BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q04437
         (629 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

5Y58-B nrPDB                                                         1289   0.0  
6ERG-A nrPDB                                                           38   0.015
1JEY-A nrPDB                                                           38   0.015
6ERF-B nrPDB                                                           37   0.021
5Y58-A nrPDB                                                           32   1.2  
1C7G-A nrPDB                                                           32   1.2  
1PKK-A nrPDB                                                           31   2.0  
3U48-A nrPDB                                                           29   4.8  
2XKR-A nrPDB                                                           29   5.0  
5GW5-q nrPDB                                                           29   5.8  
5FG0-A nrPDB                                                           29   5.8  
3P09-A nrPDB                                                           29   7.2  

>5Y58-B nrPDB
          Length = 628

 Score = 1289 bits (3335), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 628/628 (100%), Positives = 628/628 (100%)

Query: 2   SSESTTFIVDVSPSMMKNNNVSKSMAYLEYTLLNKSKKSRKTDWISCYLANCPVSENSQE 61
           SSESTTFIVDVSPSMMKNNNVSKSMAYLEYTLLNKSKKSRKTDWISCYLANCPVSENSQE
Sbjct: 1   SSESTTFIVDVSPSMMKNNNVSKSMAYLEYTLLNKSKKSRKTDWISCYLANCPVSENSQE 60

Query: 62  IPNVFQIQSFLAPVTTTATIGFIKRLKQYCDQHSHDSSNEGLQSMIQCLLVVSLDIKQQF 121
           IPNVFQIQSFLAPVTTTATIGFIKRLKQYCDQHSHDSSNEGLQSMIQCLLVVSLDIKQQF
Sbjct: 61  IPNVFQIQSFLAPVTTTATIGFIKRLKQYCDQHSHDSSNEGLQSMIQCLLVVSLDIKQQF 120

Query: 122 QARKILKQIVVFTDNLDDLDITDEEIDLLTEELSTRIILIDCGKDTQEERKKSNWLKLVE 181
           QARKILKQIVVFTDNLDDLDITDEEIDLLTEELSTRIILIDCGKDTQEERKKSNWLKLVE
Sbjct: 121 QARKILKQIVVFTDNLDDLDITDEEIDLLTEELSTRIILIDCGKDTQEERKKSNWLKLVE 180

Query: 182 AIPNSRIYNMNELLVEITSPATSVVKPVRVFSGELRLGADILSTQTSNPSGSMQDENCLC 241
           AIPNSRIYNMNELLVEITSPATSVVKPVRVFSGELRLGADILSTQTSNPSGSMQDENCLC
Sbjct: 181 AIPNSRIYNMNELLVEITSPATSVVKPVRVFSGELRLGADILSTQTSNPSGSMQDENCLC 240

Query: 242 IKVEAFPATKAVSGLNRKTAVEVEDSQKKERYVGVKSIIEYEIHNEGNKKNVSEDDQSGS 301
           IKVEAFPATKAVSGLNRKTAVEVEDSQKKERYVGVKSIIEYEIHNEGNKKNVSEDDQSGS
Sbjct: 241 IKVEAFPATKAVSGLNRKTAVEVEDSQKKERYVGVKSIIEYEIHNEGNKKNVSEDDQSGS 300

Query: 302 SYIPVTISKDSVTKAYRYGADYVVLPSVLVDQTVYESFPGLDLRGFLNREALPRYFLTSE 361
           SYIPVTISKDSVTKAYRYGADYVVLPSVLVDQTVYESFPGLDLRGFLNREALPRYFLTSE
Sbjct: 301 SYIPVTISKDSVTKAYRYGADYVVLPSVLVDQTVYESFPGLDLRGFLNREALPRYFLTSE 360

Query: 362 SSFITADTRLGCQSDLMAFSALVDVMLENRKIAVARYVSKKDSEVNMCALCPVLIEHSNI 421
           SSFITADTRLGCQSDLMAFSALVDVMLENRKIAVARYVSKKDSEVNMCALCPVLIEHSNI
Sbjct: 361 SSFITADTRLGCQSDLMAFSALVDVMLENRKIAVARYVSKKDSEVNMCALCPVLIEHSNI 420

Query: 422 NSEKKFVKSLTLCRLPFAEDERVTDFPKLLDRTTTSGVPLKKETDGHQIDELMEQFVDSM 481
           NSEKKFVKSLTLCRLPFAEDERVTDFPKLLDRTTTSGVPLKKETDGHQIDELMEQFVDSM
Sbjct: 421 NSEKKFVKSLTLCRLPFAEDERVTDFPKLLDRTTTSGVPLKKETDGHQIDELMEQFVDSM 480

Query: 482 DTDELPEIPLGNYYQPIGEVTTDTTLPLPSLNKDQEENKKDPLRIPTVFVYRQQQVLLEW 541
           DTDELPEIPLGNYYQPIGEVTTDTTLPLPSLNKDQEENKKDPLRIPTVFVYRQQQVLLEW
Sbjct: 481 DTDELPEIPLGNYYQPIGEVTTDTTLPLPSLNKDQEENKKDPLRIPTVFVYRQQQVLLEW 540

Query: 542 IHQLMINDSREFEIPELPDSLKNKISPYTHKKFDSTKLVEVLGIKKVDKLKLDSELKTEL 601
           IHQLMINDSREFEIPELPDSLKNKISPYTHKKFDSTKLVEVLGIKKVDKLKLDSELKTEL
Sbjct: 541 IHQLMINDSREFEIPELPDSLKNKISPYTHKKFDSTKLVEVLGIKKVDKLKLDSELKTEL 600

Query: 602 EREKIPDLETLLKRGEQHSRGSPNNSNN 629
           EREKIPDLETLLKRGEQHSRGSPNNSNN
Sbjct: 601 EREKIPDLETLLKRGEQHSRGSPNNSNN 628


>6ERG-A nrPDB
          Length = 544

 Score = 37.7 bits (86), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 340 PGLDLRGFLNREALPRYFLTSESSFITADTRLGCQSDLMAFSALVDVMLENRKIAVARYV 399
           PGL L GF     L ++     S F+  +  L   S  + FSAL+   LE    A+ RY 
Sbjct: 343 PGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTL-FSALLIKCLEKEVAALCRYT 401

Query: 400 SKKDSEVNMCALCPVLIEHSNINSEKKFVK--SLTLCRLPFAEDERVTDF 447
            +++      AL P   +   ++ +K  V      L  LPFA+D+R   F
Sbjct: 402 PRRNIPPYFVALVP---QEEELDDQKIQVTPPGFQLVFLPFADDKRKMPF 448


>1JEY-A nrPDB
          Length = 609

 Score = 37.7 bits (86), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 340 PGLDLRGFLNREALPRYFLTSESSFITADTRLGCQSDLMAFSALVDVMLENRKIAVARYV 399
           PGL L GF     L ++     S F+  +  L   S  + FSAL+   LE    A+ RY 
Sbjct: 343 PGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTL-FSALLIKCLEKEVAALCRYT 401

Query: 400 SKKDSEVNMCALCPVLIEHSNINSEKKFVK--SLTLCRLPFAEDERVTDF 447
            +++      AL P   +   ++ +K  V      L  LPFA+D+R   F
Sbjct: 402 PRRNIPPYFVALVP---QEEELDDQKIQVTPPGFQLVFLPFADDKRKMPF 448


>6ERF-B nrPDB
          Length = 572

 Score = 37.4 bits (85), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 11/144 (7%)

Query: 308 ISKDSVTKAYRYGADYVVLPSVLVDQTVYES-FPGLDLRGFLNREALPRYFLTSESSFIT 366
           + K+ + + +RYG+D V    V  +Q  Y+S      + GF     + R F         
Sbjct: 322 VLKEDIIQGFRYGSDIVPFSKVDEEQMKYKSEGKCFSVLGFCKSSQVQRRFFMGNQVLKV 381

Query: 367 ADTRLGCQSDLMAFSALVDVMLENRKIAVARYVSKKDSEVNMCALCPVLIEHSNINSEKK 426
              R   ++  +A S+L+  + +   +A+ RY   K +   +    P    H   N E  
Sbjct: 382 FAAR-DDEAAAVALSSLIHALDDLDMVAIVRYAYDKRANPQVGVAFP----HIKHNYE-- 434

Query: 427 FVKSLTLCRLPFAEDERVTDFPKL 450
               L   +LPF ED R   F  L
Sbjct: 435 ---CLVYVQLPFMEDLRQYMFSSL 455


>5Y58-A nrPDB
          Length = 575

 Score = 31.6 bits (70), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 17/143 (11%)

Query: 314 TKAYRYGADYVVLPSVLVDQTVYESF----PGLDLRGFLNREALPRYFLT-SESSFITAD 368
            K Y YG D  +  S   DQ V E++      L + GF +      YF    +SSFI  D
Sbjct: 305 VKVYPYG-DLDINLSDSQDQIVMEAYTQKDAFLKIIGFRSSSKSIHYFNNIDKSSFIVPD 363

Query: 369 TRLGCQSDLMAFSALVDVMLENRKIAVARYVSKKDSEVNMCALCPVLIEHSNINSEKKFV 428
                +  +   ++L+ ++ +  KIA+     K +S  ++  L P        +S K + 
Sbjct: 364 -EAKYEGSIRTLASLLKILRKKDKIAILWGKLKSNSHPSLYTLSP--------SSVKDYN 414

Query: 429 KSLTLCRLPFAEDERVTDFPKLL 451
           +   L R+PF ++ R   FP LL
Sbjct: 415 EGFYLYRVPFLDEIR--KFPSLL 435


>1C7G-A nrPDB
          Length = 456

 Score = 31.6 bits (70), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 7/112 (6%)

Query: 441 DERVTDFPKLLDRTTTSGVPLKKETDGHQIDELMEQFVDSMDTDELPEIPL-GNYYQPIG 499
           + RV     L D+   +GVP+ + T GH +     +F   +  D+ P   L  + Y   G
Sbjct: 316 EHRVKQVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETG 375

Query: 500 EVTTDTTLPLPSLNKDQEENKKDPLR-----IP-TVFVYRQQQVLLEWIHQL 545
             + +  +     +K+  EN +  L      IP  V+ Y    V+ + I +L
Sbjct: 376 VRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKL 427


>1PKK-A nrPDB
          Length = 204

 Score = 30.8 bits (68), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 318 RYGADYVVLPSVLVDQTVYESFPGLDLRGFLNREALPRYFLTSE--SSFITADTRLGCQS 375
           +Y  DYVV   VL     Y   P      +  R +L R FLTS   + +I A  +     
Sbjct: 85  KYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSLGRVFLTSHQTAGWIDAGFKGKITL 144

Query: 376 DLMAFSALVDVMLENRKIA 394
           +++AF   V ++ +N++I 
Sbjct: 145 EIVAFDKPV-ILYKNQRIG 162


>3U48-A nrPDB
          Length = 775

 Score = 29.3 bits (64), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 29/144 (20%), Positives = 64/144 (44%), Gaps = 4/144 (2%)

Query: 403 DSEVNMCALCPVLIEHSNINSEKKFVKSLTL--CRLPFAEDERVTDFPKLLDRTTTSGVP 460
           D+ VNM     V  +H+   S  + +K       R+ +A    + +   L++R T  G  
Sbjct: 391 DNRVNMPGTWSVAAKHAESVSLLEGLKKAAGNDARILYAHGSNLDEDKSLIERATMFGKT 450

Query: 461 LKKETDGHQIDELMEQFVDSMDTDELPEIPLGNYYQPIGEVTTDTTLPLPSLNKDQEENK 520
           LK   D    D ++++ VD  +  ++    LG   +  GE ++ + + +P+L ++  +  
Sbjct: 451 LK--YDPRPKDVVIKEAVDIANQADVIVAALGESAEMSGEASSRSNIEIPALQRELLQAL 508

Query: 521 KDPLRIPTVFVYRQQQVLLEWIHQ 544
               +   + ++  + + L W H+
Sbjct: 509 LKTGKPVVLVLFTGRPLALTWEHE 532


>2XKR-A nrPDB
          Length = 398

 Score = 29.3 bits (64), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 372 GCQSDLMAFSALVDV----MLENRKIAVARYVSK--KDSEVNMCALCPVLIEHSNINSEK 425
           G + D  A   ++D+     L  RK+  A +  K  KD E ++ ALC  LI+      E 
Sbjct: 64  GIRPDQPALPMMIDMDDPAHLLRRKLVNAGFTRKRVKDKEASIAALCDTLIDAVCERGEC 123

Query: 426 KFVKSLTLCRLPFA 439
            FV+ L    LP A
Sbjct: 124 DFVRDLA-APLPMA 136


>5GW5-q nrPDB
          Length = 568

 Score = 29.3 bits (64), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 27/44 (61%)

Query: 173 KSNWLKLVEAIPNSRIYNMNELLVEITSPATSVVKPVRVFSGEL 216
           K+  LK+++ + +S+ Y   ++L E+ S A S V PV   +GE+
Sbjct: 156 KNELLKMIKPVISSKKYGSEDILSELVSEAVSHVLPVAQQAGEI 199


>5FG0-A nrPDB
          Length = 414

 Score = 29.3 bits (64), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 498 IGEVTTDTTLPLPSLNKDQEENKKDPLRIPTVFVYRQQQVLLEWIHQLMINDSRE 552
           +G    D ++  PSLN+  E   KDP +I  ++   Q+Q LL  + ++++N++ +
Sbjct: 128 LGTCELDYSVSKPSLNELTECFNKDPAKINALWAVFQEQ-LLNLVKEIVVNENED 181


>3P09-A nrPDB
          Length = 290

 Score = 28.9 bits (63), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 3/39 (7%)

Query: 272 RYVGVKSIIEYEIHNEG---NKKNVSEDDQSGSSYIPVT 307
           +++ V +I++Y++HN+G    K  +++DD     Y P+T
Sbjct: 67  KFLLVGAILDYDMHNQGFLDKKIPINQDDIGKLGYAPIT 105


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

5Y58-B nrPDB                                                         1325   0.0  

Sequences not found previously or not previously below threshold:

6ERG-A nrPDB                                                           39   0.009
1JEY-A nrPDB                                                           39   0.009
6ERF-B nrPDB                                                           38   0.013
5Y58-A nrPDB                                                           37   0.035
5FG0-A nrPDB                                                           32   0.77 
5FLW-A nrPDB                                                           31   1.3  
5HEE-A nrPDB                                                           31   2.0  
1C7G-A nrPDB                                                           30   2.6  
1ML4-A nrPDB                                                           30   2.9  
3U48-A nrPDB                                                           30   3.3  
6J5T-G nrPDB                                                           30   4.3  
1PKK-A nrPDB                                                           30   4.3  
3P09-A nrPDB                                                           29   4.7  
2D0C-A nrPDB                                                           29   8.2  
5A3F-A nrPDB                                                           29   8.2  
4A0G-A nrPDB                                                           29   8.3  


CONVERGED!
>5Y58-B nrPDB
          Length = 628

 Score = 1325 bits (3429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 628/628 (100%), Positives = 628/628 (100%)

Query: 2   SSESTTFIVDVSPSMMKNNNVSKSMAYLEYTLLNKSKKSRKTDWISCYLANCPVSENSQE 61
           SSESTTFIVDVSPSMMKNNNVSKSMAYLEYTLLNKSKKSRKTDWISCYLANCPVSENSQE
Sbjct: 1   SSESTTFIVDVSPSMMKNNNVSKSMAYLEYTLLNKSKKSRKTDWISCYLANCPVSENSQE 60

Query: 62  IPNVFQIQSFLAPVTTTATIGFIKRLKQYCDQHSHDSSNEGLQSMIQCLLVVSLDIKQQF 121
           IPNVFQIQSFLAPVTTTATIGFIKRLKQYCDQHSHDSSNEGLQSMIQCLLVVSLDIKQQF
Sbjct: 61  IPNVFQIQSFLAPVTTTATIGFIKRLKQYCDQHSHDSSNEGLQSMIQCLLVVSLDIKQQF 120

Query: 122 QARKILKQIVVFTDNLDDLDITDEEIDLLTEELSTRIILIDCGKDTQEERKKSNWLKLVE 181
           QARKILKQIVVFTDNLDDLDITDEEIDLLTEELSTRIILIDCGKDTQEERKKSNWLKLVE
Sbjct: 121 QARKILKQIVVFTDNLDDLDITDEEIDLLTEELSTRIILIDCGKDTQEERKKSNWLKLVE 180

Query: 182 AIPNSRIYNMNELLVEITSPATSVVKPVRVFSGELRLGADILSTQTSNPSGSMQDENCLC 241
           AIPNSRIYNMNELLVEITSPATSVVKPVRVFSGELRLGADILSTQTSNPSGSMQDENCLC
Sbjct: 181 AIPNSRIYNMNELLVEITSPATSVVKPVRVFSGELRLGADILSTQTSNPSGSMQDENCLC 240

Query: 242 IKVEAFPATKAVSGLNRKTAVEVEDSQKKERYVGVKSIIEYEIHNEGNKKNVSEDDQSGS 301
           IKVEAFPATKAVSGLNRKTAVEVEDSQKKERYVGVKSIIEYEIHNEGNKKNVSEDDQSGS
Sbjct: 241 IKVEAFPATKAVSGLNRKTAVEVEDSQKKERYVGVKSIIEYEIHNEGNKKNVSEDDQSGS 300

Query: 302 SYIPVTISKDSVTKAYRYGADYVVLPSVLVDQTVYESFPGLDLRGFLNREALPRYFLTSE 361
           SYIPVTISKDSVTKAYRYGADYVVLPSVLVDQTVYESFPGLDLRGFLNREALPRYFLTSE
Sbjct: 301 SYIPVTISKDSVTKAYRYGADYVVLPSVLVDQTVYESFPGLDLRGFLNREALPRYFLTSE 360

Query: 362 SSFITADTRLGCQSDLMAFSALVDVMLENRKIAVARYVSKKDSEVNMCALCPVLIEHSNI 421
           SSFITADTRLGCQSDLMAFSALVDVMLENRKIAVARYVSKKDSEVNMCALCPVLIEHSNI
Sbjct: 361 SSFITADTRLGCQSDLMAFSALVDVMLENRKIAVARYVSKKDSEVNMCALCPVLIEHSNI 420

Query: 422 NSEKKFVKSLTLCRLPFAEDERVTDFPKLLDRTTTSGVPLKKETDGHQIDELMEQFVDSM 481
           NSEKKFVKSLTLCRLPFAEDERVTDFPKLLDRTTTSGVPLKKETDGHQIDELMEQFVDSM
Sbjct: 421 NSEKKFVKSLTLCRLPFAEDERVTDFPKLLDRTTTSGVPLKKETDGHQIDELMEQFVDSM 480

Query: 482 DTDELPEIPLGNYYQPIGEVTTDTTLPLPSLNKDQEENKKDPLRIPTVFVYRQQQVLLEW 541
           DTDELPEIPLGNYYQPIGEVTTDTTLPLPSLNKDQEENKKDPLRIPTVFVYRQQQVLLEW
Sbjct: 481 DTDELPEIPLGNYYQPIGEVTTDTTLPLPSLNKDQEENKKDPLRIPTVFVYRQQQVLLEW 540

Query: 542 IHQLMINDSREFEIPELPDSLKNKISPYTHKKFDSTKLVEVLGIKKVDKLKLDSELKTEL 601
           IHQLMINDSREFEIPELPDSLKNKISPYTHKKFDSTKLVEVLGIKKVDKLKLDSELKTEL
Sbjct: 541 IHQLMINDSREFEIPELPDSLKNKISPYTHKKFDSTKLVEVLGIKKVDKLKLDSELKTEL 600

Query: 602 EREKIPDLETLLKRGEQHSRGSPNNSNN 629
           EREKIPDLETLLKRGEQHSRGSPNNSNN
Sbjct: 601 EREKIPDLETLLKRGEQHSRGSPNNSNN 628


>6ERG-A nrPDB
          Length = 544

 Score = 38.5 bits (88), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 340 PGLDLRGFLNREALPRYFLTSESSFITADTRLGCQSDLMAFSALVDVMLENRKIAVARYV 399
           PGL L GF     L ++     S F+  +  L   S  + FSAL+   LE    A+ RY 
Sbjct: 343 PGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTL-FSALLIKCLEKEVAALCRYT 401

Query: 400 SKKDSEVNMCALCPVLIEHSNINSEKKFVK--SLTLCRLPFAEDERVTDF 447
            +++      AL P   +   ++ +K  V      L  LPFA+D+R   F
Sbjct: 402 PRRNIPPYFVALVP---QEEELDDQKIQVTPPGFQLVFLPFADDKRKMPF 448


>1JEY-A nrPDB
          Length = 609

 Score = 38.5 bits (88), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 340 PGLDLRGFLNREALPRYFLTSESSFITADTRLGCQSDLMAFSALVDVMLENRKIAVARYV 399
           PGL L GF     L ++     S F+  +  L   S  + FSAL+   LE    A+ RY 
Sbjct: 343 PGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTL-FSALLIKCLEKEVAALCRYT 401

Query: 400 SKKDSEVNMCALCPVLIEHSNINSEKKFVK--SLTLCRLPFAEDERVTDF 447
            +++      AL P   +   ++ +K  V      L  LPFA+D+R   F
Sbjct: 402 PRRNIPPYFVALVP---QEEELDDQKIQVTPPGFQLVFLPFADDKRKMPF 448


>6ERF-B nrPDB
          Length = 572

 Score = 37.8 bits (86), Expect = 0.013,   Method: Composition-based stats.
 Identities = 64/305 (20%), Positives = 112/305 (36%), Gaps = 59/305 (19%)

Query: 265 EDSQKKERYVGVKSIIEYEIHNEGNKKNVSEDDQSGSSYIPVTISKDSVTKAYRYGADYV 324
           E  +K    V  K++ + +I  E     +++DD++        + K+ + + +RYG+D V
Sbjct: 287 ERVKKTWTVVDAKTLKKEDIQKE-TVYCLNDDDET-------EVLKEDIIQGFRYGSDIV 338

Query: 325 VLPSVLVDQTVYES-FPGLDLRGFLNREALPRYFLTSESSFITADTRLGCQSDLMAFSAL 383
               V  +Q  Y+S      + GF     + R F            R   ++  +A S+L
Sbjct: 339 PFSKVDEEQMKYKSEGKCFSVLGFCKSSQVQRRFFMGNQVLKVFAAR-DDEAAAVALSSL 397

Query: 384 VDVMLENRKIAVARYVSKKDSEVNMCALCPVLIEHSNINSEKKFVKSLTLCRLPFAEDER 443
           +  + +   +A+ RY   K +   +    P    H   N E      L   +LPF ED R
Sbjct: 398 IHALDDLDMVAIVRYAYDKRANPQVGVAFP----HIKHNYE-----CLVYVQLPFMEDLR 448

Query: 444 VTDFPKLLDRTTTSGVPLKKETDG----------HQIDELMEQFVDSMDTDELPE----- 488
              F  L  + +    P + + +            + DE  +   D   T ++P      
Sbjct: 449 QYMFSSL--KNSKKYAPTEAQLNAVDALIDSMSLAKKDEKTDTLEDLFPTTKIPNPRFQR 506

Query: 489 ---------------IP-----LGNYYQPIGEVTTDTTLPLP---SLNKDQEENKKDPLR 525
                          +P     + N   P  EVTT + +PL    +L    E  KKD + 
Sbjct: 507 LFQCLLHRALHPREPLPPIQQHIWNMLNPPAEVTTKSQIPLSKIKTLFPLIEAKKKDQVT 566

Query: 526 IPTVF 530
              +F
Sbjct: 567 AQEIF 571


>5Y58-A nrPDB
          Length = 575

 Score = 36.6 bits (83), Expect = 0.035,   Method: Composition-based stats.
 Identities = 63/280 (22%), Positives = 110/280 (39%), Gaps = 34/280 (12%)

Query: 268 QKKERYVGVKSIIEYEIHNEGNK-------KNVSEDDQSGSSYIPVTISKD---SVTKAY 317
           +K    VGVK    Y     G +       +++ ++  S   ++     +D      K Y
Sbjct: 249 EKTNFIVGVKGYTMYTHEKAGVRYKLVYEHEDIRQEAYSKRKFLNPITGEDVTGKTVKVY 308

Query: 318 RYGADYVVLPSVLVDQTVYESFPGLD----LRGFLNREALPRYFLT-SESSFITADTRLG 372
            YG D  +  S   DQ V E++   D    + GF +      YF    +SSFI  D    
Sbjct: 309 PYG-DLDINLSDSQDQIVMEAYTQKDAFLKIIGFRSSSKSIHYFNNIDKSSFIVPD-EAK 366

Query: 373 CQSDLMAFSALVDVMLENRKIAVARYVSKKDSEVNMCALCPVLIEHSNINSEKKFVKSLT 432
            +  +   ++L+ ++ +  KIA+     K +S  ++  L P        +S K + +   
Sbjct: 367 YEGSIRTLASLLKILRKKDKIAILWGKLKSNSHPSLYTLSP--------SSVKDYNEGFY 418

Query: 433 LCRLPFAEDERVTDFPKLLDRTTTSGVPLKKETDGHQIDELMEQF--VDSMDTDELPEIP 490
           L R+PF ++ R   FP LL     S   L  +        +M  F   D  +  +     
Sbjct: 419 LYRVPFLDEIR--KFPSLLSYDDGSEHKLDYDNMKKVTQSIMGYFNLRDGYNPSDFKNPL 476

Query: 491 LGNYYQPIGE--VTTDTTL---PLPSLNKDQEENKKDPLR 525
           L  +Y+ + +  +  +TT      P+  KD+   + D LR
Sbjct: 477 LQKHYKVLHDYLLQIETTFDENETPNTKKDRMMREDDSLR 516


>5FG0-A nrPDB
          Length = 414

 Score = 32.0 bits (71), Expect = 0.77,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 498 IGEVTTDTTLPLPSLNKDQEENKKDPLRIPTVFVYRQQQVLLEWIHQLMINDSRE 552
           +G    D ++  PSLN+  E   KDP +I  ++   Q+Q LL  + ++++N++ +
Sbjct: 128 LGTCELDYSVSKPSLNELTECFNKDPAKINALWAVFQEQ-LLNLVKEIVVNENED 181


>5FLW-A nrPDB
          Length = 304

 Score = 31.2 bits (69), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 297 DQSGSSYIPVTISKDSVTKAYRYGADYVVLPSVLVDQTVYESFPGLDLRGFLNREALPRY 356
           D+ GS YI ++  +D  T  YR   DY+ +   +  +   +   GL+    + ++ L  +
Sbjct: 144 DEDGSGYI-MSEDRDHGTHIYRLADDYLTIVEDVACERATDYPYGLESPTIIKKDGLYYW 202

Query: 357 FLTSESSFITADTRLGCQSDL 377
           F +  +S+ T D +    +DL
Sbjct: 203 FGSQLTSWDTNDNKYSTATDL 223


>5HEE-A nrPDB
          Length = 262

 Score = 30.8 bits (68), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 532 YRQQQVLLEWIHQLMINDSREFEIPELPDSLKNKISPYTH 571
           YR++    + +   +IN+SR  E+PE+PD L  K  P ++
Sbjct: 185 YRKESEEYDRLIMELINESRLEELPEIPDELIEKALPDSY 224


>1C7G-A nrPDB
          Length = 456

 Score = 30.4 bits (67), Expect = 2.6,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 7/112 (6%)

Query: 441 DERVTDFPKLLDRTTTSGVPLKKETDGHQIDELMEQFVDSMDTDELPEIPL-GNYYQPIG 499
           + RV     L D+   +GVP+ + T GH +     +F   +  D+ P   L  + Y   G
Sbjct: 316 EHRVKQVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETG 375

Query: 500 EVTTDTTLPLPSLNKDQEENKKDPLR-----IP-TVFVYRQQQVLLEWIHQL 545
             + +  +     +K+  EN +  L      IP  V+ Y    V+ + I +L
Sbjct: 376 VRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKL 427


>1ML4-A nrPDB
          Length = 308

 Score = 30.1 bits (66), Expect = 2.9,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 13/134 (9%)

Query: 485 ELPEIPLGNYYQPIGEVTTDTTLPLPSLNKDQEENKKDPLRIPTVFVYRQQQVLLEWIHQ 544
           E+ E+P+ N      +  T T L L ++ K  E  + D L+I  +   +  + +      
Sbjct: 119 EVAEVPVINAGDGSNQHPTQTLLDLYTIKK--EFGRIDGLKIGLLGDLKYGRTVHSLAEA 176

Query: 545 LMINDSREFEI-PEL---PDSLKNKISPYTHKKFDSTKLVEVLGIKKVDKLKLDSELKTE 600
           L   D   + I PEL   P  +  ++     K  ++T L +V+G       KLD    T 
Sbjct: 177 LTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIG-------KLDVLYVTR 229

Query: 601 LEREKIPDLETLLK 614
           +++E+ PD +  LK
Sbjct: 230 IQKERFPDEQEYLK 243


>3U48-A nrPDB
          Length = 775

 Score = 30.1 bits (66), Expect = 3.3,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 64/144 (44%), Gaps = 4/144 (2%)

Query: 403 DSEVNMCALCPVLIEHSNINSEKKFVKSLT--LCRLPFAEDERVTDFPKLLDRTTTSGVP 460
           D+ VNM     V  +H+   S  + +K       R+ +A    + +   L++R T  G  
Sbjct: 391 DNRVNMPGTWSVAAKHAESVSLLEGLKKAAGNDARILYAHGSNLDEDKSLIERATMFGKT 450

Query: 461 LKKETDGHQIDELMEQFVDSMDTDELPEIPLGNYYQPIGEVTTDTTLPLPSLNKDQEENK 520
           LK   D    D ++++ VD  +  ++    LG   +  GE ++ + + +P+L ++  +  
Sbjct: 451 LK--YDPRPKDVVIKEAVDIANQADVIVAALGESAEMSGEASSRSNIEIPALQRELLQAL 508

Query: 521 KDPLRIPTVFVYRQQQVLLEWIHQ 544
               +   + ++  + + L W H+
Sbjct: 509 LKTGKPVVLVLFTGRPLALTWEHE 532


>6J5T-G nrPDB
          Length = 852

 Score = 29.7 bits (65), Expect = 4.3,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 21/132 (15%)

Query: 116 DIKQQFQ-ARKILKQIVVFTDNLDDLDITDEEIDLLTEELSTRI-----ILIDC----GK 165
           D ++Q +  +  LK +  F  + +    T+E +  L  +L   +     IL+DC    G 
Sbjct: 26  DYRKQLEDLQSELKYMQSFLKDAERQKRTNETLRTLVADLRELVYEAEDILVDCQLADGD 85

Query: 166 DTQEERKKSNWLKLVEA--IP-----NSRIYNMNELLVEITSPATSVVKPVRVFSGELRL 218
           D  E+R  + WL  +    +P     + R+  +NE + +I S     V+P   F     +
Sbjct: 86  DGNEQRSSNAWLSRLHPARVPLQYKKSKRLQEINERITKIKSQ----VEPYFEFITPSNV 141

Query: 219 GADILSTQTSNP 230
           G D  + + S+P
Sbjct: 142 GRDNGTDRWSSP 153


>1PKK-A nrPDB
          Length = 204

 Score = 29.7 bits (65), Expect = 4.3,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 318 RYGADYVVLPSVLVDQTVYESFPGLDLRGFLNREALPRYFLTSESS--FITADTRLGCQS 375
           +Y  DYVV   VL     Y   P      +  R +L R FLTS  +  +I A  +     
Sbjct: 85  KYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSLGRVFLTSHQTAGWIDAGFKGKITL 144

Query: 376 DLMAFSALVDVMLENRKIA 394
           +++AF   V ++ +N++I 
Sbjct: 145 EIVAFDKPV-ILYKNQRIG 162


>3P09-A nrPDB
          Length = 290

 Score = 29.3 bits (64), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 3/39 (7%)

Query: 272 RYVGVKSIIEYEIHNEG---NKKNVSEDDQSGSSYIPVT 307
           +++ V +I++Y++HN+G    K  +++DD     Y P+T
Sbjct: 67  KFLLVGAILDYDMHNQGFLDKKIPINQDDIGKLGYAPIT 105


>2D0C-A nrPDB
          Length = 310

 Score = 28.5 bits (62), Expect = 8.2,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 4/145 (2%)

Query: 457 SGVPLKKETDGHQIDELMEQFVDSMDTDELPEIPLGNYYQPIGEVTTDTTLPLPSLNKDQ 516
           SG     ET  HQ   L    + S+      E+  G+Y+ PI  V     +  P + K  
Sbjct: 67  SGASASNETADHQPSALAAHQLGSLSAIGSDEVGTGDYFGPI--VVAAAYVDRPHIAKIA 124

Query: 517 EENKKDPLRIPTVFVYRQQQVLLEWI-HQLMINDSREFEIPELPDSLKNKISPYTHKKFD 575
               KD  ++    + R    ++E + H + + D+ ++   +     + K+    H +  
Sbjct: 125 ALGVKDSKQLNDEAIKRIAPAIMETVPHAVTVLDNPQYNRWQRSGMPQTKMKALLHNR-T 183

Query: 576 STKLVEVLGIKKVDKLKLDSELKTE 600
             KLV+ +   + + + +D  LK +
Sbjct: 184 LVKLVDAIAPAEPEAIIIDEFLKRD 208


>5A3F-A nrPDB
          Length = 754

 Score = 28.5 bits (62), Expect = 8.2,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 384 VDVMLENRKIAVARYVSKKDSEVNMCA--LCPVLIEHSNINSEKKFVKSLTLCRLPFAED 441
           +D  LE +   +   V    S +N C   L P  I H  IN+ K F+ S  L +L  +ED
Sbjct: 641 MDPQLERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINSELLAQLYSSED 700

Query: 442 E 442
           +
Sbjct: 701 Q 701


>4A0G-A nrPDB
          Length = 831

 Score = 28.5 bits (62), Expect = 8.3,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 9/68 (13%)

Query: 396 ARYVSKKDSEVNMCALCPVLIEHSNINSEKKFVKSLTL---------CRLPFAEDERVTD 446
           +R+V  K   +++    P+ I +S ++S     KSL L         C L F +++ VT 
Sbjct: 87  SRFVFSKLDSLSLRRQIPISISNSVLHSSLPAAKSLGLNVEVSESGMCSLNFRDEKTVTG 146

Query: 447 FPKLLDRT 454
            P+LL +T
Sbjct: 147 APELLCKT 154


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.314    0.131    0.366 

Lambda     K      H
   0.267   0.0407    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,624,775
Number of Sequences: 36641
Number of extensions: 973052
Number of successful extensions: 1895
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1882
Number of HSP's gapped (non-prelim): 48
length of query: 629
length of database: 10,336,785
effective HSP length: 103
effective length of query: 526
effective length of database: 6,562,762
effective search space: 3452012812
effective search space used: 3452012812
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)