BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q06287
         (252 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

2V3J-A nrPDB                                                          518   e-147
5OQL-e nrPDB                                                          349   7e-97
5FAI-A nrPDB                                                          234   3e-62
3BBD-A nrPDB                                                           74   7e-14
3O7B-A nrPDB                                                           65   3e-11
5ZHM-A nrPDB                                                           29   2.5  
6MGG-B nrPDB                                                           28   2.9  

>2V3J-A nrPDB
          Length = 258

 Score =  518 bits (1333), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 252/252 (100%), Positives = 252/252 (100%)

Query: 1   MVEDSRVRDALKGGDQKALPASLVPQAPPVLTSKDKITKRMIVVLAMASLETHKISSNGP 60
           MVEDSRVRDALKGGDQKALPASLVPQAPPVLTSKDKITKRMIVVLAMASLETHKISSNGP
Sbjct: 1   MVEDSRVRDALKGGDQKALPASLVPQAPPVLTSKDKITKRMIVVLAMASLETHKISSNGP 60

Query: 61  GGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGI 120
           GGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGI
Sbjct: 61  GGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGI 120

Query: 121 LIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTL 180
           LIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTL
Sbjct: 121 LIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTL 180

Query: 181 SFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSK 240
           SFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSK
Sbjct: 181 SFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSK 240

Query: 241 FCHGAEDAWNIL 252
           FCHGAEDAWNIL
Sbjct: 241 FCHGAEDAWNIL 252


>5OQL-e nrPDB
          Length = 252

 Score =  349 bits (895), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 168/239 (70%), Positives = 200/239 (83%), Gaps = 5/239 (2%)

Query: 18  ALPASLVPQAPPVLTSKDKITKRMIVVLAMASLETHKISS----NGPGGDKYVLLNCDDH 73
           ALP  +  Q  P+    DK TKR+IVVL+ ASLET+K S     NG   +KY LLN D+H
Sbjct: 15  ALPQLVAEQHVPI-PPNDKDTKRLIVVLSNASLETYKASHGTNRNGVREEKYTLLNSDEH 73

Query: 74  QGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRT 133
            G+++KM RDIS+ARPDITHQCLLTLLDSPINKAGKLQ+YIQT++G+LIEV+PTVRIPRT
Sbjct: 74  IGIMRKMNRDISDARPDITHQCLLTLLDSPINKAGKLQIYIQTAKGVLIEVSPTVRIPRT 133

Query: 134 FKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYI 193
           FKRF+GLMVQLLH+LSI+  N+ EKLLKVI+NPITDHLP  CRKVTLSFDAP++RV+DY+
Sbjct: 134 FKRFAGLMVQLLHRLSIKGTNTNEKLLKVIQNPITDHLPPNCRKVTLSFDAPLVRVRDYV 193

Query: 194 EKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNIL 252
           + L  +ESICVFVGAMA+G DNFAD YVDEK+ +SNY LSASVACSKFCH  EDAW+I+
Sbjct: 194 DTLGPNESICVFVGAMAKGPDNFADAYVDEKISISNYSLSASVACSKFCHACEDAWDII 252


>5FAI-A nrPDB
          Length = 232

 Score =  234 bits (596), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 157/240 (65%), Gaps = 11/240 (4%)

Query: 14  GDQKALPASLVPQAPPVLTSKDKIT-KRMIVVLAMASLETHKISSNGPGGDKYVLLNCDD 72
           G ++A     +P   P L + +KI  +R+IVVL  ASLET K+      G  Y LLNCD 
Sbjct: 3   GGEQAQDWDALPPKRPRLGAGNKIGGRRLIVVLEGASLETVKV------GKTYELLNCDK 56

Query: 73  HQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPR 132
           H+ +L K GRD  EARPDITHQ LL L+DSP+N+AG LQVYI T + +LIEVNP  RIPR
Sbjct: 57  HKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPR 116

Query: 133 TFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDY 192
           TF RF GLMVQLLHKLS+R+ +  +KLLKVIKNP++DH P  C KV  SF  PV  V D 
Sbjct: 117 TFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSIPV--VSDV 174

Query: 193 IEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNIL 252
            E +   + I   VGA A GK   + EY ++ V +SNYPLSA++ C+K     E+ W ++
Sbjct: 175 RELVPSSDPIVFVVGAFAHGK--VSVEYTEKMVSISNYPLSAALTCAKLTTAFEEVWGVI 232


>3BBD-A nrPDB
          Length = 205

 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 14/183 (7%)

Query: 64  KYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIE 123
           KY +L+ + H   ++K+       RPDI H  LL +LDSPIN   KL +YI T    +++
Sbjct: 30  KYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLNIYIHTYDDKVLK 89

Query: 124 VNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFD 183
           +NP  R+PR + RF G+M ++L       +  EEK L+ + N I        +K+ +   
Sbjct: 90  INPETRLPRNYFRFLGVMEKVLKGERNHLIKMEEKTLEDLLNEIN------AKKIAIMTK 143

Query: 184 APVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVD---EKVGLSNYPLSASVACSK 240
              +     +++ D        +G    GK     E V    +++ + N  L A   C  
Sbjct: 144 TGKLTHPKLLKEYD-----TFIIGGFPYGKLKINKEKVFGDIKEISIYNKGLMAWTVCGI 198

Query: 241 FCH 243
            C+
Sbjct: 199 ICY 201


>3O7B-A nrPDB
          Length = 244

 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 21/162 (12%)

Query: 66  VLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVN 125
           +LL+   H   +K +       RPDI HQCLL LLDSP+      +VY+ T  G +I VN
Sbjct: 64  ILLDDSKHHTAMKSLEFREKRGRPDIVHQCLLLLLDSPLR---DFEVYVHTLNGEIIWVN 120

Query: 126 PTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAP 185
              R+PR + RF GLM +L           EE+ +      + +      R +    D  
Sbjct: 121 RETRLPRNYNRFVGLMEKLF----------EERRITAGDTTLIEFKDVGLRDIVRGRDVL 170

Query: 186 VIRVQ----DYIEKLDDDESICVFVGAMARGKDNFADEYVDE 223
           + R +    ++ E LD D ++C  +GA   G  +F +E + E
Sbjct: 171 LFREKGGRFEFSELLDGDVAVC--IGAFPHG--DFFEETLRE 208


>5ZHM-A nrPDB
          Length = 269

 Score = 28.9 bits (63), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 176 RKVTLSFDAPVIR--VQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLS 233
           RK  + + +P  R   Q  + +L ++E++ +  G      + F +E+VDE+  + +Y LS
Sbjct: 104 RKAKVIYLSPQGRQLTQAGVRELAEEEALILIAGRYEGIDERFIEEHVDEEWSIGDYVLS 163

Query: 234 AS 235
             
Sbjct: 164 GG 165


>6MGG-B nrPDB
          Length = 387

 Score = 28.5 bits (62), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 19/149 (12%)

Query: 62  GDKYVLLNCDDHQGLLKKMG--------RDISEARPDITHQCLLTLL----DSPINKAGK 109
           G K+ ++    H G   K G        ++  E    +  + L+T        P+N  G 
Sbjct: 39  GGKFAVVKAQVHAGGRGKAGGVKVVKSSQETREVAESLIGKNLVTFQTDAEGQPVNSVGV 98

Query: 110 LQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSV--NSEEKLLKVIKNPI 167
            +     +R    E+     + R+ ++ +  M      + I  V  NS EK+LKV  +P+
Sbjct: 99  FEDVYPVTR----ELYLGAVVDRSSRKVT-FMASTEGGVDIEEVAHNSPEKILKVEVDPL 153

Query: 168 TDHLPTKCRKVTLSFDAPVIRVQDYIEKL 196
               P + R+V         ++ D+++ +
Sbjct: 154 VGLQPFQAREVAFKLGLEGKQINDFVKTM 182


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

2V3J-A nrPDB                                                          407   e-114
5OQL-e nrPDB                                                          360   e-100
5FAI-A nrPDB                                                          337   3e-93
3BBD-A nrPDB                                                          231   3e-61
3O7B-A nrPDB                                                          179   1e-45

Sequences not found previously or not previously below threshold:

4V03-A nrPDB                                                           37   0.007
1LLQ-A nrPDB                                                           32   0.28 
3R9I-A nrPDB                                                           30   1.1  
2F3D-A nrPDB                                                           28   5.1  
5YJE-A nrPDB                                                           27   6.7  


CONVERGED!
>2V3J-A nrPDB
          Length = 258

 Score =  407 bits (1046), Expect = e-114,   Method: Composition-based stats.
 Identities = 252/252 (100%), Positives = 252/252 (100%)

Query: 1   MVEDSRVRDALKGGDQKALPASLVPQAPPVLTSKDKITKRMIVVLAMASLETHKISSNGP 60
           MVEDSRVRDALKGGDQKALPASLVPQAPPVLTSKDKITKRMIVVLAMASLETHKISSNGP
Sbjct: 1   MVEDSRVRDALKGGDQKALPASLVPQAPPVLTSKDKITKRMIVVLAMASLETHKISSNGP 60

Query: 61  GGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGI 120
           GGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGI
Sbjct: 61  GGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGI 120

Query: 121 LIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTL 180
           LIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTL
Sbjct: 121 LIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTL 180

Query: 181 SFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSK 240
           SFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSK
Sbjct: 181 SFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSK 240

Query: 241 FCHGAEDAWNIL 252
           FCHGAEDAWNIL
Sbjct: 241 FCHGAEDAWNIL 252


>5OQL-e nrPDB
          Length = 252

 Score =  360 bits (923), Expect = e-100,   Method: Composition-based stats.
 Identities = 168/239 (70%), Positives = 200/239 (83%), Gaps = 5/239 (2%)

Query: 18  ALPASLVPQAPPVLTSKDKITKRMIVVLAMASLETHKISS----NGPGGDKYVLLNCDDH 73
           ALP  +  Q  P+    DK TKR+IVVL+ ASLET+K S     NG   +KY LLN D+H
Sbjct: 15  ALPQLVAEQHVPI-PPNDKDTKRLIVVLSNASLETYKASHGTNRNGVREEKYTLLNSDEH 73

Query: 74  QGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRT 133
            G+++KM RDIS+ARPDITHQCLLTLLDSPINKAGKLQ+YIQT++G+LIEV+PTVRIPRT
Sbjct: 74  IGIMRKMNRDISDARPDITHQCLLTLLDSPINKAGKLQIYIQTAKGVLIEVSPTVRIPRT 133

Query: 134 FKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYI 193
           FKRF+GLMVQLLH+LSI+  N+ EKLLKVI+NPITDHLP  CRKVTLSFDAP++RV+DY+
Sbjct: 134 FKRFAGLMVQLLHRLSIKGTNTNEKLLKVIQNPITDHLPPNCRKVTLSFDAPLVRVRDYV 193

Query: 194 EKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNIL 252
           + L  +ESICVFVGAMA+G DNFAD YVDEK+ +SNY LSASVACSKFCH  EDAW+I+
Sbjct: 194 DTLGPNESICVFVGAMAKGPDNFADAYVDEKISISNYSLSASVACSKFCHACEDAWDII 252


>5FAI-A nrPDB
          Length = 232

 Score =  337 bits (864), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 124/240 (51%), Positives = 157/240 (65%), Gaps = 11/240 (4%)

Query: 14  GDQKALPASLVPQAPPVLTSKDKIT-KRMIVVLAMASLETHKISSNGPGGDKYVLLNCDD 72
           G ++A     +P   P L + +KI  +R+IVVL  ASLET K+      G  Y LLNCD 
Sbjct: 3   GGEQAQDWDALPPKRPRLGAGNKIGGRRLIVVLEGASLETVKV------GKTYELLNCDK 56

Query: 73  HQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPR 132
           H+ +L K GRD  EARPDITHQ LL L+DSP+N+AG LQVYI T + +LIEVNP  RIPR
Sbjct: 57  HKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPR 116

Query: 133 TFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDY 192
           TF RF GLMVQLLHKLS+R+ +  +KLLKVIKNP++DH P  C KV  SF  PV  V D 
Sbjct: 117 TFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSIPV--VSDV 174

Query: 193 IEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNIL 252
            E +   + I   VGA A GK   + EY ++ V +SNYPLSA++ C+K     E+ W ++
Sbjct: 175 RELVPSSDPIVFVVGAFAHGK--VSVEYTEKMVSISNYPLSAALTCAKLTTAFEEVWGVI 232


>3BBD-A nrPDB
          Length = 205

 Score =  231 bits (588), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 18/209 (8%)

Query: 43  VVLAMASLE----THKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLT 98
           ++LA ++LE      K         KY +L+ + H   ++K+       RPDI H  LL 
Sbjct: 5   IILAKSALELIPEEIKNKIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLN 64

Query: 99  LLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEK 158
           +LDSPIN   KL +YI T    ++++NP  R+PR + RF G+M ++L       +  EEK
Sbjct: 65  ILDSPINHEKKLNIYIHTYDDKVLKINPETRLPRNYFRFLGVMEKVLKGERNHLIKMEEK 124

Query: 159 LLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFAD 218
            L+ + N I        +K+ +      +     +++ D        +G    GK     
Sbjct: 125 TLEDLLNEIN------AKKIAIMTKTGKLTHPKLLKEYD-----TFIIGGFPYGKLKINK 173

Query: 219 EYVD---EKVGLSNYPLSASVACSKFCHG 244
           E V    +++ + N  L A   C   C+ 
Sbjct: 174 EKVFGDIKEISIYNKGLMAWTVCGIICYS 202


>3O7B-A nrPDB
          Length = 244

 Score =  179 bits (454), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 87/199 (43%), Gaps = 27/199 (13%)

Query: 59  GPGGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSR 118
           G   +K +LL+   H   +K +       RPDI HQCLL LLDSP+      +VY+ T  
Sbjct: 58  GKRPEK-ILLDDSKHHTAMKSLEFREKRGRPDIVHQCLLLLLDSPLR---DFEVYVHTLN 113

Query: 119 GILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKV 178
           G +I VN   R+PR + RF GLM +L           EE+ +      + +      R +
Sbjct: 114 GEIIWVNRETRLPRNYNRFVGLMEKLF----------EERRITAGDTTLIEFKDVGLRDI 163

Query: 179 TLSFDAPVIRVQ----DYIEKLDDDESICVFVGAMARGKDNFADEYVDE-----KVGLSN 229
               D  + R +    ++ E LD D ++C  +GA   G  +F +E + E     +V L  
Sbjct: 164 VRGRDVLLFREKGGRFEFSELLDGDVAVC--IGAFPHG--DFFEETLRELGEFKEVSLGT 219

Query: 230 YPLSASVACSKFCHGAEDA 248
              ++    S+     E  
Sbjct: 220 ESYTSLYVTSRVLCEYERV 238


>4V03-A nrPDB
          Length = 257

 Score = 37.1 bits (84), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 99  LLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHK 147
           L+DSP       Q+ +  +   LI VNP V   R   R  GL+  +  +
Sbjct: 119 LVDSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKR 167


>1LLQ-A nrPDB
          Length = 605

 Score = 31.7 bits (70), Expect = 0.28,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 73/218 (33%), Gaps = 30/218 (13%)

Query: 55  ISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYI 114
           +      G  Y  L  +  +   KK G+       D  +     LLD   +K       I
Sbjct: 237 LRHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDDI 296

Query: 115 QTSRGILI-------EVNPTVRIPRTFKRF------SGLMVQLLHKLSIRSVNSEEKLLK 161
           Q +  +++        V   +     +  F      +G+   ++H++    ++ EE   +
Sbjct: 297 QGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNR 356

Query: 162 VIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKD------- 214
           +    I          VT +      R   + + + +  SI   + A   G         
Sbjct: 357 IYLMDIDGL-------VTKNRKEMNPRHVQFAKDMPETTSILEVIRAARPGALIGASTVR 409

Query: 215 -NFADEYVDEKVGLSNYPLSASVA--CSKFCHGAEDAW 249
             F +E +     ++  P+  +++   SK    AE+A+
Sbjct: 410 GAFNEEVIRAMAEINERPIIFALSNPTSKAECTAEEAY 447


>3R9I-A nrPDB
          Length = 260

 Score = 29.7 bits (65), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 4/106 (3%)

Query: 97  LTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSE 156
             + DSP        + +  +   +I  NP V   R   R  G    +L   S R+ N E
Sbjct: 116 FIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILG----ILASKSRRAENGE 171

Query: 157 EKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESI 202
           E + + +     +        +    D   I     +  + +D+S+
Sbjct: 172 EPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSV 217


>2F3D-A nrPDB
          Length = 338

 Score = 27.8 bits (60), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 7/68 (10%)

Query: 53  HKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEAR-------PDITHQCLLTLLDSPIN 105
           +  +   P G   +L  C+    +++K G   +  +       P   HQ    +L SP +
Sbjct: 265 YPANKKSPKGKLRLLYECNPMAYVMEKAGGLATTGKEAVLDIVPTDIHQRAPIILGSPED 324

Query: 106 KAGKLQVY 113
               L++Y
Sbjct: 325 VTELLEIY 332


>5YJE-A nrPDB
          Length = 380

 Score = 27.4 bits (59), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 20/47 (42%)

Query: 200 ESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAE 246
           E+    VG +   +     E  + +  L++  L+A+ +C   C   E
Sbjct: 65  ENEVTVVGGVKLSRLKCNREGKEWETVLTSRILTAAGSCDVVCVACE 111


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.310    0.126    0.326 

Lambda     K      H
   0.267   0.0390    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,631,731
Number of Sequences: 36641
Number of extensions: 302697
Number of successful extensions: 781
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 750
Number of HSP's gapped (non-prelim): 22
length of query: 252
length of database: 10,336,785
effective HSP length: 95
effective length of query: 157
effective length of database: 6,855,890
effective search space: 1076374730
effective search space used: 1076374730
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 58 (27.0 bits)