BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q04868 (273 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 4EJS-C nrPDB 552 e-158 5GUP-b nrPDB 32 0.30 5LNK-r nrPDB 30 0.90 3DEF-A nrPDB 30 0.90 4IJB-A nrPDB 30 1.2 3TCQ-A nrPDB 30 1.6 5U1D-A nrPDB 29 2.5 2C3Z-A nrPDB 28 3.4 5IV8-A nrPDB 28 4.4 5AOU-A nrPDB 28 5.6 5IV9-A nrPDB 28 6.0 4PA8-A nrPDB 28 6.1 >4EJS-C nrPDB Length = 277 Score = 552 bits (1422), Expect = e-158, Method: Compositional matrix adjust. Identities = 273/273 (100%), Positives = 273/273 (100%) Query: 1 MGSVQRQDLVLFSDQSVLPAHFFQDSNSHNLFFITHQSCTQPLWMINALVETHVLGSPSS 60 MGSVQRQDLVLFSDQSVLPAHFFQDSNSHNLFFITHQSCTQPLWMINALVETHVLGSPSS Sbjct: 5 MGSVQRQDLVLFSDQSVLPAHFFQDSNSHNLFFITHQSCTQPLWMINALVETHVLGSPSS 64 Query: 61 LNESSSSMLPSSTRSHAVLASFIHEQNYFTNSLNKLKIPSNNYNVLDFLSDFIVNNIHNK 120 LNESSSSMLPSSTRSHAVLASFIHEQNYFTNSLNKLKIPSNNYNVLDFLSDFIVNNIHNK Sbjct: 65 LNESSSSMLPSSTRSHAVLASFIHEQNYFTNSLNKLKIPSNNYNVLDFLSDFIVNNIHNK 124 Query: 121 PRDKILSDVLAKFSAAIQNNPTDTIVIIEQPELLLSLVSGLTCSELNNKFITPLLRQCKV 180 PRDKILSDVLAKFSAAIQNNPTDTIVIIEQPELLLSLVSGLTCSELNNKFITPLLRQCKV Sbjct: 125 PRDKILSDVLAKFSAAIQNNPTDTIVIIEQPELLLSLVSGLTCSELNNKFITPLLRQCKV 184 Query: 181 LIIVSNSDIFNIDEYDASVHSSNLQNFYKSSFIKSMINLNLNPLKTGFAKDVTGSLHVCR 240 LIIVSNSDIFNIDEYDASVHSSNLQNFYKSSFIKSMINLNLNPLKTGFAKDVTGSLHVCR Sbjct: 185 LIIVSNSDIFNIDEYDASVHSSNLQNFYKSSFIKSMINLNLNPLKTGFAKDVTGSLHVCR 244 Query: 241 GGAPIATSNTSLHVVENEYLYLNEKESTKLFYR 273 GGAPIATSNTSLHVVENEYLYLNEKESTKLFYR Sbjct: 245 GGAPIATSNTSLHVVENEYLYLNEKESTKLFYR 277 >5GUP-b nrPDB Length = 128 Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust. Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%) Query: 26 SNSHNLFFITHQSCTQPLWMINALVETHVLGSPSSLNESSSSMLPSST 73 + H++F +TH P+W+I+ ++ HV P ++ E + P T Sbjct: 64 TYRHSIFAVTH--VLIPVWIIHYYLKYHVTAKPYTVVERKPRIFPGDT 109 >5LNK-r nrPDB Length = 127 Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust. Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Query: 26 SNSHNLFFITHQSCTQPLWMINALVETHVLGSPSSLNESSSSMLPSST 73 + H++F TH P+W+I+ ++ HV P ++ E + P T Sbjct: 63 TYRHSIFAFTH--VLIPVWIIHYYLKYHVTTKPYTIVEKKPRIFPGDT 108 >3DEF-A nrPDB Length = 262 Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 144 TIVIIEQPELLLSLVSGLTCSELNNKFITPLLRQCKVLIIVSNSDIFNIDEYDASVHSSN 203 TI II+ P L+ + EL F+ R VL+ V D++ +DE D V + Sbjct: 85 TINIIDTPGLVEAGYVNHQALELIKGFLVN--RTIDVLLYVDRLDVYAVDELDKQVVIAI 142 Query: 204 LQNFYKSSFIKSMINL 219 Q F K + K+++ L Sbjct: 143 TQTFGKEIWCKTLLVL 158 >4IJB-A nrPDB Length = 256 Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 46 INALVETHVLGSPSSLN-ESSSSMLPSSTRSHAVLASFIHEQNYFTNSLNKLKIPSNNYN 104 I A++ ++ SPS L+ E +AV S + E+ YF S L+ +++ + Sbjct: 45 ITAIIALYMRKSPSGLDVERDPIEYAKFMERYAVGLSIVTEEKYFNGSYETLRKIASSVS 104 Query: 105 VLDFLSDFIVN 115 + ++DFIV Sbjct: 105 IPILMNDFIVK 115 >3TCQ-A nrPDB Length = 326 Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 23/36 (63%) Query: 140 NPTDTIVIIEQPELLLSLVSGLTCSELNNKFITPLL 175 +P +I+ IE PELL+ ++G S+ N + I P+L Sbjct: 253 DPAKSIIGIEVPELLVHKLTGKKMSQKNGQPIIPVL 288 >5U1D-A nrPDB Length = 748 Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 89 FTNSLNKLKIPSNNYNVLDFLSDFIVNN----IHNKPRDKILSDVLAKFSAAIQNNPTDT 144 FT +L + I + VL+F+ D I NN +H+ + ++ VL + + Q N T Sbjct: 224 FTRNLTLMSILTIASAVLEFVGDGIYNNTMGHVHSHLQGEVFGAVLRQETEFFQQNQTGN 283 Query: 145 IV 146 I+ Sbjct: 284 IM 285 >2C3Z-A nrPDB Length = 222 Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 46 INALVETHVLGSPSSLNESSSSMLPSS-TRSHAVLASFIHEQNYFTNSLNKLKIPSNNYN 104 I A++ + SPS L+ + S +AV S + E+ YF S L+ +++ + Sbjct: 19 ITAIIAEYKRKSPSGLDVERDPIEYSKFMERYAVGLSILTEEKYFNGSYETLRKIASSVS 78 Query: 105 VLDFLSDFIV 114 + + DFIV Sbjct: 79 IPILMKDFIV 88 >5IV8-A nrPDB Length = 601 Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 76/183 (41%), Gaps = 27/183 (14%) Query: 25 DSNSHN-LFFITHQSCTQPLWMINALVETHVLGSPSSLNESSSSMLPSSTRSHAVL---A 80 DSNS LF+ H +W +NA + + P N+ SS SST +A A Sbjct: 124 DSNSRRWLFYWNHSGVIDQVWRLNA--DYTKVSDPDYFNDFSSK-YGSSTDGYATQKFSA 180 Query: 81 SFIHEQNYFTNSLNKLKI----PSNNYNVLDFLS-DFIVNNIHNKPRDKILSDVLAKFSA 135 ++++ T S + ++ SN+Y+ L ++ N++ P D L +A F Sbjct: 181 GYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDV--GPFDTHLYGQVAHFVN 238 Query: 136 AIQNNPTDTIVIIEQPELLLSLVSGLTCSELNNKFITPLLRQCKVLIIVSNSDIFNIDEY 195 + N P T V E P + L L +G K + +Q N+D+Y Sbjct: 239 SNNNMPEATRVHFE-PTINLPLSNGWGSLNTEAKLLATHYQQS------------NLDKY 285 Query: 196 DAS 198 +A+ Sbjct: 286 NAA 288 >5AOU-A nrPDB Length = 258 Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Query: 46 INALVETHVLGSPSSLN-ESSSSMLPSSTRSHAVLASFIHEQNYFTNSLNKLKIPSNNYN 104 I A++ ++ SPS L+ E +AV S E+ YF S L+ +++ + Sbjct: 45 ITAIIAYYLRKSPSGLDVERDPIEYAKYMEPYAVGLSIKTEEKYFDGSYEMLRKIASSVS 104 Query: 105 VLDFLSDFIVNN 116 + ++DFIV Sbjct: 105 IPILMNDFIVKE 116 >5IV9-A nrPDB Length = 758 Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 89/217 (41%), Gaps = 33/217 (15%) Query: 25 DSNSHN-LFFITHQSCTQPLWMINALVETHVLGSPSSLNESSSSMLPSSTRSHAVL---A 80 DSNS LF+ H +W +NA + + P N+ SS SST +A A Sbjct: 281 DSNSRRWLFYWNHSGVIDQVWRLNA--DYTKVSDPDYFNDFSSK-YGSSTDGYATQKFSA 337 Query: 81 SFIHEQNYFTNSLNKLKI----PSNNYNVLDFLS-DFIVNNIHNKPRDKILSDVLAKFSA 135 ++++ T S + ++ SN+Y+ L ++ N++ P D L +A F Sbjct: 338 GYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDV--GPFDTHLYGQVAHFVN 395 Query: 136 AIQNNPTDTIVIIEQPELLLSLVSGLTCSELNNKFITPLLRQCKVLIIVSNSDIFNIDEY 195 + N P T V E P + L L +G K + +Q N+D+Y Sbjct: 396 SNNNMPEATRVHFE-PTINLPLSNGWGSLNTEAKLLATHYQQS------------NLDKY 442 Query: 196 DASVHSSNLQNFYKSSFIKSMINLNLNPLKTGFAKDV 232 +A+ + YK S + M ++ K F +D+ Sbjct: 443 NAANGTD-----YKESVSRVMPQFKVDG-KMVFERDL 473 >4PA8-A nrPDB Length = 258 Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query: 46 INALVETHVLGSPSSLN-ESSSSMLPSSTRSHAVLASFIHEQNYFTNSLNKLKIPSNNYN 104 I A++ ++ SPS L+ E +AV S E+ YF S L+ +++ + Sbjct: 45 ITAIIAYYLRKSPSGLDVERDPIEYAKYMERYAVGLSIKTEEKYFNGSYEMLRKIASSVS 104 Query: 105 VLDFLSDFIVN 115 + ++DFIV Sbjct: 105 IPILMNDFIVK 115 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 4EJS-C nrPDB 535 e-153 Sequences not found previously or not previously below threshold: 5GUP-b nrPDB 31 0.50 4IJB-A nrPDB 30 0.86 3TCQ-A nrPDB 30 0.97 3DEF-A nrPDB 30 1.1 5LNK-r nrPDB 30 1.3 2C3Z-A nrPDB 29 2.8 2IAK-A nrPDB 29 3.0 4PA8-A nrPDB 28 4.3 5U1D-A nrPDB 28 4.5 5AOU-A nrPDB 28 5.8 4LT9-A nrPDB 27 6.7 4OEL-A nrPDB 27 8.9 3PDF-A nrPDB 27 8.9 CONVERGED! >4EJS-C nrPDB Length = 277 Score = 535 bits (1378), Expect = e-153, Method: Composition-based stats. Identities = 273/273 (100%), Positives = 273/273 (100%) Query: 1 MGSVQRQDLVLFSDQSVLPAHFFQDSNSHNLFFITHQSCTQPLWMINALVETHVLGSPSS 60 MGSVQRQDLVLFSDQSVLPAHFFQDSNSHNLFFITHQSCTQPLWMINALVETHVLGSPSS Sbjct: 5 MGSVQRQDLVLFSDQSVLPAHFFQDSNSHNLFFITHQSCTQPLWMINALVETHVLGSPSS 64 Query: 61 LNESSSSMLPSSTRSHAVLASFIHEQNYFTNSLNKLKIPSNNYNVLDFLSDFIVNNIHNK 120 LNESSSSMLPSSTRSHAVLASFIHEQNYFTNSLNKLKIPSNNYNVLDFLSDFIVNNIHNK Sbjct: 65 LNESSSSMLPSSTRSHAVLASFIHEQNYFTNSLNKLKIPSNNYNVLDFLSDFIVNNIHNK 124 Query: 121 PRDKILSDVLAKFSAAIQNNPTDTIVIIEQPELLLSLVSGLTCSELNNKFITPLLRQCKV 180 PRDKILSDVLAKFSAAIQNNPTDTIVIIEQPELLLSLVSGLTCSELNNKFITPLLRQCKV Sbjct: 125 PRDKILSDVLAKFSAAIQNNPTDTIVIIEQPELLLSLVSGLTCSELNNKFITPLLRQCKV 184 Query: 181 LIIVSNSDIFNIDEYDASVHSSNLQNFYKSSFIKSMINLNLNPLKTGFAKDVTGSLHVCR 240 LIIVSNSDIFNIDEYDASVHSSNLQNFYKSSFIKSMINLNLNPLKTGFAKDVTGSLHVCR Sbjct: 185 LIIVSNSDIFNIDEYDASVHSSNLQNFYKSSFIKSMINLNLNPLKTGFAKDVTGSLHVCR 244 Query: 241 GGAPIATSNTSLHVVENEYLYLNEKESTKLFYR 273 GGAPIATSNTSLHVVENEYLYLNEKESTKLFYR Sbjct: 245 GGAPIATSNTSLHVVENEYLYLNEKESTKLFYR 277 >5GUP-b nrPDB Length = 128 Score = 31.2 bits (69), Expect = 0.50, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Query: 29 HNLFFITHQSCTQPLWMINALVETHVLGSPSSLNESSSSMLPSST 73 H++F +TH P+W+I+ ++ HV P ++ E + P T Sbjct: 67 HSIFAVTH--VLIPVWIIHYYLKYHVTAKPYTVVERKPRIFPGDT 109 >4IJB-A nrPDB Length = 256 Score = 30.4 bits (67), Expect = 0.86, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 46 INALVETHVLGSPSSLN-ESSSSMLPSSTRSHAVLASFIHEQNYFTNSLNKLKIPSNNYN 104 I A++ ++ SPS L+ E +AV S + E+ YF S L+ +++ + Sbjct: 45 ITAIIALYMRKSPSGLDVERDPIEYAKFMERYAVGLSIVTEEKYFNGSYETLRKIASSVS 104 Query: 105 VLDFLSDFIV 114 + ++DFIV Sbjct: 105 IPILMNDFIV 114 >3TCQ-A nrPDB Length = 326 Score = 30.1 bits (66), Expect = 0.97, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 23/36 (63%) Query: 140 NPTDTIVIIEQPELLLSLVSGLTCSELNNKFITPLL 175 +P +I+ IE PELL+ ++G S+ N + I P+L Sbjct: 253 DPAKSIIGIEVPELLVHKLTGKKMSQKNGQPIIPVL 288 >3DEF-A nrPDB Length = 262 Score = 30.1 bits (66), Expect = 1.1, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 144 TIVIIEQPELLLSLVSGLTCSELNNKFITPLLRQCKVLIIVSNSDIFNIDEYDASVHSSN 203 TI II+ P L+ + EL F+ R VL+ V D++ +DE D V + Sbjct: 85 TINIIDTPGLVEAGYVNHQALELIKGFLVN--RTIDVLLYVDRLDVYAVDELDKQVVIAI 142 Query: 204 LQNFYKSSFIKSMINL 219 Q F K + K+++ L Sbjct: 143 TQTFGKEIWCKTLLVL 158 >5LNK-r nrPDB Length = 127 Score = 29.7 bits (65), Expect = 1.3, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Query: 29 HNLFFITHQSCTQPLWMINALVETHVLGSPSSLNESSSSMLPSST 73 H++F TH P+W+I+ ++ HV P ++ E + P T Sbjct: 66 HSIFAFTH--VLIPVWIIHYYLKYHVTTKPYTIVEKKPRIFPGDT 108 >2C3Z-A nrPDB Length = 222 Score = 28.5 bits (62), Expect = 2.8, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 46 INALVETHVLGSPSSLNESSSSMLPSS-TRSHAVLASFIHEQNYFTNSLNKLKIPSNNYN 104 I A++ + SPS L+ + S +AV S + E+ YF S L+ +++ + Sbjct: 19 ITAIIAEYKRKSPSGLDVERDPIEYSKFMERYAVGLSILTEEKYFNGSYETLRKIASSVS 78 Query: 105 VLDFLSDFIV 114 + + DFIV Sbjct: 79 IPILMKDFIV 88 >2IAK-A nrPDB Length = 224 Score = 28.5 bits (62), Expect = 3.0, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 23/145 (15%) Query: 148 IEQPELLLSLV-SGLTCSELNNKFITPLLR-----QCKVLIIVSNSDIFN---------- 191 I +P L SL+ LT E+N KF+ LL Q ++ SD+ + Sbjct: 5 IRKPLLKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLENHKN 64 Query: 192 ----IDEYDASVHSSNLQNFYKSSFIKSMINLNLNPLKTGFAKDVTGSLHVCRGGAPIAT 247 I+E+++S+ + + ++ +K L+ L++ +AK + S + R + T Sbjct: 65 VHRAIEEFESSLKEAKISEIQMTAPLKLSYTDKLHRLESQYAKLLNTSRNQERH---LDT 121 Query: 248 SNTSLHVVENEYLYLNEKESTKLFY 272 + + NE ++LNEKE +++ Y Sbjct: 122 LHNFVTRATNELIWLNEKEESEVAY 146 >4PA8-A nrPDB Length = 258 Score = 28.1 bits (61), Expect = 4.3, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 46 INALVETHVLGSPSSLN-ESSSSMLPSSTRSHAVLASFIHEQNYFTNSLNKLKIPSNNYN 104 I A++ ++ SPS L+ E +AV S E+ YF S L+ +++ + Sbjct: 45 ITAIIAYYLRKSPSGLDVERDPIEYAKYMERYAVGLSIKTEEKYFNGSYEMLRKIASSVS 104 Query: 105 VLDFLSDFIV 114 + ++DFIV Sbjct: 105 IPILMNDFIV 114 >5U1D-A nrPDB Length = 748 Score = 28.1 bits (61), Expect = 4.5, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 89 FTNSLNKLKIPSNNYNVLDFLSDFIVNN----IHNKPRDKILSDVLAKFSAAIQNNPTDT 144 FT +L + I + VL+F+ D I NN +H+ + ++ VL + + Q N T Sbjct: 224 FTRNLTLMSILTIASAVLEFVGDGIYNNTMGHVHSHLQGEVFGAVLRQETEFFQQNQTGN 283 Query: 145 IV 146 I+ Sbjct: 284 IM 285 >5AOU-A nrPDB Length = 258 Score = 27.7 bits (60), Expect = 5.8, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 46 INALVETHVLGSPSSLN-ESSSSMLPSSTRSHAVLASFIHEQNYFTNSLNKLKIPSNNYN 104 I A++ ++ SPS L+ E +AV S E+ YF S L+ +++ + Sbjct: 45 ITAIIAYYLRKSPSGLDVERDPIEYAKYMEPYAVGLSIKTEEKYFDGSYEMLRKIASSVS 104 Query: 105 VLDFLSDFIV 114 + ++DFIV Sbjct: 105 IPILMNDFIV 114 >4LT9-A nrPDB Length = 269 Score = 27.4 bits (59), Expect = 6.7, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 46 INALVETHVLGSPSSLN-ESSSSMLPSSTRSHAVLASFIHEQNYFTNSLNKLKIPSNNYN 104 I A++ + SPS L+ E +AV S E+ YF S L+ +++ + Sbjct: 45 ITAIIAYYTRKSPSGLDVERDPIEYAKFMERYAVGLSIKTEEKYFNGSYEMLRKIASSVS 104 Query: 105 VLDFLSDFIV 114 + ++DFIV Sbjct: 105 IPILMNDFIV 114 >4OEL-A nrPDB Length = 370 Score = 27.0 bits (58), Expect = 8.9, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 28/65 (43%) Query: 207 FYKSSFIKSMINLNLNPLKTGFAKDVTGSLHVCRGGAPIATSNTSLHVVENEYLYLNEKE 266 F+K S + N TG+ DV G C G + T++ +++V EK Sbjct: 80 FFKYKEEGSKVTTYCNETMTGWVHDVLGRNWACFTGKKVGTASENVYVNTAHLKNSQEKY 139 Query: 267 STKLF 271 S +L+ Sbjct: 140 SNRLY 144 >3PDF-A nrPDB Length = 441 Score = 27.0 bits (58), Expect = 8.9, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 28/65 (43%) Query: 207 FYKSSFIKSMINLNLNPLKTGFAKDVTGSLHVCRGGAPIATSNTSLHVVENEYLYLNEKE 266 F+K S + N TG+ DV G C G + T++ +++V EK Sbjct: 80 FFKYKEEGSKVTTYCNETMTGWVHDVLGRNWACFTGKKVGTASENVYVNTAHLKNSQEKY 139 Query: 267 STKLF 271 S +L+ Sbjct: 140 SNRLY 144 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.318 0.132 0.374 Lambda K H 0.267 0.0422 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,920,262 Number of Sequences: 36641 Number of extensions: 444440 Number of successful extensions: 956 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 25 Number of HSP's that attempted gapping in prelim test: 945 Number of HSP's gapped (non-prelim): 36 length of query: 273 length of database: 10,336,785 effective HSP length: 96 effective length of query: 177 effective length of database: 6,819,249 effective search space: 1207007073 effective search space used: 1207007073 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.9 bits)