BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q05029
         (724 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

4IN3-B nrPDB                                                         1493   0.0  
4YG8-B nrPDB                                                          119   4e-27
5TGT-A nrPDB                                                           33   0.32 
4O94-A nrPDB                                                           33   0.32 
4LW2-A nrPDB                                                           33   0.63 
1CI3-M nrPDB                                                           31   1.8  
6I7T-C nrPDB                                                           30   4.1  
2Q28-A nrPDB                                                           30   4.4  
3O1K-A nrPDB                                                           28   9.9  

>4IN3-B nrPDB
          Length = 739

 Score = 1493 bits (3865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 724/724 (100%), Positives = 724/724 (100%)

Query: 1   MLSQTSIPEVKEDVIGYALHQRRARVGQFQDLGPPDLITLIKSLPSSSSTTTATASANDN 60
           MLSQTSIPEVKEDVIGYALHQRRARVGQFQDLGPPDLITLIKSLPSSSSTTTATASANDN
Sbjct: 1   MLSQTSIPEVKEDVIGYALHQRRARVGQFQDLGPPDLITLIKSLPSSSSTTTATASANDN 60

Query: 61  GATSNINGQDPTTIVTELHSHDKLKGQIGTFFYCMGIDTSDPTSITIFAKKITDLFLDTP 120
           GATSNINGQDPTTIVTELHSHDKLKGQIGTFFYCMGIDTSDPTSITIFAKKITDLFLDTP
Sbjct: 61  GATSNINGQDPTTIVTELHSHDKLKGQIGTFFYCMGIDTSDPTSITIFAKKITDLFLDTP 120

Query: 121 QIWFGKKKHFHVSKISISSWNAFRKYDVNIIVHIPGTVQTYIINSDGEQSQLPSVAEASS 180
           QIWFGKKKHFHVSKISISSWNAFRKYDVNIIVHIPGTVQTYIINSDGEQSQLPSVAEASS
Sbjct: 121 QIWFGKKKHFHVSKISISSWNAFRKYDVNIIVHIPGTVQTYIINSDGEQSQLPSVAEASS 180

Query: 181 GRNSQDLNVNMIWAETFMSGIVRDIMIMKDNRADGESQNLVETLIFNPFTSGELEDVANN 240
           GRNSQDLNVNMIWAETFMSGIVRDIMIMKDNRADGESQNLVETLIFNPFTSGELEDVANN
Sbjct: 181 GRNSQDLNVNMIWAETFMSGIVRDIMIMKDNRADGESQNLVETLIFNPFTSGELEDVANN 240

Query: 241 FIKLFPLVYEKGVYLDAPTHVLNPSLTNNYLVETLVEIVRLTKSLEACRKMLKKLIEIHP 300
           FIKLFPLVYEKGVYLDAPTHVLNPSLTNNYLVETLVEIVRLTKSLEACRKMLKKLIEIHP
Sbjct: 241 FIKLFPLVYEKGVYLDAPTHVLNPSLTNNYLVETLVEIVRLTKSLEACRKMLKKLIEIHP 300

Query: 301 EAVIILIRVYFACDLEIDAVDLINEQLNSPSSFLADDSKTSHIQLIFKSELLSIQSEFLL 360
           EAVIILIRVYFACDLEIDAVDLINEQLNSPSSFLADDSKTSHIQLIFKSELLSIQSEFLL
Sbjct: 301 EAVIILIRVYFACDLEIDAVDLINEQLNSPSSFLADDSKTSHIQLIFKSELLSIQSEFLL 360

Query: 361 DVKRDYKLAKEVAMEAVNCAPNEFKTWYLLTRIYIKLNDMSNALLSLNACPMSQVKEKYV 420
           DVKRDYKLAKEVAMEAVNCAPNEFKTWYLLTRIYIKLNDMSNALLSLNACPMSQVKEKYV
Sbjct: 361 DVKRDYKLAKEVAMEAVNCAPNEFKTWYLLTRIYIKLNDMSNALLSLNACPMSQVKEKYV 420

Query: 421 LRRIAPITSDENLHLPLPLDASIEEISSLNPMDVQLEQKSADPNLVNLSASSLKSTFQLA 480
           LRRIAPITSDENLHLPLPLDASIEEISSLNPMDVQLEQKSADPNLVNLSASSLKSTFQLA
Sbjct: 421 LRRIAPITSDENLHLPLPLDASIEEISSLNPMDVQLEQKSADPNLVNLSASSLKSTFQLA 480

Query: 481 YKLLTEIVQITGWEQLLKYRSKIFVMEDEYQGSTSSIDEAEVRGNDISKMRSKRLCERWL 540
           YKLLTEIVQITGWEQLLKYRSKIFVMEDEYQGSTSSIDEAEVRGNDISKMRSKRLCERWL
Sbjct: 481 YKLLTEIVQITGWEQLLKYRSKIFVMEDEYQGSTSSIDEAEVRGNDISKMRSKRLCERWL 540

Query: 541 DNLFMLLYEDLKTYTDWQSEQLYFDAQNSKYHKLTVEWELFGLCAKRLGHLPEAAKAFQI 600
           DNLFMLLYEDLKTYTDWQSEQLYFDAQNSKYHKLTVEWELFGLCAKRLGHLPEAAKAFQI
Sbjct: 541 DNLFMLLYEDLKTYTDWQSEQLYFDAQNSKYHKLTVEWELFGLCAKRLGHLPEAAKAFQI 600

Query: 601 GLSQRFSPVCAKNLLQFYIDEHKRIRRDSVSANSELTSSQILSSINDIDSSIIDLVVKIC 660
           GLSQRFSPVCAKNLLQFYIDEHKRIRRDSVSANSELTSSQILSSINDIDSSIIDLVVKIC
Sbjct: 601 GLSQRFSPVCAKNLLQFYIDEHKRIRRDSVSANSELTSSQILSSINDIDSSIIDLVVKIC 660

Query: 661 CWNHRWYIEFSIILIDALSVAVQDMGITKVHNEIASRFSDPVAQLIDDNILNFLKNFTND 720
           CWNHRWYIEFSIILIDALSVAVQDMGITKVHNEIASRFSDPVAQLIDDNILNFLKNFTND
Sbjct: 661 CWNHRWYIEFSIILIDALSVAVQDMGITKVHNEIASRFSDPVAQLIDDNILNFLKNFTND 720

Query: 721 TFDN 724
           TFDN
Sbjct: 721 TFDN 724


>4YG8-B nrPDB
          Length = 754

 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 187/785 (23%), Positives = 307/785 (39%), Gaps = 178/785 (22%)

Query: 6   SIPEVKEDVIGYALHQRRARVGQFQDLGPPDLITLIKSLPSSSSTTTATASANDNGATSN 65
           S P + E   G  LH R                 LIK L SS +                
Sbjct: 42  SCPRIMERQFGECLHNRTH---------------LIKDLISSGNV--------------- 71

Query: 66  INGQDPTTIVTELHSHDKLKGQIGTFFYCMGIDTSDPTSITIFAKKITDLFLDTPQIWFG 125
             G  P  IV   + +   K + G +FY  GI+ S P     F + +             
Sbjct: 72  --GLGPIEIVHMSYLNKHEKEEFGEYFYVTGIEVSGPAMPVEFLEVLKS----------S 119

Query: 126 KKKHFHVSK---ISISSWNAFRKYDVNIIVHIPGTVQTYIINSDGEQSQLPSVAEASSGR 182
           K+   ++S    ++   +N F   D+ I      T QT  I+ + E + L    +     
Sbjct: 120 KRISKNISNNIILTYCCFNFFSNLDIRIRYDADDTFQTTAIDCNKETTDLTMTEK----- 174

Query: 183 NSQDLNVNMIWAETFMSGIVRDIMIMKDNRADGESQNLVETLIFNPFTSGE-----LEDV 237
                    +W ETF S ++R   I+ +   + +   LVE     PF  G+      + +
Sbjct: 175 ---------MWEETFASSVIR--AIITNTNPELKPPGLVEC----PFYVGKDTISSCKKI 219

Query: 238 ANNFIKLFPLVYEKGVYLDAPTHVLNPSLTNNYLVETLVEIVRLTKSL-----EACRKML 292
                +  P     G      T  +  ++ NNYL+ +L   + +T SL     +  + + 
Sbjct: 220 IELLCRFLPRSLNCGW---DSTKSMQATIVNNYLMYSLKSFIAITPSLVDFTIDYLKGLT 276

Query: 293 KK--LIEIHPEAVIILIRVYFACDLEIDAVDLINEQLNSPSSFLAD----DSKTSHIQLI 346
           KK  + +I+ +  +I I  +     E+D + ++NE L+   S L D    D+ ++ +   
Sbjct: 277 KKDPIHDIYYKTAMITILDHIETK-ELDMITILNETLDPLLSLLNDLPPRDADSARLMNC 335

Query: 347 FKSELLSIQSEFLLD---------------------VKRDYKLAK--------EVAMEAV 377
             S+LL+IQ+ FLL+                      +  Y LA+        E A+ A+
Sbjct: 336 M-SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAI 394

Query: 378 NCAP------NEFKTWY--LLTRIYIK--LN-----------DMSNALLSLNACPMSQVK 416
           N  P         +T Y   LT  Y K  LN           + +N   +L      ++K
Sbjct: 395 NSMPRLRKNDGHLETMYSRFLTSNYYKKPLNGTREHYDLTAMEFTNLSGTLRNWKEDELK 454

Query: 417 EKYVLRRIAPITSD---------ENLHLPLPLDASIEEISSLNPMDVQLEQKSADPNLV- 466
            + +  RIA I            +++ + L      + ++ +N +  Q  +   + NL+ 
Sbjct: 455 RQ-IFGRIAMINEKKIGYTKEIWDDIAIKLGPICGPQSVNLINYVSPQEVKNIKNINLIA 513

Query: 467 -NLSASSLKSTFQLAYKLLTEIVQITGWEQLLKYRSKIFVMEDE-YQGSTSSIDEAEVRG 524
            N     L       Y LL EIV   GW  LL  R++ F+ME E YQ S + IDE    G
Sbjct: 514 RNTIGKQLGWFSGKIYGLLMEIVNKIGWNGLLNIRTEAFMMETEFYQASNNIIDE---NG 570

Query: 525 NDISKMRSKRLCERWLDNLFMLLYEDLKTYTDWQSEQLYFDAQNSKYHKLTVEWELFGLC 584
           +   + R KR CE WLD+LF+ LY+DLK        ++    ++ K+  L  EWEL GL 
Sbjct: 571 HIPMESRKKRFCEGWLDDLFLDLYQDLKL------SKISLSNKDEKHSGL--EWELLGLI 622

Query: 585 AKRLGHLPEAAKAFQIGLSQRFSPVCAKNLLQFYIDEHKRIRRDSVSANSELTSSQILSS 644
             R  H  +A    +  +  RF PV  + LL+ Y+   K I+                 +
Sbjct: 623 MLRTWHWEDAVACLRTSIVARFDPVSCQQLLKIYLQPPKNIQE---------------VT 667

Query: 645 INDIDSSIIDLVVKICCWNHRWYIEFSIILIDALSVAVQDMGITKVHNEI--ASRFSDPV 702
           + D D +II L++K   ++ R+Y    I  +  L     ++G   + N+I       D +
Sbjct: 668 LLDTD-TIISLLIKKISYDCRYYNYCQIFNLQLLEKLCNELGTHILRNKILLQPSIGDEI 726

Query: 703 AQLID 707
             +ID
Sbjct: 727 MVMID 731


>5TGT-A nrPDB
          Length = 502

 Score = 33.5 bits (75), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 437 LPLDASIEEISSLNPMDVQLEQKSADPNLVNLSASSLKSTFQLAYKLLTEIVQITGWEQL 496
           +PLDAS+ E   L+P  V+         ++ L    L+S  Q   + +T  +Q       
Sbjct: 385 VPLDASLFEHKKLDPTQVR--------QVLQLVLWKLESLRQWEKERITGCIQAVAEHLQ 436

Query: 497 LKYRSKIFVMEDEYQGSTSSI---DEAEVRGNDISKMRSKRLCE 537
           LK R  + +M     G  SS+   D  E+ G D+S+ R ++  E
Sbjct: 437 LKLRDVMPLMFPAITGHASSVSVLDAMEILGADLSRYRLRQALE 480


>4O94-A nrPDB
          Length = 333

 Score = 33.5 bits (75), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 5/67 (7%)

Query: 640 QILSSINDIDSSIIDLVVKICCWNHRWYIEFSIILIDALSVAVQDMGITKVHNEIASRFS 699
           ++   I + D  +ID +V +   N +W+   S  L DA+  A+ +   TKV+N++A + +
Sbjct: 221 EVQKDITESDHGVIDYMVVV---NAKWWNGLSKDLQDAMKKAMDEA--TKVNNDVAGKLN 275

Query: 700 DPVAQLI 706
           D   Q I
Sbjct: 276 DEAKQKI 282


>4LW2-A nrPDB
          Length = 404

 Score = 32.7 bits (73), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 22/96 (22%)

Query: 225 IFNPFTSGELEDVANNFIKLFPLVYEKGVYLDAPTHVLNPSL------------TNNYLV 272
           +FNP            F   FP + + GVYLD+    L P                N   
Sbjct: 6   VFNP----------AQFRAQFPALQDAGVYLDSAATALKPEAVVEATQQFYSLSAGNVHR 55

Query: 273 ETLVEIVRLTKSLEACRKMLKKLIEIHPEAVIILIR 308
               E  RLT   EA R+ + +L+    +  I+  R
Sbjct: 56  SQFAEAQRLTARYEAAREKVAQLLNAPDDKTIVWTR 91


>1CI3-M nrPDB
          Length = 249

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 46  SSSSTTTATASANDNGATSNINGQDPTTIVTELHSHDKLKGQIGTFFYCMGIDTSDPTSI 105
           S++   TA A A+D  A   I  +D TTIV ++ +  +L    G         T++P ++
Sbjct: 175 SAAGVITAIAKADDGSAEVKIRTEDGTTIVDKIPAGPELIVSEGEEVAAGAALTNNP-NV 233

Query: 106 TIFAKKITDLFLDTP 120
             F +K T++ L +P
Sbjct: 234 GGFGQKDTEIVLQSP 248


>6I7T-C nrPDB
          Length = 651

 Score = 30.0 bits (66), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 32  LGPPDLITLIKSLPSSSSTTTATASANDNGATSNINGQDPTTIVTELHSHD--------- 82
           +GP    T+  S P+S++TT   +SA  +  TS+ +   PT I  E+ S +         
Sbjct: 165 VGPNASSTVSASAPASTTTTLPASSAALSAGTSSASTNTPTAIQQEIASSNASDVAKTLA 224

Query: 83  KLKGQIGTFFYCMGIDTSDPT 103
            +  + G F    GI +  PT
Sbjct: 225 SISLEAGEFNVIPGISSVIPT 245


>2Q28-A nrPDB
          Length = 564

 Score = 29.6 bits (65), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 28/51 (54%)

Query: 252 GVYLDAPTHVLNPSLTNNYLVETLVEIVRLTKSLEACRKMLKKLIEIHPEA 302
           GVYLD P +VL  ++  +  + T+V++   + +L  C K +   I +  +A
Sbjct: 161 GVYLDLPANVLAATMEKDEALTTIVKVENPSPALLPCPKSVTSAISLLAKA 211


>3O1K-A nrPDB
          Length = 132

 Score = 28.5 bits (62), Expect = 9.9,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%)

Query: 193 WAETFMSGIVRDIMIMKDNRADGESQNLVETLIFNPFTSGELEDVANNFIKLFPLVYEK 251
           W +     +V D+ +  DNRA G+S ++ + L +   +   LE +      L   V E+
Sbjct: 35  WEQQIKQKLVLDLEMAHDNRAAGKSDDVADALDYAQVSQAVLEHIEQGRFLLVERVAEE 93


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

4IN3-B nrPDB                                                         1145   0.0  
4YG8-B nrPDB                                                          807   0.0  

Sequences not found previously or not previously below threshold:

3UA4-A nrPDB                                                           30   4.5  
4E11-A nrPDB                                                           29   5.9  
3QDE-A nrPDB                                                           29   6.0  
3ZN3-A nrPDB                                                           29   7.1  
4UP8-A nrPDB                                                           29   8.6  


CONVERGED!
>4IN3-B nrPDB
          Length = 739

 Score = 1145 bits (2962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 724/724 (100%), Positives = 724/724 (100%)

Query: 1   MLSQTSIPEVKEDVIGYALHQRRARVGQFQDLGPPDLITLIKSLPSSSSTTTATASANDN 60
           MLSQTSIPEVKEDVIGYALHQRRARVGQFQDLGPPDLITLIKSLPSSSSTTTATASANDN
Sbjct: 1   MLSQTSIPEVKEDVIGYALHQRRARVGQFQDLGPPDLITLIKSLPSSSSTTTATASANDN 60

Query: 61  GATSNINGQDPTTIVTELHSHDKLKGQIGTFFYCMGIDTSDPTSITIFAKKITDLFLDTP 120
           GATSNINGQDPTTIVTELHSHDKLKGQIGTFFYCMGIDTSDPTSITIFAKKITDLFLDTP
Sbjct: 61  GATSNINGQDPTTIVTELHSHDKLKGQIGTFFYCMGIDTSDPTSITIFAKKITDLFLDTP 120

Query: 121 QIWFGKKKHFHVSKISISSWNAFRKYDVNIIVHIPGTVQTYIINSDGEQSQLPSVAEASS 180
           QIWFGKKKHFHVSKISISSWNAFRKYDVNIIVHIPGTVQTYIINSDGEQSQLPSVAEASS
Sbjct: 121 QIWFGKKKHFHVSKISISSWNAFRKYDVNIIVHIPGTVQTYIINSDGEQSQLPSVAEASS 180

Query: 181 GRNSQDLNVNMIWAETFMSGIVRDIMIMKDNRADGESQNLVETLIFNPFTSGELEDVANN 240
           GRNSQDLNVNMIWAETFMSGIVRDIMIMKDNRADGESQNLVETLIFNPFTSGELEDVANN
Sbjct: 181 GRNSQDLNVNMIWAETFMSGIVRDIMIMKDNRADGESQNLVETLIFNPFTSGELEDVANN 240

Query: 241 FIKLFPLVYEKGVYLDAPTHVLNPSLTNNYLVETLVEIVRLTKSLEACRKMLKKLIEIHP 300
           FIKLFPLVYEKGVYLDAPTHVLNPSLTNNYLVETLVEIVRLTKSLEACRKMLKKLIEIHP
Sbjct: 241 FIKLFPLVYEKGVYLDAPTHVLNPSLTNNYLVETLVEIVRLTKSLEACRKMLKKLIEIHP 300

Query: 301 EAVIILIRVYFACDLEIDAVDLINEQLNSPSSFLADDSKTSHIQLIFKSELLSIQSEFLL 360
           EAVIILIRVYFACDLEIDAVDLINEQLNSPSSFLADDSKTSHIQLIFKSELLSIQSEFLL
Sbjct: 301 EAVIILIRVYFACDLEIDAVDLINEQLNSPSSFLADDSKTSHIQLIFKSELLSIQSEFLL 360

Query: 361 DVKRDYKLAKEVAMEAVNCAPNEFKTWYLLTRIYIKLNDMSNALLSLNACPMSQVKEKYV 420
           DVKRDYKLAKEVAMEAVNCAPNEFKTWYLLTRIYIKLNDMSNALLSLNACPMSQVKEKYV
Sbjct: 361 DVKRDYKLAKEVAMEAVNCAPNEFKTWYLLTRIYIKLNDMSNALLSLNACPMSQVKEKYV 420

Query: 421 LRRIAPITSDENLHLPLPLDASIEEISSLNPMDVQLEQKSADPNLVNLSASSLKSTFQLA 480
           LRRIAPITSDENLHLPLPLDASIEEISSLNPMDVQLEQKSADPNLVNLSASSLKSTFQLA
Sbjct: 421 LRRIAPITSDENLHLPLPLDASIEEISSLNPMDVQLEQKSADPNLVNLSASSLKSTFQLA 480

Query: 481 YKLLTEIVQITGWEQLLKYRSKIFVMEDEYQGSTSSIDEAEVRGNDISKMRSKRLCERWL 540
           YKLLTEIVQITGWEQLLKYRSKIFVMEDEYQGSTSSIDEAEVRGNDISKMRSKRLCERWL
Sbjct: 481 YKLLTEIVQITGWEQLLKYRSKIFVMEDEYQGSTSSIDEAEVRGNDISKMRSKRLCERWL 540

Query: 541 DNLFMLLYEDLKTYTDWQSEQLYFDAQNSKYHKLTVEWELFGLCAKRLGHLPEAAKAFQI 600
           DNLFMLLYEDLKTYTDWQSEQLYFDAQNSKYHKLTVEWELFGLCAKRLGHLPEAAKAFQI
Sbjct: 541 DNLFMLLYEDLKTYTDWQSEQLYFDAQNSKYHKLTVEWELFGLCAKRLGHLPEAAKAFQI 600

Query: 601 GLSQRFSPVCAKNLLQFYIDEHKRIRRDSVSANSELTSSQILSSINDIDSSIIDLVVKIC 660
           GLSQRFSPVCAKNLLQFYIDEHKRIRRDSVSANSELTSSQILSSINDIDSSIIDLVVKIC
Sbjct: 601 GLSQRFSPVCAKNLLQFYIDEHKRIRRDSVSANSELTSSQILSSINDIDSSIIDLVVKIC 660

Query: 661 CWNHRWYIEFSIILIDALSVAVQDMGITKVHNEIASRFSDPVAQLIDDNILNFLKNFTND 720
           CWNHRWYIEFSIILIDALSVAVQDMGITKVHNEIASRFSDPVAQLIDDNILNFLKNFTND
Sbjct: 661 CWNHRWYIEFSIILIDALSVAVQDMGITKVHNEIASRFSDPVAQLIDDNILNFLKNFTND 720

Query: 721 TFDN 724
           TFDN
Sbjct: 721 TFDN 724


>4YG8-B nrPDB
          Length = 754

 Score =  807 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 187/785 (23%), Positives = 307/785 (39%), Gaps = 178/785 (22%)

Query: 6   SIPEVKEDVIGYALHQRRARVGQFQDLGPPDLITLIKSLPSSSSTTTATASANDNGATSN 65
           S P + E   G  LH R                 LIK L SS +                
Sbjct: 42  SCPRIMERQFGECLHNRTH---------------LIKDLISSGNV--------------- 71

Query: 66  INGQDPTTIVTELHSHDKLKGQIGTFFYCMGIDTSDPTSITIFAKKITDLFLDTPQIWFG 125
             G  P  IV   + +   K + G +FY  GI+ S P     F + +             
Sbjct: 72  --GLGPIEIVHMSYLNKHEKEEFGEYFYVTGIEVSGPAMPVEFLEVLKS----------S 119

Query: 126 KKKHFHVSK---ISISSWNAFRKYDVNIIVHIPGTVQTYIINSDGEQSQLPSVAEASSGR 182
           K+   ++S    ++   +N F   D+ I      T QT  I+ + E + L    +     
Sbjct: 120 KRISKNISNNIILTYCCFNFFSNLDIRIRYDADDTFQTTAIDCNKETTDLTMTEK----- 174

Query: 183 NSQDLNVNMIWAETFMSGIVRDIMIMKDNRADGESQNLVETLIFNPFTSGE-----LEDV 237
                    +W ETF S ++R   I+ +   + +   LVE     PF  G+      + +
Sbjct: 175 ---------MWEETFASSVIR--AIITNTNPELKPPGLVEC----PFYVGKDTISSCKKI 219

Query: 238 ANNFIKLFPLVYEKGVYLDAPTHVLNPSLTNNYLVETLVEIVRLTKSL-----EACRKML 292
                +  P     G      T  +  ++ NNYL+ +L   + +T SL     +  + + 
Sbjct: 220 IELLCRFLPRSLNCGW---DSTKSMQATIVNNYLMYSLKSFIAITPSLVDFTIDYLKGLT 276

Query: 293 KK--LIEIHPEAVIILIRVYFACDLEIDAVDLINEQLNSPSSFLAD----DSKTSHIQLI 346
           KK  + +I+ +  +I I  +     E+D + ++NE L+   S L D    D+ ++ +   
Sbjct: 277 KKDPIHDIYYKTAMITILDHIETK-ELDMITILNETLDPLLSLLNDLPPRDADSARLMNC 335

Query: 347 FKSELLSIQSEFLLD---------------------VKRDYKLAK--------EVAMEAV 377
             S+LL+IQ+ FLL+                      +  Y LA+        E A+ A+
Sbjct: 336 M-SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAI 394

Query: 378 NCAP------NEFKTWY--LLTRIYIK--LN-----------DMSNALLSLNACPMSQVK 416
           N  P         +T Y   LT  Y K  LN           + +N   +L      ++K
Sbjct: 395 NSMPRLRKNDGHLETMYSRFLTSNYYKKPLNGTREHYDLTAMEFTNLSGTLRNWKEDELK 454

Query: 417 EKYVLRRIAPITSD---------ENLHLPLPLDASIEEISSLNPMDVQLEQKSADPNLV- 466
            + +  RIA I            +++ + L      + ++ +N +  Q  +   + NL+ 
Sbjct: 455 RQ-IFGRIAMINEKKIGYTKEIWDDIAIKLGPICGPQSVNLINYVSPQEVKNIKNINLIA 513

Query: 467 -NLSASSLKSTFQLAYKLLTEIVQITGWEQLLKYRSKIFVMEDE-YQGSTSSIDEAEVRG 524
            N     L       Y LL EIV   GW  LL  R++ F+ME E YQ S + IDE    G
Sbjct: 514 RNTIGKQLGWFSGKIYGLLMEIVNKIGWNGLLNIRTEAFMMETEFYQASNNIIDE---NG 570

Query: 525 NDISKMRSKRLCERWLDNLFMLLYEDLKTYTDWQSEQLYFDAQNSKYHKLTVEWELFGLC 584
           +   + R KR CE WLD+LF+ LY+DLK        ++    ++ K+  L  EWEL GL 
Sbjct: 571 HIPMESRKKRFCEGWLDDLFLDLYQDLKL------SKISLSNKDEKHSGL--EWELLGLI 622

Query: 585 AKRLGHLPEAAKAFQIGLSQRFSPVCAKNLLQFYIDEHKRIRRDSVSANSELTSSQILSS 644
             R  H  +A    +  +  RF PV  + LL+ Y+   K I+                 +
Sbjct: 623 MLRTWHWEDAVACLRTSIVARFDPVSCQQLLKIYLQPPKNIQE---------------VT 667

Query: 645 INDIDSSIIDLVVKICCWNHRWYIEFSIILIDALSVAVQDMGITKVHNEI--ASRFSDPV 702
           + D D +II L++K   ++ R+Y    I  +  L     ++G   + N+I       D +
Sbjct: 668 LLDTD-TIISLLIKKISYDCRYYNYCQIFNLQLLEKLCNELGTHILRNKILLQPSIGDEI 726

Query: 703 AQLID 707
             +ID
Sbjct: 727 MVMID 731


>3UA4-A nrPDB
          Length = 745

 Score = 29.7 bits (65), Expect = 4.5,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 79/217 (36%), Gaps = 29/217 (13%)

Query: 9   EVKEDVIGYALHQRRARVGQFQDLGPPDLITLIKSLPSSSSTTTATASANDNGATSNING 68
           ++K DV G A+      VG  +DLG     T++  L         T         +N   
Sbjct: 386 QIKYDVYGEAV------VGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFR 439

Query: 69  QDPTTIVTELHSHDKLKGQIGTFFY---------CMGIDTSDPTSITIFAKKITDLFLDT 119
           Q   ++  +L+  +K    I T  Y            I++   +   I      D   + 
Sbjct: 440 QGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGI----AKDRGFEQ 495

Query: 120 PQIWFGKKK-HFHVSKISISSWNAFRKYDVNIIVHIPGTVQTYI-------INSDGEQSQ 171
           P I   +    F  +++S    +    +     + IP    +Y+       I+   +   
Sbjct: 496 PDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISIPQKYTSYVKPIMSTHIHQTIKAQS 555

Query: 172 LPSVAEA--SSGRNSQDLNVNMIWAETFMSGIVRDIM 206
           +P ++ A  S GR   +L+ + +W + +  G VR+ M
Sbjct: 556 IPYLSRAIPSHGRGEPELDEDEMWIQKYPQGHVRNNM 592


>4E11-A nrPDB
          Length = 303

 Score = 29.3 bits (64), Expect = 5.9,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 18/150 (12%)

Query: 365 DYKLAKEVAMEAVNCAPNEFKTWYLLTRIYIKLNDMSNALLSLNACPMSQVKEKYVLRRI 424
           DY L  +V +E +      F  W        K++ ++ A  S  A     +  + ++R  
Sbjct: 119 DYNLCPQVTLEQLMTQFTHFLNWIFDYTEMTKVSSLTFAGHSAGA----HLLAQILMRPN 174

Query: 425 APITSDENLHLPLPLDASIEEISSLNPMDVQLEQKSADPNLVNLSASSLKSTFQLAYKLL 484
                   +   L     + ++  L+ ++    +     N  N+ + S          +L
Sbjct: 175 VITAQRSKMVWALIFLCGVYDLRELSNLESVNPKNILGLNERNIESVS---------PML 225

Query: 485 TEIVQITGWEQLLKYRSKIFVMEDEYQGST 514
            E   +T W       +KI+V+  E+  +T
Sbjct: 226 WEYTDVTVWNS-----TKIYVVAAEHDSTT 250


>3QDE-A nrPDB
          Length = 811

 Score = 29.3 bits (64), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 548 YEDLKTYTDWQSEQLYFDAQNSKYHKLTVEWELFGLCAKRLGHLPEAAKAFQIGLSQRFS 607
           +E+LK+Y +    + + ++ + K +++   W  +  C     ++  +A  F+ G+ +   
Sbjct: 301 FEELKSYWNALLSKYFLESHDEKLNRMVNIWNQYQ-CMV-TFNMSRSASYFESGIGRGMG 358

Query: 608 -PVCAKNLLQFYIDEHKRIRR 627
                ++LL F     +R R 
Sbjct: 359 FRDSNQDLLGFVHQIPERARE 379


>3ZN3-A nrPDB
          Length = 291

 Score = 29.0 bits (63), Expect = 7.1,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 361 DVKRDYKLAKEVAMEAVNCAPNEFKTWYLLTRIYIKLNDMSNALLSLNACPMSQ 414
           +   D  +A E  +E       E K  YLL + Y    +   A  +L  C  S+
Sbjct: 53  EFDLDPDMANEKLLEV------EEKNIYLLAKSYFDCKEFERAAYTLQNCKSSK 100


>4UP8-A nrPDB
          Length = 777

 Score = 29.0 bits (63), Expect = 8.6,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 57/166 (34%), Gaps = 23/166 (13%)

Query: 202 VRDIMIMKDNRADGES-QNLVETLIFNPFTSGELEDVANNFIKLFPLVYEKGVYLDAPTH 260
           ++D ++  +N  D +  +   +  I  PF S E   V            E   Y D    
Sbjct: 310 IKDRLMDINNEEDIKMLEKFFKEPIPRPFNSAECSKVIEKHCT------ELNYYYDGNNE 363

Query: 261 VLNPSLTNNYLVET--LVEIVRLTKSLEACRKMLKKLIEIHPEAVIILIRVYFACDLEID 318
                L  +++ E   +++     K +     + +K  E  P  +              +
Sbjct: 364 KAMKKLFADFVTEKKMVLDFTAPFKRISYVHALEEKFGEKIPRPL-----------DGPE 412

Query: 319 AVDLINEQLNSPSSFLADDSKTSHIQLIFKSELLS---IQSEFLLD 361
           A+  + +Q    ++  A+   T+ +      +L+    +Q  F+ D
Sbjct: 413 ALTFLKKQAIRFNAICAEPQTTARVMDKLFGDLIEVDLVQPTFVCD 458


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.315    0.127    0.333 

Lambda     K      H
   0.267   0.0388    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,606,118
Number of Sequences: 36641
Number of extensions: 894940
Number of successful extensions: 2379
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2337
Number of HSP's gapped (non-prelim): 30
length of query: 724
length of database: 10,336,785
effective HSP length: 104
effective length of query: 620
effective length of database: 6,526,121
effective search space: 4046195020
effective search space used: 4046195020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (29.0 bits)