BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q06696 (566 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 1W7P-D nrPDB 1166 0.0 1U5T-B nrPDB 347 8e-96 2CAY-A nrPDB 214 1e-55 3VH2-A nrPDB 32 0.52 3T7H-A nrPDB 32 0.62 3V4O-A nrPDB 30 2.9 1BSF-A nrPDB 30 3.1 1NTY-A nrPDB 29 5.9 3V4L-A nrPDB 29 7.0 >1W7P-D nrPDB Length = 566 Score = 1166 bits (3017), Expect = 0.0, Method: Compositional matrix adjust. Identities = 566/566 (100%), Positives = 566/566 (100%) Query: 1 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDA 60 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDA Sbjct: 1 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDA 60 Query: 61 KPTQNSLGLELDDLAYVNYSSGFLTRSPRLILFFKDPSSKDELGKSAETASADVVSTWVC 120 KPTQNSLGLELDDLAYVNYSSGFLTRSPRLILFFKDPSSKDELGKSAETASADVVSTWVC Sbjct: 61 KPTQNSLGLELDDLAYVNYSSGFLTRSPRLILFFKDPSSKDELGKSAETASADVVSTWVC 120 Query: 121 PICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSE 180 PICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSE Sbjct: 121 PICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSE 180 Query: 181 NICPACTFANHPQIGNCEICGHRLPNASKVRSKLNRLNFHDSRVHIELEKNSLARNKSSH 240 NICPACTFANHPQIGNCEICGHRLPNASKVRSKLNRLNFHDSRVHIELEKNSLARNKSSH Sbjct: 181 NICPACTFANHPQIGNCEICGHRLPNASKVRSKLNRLNFHDSRVHIELEKNSLARNKSSH 240 Query: 241 SALSSSSSTGSSTEFVQLSFRKSDGVLFSQATERALENILTEKNKHIFNQNVVSVNGVDM 300 SALSSSSSTGSSTEFVQLSFRKSDGVLFSQATERALENILTEKNKHIFNQNVVSVNGVDM Sbjct: 241 SALSSSSSTGSSTEFVQLSFRKSDGVLFSQATERALENILTEKNKHIFNQNVVSVNGVDM 300 Query: 301 RKGASSHEYNNEVPFIETKLSRIGISSLEKSRENQLLNNDILFNNALTDLNKLMSLATSI 360 RKGASSHEYNNEVPFIETKLSRIGISSLEKSRENQLLNNDILFNNALTDLNKLMSLATSI Sbjct: 301 RKGASSHEYNNEVPFIETKLSRIGISSLEKSRENQLLNNDILFNNALTDLNKLMSLATSI 360 Query: 361 ERLYKNSNITMKTKTLNLQDESTVNEPKTRRPLLILDREKFLNKELFLDEIAREIYEFTL 420 ERLYKNSNITMKTKTLNLQDESTVNEPKTRRPLLILDREKFLNKELFLDEIAREIYEFTL Sbjct: 361 ERLYKNSNITMKTKTLNLQDESTVNEPKTRRPLLILDREKFLNKELFLDEIAREIYEFTL 420 Query: 421 SEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMREACERFEHLGLNELKLVKV 480 SEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMREACERFEHLGLNELKLVKV Sbjct: 421 SEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMREACERFEHLGLNELKLVKV 480 Query: 481 NKRILCVTSEKFDVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCV 540 NKRILCVTSEKFDVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCV Sbjct: 481 NKRILCVTSEKFDVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCV 540 Query: 541 DEGDLLIDKQLSGIYYYKNSYWPSHI 566 DEGDLLIDKQLSGIYYYKNSYWPSHI Sbjct: 541 DEGDLLIDKQLSGIYYYKNSYWPSHI 566 >1U5T-B nrPDB Length = 169 Score = 347 bits (890), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 169/169 (100%), Positives = 169/169 (100%) Query: 396 LDREKFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLI 455 LDREKFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLI Sbjct: 1 LDREKFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLI 60 Query: 456 SPMEMREACERFEHLGLNELKLVKVNKRILCVTSEKFDVVKEKLVDLIGDNPGSDLLRLT 515 SPMEMREACERFEHLGLNELKLVKVNKRILCVTSEKFDVVKEKLVDLIGDNPGSDLLRLT Sbjct: 61 SPMEMREACERFEHLGLNELKLVKVNKRILCVTSEKFDVVKEKLVDLIGDNPGSDLLRLT 120 Query: 516 QILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQLSGIYYYKNSYWPS 564 QILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQLSGIYYYKNSYWPS Sbjct: 121 QILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQLSGIYYYKNSYWPS 169 >2CAY-A nrPDB Length = 145 Score = 214 bits (544), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 100/103 (97%), Positives = 100/103 (97%) Query: 1 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDA 60 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDA Sbjct: 9 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDA 68 Query: 61 KPTQNSLGLELDDLAYVNYSSGFLTRSPRLILFFKDPSSKDEL 103 KPTQNSLGLELDDLAYVNYSSGFLTRSPRLILFFKDPSS E Sbjct: 69 KPTQNSLGLELDDLAYVNYSSGFLTRSPRLILFFKDPSSSTEF 111 Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 39/39 (100%), Positives = 39/39 (100%) Query: 251 SSTEFVQLSFRKSDGVLFSQATERALENILTEKNKHIFN 289 SSTEFVQLSFRKSDGVLFSQATERALENILTEKNKHIFN Sbjct: 107 SSTEFVQLSFRKSDGVLFSQATERALENILTEKNKHIFN 145 >3VH2-A nrPDB Length = 616 Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%) Query: 395 ILDREKFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDL--YAMY 444 +LD K L+K+LFL + A E +E KD+N +++II+ DL Y Y Sbjct: 92 VLDEFKNLDKQLFLHQRALECWE---DGIKDINKCVSFVIISFADLKKYRFY 140 >3T7H-A nrPDB Length = 291 Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%) Query: 395 ILDREKFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDL--YAMY 444 +LD K L+K+LFL + A E +E KD+N +++II+ DL Y Y Sbjct: 91 VLDEFKNLDKQLFLHQRALECWE---DGIKDINKCVSFVIISFADLKKYRFY 139 >3V4O-A nrPDB Length = 245 Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 10/79 (12%) Query: 494 VVKEKLVDLIGD----------NPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEG 543 + K+K+ LIG+ P D+ LT +L + K L + ++N VDE Sbjct: 15 LAKDKVALLIGNMNYREHPKLKAPLVDVYELTNLLRQLDFKVVSLLDLTEYEMRNAVDEF 74 Query: 544 DLLIDKQLSGIYYYKNSYW 562 LL+DK + G+ YY + Sbjct: 75 LLLLDKGVYGLLYYAGHGY 93 >1BSF-A nrPDB Length = 278 Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust. Identities = 11/32 (34%), Positives = 23/32 (71%) Query: 396 LDREKFLNKELFLDEIAREIYEFTLSEFKDLN 427 ++RE+F EL+++ ++ Y+FT+ +FK +N Sbjct: 234 MEREQFEAPELWINPEVKDFYDFTIDDFKLIN 265 >1NTY-A nrPDB Length = 311 Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%) Query: 402 LNKELFLDEIAREIYEF-------TLSEFKDLNSDTNYMIITLVDLYAMY 444 +NKEL + +EIYEF L +++ L D + +T D + MY Sbjct: 51 VNKELIIFGNMQEIYEFHNNIFLKELEKYEQLPEDVGHCFVTWADKFQMY 100 >3V4L-A nrPDB Length = 396 Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 10/74 (13%) Query: 494 VVKEKLVDLIGD----------NPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEG 543 + K+K+ LIG+ P D+ LT +L + K L + + N VDE Sbjct: 14 LAKDKVALLIGNMSYWEHPKLKAPLVDVYELTNLLRQLDFKVVSLLDLTEYEMCNAVDEF 73 Query: 544 DLLIDKQLSGIYYY 557 LL+DK + G+ YY Sbjct: 74 LLLLDKGVYGLLYY 87 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 1W7P-D nrPDB 1205 0.0 1U5T-B nrPDB 362 e-100 2CAY-A nrPDB 223 2e-58 Sequences not found previously or not previously below threshold: 3VH2-A nrPDB 34 0.26 3T7H-A nrPDB 34 0.26 3CUQ-B nrPDB 32 0.72 5MRC-T nrPDB 32 0.76 3J6B-T nrPDB 32 0.76 1BSF-A nrPDB 31 1.2 3V4O-A nrPDB 31 1.2 1NTY-A nrPDB 30 3.2 5V38-A nrPDB 30 4.1 5M3O-A nrPDB 29 5.1 3J4S-A nrPDB 28 9.9 CONVERGED! >1W7P-D nrPDB Length = 566 Score = 1205 bits (3118), Expect = 0.0, Method: Composition-based stats. Identities = 566/566 (100%), Positives = 566/566 (100%) Query: 1 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDA 60 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDA Sbjct: 1 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDA 60 Query: 61 KPTQNSLGLELDDLAYVNYSSGFLTRSPRLILFFKDPSSKDELGKSAETASADVVSTWVC 120 KPTQNSLGLELDDLAYVNYSSGFLTRSPRLILFFKDPSSKDELGKSAETASADVVSTWVC Sbjct: 61 KPTQNSLGLELDDLAYVNYSSGFLTRSPRLILFFKDPSSKDELGKSAETASADVVSTWVC 120 Query: 121 PICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSE 180 PICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSE Sbjct: 121 PICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSE 180 Query: 181 NICPACTFANHPQIGNCEICGHRLPNASKVRSKLNRLNFHDSRVHIELEKNSLARNKSSH 240 NICPACTFANHPQIGNCEICGHRLPNASKVRSKLNRLNFHDSRVHIELEKNSLARNKSSH Sbjct: 181 NICPACTFANHPQIGNCEICGHRLPNASKVRSKLNRLNFHDSRVHIELEKNSLARNKSSH 240 Query: 241 SALSSSSSTGSSTEFVQLSFRKSDGVLFSQATERALENILTEKNKHIFNQNVVSVNGVDM 300 SALSSSSSTGSSTEFVQLSFRKSDGVLFSQATERALENILTEKNKHIFNQNVVSVNGVDM Sbjct: 241 SALSSSSSTGSSTEFVQLSFRKSDGVLFSQATERALENILTEKNKHIFNQNVVSVNGVDM 300 Query: 301 RKGASSHEYNNEVPFIETKLSRIGISSLEKSRENQLLNNDILFNNALTDLNKLMSLATSI 360 RKGASSHEYNNEVPFIETKLSRIGISSLEKSRENQLLNNDILFNNALTDLNKLMSLATSI Sbjct: 301 RKGASSHEYNNEVPFIETKLSRIGISSLEKSRENQLLNNDILFNNALTDLNKLMSLATSI 360 Query: 361 ERLYKNSNITMKTKTLNLQDESTVNEPKTRRPLLILDREKFLNKELFLDEIAREIYEFTL 420 ERLYKNSNITMKTKTLNLQDESTVNEPKTRRPLLILDREKFLNKELFLDEIAREIYEFTL Sbjct: 361 ERLYKNSNITMKTKTLNLQDESTVNEPKTRRPLLILDREKFLNKELFLDEIAREIYEFTL 420 Query: 421 SEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMREACERFEHLGLNELKLVKV 480 SEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMREACERFEHLGLNELKLVKV Sbjct: 421 SEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMREACERFEHLGLNELKLVKV 480 Query: 481 NKRILCVTSEKFDVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCV 540 NKRILCVTSEKFDVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCV Sbjct: 481 NKRILCVTSEKFDVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCV 540 Query: 541 DEGDLLIDKQLSGIYYYKNSYWPSHI 566 DEGDLLIDKQLSGIYYYKNSYWPSHI Sbjct: 541 DEGDLLIDKQLSGIYYYKNSYWPSHI 566 >1U5T-B nrPDB Length = 169 Score = 362 bits (928), Expect = e-100, Method: Composition-based stats. Identities = 169/169 (100%), Positives = 169/169 (100%) Query: 396 LDREKFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLI 455 LDREKFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLI Sbjct: 1 LDREKFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLI 60 Query: 456 SPMEMREACERFEHLGLNELKLVKVNKRILCVTSEKFDVVKEKLVDLIGDNPGSDLLRLT 515 SPMEMREACERFEHLGLNELKLVKVNKRILCVTSEKFDVVKEKLVDLIGDNPGSDLLRLT Sbjct: 61 SPMEMREACERFEHLGLNELKLVKVNKRILCVTSEKFDVVKEKLVDLIGDNPGSDLLRLT 120 Query: 516 QILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQLSGIYYYKNSYWPS 564 QILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQLSGIYYYKNSYWPS Sbjct: 121 QILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQLSGIYYYKNSYWPS 169 >2CAY-A nrPDB Length = 145 Score = 223 bits (568), Expect = 2e-58, Method: Composition-based stats. Identities = 100/103 (97%), Positives = 100/103 (97%) Query: 1 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDA 60 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDA Sbjct: 9 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDA 68 Query: 61 KPTQNSLGLELDDLAYVNYSSGFLTRSPRLILFFKDPSSKDEL 103 KPTQNSLGLELDDLAYVNYSSGFLTRSPRLILFFKDPSS E Sbjct: 69 KPTQNSLGLELDDLAYVNYSSGFLTRSPRLILFFKDPSSSTEF 111 Score = 84.0 bits (206), Expect = 2e-16, Method: Composition-based stats. Identities = 39/39 (100%), Positives = 39/39 (100%) Query: 251 SSTEFVQLSFRKSDGVLFSQATERALENILTEKNKHIFN 289 SSTEFVQLSFRKSDGVLFSQATERALENILTEKNKHIFN Sbjct: 107 SSTEFVQLSFRKSDGVLFSQATERALENILTEKNKHIFN 145 >3VH2-A nrPDB Length = 616 Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%) Query: 395 ILDREKFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDL 440 +LD K L+K+LFL + A E +E KD+N +++II+ DL Sbjct: 92 VLDEFKNLDKQLFLHQRALECWE---DGIKDINKCVSFVIISFADL 134 >3T7H-A nrPDB Length = 291 Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%) Query: 395 ILDREKFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDL 440 +LD K L+K+LFL + A E +E KD+N +++II+ DL Sbjct: 91 VLDEFKNLDKQLFLHQRALECWE---DGIKDINKCVSFVIISFADL 133 >3CUQ-B nrPDB Length = 218 Score = 32.0 bits (71), Expect = 0.72, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 62/132 (46%), Gaps = 10/132 (7%) Query: 344 NNALTDLNKLMSLATSIERLYKNSNITMKTKTLNLQDESTVNEPKTRRPLLILD---REK 400 + A DL+KLM A + L K+ +K K ++ ++ T+ + I + RE Sbjct: 7 SEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKSYLLSMGIANPVTRET 66 Query: 401 FLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEM 460 + + + ++A+++ ++ I++L ++Y + N++ G L+SP ++ Sbjct: 67 YGSGTQYHMQLAKQLAGILQVPLEERGG-----IMSLTEVYCLVNRAR--GMELLSPEDL 119 Query: 461 REACERFEHLGL 472 AC+ E L L Sbjct: 120 VNACKMLEALKL 131 >5MRC-T nrPDB Length = 225 Score = 32.0 bits (71), Expect = 0.76, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 13/111 (11%) Query: 331 SRENQLLNNDI-LFNNALTDL-NKLMSLATSIERLYKNSNITMKTKTLNLQDESTVNEPK 388 +REN LL N + ++ ++L N + + I + + LQDES + Sbjct: 107 ARENHLLKNIVGSTHDEFSELSNSIRTTMWQIRHVLNERELAYSASREFLQDES-----E 161 Query: 389 TRRPLLILDREKFLNKELFLDEIAREIYEFTLSEF------KDLNSDTNYM 433 ++ L L + FLNK++ DE+A + F L+ F +D D N++ Sbjct: 162 RKKFLDTLANDYFLNKDIPDDEVASMLTRFQLAIFGISETIQDNTVDINFI 212 >3J6B-T nrPDB Length = 319 Score = 32.0 bits (71), Expect = 0.76, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 13/111 (11%) Query: 331 SRENQLLNNDI-LFNNALTDL-NKLMSLATSIERLYKNSNITMKTKTLNLQDESTVNEPK 388 +REN LL N + ++ ++L N + + I + + LQDES + Sbjct: 121 ARENHLLKNIVGSTHDEFSELSNSIRTTMWQIRHVLNERELAYSASREFLQDES-----E 175 Query: 389 TRRPLLILDREKFLNKELFLDEIAREIYEFTLSEF------KDLNSDTNYM 433 ++ L L + FLNK++ DE+A + F L+ F +D D N++ Sbjct: 176 RKKFLDTLANDYFLNKDIPDDEVASMLTRFQLAIFGISETIQDNTVDINFI 226 >1BSF-A nrPDB Length = 278 Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 23/32 (71%) Query: 396 LDREKFLNKELFLDEIAREIYEFTLSEFKDLN 427 ++RE+F EL+++ ++ Y+FT+ +FK +N Sbjct: 234 MEREQFEAPELWINPEVKDFYDFTIDDFKLIN 265 >3V4O-A nrPDB Length = 245 Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 10/74 (13%) Query: 494 VVKEKLVDLIGD----------NPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEG 543 + K+K+ LIG+ P D+ LT +L + K L + ++N VDE Sbjct: 15 LAKDKVALLIGNMNYREHPKLKAPLVDVYELTNLLRQLDFKVVSLLDLTEYEMRNAVDEF 74 Query: 544 DLLIDKQLSGIYYY 557 LL+DK + G+ YY Sbjct: 75 LLLLDKGVYGLLYY 88 >1NTY-A nrPDB Length = 311 Score = 29.7 bits (65), Expect = 3.2, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%) Query: 402 LNKELFLDEIAREIYEF-------TLSEFKDLNSDTNYMIITLVDLYAMY 444 +NKEL + +EIYEF L +++ L D + +T D + MY Sbjct: 51 VNKELIIFGNMQEIYEFHNNIFLKELEKYEQLPEDVGHCFVTWADKFQMY 100 >5V38-A nrPDB Length = 435 Score = 29.7 bits (65), Expect = 4.1, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%) Query: 313 VPFIETKLSRIGISSLEKSRENQLLNNDILFNNALTDLNKLMSLATSIERLYKNSN 368 V F E +++ +S+LE S+ +LNN +++N+ + + S I + ++N N Sbjct: 41 VKFSEIDKNQVQLSNLESSKIEVILNNGVIYNSMYENFS--TSFWIRIPKYFRNIN 94 >5M3O-A nrPDB Length = 334 Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 7/99 (7%) Query: 95 KDPSSKDELGKSAETASADVVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVP---AD 151 K+P LG+SA+ + V P + + T G + P + G+P + Sbjct: 105 KEPLPTLPLGRSADVRQGEFVVAMGSPFALQNTITSGIVSSAQRPAR---DLGLPQTNVE 161 Query: 152 YELTKSSINCSNAIDPNANPQNQ-FGVNSENICPACTFA 189 Y T ++I+ N+ P N + GVN+ + +FA Sbjct: 162 YIQTDAAIDFGNSGGPLVNLDGEVIGVNTMKVTAGISFA 200 >3J4S-A nrPDB Length = 484 Score = 28.1 bits (61), Expect = 9.9, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 8/121 (6%) Query: 344 NNALTDLNKLMSLATSIERLYKNSNITMKTKTL---NLQDESTVNEPKTRRPLLILDREK 400 NNAL L+++ +RL+ NS+I + N Q + + K + L + + Sbjct: 177 NNALVLLSEIDEFMREQDRLFGNSDIKPLANVIVNDNTQMQRIIESQKGTKDL----KNR 232 Query: 401 FLN-KELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPME 459 ++N KE+ D + ++E + + + Y L+ L ++ + + IG I+ + Sbjct: 233 YVNWKEVANDNVVSTLHEINIIPENYGSDNVTYDPSDLIKLLSIPGRFLTIGKARIAKFD 292 Query: 460 M 460 + Sbjct: 293 L 293 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.314 0.133 0.383 Lambda K H 0.267 0.0411 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,554,238 Number of Sequences: 36641 Number of extensions: 869721 Number of successful extensions: 2425 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 26 Number of HSP's that attempted gapping in prelim test: 2404 Number of HSP's gapped (non-prelim): 45 length of query: 566 length of database: 10,336,785 effective HSP length: 102 effective length of query: 464 effective length of database: 6,599,403 effective search space: 3062122992 effective search space used: 3062122992 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 62 (28.5 bits)