BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= Q04307
(110 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
6CNB-I nrPDB 233 1e-62
3QT1-I nrPDB 78 7e-16
6GMH-I nrPDB 51 1e-07
3H0G-I nrPDB 50 2e-07
5XON-U nrPDB 48 9e-07
5X51-I nrPDB 48 1e-06
1PQV-S nrPDB 47 1e-06
5IY6-U nrPDB 47 2e-06
5M3F-I nrPDB 46 4e-06
3GTM-S nrPDB 45 6e-06
2R92-I nrPDB 40 3e-04
6NCS-A nrPDB 29 0.52
4RUL-A nrPDB 29 0.59
1CNT-1 nrPDB 28 1.2
3LXQ-A nrPDB 27 1.3
5AYL-A nrPDB 25 6.1
3EDY-A nrPDB 25 6.2
>6CNB-I nrPDB
Length = 110
Score = 233 bits (595), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MLSFCPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWD 60
MLSFCPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWD
Sbjct: 1 MLSFCPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWD 60
Query: 61 NVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
NVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN
Sbjct: 61 NVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
>3QT1-I nrPDB
Length = 133
Score = 78.2 bits (191), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Query: 2 LSFCPSCNNMLLITS-GDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLG---- 56
FC CNNML ++ CR+C Y +Y + + + + G
Sbjct: 24 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELI--TNIGETAGVVQD 81
Query: 57 -GGWDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
G + ++ +CP C FFQLQIRSADEPMTTFYKCVNCGHRWKEN
Sbjct: 82 IGSDPTLPRSDRECPK---CHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWKEN 133
>6GMH-I nrPDB
Length = 125
Score = 50.8 bits (120), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 2 LSFCPSCNNMLLITSG-DSGVYTLACRSCPYEFPIEGIEIYDRKKLPR-KEVDDVLGGGW 59
+ FC CNNML ++ + ACR+C Y+ + IY K E+ ++
Sbjct: 14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73
Query: 60 DNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCV--NCGHRWKE 109
+ +T+ CG + A FFQ A++ M +Y C +CGHRW E
Sbjct: 74 QDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>3H0G-I nrPDB
Length = 113
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 9/113 (7%)
Query: 2 LSFCPSCNNMLLITSGD-SGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWD 60
+C CNNML V LACR+C Y ++Y R +L V++
Sbjct: 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATSKVY-RHELQSSNVENTTVSHDA 62
Query: 61 NVDQT----KTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKE 109
+ D T +CP C A F+Q R D MT Y CV+CG ++E
Sbjct: 63 STDPTLPRSDKECPR---CHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFEE 112
>5XON-U nrPDB
Length = 190
Score = 48.1 bits (113), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 19 SGVYTLACRS-CPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWDNVDQTKTQCPNYDTCGG 77
S + T++ + P E EIY +K + D G +N + +C C
Sbjct: 107 SKLVTMSAQELAPDSLKKEMEEIY------KKNLFDAQGATENNSVTDRFEC---GKCKQ 157
Query: 78 ESAYFFQLQIRSADEPMTTFYKCVNCGHRWK 108
+FQ Q RSA P+TTF KC NCG+RWK
Sbjct: 158 RKVSYFQKQTRSAAAPLTTFCKCENCGNRWK 188
>5X51-I nrPDB
Length = 115
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 19/118 (16%)
Query: 2 LSFCPSCNNMLLITSGDSGVYTL-ACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLG---G 57
FC CNNML L +CR+C Y E+ + K+ R E+ +G G
Sbjct: 4 FRFCLECNNMLYPKEDKENQRLLYSCRNCDY------TELAEDPKVYRHELITNIGETAG 57
Query: 58 GWDNVDQTKT------QCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKE 109
D++ Q T +CP C FFQ Q R D MT FY C+NC +++
Sbjct: 58 IVDDIGQDPTLPRSDKECPE---CHSRDCVFFQSQQRRKDTNMTLFYVCLNCKKTFRD 112
>1PQV-S nrPDB
Length = 309
Score = 47.4 bits (111), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 75 CGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWK 108
C + ++QLQ RSADEP+TTF C CG+RWK
Sbjct: 274 CKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307
>5IY6-U nrPDB
Length = 301
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 75 CGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWK 108
C ++ + Q+Q RSADEPMTTF C CG+RWK
Sbjct: 266 CKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>5M3F-I nrPDB
Length = 125
Score = 45.8 bits (107), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 66 KTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
K +CP CG E + LQ+RSADE T FY C +CG++++ N
Sbjct: 83 KEKCPQ---CGNEEMNYHTLQLRSADEGATVFYTCTSCGYKFRTN 124
>3GTM-S nrPDB
Length = 173
Score = 45.1 bits (105), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 75 CGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWK 108
C + ++QLQ RSAD P+TTF C CG+RWK
Sbjct: 138 CKEKKVSYYQLQTRSADHPLTTFCTCEACGNRWK 171
>2R92-I nrPDB
Length = 122
Score = 39.7 bits (91), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 11/110 (10%)
Query: 2 LSFCPSCNNMLL-ITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLG---- 56
FC CNNML ++ CR+C Y +Y + + + + G
Sbjct: 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELI--TNIGETAGVVQD 61
Query: 57 -GGWDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGH 105
G + ++ +CP C FFQ Q R D M F+ C++C H
Sbjct: 62 IGSDPTLPRSDRECPK---CHSRENVFFQSQQRRKDTSMVLFFVCLSCSH 108
>6NCS-A nrPDB
Length = 290
Score = 28.9 bits (63), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 2 LSFCPSCNNMLLITSGDSGVYTLACRSCPYEFPIE-GIEIYDRKKLP 47
++ C CN LL + DSG+ + R IE + I+ +KK P
Sbjct: 126 IASCDICNITLLEAAADSGLIVILSRGTASASEIETAVSIFKKKKSP 172
>4RUL-A nrPDB
Length = 867
Score = 28.9 bits (63), Expect = 0.59, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 29/123 (23%)
Query: 5 CPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGG--GWDNV 62
CP+C + I + +GV+ L C Y P + +P EV +VL G N
Sbjct: 601 CPTCGRKMGIRTASTGVF-LGCSG--YALPPKERCKTTINLVPENEVLNVLEGEDAETNA 657
Query: 63 DQTKTQCP---------------------NYDTCGGESAYFFQLQIRSADEPMTTFYKCV 101
+ K +CP N TC G + +I+ D P+ +C
Sbjct: 658 LRAKRRCPKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIV---ECE 714
Query: 102 NCG 104
CG
Sbjct: 715 KCG 717
>1CNT-1 nrPDB
Length = 187
Score = 27.7 bits (60), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 15 TSGD--SGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVD 52
T GD ++TL + + + IE + I K+PR E D
Sbjct: 101 TEGDFHQAIHTLLLQVAAFAYQIEELMILLEYKIPRNEAD 140
>3LXQ-A nrPDB
Length = 450
Score = 27.3 bits (59), Expect = 1.3, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 14 ITSGDSGVYTLACRSC---PYEFPIEGIEIYDRKKLPR----KEVDDVLGGGWDNVDQT 65
++ GD ++L S PYE+P IE YD + + R K D LG +D ++
Sbjct: 234 LSKGDKPFFSLVFTSSNHSPYEYPEGKIEQYDSEHMTRNNAVKYSDYALGTFFDKAKKS 292
>5AYL-A nrPDB
Length = 783
Score = 25.4 bits (54), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 51 VDDVLGGGWDNVDQTKTQCPNYDTCGGESAYF 82
+D ++ GW + D + C + DT +AYF
Sbjct: 273 LDGLVNVGWVDCDAQDSLCKSLDTTASTTAYF 304
>3EDY-A nrPDB
Length = 544
Score = 25.4 bits (54), Expect = 6.2, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 12 LLITSGDSGV--YTLACR---------SCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWD 60
LL SGDSG ++++ R S PY + G + + + VD + GGG+
Sbjct: 335 LLFASGDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSFQEPFLITNEIVDYISGGGFS 394
Query: 61 NV 62
NV
Sbjct: 395 NV 396
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
6CNB-I nrPDB 150 1e-37
3QT1-I nrPDB 134 9e-33
6GMH-I nrPDB 125 3e-30
2R92-I nrPDB 114 8e-27
3H0G-I nrPDB 111 8e-26
5X51-I nrPDB 109 2e-25
5XON-U nrPDB 85 5e-18
1PQV-S nrPDB 77 1e-15
3GTM-S nrPDB 73 4e-14
5IY6-U nrPDB 62 5e-11
5M3F-I nrPDB 57 2e-09
Sequences not found previously or not previously below threshold:
1VK6-A nrPDB 26 3.0
3VTI-A nrPDB 26 3.5
6J4Y-M nrPDB 26 4.5
5A5B-M nrPDB 26 5.4
4CGY-A nrPDB 25 6.7
2QKD-A nrPDB 25 9.9
CONVERGED!
>6CNB-I nrPDB
Length = 110
Score = 150 bits (378), Expect = 1e-37, Method: Composition-based stats.
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MLSFCPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWD 60
MLSFCPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWD
Sbjct: 1 MLSFCPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWD 60
Query: 61 NVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
NVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN
Sbjct: 61 NVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
>3QT1-I nrPDB
Length = 133
Score = 134 bits (336), Expect = 9e-33, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Query: 2 LSFCPSCNNMLLITSG-DSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLG---- 56
FC CNNML ++ CR+C Y +Y + + + + G
Sbjct: 24 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELI--TNIGETAGVVQD 81
Query: 57 -GGWDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
G + ++ +CP C FFQLQIRSADEPMTTFYKCVNCGHRWKEN
Sbjct: 82 IGSDPTLPRSDRECP---KCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWKEN 133
>6GMH-I nrPDB
Length = 125
Score = 125 bits (314), Expect = 3e-30, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 2 LSFCPSCNNMLLITSG-DSGVYTLACRSCPYEFPIEGIEIYDRKKLPR-KEVDDVLGGGW 59
+ FC CNNML ++ + ACR+C Y+ + IY K E+ ++
Sbjct: 14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73
Query: 60 DNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCV--NCGHRWKE 109
+ +T+ CG + A FFQ A++ M +Y C +CGHRW E
Sbjct: 74 QDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>2R92-I nrPDB
Length = 122
Score = 114 bits (285), Expect = 8e-27, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 11/115 (9%)
Query: 2 LSFCPSCNNMLLITSG-DSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLG---- 56
FC CNNML ++ CR+C Y +Y + + + + G
Sbjct: 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELI--TNIGETAGVVQD 61
Query: 57 -GGWDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
G + ++ +CP C FFQ Q R D M F+ C++C H + +
Sbjct: 62 IGSDPTLPRSDRECP---KCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSD 113
>3H0G-I nrPDB
Length = 113
Score = 111 bits (277), Expect = 8e-26, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 3/110 (2%)
Query: 2 LSFCPSCNNMLLITSGD-SGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWD 60
+C CNNML V LACR+C Y ++Y + L V++
Sbjct: 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATSKVYRHE-LQSSNVENTTVSHDA 62
Query: 61 NVDQT-KTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKE 109
+ D T C A F+Q R D MT Y CV+CG ++E
Sbjct: 63 STDPTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFEE 112
>5X51-I nrPDB
Length = 115
Score = 109 bits (273), Expect = 2e-25, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 2 LSFCPSCNNMLLITSGDSG-VYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLG---- 56
FC CNNML +CR+C Y E ++Y + + + + G
Sbjct: 4 FRFCLECNNMLYPKEDKENQRLLYSCRNCDYTELAEDPKVYRHELI--TNIGETAGIVDD 61
Query: 57 -GGWDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKE 109
G + ++ +CP C FFQ Q R D MT FY C+NC +++
Sbjct: 62 IGQDPTLPRSDKECPE---CHSRDCVFFQSQQRRKDTNMTLFYVCLNCKKTFRD 112
>5XON-U nrPDB
Length = 190
Score = 85.3 bits (209), Expect = 5e-18, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 19 SGVYTLACRS-CPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWDNVDQTKTQCPNYDTCGG 77
S + T++ + P E EIY +K + D G +N + +C C
Sbjct: 107 SKLVTMSAQELAPDSLKKEMEEIY------KKNLFDAQGATENNSVTDRFEC---GKCKQ 157
Query: 78 ESAYFFQLQIRSADEPMTTFYKCVNCGHRWK 108
+FQ Q RSA P+TTF KC NCG+RWK
Sbjct: 158 RKVSYFQKQTRSAAAPLTTFCKCENCGNRWK 188
>1PQV-S nrPDB
Length = 309
Score = 77.2 bits (188), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 28 SCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWDNVDQTKTQCPNYDTCGGESAYFFQLQI 87
+C + +++ ++ + + G + + C C + ++QLQ
Sbjct: 230 TCDAKDLAPAPLKQKIEEIAKQNLYNAQGATIERSVTDRFTC---GKCKEKKVSYYQLQT 286
Query: 88 RSADEPMTTFYKCVNCGHRWK 108
RSADEP+TTF C CG+RWK
Sbjct: 287 RSADEPLTTFCTCEACGNRWK 307
>3GTM-S nrPDB
Length = 173
Score = 72.6 bits (176), Expect = 4e-14, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 28 SCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWDNVDQTKTQCPNYDTCGGESAYFFQLQI 87
+C + +++ ++ + + G + + C C + ++QLQ
Sbjct: 94 TCDAKDLAPAPLKQKIEEIAKQNLYNAQGATIERSVTDRFTC---GKCKEKKVSYYQLQT 150
Query: 88 RSADEPMTTFYKCVNCGHRWK 108
RSAD P+TTF C CG+RWK
Sbjct: 151 RSADHPLTTFCTCEACGNRWK 171
>5IY6-U nrPDB
Length = 301
Score = 62.2 bits (149), Expect = 5e-11, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 23 TLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWDNVDQTKTQCPNYDTCGGESAYF 82
+ + E + ++ + ++ G T+T C ++ +
Sbjct: 222 RMTAEEMASDELKEMRKNLTKEAIREHQMAKTGG--------TQTDLFTCGKCKKKNCTY 273
Query: 83 FQLQIRSADEPMTTFYKCVNCGHRWK 108
Q+Q RSADEPMTTF C CG+RWK
Sbjct: 274 TQVQTRSADEPMTTFVVCNECGNRWK 299
>5M3F-I nrPDB
Length = 125
Score = 57.1 bits (136), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
Query: 5 CPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWDNVDQ 64
C C + S S + + + FP + +K + + + +
Sbjct: 30 CSQCK-AIYPKSQFSNLKVVTT-TADDAFP---SSLRAKKSVVKTSLKKNE---LKDGAT 81
Query: 65 TKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
K +CP CG E + LQ+RSADE T FY C +CG++++ N
Sbjct: 82 IKEKCPQ---CGNEEMNYHTLQLRSADEGATVFYTCTSCGYKFRTN 124
>1VK6-A nrPDB
Length = 269
Score = 26.3 bits (56), Expect = 3.0, Method: Composition-based stats.
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 3 SFCPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRK 44
+C C + + + + + CR Y I + R+
Sbjct: 108 KYCGYCGHEMYPSKTEWAMLCSHCRERYYPQIAPCIIVAIRR 149
>3VTI-A nrPDB
Length = 761
Score = 25.9 bits (55), Expect = 3.5, Method: Composition-based stats.
Identities = 8/39 (20%), Positives = 12/39 (30%)
Query: 71 NYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKE 109
N CG + + A M F C C + +
Sbjct: 135 NCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHD 173
>6J4Y-M nrPDB
Length = 113
Score = 25.9 bits (55), Expect = 4.5, Method: Composition-based stats.
Identities = 10/60 (16%), Positives = 20/60 (33%)
Query: 4 FCPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWDNVD 63
FC N+++ + + L C+ C F + + +D +N D
Sbjct: 30 FCNHDNSVVCTLDKKNSIGLLECKKCNLSFQAPINSLSQPIDIYSDWIDACEAVAEENAD 89
>5A5B-M nrPDB
Length = 434
Score = 25.6 bits (54), Expect = 5.4, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 22/74 (29%)
Query: 9 NNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWDNVDQTKTQ 68
NN++L D+ R PY + + ++ + GG N+D T
Sbjct: 55 NNVMLEKIKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGGNVNLDNTAVG 114
Query: 69 CPNYDTCGGESAYF 82
F
Sbjct: 115 KAAVVKTSSRQTVF 128
>4CGY-A nrPDB
Length = 754
Score = 25.2 bits (53), Expect = 6.7, Method: Composition-based stats.
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 2 LSFCPSCNNMLLITSGDSGVYTLAC 26
+ CP CN +++ + +G + L+C
Sbjct: 656 IRKCPQCNKDMVLKTKKNGGFYLSC 680
>2QKD-A nrPDB
Length = 404
Score = 24.8 bits (52), Expect = 9.9, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 60 DNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKE 109
+ V Q T CP + + Q+ M T C NCGHR E
Sbjct: 214 NEVLQFNTNCPECNAPAQTNMKLVQIPHFKEVIIMAT--NCENCGHRTNE 261
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.309 0.120 0.339
Lambda K H
0.267 0.0362 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,939,152
Number of Sequences: 36641
Number of extensions: 127695
Number of successful extensions: 353
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 301
Number of HSP's gapped (non-prelim): 46
length of query: 110
length of database: 10,336,785
effective HSP length: 76
effective length of query: 34
effective length of database: 7,552,069
effective search space: 256770346
effective search space used: 256770346
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 52 (24.8 bits)