BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q04712
         (507 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

5O7X-C nrPDB                                                         1051   0.0  
6AZH-A nrPDB                                                           30   3.6  
1K1Y-A nrPDB                                                           28   9.2  

>5O7X-C nrPDB
          Length = 507

 Score = 1051 bits (2718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/507 (100%), Positives = 507/507 (100%)

Query: 1   MFEVPITLTNRKFAQRRKLKYQYINYISRRFDRISKKSTTTDSLPTPENSAAENNDEEEG 60
           MFEVPITLTNRKFAQRRKLKYQYINYISRRFDRISKKSTTTDSLPTPENSAAENNDEEEG
Sbjct: 1   MFEVPITLTNRKFAQRRKLKYQYINYISRRFDRISKKSTTTDSLPTPENSAAENNDEEEG 60

Query: 61  QNSEAGTYRRSVLQQKKRRRERHWRSVVGEIYSTTESETDSQEEETEEGGEHDTGIDKED 120
           QNSEAGTYRRSVLQQKKRRRERHWRSVVGEIYSTTESETDSQEEETEEGGEHDTGIDKED
Sbjct: 61  QNSEAGTYRRSVLQQKKRRRERHWRSVVGEIYSTTESETDSQEEETEEGGEHDTGIDKED 120

Query: 121 SDEERKFWKKYEKPEKSFEIWRTVSSQNKQPINKQKMTYHNFKKIEKIPLRKMEIPLLHC 180
           SDEERKFWKKYEKPEKSFEIWRTVSSQNKQPINKQKMTYHNFKKIEKIPLRKMEIPLLHC
Sbjct: 121 SDEERKFWKKYEKPEKSFEIWRTVSSQNKQPINKQKMTYHNFKKIEKIPLRKMEIPLLHC 180

Query: 181 TKENKLYFQSISRGLEPLKTSTSEVRNYRTRHIVTLTDLLHLNVSRHNWSLAYKIFATLI 240
           TKENKLYFQSISRGLEPLKTSTSEVRNYRTRHIVTLTDLLHLNVSRHNWSLAYKIFATLI
Sbjct: 181 TKENKLYFQSISRGLEPLKTSTSEVRNYRTRHIVTLTDLLHLNVSRHNWSLAYKIFATLI 240

Query: 241 RIPGVQIKSLWGIGVEILDNLSNSSSGLDFLQWMCQIYSSKSRFVQNINYRSIVPPFQTG 300
           RIPGVQIKSLWGIGVEILDNLSNSSSGLDFLQWMCQIYSSKSRFVQNINYRSIVPPFQTG
Sbjct: 241 RIPGVQIKSLWGIGVEILDNLSNSSSGLDFLQWMCQIYSSKSRFVQNINYRSIVPPFQTG 300

Query: 301 SRTHTAKFAITYLWSSLINCQKSMEPSSNIIDKPFDTENDLLQELIDKISEWVLTPPFME 360
           SRTHTAKFAITYLWSSLINCQKSMEPSSNIIDKPFDTENDLLQELIDKISEWVLTPPFME
Sbjct: 301 SRTHTAKFAITYLWSSLINCQKSMEPSSNIIDKPFDTENDLLQELIDKISEWVLTPPFME 360

Query: 361 DAEVWFIYASCHLLKADTLSRQFVNDNKNNDLIGLDRDIKINQVIKHIHYVRTFLKICLD 420
           DAEVWFIYASCHLLKADTLSRQFVNDNKNNDLIGLDRDIKINQVIKHIHYVRTFLKICLD
Sbjct: 361 DAEVWFIYASCHLLKADTLSRQFVNDNKNNDLIGLDRDIKINQVIKHIHYVRTFLKICLD 420

Query: 421 KGGFAVPSRLIENQLKSFESRLYGEAQDIQERDVANVYDSIDNSSVENSFGDVYETNAEF 480
           KGGFAVPSRLIENQLKSFESRLYGEAQDIQERDVANVYDSIDNSSVENSFGDVYETNAEF
Sbjct: 421 KGGFAVPSRLIENQLKSFESRLYGEAQDIQERDVANVYDSIDNSSVENSFGDVYETNAEF 480

Query: 481 LDTQLMDLSPEDNGLDEMHYSDEDSSE 507
           LDTQLMDLSPEDNGLDEMHYSDEDSSE
Sbjct: 481 LDTQLMDLSPEDNGLDEMHYSDEDSSE 507


>6AZH-A nrPDB
          Length = 192

 Score = 29.6 bits (65), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 25/115 (21%)

Query: 136 KSFEIWRT----VSSQNKQPINKQKMTYHNFKKIEKIPLRKMEIPLLHCTKENKLYFQSI 191
           K  EIW      + +   +PI K K             L KM+  LL+   EN+ +F+ +
Sbjct: 60  KGLEIWHEKLTDIENLEDEPIEKLK------------KLFKMQFELLY---ENRAFFKMV 104

Query: 192 SRGLEPLKTSTSEVRNYRTRHIVTLTDLLHLNVSRHNWS------LAYKIFATLI 240
              L   +T   E+RN  T +I  +  +L   +S+          LA+ +F +LI
Sbjct: 105 MSQLWGKETRQDELRNKITEYIEGIERILKEAISKKQIRECDISLLAHSLFGSLI 159


>1K1Y-A nrPDB
          Length = 659

 Score = 28.1 bits (61), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 313 LWSSLINCQKSMEPSSNIIDKPFDTENDLLQE 344
           +W ++I  Q+ ++P + I+D  FD   +++ E
Sbjct: 373 VWENIIKAQRYLKPENKILDVDFDGRAEIMVE 404


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

5O7X-C nrPDB                                                         1077   0.0  

Sequences not found previously or not previously below threshold:

6GMH-U nrPDB                                                           37   0.018
6AZH-A nrPDB                                                           33   0.28 
3JCM-G nrPDB                                                           32   0.71 
5A5T-C nrPDB                                                           32   0.79 
6HIX-Ag nrPDB                                                          31   1.2  
6C95-D nrPDB                                                           29   3.6  


CONVERGED!
>5O7X-C nrPDB
          Length = 507

 Score = 1077 bits (2785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 507/507 (100%), Positives = 507/507 (100%)

Query: 1   MFEVPITLTNRKFAQRRKLKYQYINYISRRFDRISKKSTTTDSLPTPENSAAENNDEEEG 60
           MFEVPITLTNRKFAQRRKLKYQYINYISRRFDRISKKSTTTDSLPTPENSAAENNDEEEG
Sbjct: 1   MFEVPITLTNRKFAQRRKLKYQYINYISRRFDRISKKSTTTDSLPTPENSAAENNDEEEG 60

Query: 61  QNSEAGTYRRSVLQQKKRRRERHWRSVVGEIYSTTESETDSQEEETEEGGEHDTGIDKED 120
           QNSEAGTYRRSVLQQKKRRRERHWRSVVGEIYSTTESETDSQEEETEEGGEHDTGIDKED
Sbjct: 61  QNSEAGTYRRSVLQQKKRRRERHWRSVVGEIYSTTESETDSQEEETEEGGEHDTGIDKED 120

Query: 121 SDEERKFWKKYEKPEKSFEIWRTVSSQNKQPINKQKMTYHNFKKIEKIPLRKMEIPLLHC 180
           SDEERKFWKKYEKPEKSFEIWRTVSSQNKQPINKQKMTYHNFKKIEKIPLRKMEIPLLHC
Sbjct: 121 SDEERKFWKKYEKPEKSFEIWRTVSSQNKQPINKQKMTYHNFKKIEKIPLRKMEIPLLHC 180

Query: 181 TKENKLYFQSISRGLEPLKTSTSEVRNYRTRHIVTLTDLLHLNVSRHNWSLAYKIFATLI 240
           TKENKLYFQSISRGLEPLKTSTSEVRNYRTRHIVTLTDLLHLNVSRHNWSLAYKIFATLI
Sbjct: 181 TKENKLYFQSISRGLEPLKTSTSEVRNYRTRHIVTLTDLLHLNVSRHNWSLAYKIFATLI 240

Query: 241 RIPGVQIKSLWGIGVEILDNLSNSSSGLDFLQWMCQIYSSKSRFVQNINYRSIVPPFQTG 300
           RIPGVQIKSLWGIGVEILDNLSNSSSGLDFLQWMCQIYSSKSRFVQNINYRSIVPPFQTG
Sbjct: 241 RIPGVQIKSLWGIGVEILDNLSNSSSGLDFLQWMCQIYSSKSRFVQNINYRSIVPPFQTG 300

Query: 301 SRTHTAKFAITYLWSSLINCQKSMEPSSNIIDKPFDTENDLLQELIDKISEWVLTPPFME 360
           SRTHTAKFAITYLWSSLINCQKSMEPSSNIIDKPFDTENDLLQELIDKISEWVLTPPFME
Sbjct: 301 SRTHTAKFAITYLWSSLINCQKSMEPSSNIIDKPFDTENDLLQELIDKISEWVLTPPFME 360

Query: 361 DAEVWFIYASCHLLKADTLSRQFVNDNKNNDLIGLDRDIKINQVIKHIHYVRTFLKICLD 420
           DAEVWFIYASCHLLKADTLSRQFVNDNKNNDLIGLDRDIKINQVIKHIHYVRTFLKICLD
Sbjct: 361 DAEVWFIYASCHLLKADTLSRQFVNDNKNNDLIGLDRDIKINQVIKHIHYVRTFLKICLD 420

Query: 421 KGGFAVPSRLIENQLKSFESRLYGEAQDIQERDVANVYDSIDNSSVENSFGDVYETNAEF 480
           KGGFAVPSRLIENQLKSFESRLYGEAQDIQERDVANVYDSIDNSSVENSFGDVYETNAEF
Sbjct: 421 KGGFAVPSRLIENQLKSFESRLYGEAQDIQERDVANVYDSIDNSSVENSFGDVYETNAEF 480

Query: 481 LDTQLMDLSPEDNGLDEMHYSDEDSSE 507
           LDTQLMDLSPEDNGLDEMHYSDEDSSE
Sbjct: 481 LDTQLMDLSPEDNGLDEMHYSDEDSSE 507


>6GMH-U nrPDB
          Length = 776

 Score = 37.0 bits (84), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 35  SKKSTTTDSLPTP----ENSAAENNDEEEGQNSEAGTYRRSVL-QQKKRRRERHWRSVVG 89
           S++S   D+ P+       S A N+DE+EG  S+ G++       +K    +  W     
Sbjct: 201 SERSDHEDNDPSDVDQHSGSEAPNDDEDEGHRSDGGSHHSEAEGSEKAHSDDEKWGREDK 260

Query: 90  EIYSTTESETDSQEEETEEGGEHDTGIDKEDSDEERKFWKKYEKPEKSFEIWRTVSSQNK 149
              S  E   +S +EE  +G + D  +   D DE+ +     E+P+ S +  + +S + K
Sbjct: 261 SDQSDDEKIQNSDDEERAQGSDEDK-LQNSDDDEKMQNTDDEERPQLSDDERQQLSEEEK 319


>6AZH-A nrPDB
          Length = 192

 Score = 33.1 bits (74), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 25/115 (21%)

Query: 136 KSFEIWRT----VSSQNKQPINKQKMTYHNFKKIEKIPLRKMEIPLLHCTKENKLYFQSI 191
           K  EIW      + +   +PI K K  +            KM+  LL+   EN+ +F+ +
Sbjct: 60  KGLEIWHEKLTDIENLEDEPIEKLKKLF------------KMQFELLY---ENRAFFKMV 104

Query: 192 SRGLEPLKTSTSEVRNYRTRHIVTLTDLLHLNVSRHNWS------LAYKIFATLI 240
              L   +T   E+RN  T +I  +  +L   +S+          LA+ +F +LI
Sbjct: 105 MSQLWGKETRQDELRNKITEYIEGIERILKEAISKKQIRECDISLLAHSLFGSLI 159


>3JCM-G nrPDB
          Length = 899

 Score = 32.0 bits (71), Expect = 0.71,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 25/90 (27%)

Query: 420 DKGGFAVPSRLIENQLKSFESRLYGEAQDIQERDVANVY--------------------- 458
           D  G  +P R  EN      + L  + +D ++ + ANV+                     
Sbjct: 37  DDKGRRIPKRYREN----LNNHLQSQPKDDEDDEAANVFKTLELKLAQKKKKRANEKDDD 92

Query: 459 DSIDNSSVENSFGDVYETNAEFLDTQLMDL 488
           +S+D+S+V+  F D+ E+ A   +++ MD+
Sbjct: 93  NSVDSSNVKRQFADLKESLAAVTESEWMDI 122


>5A5T-C nrPDB
          Length = 843

 Score = 31.6 bits (70), Expect = 0.79,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 71  SVLQQKKRRRERHWRSVVGEIYSTTESETDSQEEETEEGGEHDTGIDKEDSDEE 124
           S L+QK R+  R + S +       E   D   E+ EE  E   G   ED DE+
Sbjct: 69  STLRQKIRKYNRDFESHITNYKQNPEQSADEDAEKNEEDSE---GSSDEDEDED 119


>6HIX-Ag nrPDB
          Length = 260

 Score = 31.2 bits (69), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 55  NDEEEGQNSEAGTYRRSVLQQKKRRRERHWRSVVGEIYSTTESETDSQEEETEEGGEHDT 114
           N E E + +EA  +RR +        E+ W   VG+ YS   ++   +E+E +      T
Sbjct: 119 NYETERRRTEAPQWRRKL-------SEKEWDYYVGQ-YS---AQMKQEEDEIQRRVADRT 167

Query: 115 GIDKEDSDEERKFWKKYEKPEKSFEIWRTVSSQNKQ 150
            + ++ + E ++ WK++  P    ++   +S   +Q
Sbjct: 168 CVQEQSTREVQERWKRHVVPRMQTDLEFNLSHFKRQ 203


>6C95-D nrPDB
          Length = 129

 Score = 29.3 bits (64), Expect = 3.6,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 78  RRRERHWRSVVGEIYSTTESETDSQEEETEEGGEHDTGIDKEDSDEERKFWKKYEKPEKS 137
           RRR     +  G++    E+ET   E   E+  +HD+G     +D ER      EK  +S
Sbjct: 2   RRRGEIDMATEGDVELELETETSGPERPPEKPRKHDSGA----ADLERVTDYAEEKEIQS 57

Query: 138 FEIWRTVSSQNKQPINKQKMTYHNFKKIEKIPLRKMEIPLLHCTKE 183
             +   +S    +   +QK      K++ K+ ++K ++ L+    E
Sbjct: 58  SNLETAMSVIGDRRSREQKAKQEREKELAKVTIKKEDLELIMTEME 103


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.315    0.131    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,287,597
Number of Sequences: 36641
Number of extensions: 845866
Number of successful extensions: 2637
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 2515
Number of HSP's gapped (non-prelim): 123
length of query: 507
length of database: 10,336,785
effective HSP length: 101
effective length of query: 406
effective length of database: 6,636,044
effective search space: 2694233864
effective search space used: 2694233864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)