BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Q03071 (99 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 1HV2-A nrPDB 199 3e-52 5ZB2-B nrPDB 170 1e-43 6GFX-B nrPDB 72 4e-14 1VCB-B nrPDB 72 6e-14 5HZG-C nrPDB 37 0.002 3C51-A nrPDB 34 0.012 1P22-B nrPDB 29 0.43 3WSO-B nrPDB 28 0.81 6GSA-C nrPDB 28 1.1 1NEX-A nrPDB 28 1.2 5AN3-D nrPDB 27 1.7 1FS2-B nrPDB 27 2.9 4R71-B nrPDB 26 4.2 4O8M-A nrPDB 25 7.1 3MC0-B nrPDB 25 7.3 3RTX-A nrPDB 25 8.0 6CZY-A nrPDB 25 8.6 3DFY-A nrPDB 25 8.9 >1HV2-A nrPDB Length = 99 Score = 199 bits (505), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 99/99 (100%), Positives = 99/99 (100%) Query: 1 MSQDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEY 60 MSQDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEY Sbjct: 1 MSQDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEY 60 Query: 61 LNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI 99 LNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI Sbjct: 61 LNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI 99 >5ZB2-B nrPDB Length = 103 Score = 170 bits (430), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 89/99 (89%), Positives = 89/99 (89%), Gaps = 10/99 (10%) Query: 1 MSQDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEY 60 MSQDFVTLVSKDDKEYEISRSAAMISPTLKA GRIELKQFDSHILEKAVEY Sbjct: 15 MSQDFVTLVSKDDKEYEISRSAAMISPTLKA----------GRIELKQFDSHILEKAVEY 64 Query: 61 LNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI 99 LNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI Sbjct: 65 LNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI 103 >6GFX-B nrPDB Length = 97 Score = 72.4 bits (176), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 38/96 (39%), Positives = 59/96 (61%), Gaps = 6/96 (6%) Query: 5 FVTLVSKDDKEYEISRSAAMISPTLKAMIEGP--FRESK-GRIELKQFDSHILEKAVEYL 61 +V L+S D E+ + R A+ S T+KAM+ GP F E++ + ++ SH+L K Y Sbjct: 3 YVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYF 62 Query: 62 NYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYL 97 Y ++Y+ S EIPEF I E++LELL+AA++L Sbjct: 63 TYKVRYTNSS---TEIPEFPIAPEIALELLMAANFL 95 >1VCB-B nrPDB Length = 112 Score = 72.0 bits (175), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 38/96 (39%), Positives = 59/96 (61%), Gaps = 6/96 (6%) Query: 5 FVTLVSKDDKEYEISRSAAMISPTLKAMIEGP--FRESK-GRIELKQFDSHILEKAVEYL 61 +V L+S D E+ + R A+ S T+KAM+ GP F E++ + ++ SH+L K Y Sbjct: 18 YVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYF 77 Query: 62 NYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYL 97 Y ++Y+ S EIPEF I E++LELL+AA++L Sbjct: 78 TYKVRYTNSS---TEIPEFPIAPEIALELLMAANFL 110 >5HZG-C nrPDB Length = 169 Score = 36.6 bits (83), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 15/107 (14%) Query: 6 VTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNL 65 + L S D + +E+ + A+ S T+ M+E ++ + L S IL K +EY ++ Sbjct: 15 IVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNG--VPLPNVTSKILAKVIEYCKRHV 72 Query: 66 KYS--------GVSEDDDEIPEFE-----IPTEMSLELLLAADYLSI 99 + + G + DD++ ++ I EL+LAA+YL+I Sbjct: 73 EAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNI 119 >3C51-A nrPDB Length = 543 Score = 34.3 bits (77), Expect = 0.012, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 5/62 (8%) Query: 14 KEYEISRSAAMISPTLKAMI--EGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVS 71 +EY+ S + TL MI GPFR ++E K+ +LE+AV Y + K+S S Sbjct: 364 EEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAVTYPD---KFSPAS 420 Query: 72 ED 73 +D Sbjct: 421 KD 422 >1P22-B nrPDB Length = 145 Score = 29.3 bits (64), Expect = 0.43, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 17/101 (16%) Query: 6 VTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNL 65 + L S D + +E+ A S T+K M+E + + L ++ IL+K +++ ++ Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDP---VPLPNVNAAILKKVIQWCTHH- 59 Query: 66 KYSGVSEDD--DEIPEFE-----IPTEMSLELLLAADYLSI 99 +DD D+IP ++ + EL+LAA+YL I Sbjct: 60 ------KDDPPDDIPVWDQEFLKVDQGTLFELILAANYLDI 94 >3WSO-B nrPDB Length = 166 Score = 28.1 bits (61), Expect = 0.81, Method: Compositional matrix adjust. Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 15/109 (13%) Query: 6 VTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGR---IELKQFDSHILEKAVEYLN 62 + L S D + +E+ A S T+K M+E + +G + L ++ IL+K +++ Sbjct: 7 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 66 Query: 63 YN-------LKYSGVSEDDDEIPEFE-----IPTEMSLELLLAADYLSI 99 ++ + D+IP ++ + EL+LAA+YL I Sbjct: 67 HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDI 115 >6GSA-C nrPDB Length = 197 Score = 27.7 bits (60), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 11/60 (18%) Query: 51 SHILEKAVEYLNYNLKYSGVSEDDDEIPE-----------FEIPTEMSLELLLAADYLSI 99 S +L+K +E+ ++ + EDDD+ + ++ EM E++LAA+YL+I Sbjct: 85 SSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNI 144 >1NEX-A nrPDB Length = 169 Score = 27.7 bits (60), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 11/60 (18%) Query: 51 SHILEKAVEYLNYNLKYSGVSEDDDEIPE-----------FEIPTEMSLELLLAADYLSI 99 S +L+K +E+ ++ + EDDD+ + ++ EM E++LAA+YL+I Sbjct: 59 SSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNI 118 >5AN3-D nrPDB Length = 131 Score = 27.3 bits (59), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 11/60 (18%) Query: 51 SHILEKAVEYLNYNLKYSGVSEDDDEIPE-----------FEIPTEMSLELLLAADYLSI 99 S +L+K +E+ ++ + EDDD+ + ++ EM E++LAA+YL+I Sbjct: 57 SSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNI 116 >1FS2-B nrPDB Length = 141 Score = 26.6 bits (57), Expect = 2.9, Method: Compositional matrix adjust. Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 15/106 (14%) Query: 6 VTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYN- 64 + L S D + +E+ A S T+K M+E + + L ++ IL+K +++ ++ Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDP---VPLPNVNAAILKKVIQWCTHHK 60 Query: 65 ------LKYSGVSEDDDEIPEFE-----IPTEMSLELLLAADYLSI 99 + D+IP ++ + EL+LAA+YL I Sbjct: 61 DDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDI 106 >4R71-B nrPDB Length = 595 Score = 25.8 bits (55), Expect = 4.2, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 15/27 (55%) Query: 17 EISRSAAMISPTLKAMIEGPFRESKGR 43 E+ + + T K EGPFRES G+ Sbjct: 379 EVFKYVGFTTNTKKTFSEGPFRESCGK 405 >4O8M-A nrPDB Length = 346 Score = 25.0 bits (53), Expect = 7.1, Method: Compositional matrix adjust. Identities = 12/37 (32%), Positives = 22/37 (59%) Query: 45 ELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFE 81 E+ + ++E+A NLK +GV+ +D ++P FE Sbjct: 263 EMVTYGGGLIEQAENEALENLKKAGVTVNDVDLPAFE 299 >3MC0-B nrPDB Length = 239 Score = 25.0 bits (53), Expect = 7.3, Method: Compositional matrix adjust. Identities = 13/29 (44%), Positives = 17/29 (58%) Query: 36 PFRESKGRIELKQFDSHILEKAVEYLNYN 64 P E +G I +QF SH L +EY +YN Sbjct: 32 PPVEGRGVINSRQFLSHDLIFPIEYKSYN 60 >3RTX-A nrPDB Length = 343 Score = 25.0 bits (53), Expect = 8.0, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 16/26 (61%) Query: 34 EGPFRESKGRIELKQFDSHILEKAVE 59 E PF + K ELKQ+D+ I+E E Sbjct: 271 ERPFAQIKVTKELKQYDNKIIECKFE 296 >6CZY-A nrPDB Length = 362 Score = 24.6 bits (52), Expect = 8.6, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%) Query: 54 LEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI 99 +++A +Y N+ +SG SE ++P FE LE A YL I Sbjct: 108 VKEAKKYCKTNVIWSGKSEKYTKVPSFE-----ELEQTPDAKYLHI 148 >3DFY-A nrPDB Length = 345 Score = 24.6 bits (52), Expect = 8.9, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Query: 53 ILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAA 94 + E+AV+Y+N L SG+S D + EI L+L++ Sbjct: 254 VKEEAVDYVNIKLMKSGIS---DALAIVEIAESSGLKLMIGC 292 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 1HV2-A nrPDB 150 1e-37 5ZB2-B nrPDB 131 6e-32 1VCB-B nrPDB 131 7e-32 6GFX-B nrPDB 128 5e-31 Sequences not found previously or not previously below threshold: 5HZG-C nrPDB 39 4e-04 3WSO-B nrPDB 39 4e-04 1P22-B nrPDB 36 0.003 1FS2-B nrPDB 36 0.004 3C51-A nrPDB 32 0.045 1NEX-A nrPDB 29 0.55 5AN3-D nrPDB 29 0.68 3MC0-B nrPDB 27 2.7 2VD8-A nrPDB 25 5.2 6GSA-C nrPDB 25 5.8 5L1U-A nrPDB 25 7.3 1AK7-A nrPDB 25 8.7 5DZY-A nrPDB 25 9.6 >1HV2-A nrPDB Length = 99 Score = 150 bits (379), Expect = 1e-37, Method: Composition-based stats. Identities = 99/99 (100%), Positives = 99/99 (100%) Query: 1 MSQDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEY 60 MSQDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEY Sbjct: 1 MSQDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEY 60 Query: 61 LNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI 99 LNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI Sbjct: 61 LNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI 99 >5ZB2-B nrPDB Length = 103 Score = 131 bits (330), Expect = 6e-32, Method: Composition-based stats. Identities = 89/99 (89%), Positives = 89/99 (89%), Gaps = 10/99 (10%) Query: 1 MSQDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEY 60 MSQDFVTLVSKDDKEYEISRSAAMISPTLKA GRIELKQFDSHILEKAVEY Sbjct: 15 MSQDFVTLVSKDDKEYEISRSAAMISPTLKA----------GRIELKQFDSHILEKAVEY 64 Query: 61 LNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI 99 LNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI Sbjct: 65 LNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI 103 >1VCB-B nrPDB Length = 112 Score = 131 bits (329), Expect = 7e-32, Method: Composition-based stats. Identities = 38/96 (39%), Positives = 59/96 (61%), Gaps = 6/96 (6%) Query: 5 FVTLVSKDDKEYEISRSAAMISPTLKAMIEGP--FRESK-GRIELKQFDSHILEKAVEYL 61 +V L+S D E+ + R A+ S T+KAM+ GP F E++ + ++ SH+L K Y Sbjct: 18 YVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYF 77 Query: 62 NYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYL 97 Y ++Y+ S EIPEF I E++LELL+AA++L Sbjct: 78 TYKVRYTNSS---TEIPEFPIAPEIALELLMAANFL 110 >6GFX-B nrPDB Length = 97 Score = 128 bits (322), Expect = 5e-31, Method: Composition-based stats. Identities = 38/96 (39%), Positives = 59/96 (61%), Gaps = 6/96 (6%) Query: 5 FVTLVSKDDKEYEISRSAAMISPTLKAMIEGP--FRESK-GRIELKQFDSHILEKAVEYL 61 +V L+S D E+ + R A+ S T+KAM+ GP F E++ + ++ SH+L K Y Sbjct: 3 YVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYF 62 Query: 62 NYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYL 97 Y ++Y+ S EIPEF I E++LELL+AA++L Sbjct: 63 TYKVRYTNSS---TEIPEFPIAPEIALELLMAANFL 95 >5HZG-C nrPDB Length = 169 Score = 39.3 bits (90), Expect = 4e-04, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 15/107 (14%) Query: 6 VTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNL 65 + L S D + +E+ + A+ S T+ M+E ++ + L S IL K +EY ++ Sbjct: 15 IVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNG--VPLPNVTSKILAKVIEYCKRHV 72 Query: 66 KYS--------GVSEDDDEIPEFE-----IPTEMSLELLLAADYLSI 99 + + G + DD++ ++ I EL+LAA+YL+I Sbjct: 73 EAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNI 119 >3WSO-B nrPDB Length = 166 Score = 39.3 bits (90), Expect = 4e-04, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 15/109 (13%) Query: 6 VTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGR---IELKQFDSHILEKAVEYLN 62 + L S D + +E+ A S T+K M+E + +G + L ++ IL+K +++ Sbjct: 7 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 66 Query: 63 YN-------LKYSGVSEDDDEIP----EF-EIPTEMSLELLLAADYLSI 99 ++ + D+IP EF ++ EL+LAA+YL I Sbjct: 67 HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDI 115 >1P22-B nrPDB Length = 145 Score = 36.2 bits (82), Expect = 0.003, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 13/99 (13%) Query: 6 VTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNL 65 + L S D + +E+ A S T+K M+E + + L ++ IL+K +++ ++ Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDP---VPLPNVNAAILKKVIQWCTHH- 59 Query: 66 KYSGVSEDDDEIP----EF-EIPTEMSLELLLAADYLSI 99 + D+IP EF ++ EL+LAA+YL I Sbjct: 60 ----KDDPPDDIPVWDQEFLKVDQGTLFELILAANYLDI 94 >1FS2-B nrPDB Length = 141 Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 15/106 (14%) Query: 6 VTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYN- 64 + L S D + +E+ A S T+K M+E + + L ++ IL+K +++ ++ Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDP---VPLPNVNAAILKKVIQWCTHHK 60 Query: 65 ------LKYSGVSEDDDEIP----EF-EIPTEMSLELLLAADYLSI 99 + D+IP EF ++ EL+LAA+YL I Sbjct: 61 DDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDI 106 >3C51-A nrPDB Length = 543 Score = 32.4 bits (72), Expect = 0.045, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%) Query: 13 DKEYEISRSAAMISPTLKAMIE--GPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGV 70 +EY+ S + TL MI GPFR ++E K+ +LE+AV Y K+S Sbjct: 363 GEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAV---TYPDKFSPA 419 Query: 71 SEDDDE 76 S+D E Sbjct: 420 SKDFCE 425 >1NEX-A nrPDB Length = 169 Score = 28.9 bits (63), Expect = 0.55, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 16/115 (13%) Query: 1 MSQDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFD-----SHILE 55 M V LVS + + + + + A S LK + + + S +L+ Sbjct: 4 MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQ 63 Query: 56 KAVEYLNYNLKYSGVSEDDDEIPE-----------FEIPTEMSLELLLAADYLSI 99 K +E+ ++ + EDDD+ + ++ EM E++LAA+YL+I Sbjct: 64 KVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNI 118 >5AN3-D nrPDB Length = 131 Score = 28.5 bits (62), Expect = 0.68, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 17/116 (14%) Query: 1 MSQDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGR------IELKQFDSHIL 54 M V LVS + + + + + A S LK + + + + S +L Sbjct: 1 MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDASGDDDDEDDDEIVMPVPNVRSSVL 60 Query: 55 EKAVEYLNYNLKYSGVSEDDDEIPE-----------FEIPTEMSLELLLAADYLSI 99 +K +E+ ++ + EDDD+ + ++ EM E++LAA+YL+I Sbjct: 61 QKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNI 116 >3MC0-B nrPDB Length = 239 Score = 26.6 bits (57), Expect = 2.7, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 21/45 (46%) Query: 20 RSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYN 64 +S + + P E +G I +QF SH L +EY +YN Sbjct: 16 KSNKGTMGNVMNLYMSPPVEGRGVINSRQFLSHDLIFPIEYKSYN 60 >2VD8-A nrPDB Length = 391 Score = 25.4 bits (54), Expect = 5.2, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 6/58 (10%) Query: 6 VTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNY 63 VTL+ + EY + A S T+ I RI ++ K VE +NY Sbjct: 336 VTLIGRQGDEYISATEVAEYSGTINYEIITTISFRVPRIFIRN------GKVVEVINY 387 >6GSA-C nrPDB Length = 197 Score = 25.4 bits (54), Expect = 5.8, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 11/60 (18%) Query: 51 SHILEKAVEYLNYNLKYSGVSEDDDEIPE-----------FEIPTEMSLELLLAADYLSI 99 S +L+K +E+ ++ + EDDD+ + ++ EM E++LAA+YL+I Sbjct: 85 SSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNI 144 >5L1U-A nrPDB Length = 401 Score = 25.0 bits (53), Expect = 7.3, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 10/86 (11%) Query: 6 VTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNL 65 V L + DD E E +R A M ++++ F + R+ + + H+ E L L Sbjct: 81 VALAAGDDHETEPARHAQM-----RSLLIPRFSTRRLRLMKTRIEHHVDE-----LLDQL 130 Query: 66 KYSGVSEDDDEIPEFEIPTEMSLELL 91 S D + F +PT + +LL Sbjct: 131 AASAPPVDLHRVLSFRLPTMVVCDLL 156 >1AK7-A nrPDB Length = 174 Score = 24.7 bits (52), Expect = 8.7, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 9/79 (11%) Query: 9 VSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYS 68 +S D K + ++ + I PF K F + EK Y Y+ + Sbjct: 49 LSADKKCIIVEEGKEILVGDVGVTITDPF---------KHFVGMLPEKDCRYALYDASFE 99 Query: 69 GVSEDDDEIPEFEIPTEMS 87 +E+ F E++ Sbjct: 100 TKESRKEELMFFLWAPELA 118 >5DZY-A nrPDB Length = 426 Score = 24.7 bits (52), Expect = 9.6, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 4/38 (10%) Query: 53 ILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLEL 90 ILE V++ +L+++ + +D PEF TEM L++ Sbjct: 81 ILENPVQFFQTDLQFTDI---NDHFPEFP-DTEMLLKI 114 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.313 0.133 0.338 Lambda K H 0.267 0.0407 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,405,891 Number of Sequences: 36641 Number of extensions: 110584 Number of successful extensions: 272 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 21 Number of HSP's that attempted gapping in prelim test: 232 Number of HSP's gapped (non-prelim): 48 length of query: 99 length of database: 10,336,785 effective HSP length: 67 effective length of query: 32 effective length of database: 7,881,838 effective search space: 252218816 effective search space used: 252218816 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 52 (24.6 bits)