BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q04307
         (110 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

6CNB-I nrPDB                                                          233   1e-62
3QT1-I nrPDB                                                           78   7e-16
6GMH-I nrPDB                                                           51   1e-07
3H0G-I nrPDB                                                           50   2e-07
5XON-U nrPDB                                                           48   9e-07
5X51-I nrPDB                                                           48   1e-06
1PQV-S nrPDB                                                           47   1e-06
5IY6-U nrPDB                                                           47   2e-06
5M3F-I nrPDB                                                           46   4e-06
3GTM-S nrPDB                                                           45   6e-06
2R92-I nrPDB                                                           40   3e-04
6NCS-A nrPDB                                                           29   0.52 
4RUL-A nrPDB                                                           29   0.59 
1CNT-1 nrPDB                                                           28   1.2  
3LXQ-A nrPDB                                                           27   1.3  
5AYL-A nrPDB                                                           25   6.1  
3EDY-A nrPDB                                                           25   6.2  

>6CNB-I nrPDB
          Length = 110

 Score =  233 bits (595), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MLSFCPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWD 60
           MLSFCPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWD
Sbjct: 1   MLSFCPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWD 60

Query: 61  NVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
           NVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN
Sbjct: 61  NVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110


>3QT1-I nrPDB
          Length = 133

 Score = 78.2 bits (191), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 58/115 (50%), Gaps = 11/115 (9%)

Query: 2   LSFCPSCNNMLLITS-GDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLG---- 56
             FC  CNNML      ++      CR+C Y        +Y  + +    + +  G    
Sbjct: 24  FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELI--TNIGETAGVVQD 81

Query: 57  -GGWDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
            G    + ++  +CP    C      FFQLQIRSADEPMTTFYKCVNCGHRWKEN
Sbjct: 82  IGSDPTLPRSDRECPK---CHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWKEN 133


>6GMH-I nrPDB
          Length = 125

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 2   LSFCPSCNNMLLITSG-DSGVYTLACRSCPYEFPIEGIEIYDRKKLPR-KEVDDVLGGGW 59
           + FC  CNNML      ++ +   ACR+C Y+   +   IY  K      E+  ++    
Sbjct: 14  IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73

Query: 60  DNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCV--NCGHRWKE 109
            +    +T+      CG + A FFQ     A++ M  +Y C   +CGHRW E
Sbjct: 74  QDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125


>3H0G-I nrPDB
          Length = 113

 Score = 50.1 bits (118), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 9/113 (7%)

Query: 2   LSFCPSCNNMLLITSGD-SGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWD 60
             +C  CNNML         V  LACR+C Y       ++Y R +L    V++       
Sbjct: 4   FQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATSKVY-RHELQSSNVENTTVSHDA 62

Query: 61  NVDQT----KTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKE 109
           + D T      +CP    C    A F+Q   R  D  MT  Y CV+CG  ++E
Sbjct: 63  STDPTLPRSDKECPR---CHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFEE 112


>5XON-U nrPDB
          Length = 190

 Score = 48.1 bits (113), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 10/91 (10%)

Query: 19  SGVYTLACRS-CPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWDNVDQTKTQCPNYDTCGG 77
           S + T++ +   P     E  EIY      +K + D  G   +N    + +C     C  
Sbjct: 107 SKLVTMSAQELAPDSLKKEMEEIY------KKNLFDAQGATENNSVTDRFEC---GKCKQ 157

Query: 78  ESAYFFQLQIRSADEPMTTFYKCVNCGHRWK 108
               +FQ Q RSA  P+TTF KC NCG+RWK
Sbjct: 158 RKVSYFQKQTRSAAAPLTTFCKCENCGNRWK 188


>5X51-I nrPDB
          Length = 115

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 19/118 (16%)

Query: 2   LSFCPSCNNMLLITSGDSGVYTL-ACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLG---G 57
             FC  CNNML           L +CR+C Y       E+ +  K+ R E+   +G   G
Sbjct: 4   FRFCLECNNMLYPKEDKENQRLLYSCRNCDY------TELAEDPKVYRHELITNIGETAG 57

Query: 58  GWDNVDQTKT------QCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKE 109
             D++ Q  T      +CP    C      FFQ Q R  D  MT FY C+NC   +++
Sbjct: 58  IVDDIGQDPTLPRSDKECPE---CHSRDCVFFQSQQRRKDTNMTLFYVCLNCKKTFRD 112


>1PQV-S nrPDB
          Length = 309

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 24/34 (70%)

Query: 75  CGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWK 108
           C  +   ++QLQ RSADEP+TTF  C  CG+RWK
Sbjct: 274 CKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307


>5IY6-U nrPDB
          Length = 301

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 24/34 (70%)

Query: 75  CGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWK 108
           C  ++  + Q+Q RSADEPMTTF  C  CG+RWK
Sbjct: 266 CKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299


>5M3F-I nrPDB
          Length = 125

 Score = 45.8 bits (107), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 66  KTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
           K +CP    CG E   +  LQ+RSADE  T FY C +CG++++ N
Sbjct: 83  KEKCPQ---CGNEEMNYHTLQLRSADEGATVFYTCTSCGYKFRTN 124


>3GTM-S nrPDB
          Length = 173

 Score = 45.1 bits (105), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 75  CGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWK 108
           C  +   ++QLQ RSAD P+TTF  C  CG+RWK
Sbjct: 138 CKEKKVSYYQLQTRSADHPLTTFCTCEACGNRWK 171


>2R92-I nrPDB
          Length = 122

 Score = 39.7 bits (91), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 2   LSFCPSCNNMLL-ITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLG---- 56
             FC  CNNML      ++      CR+C Y        +Y  + +    + +  G    
Sbjct: 4   FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELI--TNIGETAGVVQD 61

Query: 57  -GGWDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGH 105
            G    + ++  +CP    C      FFQ Q R  D  M  F+ C++C H
Sbjct: 62  IGSDPTLPRSDRECPK---CHSRENVFFQSQQRRKDTSMVLFFVCLSCSH 108


>6NCS-A nrPDB
          Length = 290

 Score = 28.9 bits (63), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 2   LSFCPSCNNMLLITSGDSGVYTLACRSCPYEFPIE-GIEIYDRKKLP 47
           ++ C  CN  LL  + DSG+  +  R       IE  + I+ +KK P
Sbjct: 126 IASCDICNITLLEAAADSGLIVILSRGTASASEIETAVSIFKKKKSP 172


>4RUL-A nrPDB
          Length = 867

 Score = 28.9 bits (63), Expect = 0.59,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 29/123 (23%)

Query: 5   CPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGG--GWDNV 62
           CP+C   + I +  +GV+ L C    Y  P +         +P  EV +VL G     N 
Sbjct: 601 CPTCGRKMGIRTASTGVF-LGCSG--YALPPKERCKTTINLVPENEVLNVLEGEDAETNA 657

Query: 63  DQTKTQCP---------------------NYDTCGGESAYFFQLQIRSADEPMTTFYKCV 101
            + K +CP                     N  TC G      + +I+  D P+    +C 
Sbjct: 658 LRAKRRCPKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIV---ECE 714

Query: 102 NCG 104
            CG
Sbjct: 715 KCG 717


>1CNT-1 nrPDB
          Length = 187

 Score = 27.7 bits (60), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 15  TSGD--SGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVD 52
           T GD    ++TL  +   + + IE + I    K+PR E D
Sbjct: 101 TEGDFHQAIHTLLLQVAAFAYQIEELMILLEYKIPRNEAD 140


>3LXQ-A nrPDB
          Length = 450

 Score = 27.3 bits (59), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 14  ITSGDSGVYTLACRSC---PYEFPIEGIEIYDRKKLPR----KEVDDVLGGGWDNVDQT 65
           ++ GD   ++L   S    PYE+P   IE YD + + R    K  D  LG  +D   ++
Sbjct: 234 LSKGDKPFFSLVFTSSNHSPYEYPEGKIEQYDSEHMTRNNAVKYSDYALGTFFDKAKKS 292


>5AYL-A nrPDB
          Length = 783

 Score = 25.4 bits (54), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 51  VDDVLGGGWDNVDQTKTQCPNYDTCGGESAYF 82
           +D ++  GW + D   + C + DT    +AYF
Sbjct: 273 LDGLVNVGWVDCDAQDSLCKSLDTTASTTAYF 304


>3EDY-A nrPDB
          Length = 544

 Score = 25.4 bits (54), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 11/62 (17%)

Query: 12  LLITSGDSGV--YTLACR---------SCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWD 60
           LL  SGDSG   ++++ R         S PY   + G    +   +  + VD + GGG+ 
Sbjct: 335 LLFASGDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSFQEPFLITNEIVDYISGGGFS 394

Query: 61  NV 62
           NV
Sbjct: 395 NV 396


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

6CNB-I nrPDB                                                          150   1e-37
3QT1-I nrPDB                                                          134   9e-33
6GMH-I nrPDB                                                          125   3e-30
2R92-I nrPDB                                                          114   8e-27
3H0G-I nrPDB                                                          111   8e-26
5X51-I nrPDB                                                          109   2e-25
5XON-U nrPDB                                                           85   5e-18
1PQV-S nrPDB                                                           77   1e-15
3GTM-S nrPDB                                                           73   4e-14
5IY6-U nrPDB                                                           62   5e-11
5M3F-I nrPDB                                                           57   2e-09

Sequences not found previously or not previously below threshold:

1VK6-A nrPDB                                                           26   3.0  
3VTI-A nrPDB                                                           26   3.5  
6J4Y-M nrPDB                                                           26   4.5  
5A5B-M nrPDB                                                           26   5.4  
4CGY-A nrPDB                                                           25   6.7  
2QKD-A nrPDB                                                           25   9.9  


CONVERGED!
>6CNB-I nrPDB
          Length = 110

 Score =  150 bits (378), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MLSFCPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWD 60
           MLSFCPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWD
Sbjct: 1   MLSFCPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWD 60

Query: 61  NVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
           NVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN
Sbjct: 61  NVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110


>3QT1-I nrPDB
          Length = 133

 Score =  134 bits (336), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 46/115 (40%), Positives = 58/115 (50%), Gaps = 11/115 (9%)

Query: 2   LSFCPSCNNMLLITSG-DSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLG---- 56
             FC  CNNML      ++      CR+C Y        +Y  + +    + +  G    
Sbjct: 24  FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELI--TNIGETAGVVQD 81

Query: 57  -GGWDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
            G    + ++  +CP    C      FFQLQIRSADEPMTTFYKCVNCGHRWKEN
Sbjct: 82  IGSDPTLPRSDRECP---KCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWKEN 133


>6GMH-I nrPDB
          Length = 125

 Score =  125 bits (314), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 2   LSFCPSCNNMLLITSG-DSGVYTLACRSCPYEFPIEGIEIYDRKKLPR-KEVDDVLGGGW 59
           + FC  CNNML      ++ +   ACR+C Y+   +   IY  K      E+  ++    
Sbjct: 14  IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73

Query: 60  DNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCV--NCGHRWKE 109
            +    +T+      CG + A FFQ     A++ M  +Y C   +CGHRW E
Sbjct: 74  QDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125


>2R92-I nrPDB
          Length = 122

 Score =  114 bits (285), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 11/115 (9%)

Query: 2   LSFCPSCNNMLLITSG-DSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLG---- 56
             FC  CNNML      ++      CR+C Y        +Y  + +    + +  G    
Sbjct: 4   FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELI--TNIGETAGVVQD 61

Query: 57  -GGWDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
            G    + ++  +CP    C      FFQ Q R  D  M  F+ C++C H +  +
Sbjct: 62  IGSDPTLPRSDRECP---KCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSD 113


>3H0G-I nrPDB
          Length = 113

 Score =  111 bits (277), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 3/110 (2%)

Query: 2   LSFCPSCNNMLLITSGD-SGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWD 60
             +C  CNNML         V  LACR+C Y       ++Y  + L    V++       
Sbjct: 4   FQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATSKVYRHE-LQSSNVENTTVSHDA 62

Query: 61  NVDQT-KTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKE 109
           + D T          C    A F+Q   R  D  MT  Y CV+CG  ++E
Sbjct: 63  STDPTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFEE 112


>5X51-I nrPDB
          Length = 115

 Score =  109 bits (273), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 11/114 (9%)

Query: 2   LSFCPSCNNMLLITSGDSG-VYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLG---- 56
             FC  CNNML             +CR+C Y    E  ++Y  + +    + +  G    
Sbjct: 4   FRFCLECNNMLYPKEDKENQRLLYSCRNCDYTELAEDPKVYRHELI--TNIGETAGIVDD 61

Query: 57  -GGWDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKE 109
            G    + ++  +CP    C      FFQ Q R  D  MT FY C+NC   +++
Sbjct: 62  IGQDPTLPRSDKECPE---CHSRDCVFFQSQQRRKDTNMTLFYVCLNCKKTFRD 112


>5XON-U nrPDB
          Length = 190

 Score = 85.3 bits (209), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 10/91 (10%)

Query: 19  SGVYTLACRS-CPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWDNVDQTKTQCPNYDTCGG 77
           S + T++ +   P     E  EIY      +K + D  G   +N    + +C     C  
Sbjct: 107 SKLVTMSAQELAPDSLKKEMEEIY------KKNLFDAQGATENNSVTDRFEC---GKCKQ 157

Query: 78  ESAYFFQLQIRSADEPMTTFYKCVNCGHRWK 108
               +FQ Q RSA  P+TTF KC NCG+RWK
Sbjct: 158 RKVSYFQKQTRSAAAPLTTFCKCENCGNRWK 188


>1PQV-S nrPDB
          Length = 309

 Score = 77.2 bits (188), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 28  SCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWDNVDQTKTQCPNYDTCGGESAYFFQLQI 87
           +C  +           +++ ++ + +  G   +     +  C     C  +   ++QLQ 
Sbjct: 230 TCDAKDLAPAPLKQKIEEIAKQNLYNAQGATIERSVTDRFTC---GKCKEKKVSYYQLQT 286

Query: 88  RSADEPMTTFYKCVNCGHRWK 108
           RSADEP+TTF  C  CG+RWK
Sbjct: 287 RSADEPLTTFCTCEACGNRWK 307


>3GTM-S nrPDB
          Length = 173

 Score = 72.6 bits (176), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 28  SCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWDNVDQTKTQCPNYDTCGGESAYFFQLQI 87
           +C  +           +++ ++ + +  G   +     +  C     C  +   ++QLQ 
Sbjct: 94  TCDAKDLAPAPLKQKIEEIAKQNLYNAQGATIERSVTDRFTC---GKCKEKKVSYYQLQT 150

Query: 88  RSADEPMTTFYKCVNCGHRWK 108
           RSAD P+TTF  C  CG+RWK
Sbjct: 151 RSADHPLTTFCTCEACGNRWK 171


>5IY6-U nrPDB
          Length = 301

 Score = 62.2 bits (149), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 23  TLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWDNVDQTKTQCPNYDTCGGESAYF 82
            +       +   E  +   ++ +   ++    G        T+T       C  ++  +
Sbjct: 222 RMTAEEMASDELKEMRKNLTKEAIREHQMAKTGG--------TQTDLFTCGKCKKKNCTY 273

Query: 83  FQLQIRSADEPMTTFYKCVNCGHRWK 108
            Q+Q RSADEPMTTF  C  CG+RWK
Sbjct: 274 TQVQTRSADEPMTTFVVCNECGNRWK 299


>5M3F-I nrPDB
          Length = 125

 Score = 57.1 bits (136), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 11/106 (10%)

Query: 5   CPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWDNVDQ 64
           C  C   +   S  S +  +   +    FP     +  +K + +  +         +   
Sbjct: 30  CSQCK-AIYPKSQFSNLKVVTT-TADDAFP---SSLRAKKSVVKTSLKKNE---LKDGAT 81

Query: 65  TKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
            K +CP    CG E   +  LQ+RSADE  T FY C +CG++++ N
Sbjct: 82  IKEKCPQ---CGNEEMNYHTLQLRSADEGATVFYTCTSCGYKFRTN 124


>1VK6-A nrPDB
          Length = 269

 Score = 26.3 bits (56), Expect = 3.0,   Method: Composition-based stats.
 Identities = 7/42 (16%), Positives = 15/42 (35%)

Query: 3   SFCPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRK 44
            +C  C + +  +  +  +    CR   Y      I +  R+
Sbjct: 108 KYCGYCGHEMYPSKTEWAMLCSHCRERYYPQIAPCIIVAIRR 149


>3VTI-A nrPDB
          Length = 761

 Score = 25.9 bits (55), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 12/39 (30%)

Query: 71  NYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKE 109
           N   CG   +    +    A   M  F  C  C   + +
Sbjct: 135 NCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHD 173


>6J4Y-M nrPDB
          Length = 113

 Score = 25.9 bits (55), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 20/60 (33%)

Query: 4  FCPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWDNVD 63
          FC   N+++      + +  L C+ C   F      +     +    +D       +N D
Sbjct: 30 FCNHDNSVVCTLDKKNSIGLLECKKCNLSFQAPINSLSQPIDIYSDWIDACEAVAEENAD 89


>5A5B-M nrPDB
          Length = 434

 Score = 25.6 bits (54), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 22/74 (29%)

Query: 9   NNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWDNVDQTKTQ 68
           NN++L    D+       R  PY        +   +   ++  +    GG  N+D T   
Sbjct: 55  NNVMLEKIKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGGNVNLDNTAVG 114

Query: 69  CPNYDTCGGESAYF 82
                        F
Sbjct: 115 KAAVVKTSSRQTVF 128


>4CGY-A nrPDB
          Length = 754

 Score = 25.2 bits (53), Expect = 6.7,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 2   LSFCPSCNNMLLITSGDSGVYTLAC 26
           +  CP CN  +++ +  +G + L+C
Sbjct: 656 IRKCPQCNKDMVLKTKKNGGFYLSC 680


>2QKD-A nrPDB
          Length = 404

 Score = 24.8 bits (52), Expect = 9.9,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 60  DNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKE 109
           + V Q  T CP  +     +    Q+        M T   C NCGHR  E
Sbjct: 214 NEVLQFNTNCPECNAPAQTNMKLVQIPHFKEVIIMAT--NCENCGHRTNE 261


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.309    0.120    0.339 

Lambda     K      H
   0.267   0.0362    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,939,152
Number of Sequences: 36641
Number of extensions: 127695
Number of successful extensions: 353
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 301
Number of HSP's gapped (non-prelim): 46
length of query: 110
length of database: 10,336,785
effective HSP length: 76
effective length of query: 34
effective length of database: 7,552,069
effective search space: 256770346
effective search space used: 256770346
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 52 (24.8 bits)