++   
Sbjct: 78  LNQLCKRLSTGNPNNTNASTVVTAPE-KNVVSARHVRPNPKSSKDTLEKQPKYSSQIYLT 136

Query: 214 RNFEQ----ALVYNYKNY 227
            +FE     +L  NY+ Y
Sbjct: 137 DSFENYYLASLPTNYQLY 154


>2KR6-A nrPDB
          Length = 176

 Score = 29.3 bits (64), Expect = 6.4,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 71  NLVEGLPIKVNGKVERKLHKAQEKPKDDDEEDEDSNDSSEDDEGPNEEQEAEAKEDEPDT 130
           N+ EG P     + +R++ K  +   +  E +     +  DD G +EE EA+ ++     
Sbjct: 6   NMAEGDP-----EAQRRVSKNSKYNAESTERESQDTVAENDDGGFSEEWEAQ-RDSHLGP 59

Query: 131 EEKILQLKEDIADLVTKVM--EEPEENTAALG 160
                + +  + +L + ++  E+PEE    LG
Sbjct: 60  HRSTPESRAAVQELSSSILAGEDPEERGVKLG 91


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

6EM5-I nrPDB                                                         1352   0.0  

Sequences not found previously or not previously below threshold:

5WLC-SU nrPDB                                                          38   0.018
5IKJ-A nrPDB                                                           34   0.25 
6GMH-U nrPDB                                                           32   0.60 
2E87-A nrPDB                                                           32   0.78 
2KMW-A nrPDB                                                           31   1.3  
6MAT-A nrPDB                                                           31   1.6  
5FN4-B nrPDB                                                           31   1.7  
2KR6-A nrPDB                                                           31   1.7  
6FGZ-A nrPDB                                                           30   3.4  
6CV9-A nrPDB                                                           30   3.4  
6FAI-l nrPDB                                                           30   3.7  
4TYM-A nrPDB                                                           30   4.0  
4F9B-A nrPDB                                                           30   4.2  
1F9T-A nrPDB                                                           30   4.4  
4UQI-A nrPDB                                                           30   4.5  
4ETP-A nrPDB                                                           30   4.8  
5A5T-C nrPDB                                                           29   5.0  
3J3R-1 nrPDB                                                           29   5.1  


CONVERGED!
>6EM5-I nrPDB
          Length = 663

 Score = 1352 bits (3499), Expect = 0.0,   Method: Composition-based stats.
 Identities = 663/663 (100%), Positives = 663/663 (100%)

Query: 1   MAKRNRSQFRIQERTAKKRKHEDSLLEGNVFQNAPEDMDENTIYSAKGSSWDEEEQDYEM 60
           MAKRNRSQFRIQERTAKKRKHEDSLLEGNVFQNAPEDMDENTIYSAKGSSWDEEEQDYEM
Sbjct: 1   MAKRNRSQFRIQERTAKKRKHEDSLLEGNVFQNAPEDMDENTIYSAKGSSWDEEEQDYEM 60

Query: 61  VPRKNRSDTSNLVEGLPIKVNGKVERKLHKAQEKPKDDDEEDEDSNDSSEDDEGPNEEQE 120
           VPRKNRSDTSNLVEGLPIKVNGKVERKLHKAQEKPKDDDEEDEDSNDSSEDDEGPNEEQE
Sbjct: 61  VPRKNRSDTSNLVEGLPIKVNGKVERKLHKAQEKPKDDDEEDEDSNDSSEDDEGPNEEQE 120

Query: 121 AEAKEDEPDTEEKILQLKEDIADLVTKVMEEPEENTAALGRLCKMVESKNPNTCKFSMLA 180
           AEAKEDEPDTEEKILQLKEDIADLVTKVMEEPEENTAALGRLCKMVESKNPNTCKFSMLA
Sbjct: 121 AEAKEDEPDTEEKILQLKEDIADLVTKVMEEPEENTAALGRLCKMVESKNPNTCKFSMLA 180

Query: 181 LVPVFKSIIPGYRIRPLTETEKKEKVSKEVSKLRNFEQALVYNYKNYVGRLQSLSKTPSN 240
           LVPVFKSIIPGYRIRPLTETEKKEKVSKEVSKLRNFEQALVYNYKNYVGRLQSLSKTPSN
Sbjct: 181 LVPVFKSIIPGYRIRPLTETEKKEKVSKEVSKLRNFEQALVYNYKNYVGRLQSLSKTPSN 240

Query: 241 AAPIQVSLGILATQAAKELISTASHFNFRTDIFTLLLRRICKPRISTDPTSIQIIQTFET 300
           AAPIQVSLGILATQAAKELISTASHFNFRTDIFTLLLRRICKPRISTDPTSIQIIQTFET
Sbjct: 241 AAPIQVSLGILATQAAKELISTASHFNFRTDIFTLLLRRICKPRISTDPTSIQIIQTFET 300

Query: 301 LLNEDEEGSISFEILRIFNKILKTRNFNIEESVLNMLLSLDVLHDYDPNTKLKGNVSAPK 360
           LLNEDEEGSISFEILRIFNKILKTRNFNIEESVLNMLLSLDVLHDYDPNTKLKGNVSAPK
Sbjct: 301 LLNEDEEGSISFEILRIFNKILKTRNFNIEESVLNMLLSLDVLHDYDPNTKLKGNVSAPK 360

Query: 361 LKKKDRVHLSKKQRKARKEMQQIEEEMRNAEQAVSAEERERNQSEILKIVFTIYLNILKN 420
           LKKKDRVHLSKKQRKARKEMQQIEEEMRNAEQAVSAEERERNQSEILKIVFTIYLNILKN
Sbjct: 361 LKKKDRVHLSKKQRKARKEMQQIEEEMRNAEQAVSAEERERNQSEILKIVFTIYLNILKN 420

Query: 421 NAKTLIGSVLEGLTKFGNMANFDLLGDFLEVMKELISDTEFDNLSSAEVRKALLCIVSAF 480
           NAKTLIGSVLEGLTKFGNMANFDLLGDFLEVMKELISDTEFDNLSSAEVRKALLCIVSAF
Sbjct: 421 NAKTLIGSVLEGLTKFGNMANFDLLGDFLEVMKELISDTEFDNLSSAEVRKALLCIVSAF 480

Query: 481 SLISNTQYMKVNVDLSKFVDGLYALLPYICLDADIELSYRSLRLADPLNNEIIKPSVNVS 540
           SLISNTQYMKVNVDLSKFVDGLYALLPYICLDADIELSYRSLRLADPLNNEIIKPSVNVS
Sbjct: 481 SLISNTQYMKVNVDLSKFVDGLYALLPYICLDADIELSYRSLRLADPLNNEIIKPSVNVS 540

Query: 541 TKAELLLKALDHVFFRSKSGTKERATAFTKRLYMCISHTPEKTSIAILKFIDKLMNRYPE 600
           TKAELLLKALDHVFFRSKSGTKERATAFTKRLYMCISHTPEKTSIAILKFIDKLMNRYPE
Sbjct: 541 TKAELLLKALDHVFFRSKSGTKERATAFTKRLYMCISHTPEKTSIAILKFIDKLMNRYPE 600

Query: 601 ISGLYSSEDRIGNGHFIMEADNPSRSNPEAATLWDNALLEKHYCPVVTKGLRSLSSRSKE 660
           ISGLYSSEDRIGNGHFIMEADNPSRSNPEAATLWDNALLEKHYCPVVTKGLRSLSSRSKE
Sbjct: 601 ISGLYSSEDRIGNGHFIMEADNPSRSNPEAATLWDNALLEKHYCPVVTKGLRSLSSRSKE 660

Query: 661 CSK 663
           CSK
Sbjct: 661 CSK 663


>5WLC-SU nrPDB
          Length = 552

 Score = 37.8 bits (86), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 22/137 (16%)

Query: 531 EIIKPSV-NVSTKAELLLKALDHVFFRSKSGTKERATAFTKRLYMCISHTPEKTSIAILK 589
           +II P + +V  +A    + +D VF  S   +     +F K+L      +P    + ++ 
Sbjct: 343 QIINPDLMHVKYRARFF-RLMD-VFLSSTHLSAHLVASFIKKLARLTLESPPSAIVTVIP 400

Query: 590 FIDKLMNRYPE----------ISGLYSSEDRIGN---------GHFIMEADNPSRSNPEA 630
           FI  L+ ++P           IS  + + D++ N           F +   +P  ++   
Sbjct: 401 FIYNLIRKHPNCMIMLHNPAFISNPFQTPDQVANLKTLKENYVDPFDVHESDPELTHALD 460

Query: 631 ATLWDNALLEKHYCPVV 647
           ++LW+ A L +HY P V
Sbjct: 461 SSLWELASLMEHYHPNV 477


>5IKJ-A nrPDB
          Length = 548

 Score = 33.9 bits (76), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 10/78 (12%)

Query: 159 LGRLCKMVESKNPNTCKFSMLALVPVFKSIIPGYRIRPLTET-----EKKEKVSKEVSKL 213
           L +LCK + + NPN    S +   P  K+++    +RP  ++     EK+ K S ++   
Sbjct: 78  LNQLCKRLSTGNPNNTNASTVVTAPE-KNVVSARHVRPNPKSSKDTLEKQPKYSSQIYLT 136

Query: 214 RNFEQ----ALVYNYKNY 227
            +FE     +L  NY+ Y
Sbjct: 137 DSFENYYLASLPTNYQLY 154


>6GMH-U nrPDB
          Length = 776

 Score = 32.4 bits (72), Expect = 0.60,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 16/118 (13%)

Query: 31  FQNAPEDMD-ENTIYSAKGSSWDEEEQDYEMVPRKNRSDTSNLVEGLPIKVNGKVERKLH 89
            QN+ +D   +NT    +    D+E Q      + N  D        P+  +   E++  
Sbjct: 286 LQNSDDDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDER------PVASDNDDEKQNS 339

Query: 90  KAQEKPKDDDEE------DEDSNDSSEDDEGPNEEQEAEAKEDE---PDTEEKILQLK 138
             +E+P+  DEE      DE    S E+    ++E+E + K +     D+E+++L++K
Sbjct: 340 DDEEQPQLSDEEKMQNSDDERPQASDEEHRHSDDEEEQDHKSESARGSDSEDEVLRMK 397



 Score = 32.4 bits (72), Expect = 0.70,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 3/111 (2%)

Query: 22  EDSLLEGNVFQNAPEDMDENTIYSAKGSSW-DEEEQDYEMVPRKNRSDTSNLVEGLPIKV 80
           +DS  EG    +  ++  E +   ++ S   D E+ D   V + + S+  N  E    + 
Sbjct: 174 DDSEDEGASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEGHRS 233

Query: 81  NGKVERKLHKAQEKPKDDDEE--DEDSNDSSEDDEGPNEEQEAEAKEDEPD 129
           +G       +  EK   DDE+   ED +D S+D++  N + E  A+  + D
Sbjct: 234 DGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDED 284



 Score = 28.9 bits (63), Expect = 7.0,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 13/129 (10%)

Query: 12  QERTAKKRKHED---SLLEGNVFQNAPEDMDENTIYSAKGSSWDEEE------QDYEMVP 62
           +   +++  HED   S ++ +    AP D ++    S  GS   E E       D E   
Sbjct: 197 RSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEGHRSDGGSHHSEAEGSEKAHSDDEKWG 256

Query: 63  RKNRSDTSN----LVEGLPIKVNGKVERKLHKAQEKPKDDDEEDEDSNDSSEDDEGPNEE 118
           R+++SD S+           +  G  E KL  + +  K  + +DE+    S+D+     E
Sbjct: 257 REDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSDDDEKMQNTDDEERPQLSDDERQQLSE 316

Query: 119 QEAEAKEDE 127
           +E    +DE
Sbjct: 317 EEKANSDDE 325


>2E87-A nrPDB
          Length = 357

 Score = 32.0 bits (71), Expect = 0.78,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 8/76 (10%)

Query: 144 LVTKVMEEPEENTAALGRLCKMVESKNPNTCKFSML---ALVPVFKSIIPGYRIRPLTET 200
           ++ K+    EEN   + RL K V+ K  N  K S L    +  V + II    +RPL E 
Sbjct: 286 VINKIDVADEEN---IKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIK--TLRPLAEK 340

Query: 201 EKKEKVSKEVSKLRNF 216
             +EK+ +E+ + R++
Sbjct: 341 VAREKIERELRRYRSY 356


>2KMW-A nrPDB
          Length = 150

 Score = 31.2 bits (69), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 14/60 (23%)

Query: 87  KLHKAQEKP----KDD-----DEEDEDSNDSSEDDEGPNEEQEAEAKEDE-----PDTEE 132
           +L K++EKP    K D     DE++E +++++ DDE     Q++E+ +D+     PD E+
Sbjct: 87  RLLKSEEKPAPYIKVDWNKWCDEDEEVNSETASDDESAFVNQDSESSDDDGLLYLPDLEK 146


>6MAT-A nrPDB
          Length = 813

 Score = 31.2 bits (69), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 317 IFNKILKTRNFNIEESVLNMLLSLDVLHDYDPNTKLKGNVSAPKLKKKDRVHLSKKQRKA 376
           ++N +L       +E+     L++D ++D    T  + N S  + KK+      ++    
Sbjct: 15  VYNIVLNLEQQGTDENGKRPRLTVDYVYD----TIKRSNSSLARQKKRMLEDSIERVLAV 70

Query: 377 RKEMQQIEEEMRNAEQAVSAEERERNQSE 405
           RKE  + EEE  +++  + A+ERER + +
Sbjct: 71  RKEQAKAEEET-DSDDLIEAQERERERQK 98


>5FN4-B nrPDB
          Length = 467

 Score = 31.2 bits (69), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 71  NLVEGLPIKVNGKVERKLHKAQEKPKDDDEEDEDSNDSSEDDEGPNEEQEAEAKEDEPDT 130
           N+ EG P     + +R++ K  +   +  E +     +  DD G +EE EA+ ++     
Sbjct: 297 NMAEGDP-----EAQRRVSKNSKYNAESTERESQDTVAENDDGGFSEEWEAQ-RDSHLGP 350

Query: 131 EEKILQLKEDIADLVTKVM--EEPEENTAALG 160
                + +  + +L + ++  E+PEE    LG
Sbjct: 351 HRSTPESRAAVQELSSSILAGEDPEERGVKLG 382


>2KR6-A nrPDB
          Length = 176

 Score = 31.2 bits (69), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 71  NLVEGLPIKVNGKVERKLHKAQEKPKDDDEEDEDSNDSSEDDEGPNEEQEAEAKEDEPDT 130
           N+ EG P     + +R++ K  +   +  E +     +  DD G +EE EA+ ++     
Sbjct: 6   NMAEGDP-----EAQRRVSKNSKYNAESTERESQDTVAENDDGGFSEEWEAQ-RDSHLGP 59

Query: 131 EEKILQLKEDIADLVTKVM--EEPEENTAALG 160
                + +  + +L + ++  E+PEE    LG
Sbjct: 60  HRSTPESRAAVQELSSSILAGEDPEERGVKLG 91


>6FGZ-A nrPDB
          Length = 774

 Score = 30.1 bits (66), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 10/93 (10%)

Query: 29  NVFQNAPED--MDENTIYSAKGSSWDEEEQDYEMVPRKNRSDTSNLVEGLPIKVNGKVER 86
           N   +AP++   ++N I   +  + DE  +  +   RK+  D S      P K +     
Sbjct: 561 NAANSAPKESNANDNRILQPRRRNQDENAKKNDDARRKD--DKS------PNKTDASNAE 612

Query: 87  KLHKAQEKPKDDDEEDEDSNDSSEDDEGPNEEQ 119
           K  ++   P+ D   D   N++ ED+E  NE +
Sbjct: 613 KDARSDRNPRGDPTMDNFFNEADEDEEDGNERR 645



 Score = 29.3 bits (64), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 64  KNRSDTSNLVEGLPIKVNGKVERKLHKAQEKPKDDDEEDEDSNDS-SEDDEGPNEEQEAE 122
           K  + T N     P + N    R L   Q + ++ DE  + ++D+  +DD+ PN+   + 
Sbjct: 554 KAANSTDNAANSAPKESNANDNRIL---QPRRRNQDENAKKNDDARRKDDKSPNKTDASN 610

Query: 123 AKED 126
           A++D
Sbjct: 611 AEKD 614


>6CV9-A nrPDB
          Length = 842

 Score = 30.1 bits (66), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 25/41 (60%)

Query: 124 KEDEPDTEEKILQLKEDIADLVTKVMEEPEENTAALGRLCK 164
           KE +   E ++ ++K+DI+ L  +++EE  +NT  L  L +
Sbjct: 785 KESDEVNEGELKEIKQDISSLRYELLEEKSQNTEDLAELIR 825


>6FAI-l nrPDB
          Length = 425

 Score = 30.1 bits (66), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 97  DDDEEDEDSNDSSEDDEGPNEEQEAEAKEDEPDTEEKILQLKEDIADLVTKVME 150
           D+ EE+    D SE+DE  + E + E+ ED  D+E+   +  E I + ++  +E
Sbjct: 361 DEAEEENGEGDYSEEDEYYDSELDNESSED--DSEDAQEEENERIIEALSSGVE 412


>4TYM-A nrPDB
          Length = 258

 Score = 29.7 bits (65), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 337 LLSLDVLHDYDPNTKL---KGNVSAPKLKKKDRVHLSKKQRKARKEMQQIEEEMRNAEQA 393
           +LS DV +   P+  +   K  V A +++     +L+ +       M  I + + N E+ 
Sbjct: 175 VLSSDVFYSNQPDRNMALGKLGVHAIEMEAAALYYLAAQHNVNALAMMTISDNLNNPEED 234

Query: 394 VSAEERERNQSEILKI 409
            SAEER+   ++++K+
Sbjct: 235 TSAEERQTTFTDMMKV 250


>4F9B-A nrPDB
          Length = 361

 Score = 29.7 bits (65), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 586 AILKFIDKLMNRYPEISGLYSSEDRIGNGHF 616
            + K I+KL    P++S ++  ED+IG G F
Sbjct: 4   GVKKDIEKLYEAVPQLSNVFKIEDKIGEGTF 34


>1F9T-A nrPDB
          Length = 358

 Score = 29.7 bits (65), Expect = 4.4,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 87/193 (45%), Gaps = 34/193 (17%)

Query: 289 PTSI-QIIQTFETLLNEDEEGSISFEILRIFNK----ILKTRNFNIEESVLNMLLSLDVL 343
           P++I  I      L  +  +  ++ E + I+N+    +L++ N N E++ +   L  ++ 
Sbjct: 122 PSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIG--LKHEIR 179

Query: 344 HDYDPNTKLKGNVSAPKLKKKDRVHLSKKQRKARKEMQQIEEEMRNAEQAVSAEERERNQ 403
           HD +  T    NV++ KL+ ++ V +  K  KA K        +R+     S E   R+ 
Sbjct: 180 HDQETKTTTITNVTSCKLESEEMVEIILK--KANK--------LRSTASTASNEHSSRSH 229

Query: 404 SEILKIVFTIYLNILKNNAKTLIGSVLEGLTKFGNMANFDLLGDFLEVMKELISDTEFDN 463
           S     +F I+L+   +NAKT       G   +G +   DL G     + +++ D   + 
Sbjct: 230 S-----IFIIHLS--GSNAKT-------GAHSYGTLNLVDLAGSERINVSQVVGDRLRE- 274

Query: 464 LSSAEVRKALLCI 476
             +  + K+L C+
Sbjct: 275 --TQNINKSLSCL 285


>4UQI-A nrPDB
          Length = 628

 Score = 29.7 bits (65), Expect = 4.5,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 81/192 (42%), Gaps = 17/192 (8%)

Query: 248 LGILATQAAKELISTASHFNFRTDIFTLLLRRI-CKPRISTDPTSIQIIQTFETLLNEDE 306
           L  + T A+ +L     +F     +   LLR + C P         ++ +  ET+LN+ +
Sbjct: 233 LSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQ 292

Query: 307 EGSISFEILRIFNKILKTRNFNIEESVLNMLLSLDVLHDYDPNTKLKG-NVSAPKLKKKD 365
           E            K  K ++ N + +VL   +SL + HD +PN  ++  N     L+ ++
Sbjct: 293 EPP----------KSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRE 342

Query: 366 R----VHLSKKQRKARKEMQQIEEEMRNAEQAVSAEERERNQSEILKIVFTIYLNILKNN 421
                + L      A  E    E    + E  ++A + ER+ S   + V  +Y    ++N
Sbjct: 343 TNLRYLALESMCTLASSEFSH-EAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSN 401

Query: 422 AKTLIGSVLEGL 433
           A+ ++  +L  L
Sbjct: 402 AQQIVAEMLSYL 413


>4ETP-A nrPDB
          Length = 403

 Score = 29.7 bits (65), Expect = 4.8,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 31/163 (19%)

Query: 289 PTSI-QIIQTFETLLNEDEEGSISFEILRIFNK----ILKTRNFNIEESVLNMLLSLDVL 343
           P++I  I      L  +  +  ++ E + I+N+    +L++ N N E++ +   L  ++ 
Sbjct: 167 PSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIG--LKHEIR 224

Query: 344 HDYDPNTKLKGNVSAPKLKKKDRVHLSKKQRKARKEMQQIEEEMRNAEQAVSAEERERNQ 403
           HD +  T    NV++ KL+ ++ V +  K  KA K        +R+     S E   R+ 
Sbjct: 225 HDQETKTTTITNVTSVKLESEEMVEIILK--KANK--------LRSTASTASNEHSSRSH 274

Query: 404 SEILKIVFTIYLNILKNNAKTLIGSVLEGLTKFGNMANFDLLG 446
           S     +F I+L+   +NAKT       G   +G +   DL G
Sbjct: 275 S-----IFIIHLS--GSNAKT-------GAHSYGTLNLVDLAG 303


>5A5T-C nrPDB
          Length = 843

 Score = 29.3 bits (64), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 79  KVNGKVERKLHKAQEKPKDDDEEDEDSNDSSEDDEGPNEEQEAE 122
           K N   E  +   ++ P+   +ED + N+  ED EG ++E E E
Sbjct: 77  KYNRDFESHITNYKQNPEQSADEDAEKNE--EDSEGSSDEDEDE 118


>3J3R-1 nrPDB
          Length = 218

 Score = 29.3 bits (64), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 24/38 (63%)

Query: 371 KKQRKARKEMQQIEEEMRNAEQAVSAEERERNQSEILK 408
           KKQ  A +++  + ++ +  EQAV+ EE+E+    +L+
Sbjct: 95  KKQEPASEDLDALLDDFQKEEQAVNQEEKEQKLQFVLR 132


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.313    0.130    0.355 

Lambda     K      H
   0.267   0.0405    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,991,944
Number of Sequences: 36641
Number of extensions: 968560
Number of successful extensions: 5091
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 3470
Number of HSP's gapped (non-prelim): 875
length of query: 663
length of database: 10,336,785
effective HSP length: 103
effective length of query: 560
effective length of database: 6,562,762
effective search space: 3675146720
effective search space used: 3675146720
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)