BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q02201
         (448 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

4B2Z-A nrPDB                                                          929   0.0  
1ZI7-A nrPDB                                                          108   7e-24
5ZM8-A nrPDB                                                           87   2e-17
1M41-A nrPDB                                                           32   0.57 
4CAG-A nrPDB                                                           30   1.9  
2PFT-A nrPDB                                                           29   3.3  
2Z8S-A nrPDB                                                           29   3.5  
6BZC-A nrPDB                                                           29   4.2  
2XI1-A nrPDB                                                           28   8.3  

>4B2Z-A nrPDB
          Length = 448

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/448 (100%), Positives = 448/448 (100%)

Query: 1   MGSKKLTVGSDSHRLSKSSFSSNKSSHSATKDQPIDTDDIDEDDESGHNIILNIISQLRP 60
           MGSKKLTVGSDSHRLSKSSFSSNKSSHSATKDQPIDTDDIDEDDESGHNIILNIISQLRP
Sbjct: 1   MGSKKLTVGSDSHRLSKSSFSSNKSSHSATKDQPIDTDDIDEDDESGHNIILNIISQLRP 60

Query: 61  GCDLTRITLPTFILEKKSMLERVTNQLQFPEFLLQAHSEKDPLKRFLYVMKWYLAGWHIA 120
           GCDLTRITLPTFILEKKSMLERVTNQLQFPEFLLQAHSEKDPLKRFLYVMKWYLAGWHIA
Sbjct: 61  GCDLTRITLPTFILEKKSMLERVTNQLQFPEFLLQAHSEKDPLKRFLYVMKWYLAGWHIA 120

Query: 121 PKAVKKPLNPVLGEYFTAYWDLPNKQQAYYISEQTSHHPPECAYFYMIPESSIRVDGVVI 180
           PKAVKKPLNPVLGEYFTAYWDLPNKQQAYYISEQTSHHPPECAYFYMIPESSIRVDGVVI
Sbjct: 121 PKAVKKPLNPVLGEYFTAYWDLPNKQQAYYISEQTSHHPPECAYFYMIPESSIRVDGVVI 180

Query: 181 PKSRFLGNSSAAMMDGSTVLQFLDIKDGNGKPEKYVLTQPNVYVRGILFGKMRIELGDHM 240
           PKSRFLGNSSAAMMDGSTVLQFLDIKDGNGKPEKYVLTQPNVYVRGILFGKMRIELGDHM
Sbjct: 181 PKSRFLGNSSAAMMDGSTVLQFLDIKDGNGKPEKYVLTQPNVYVRGILFGKMRIELGDHM 240

Query: 241 IIKSPNFQADIEFKTKGYVFGTYDAIEGTVKDYDGNAYYEISGKWNDVMYLKDLKQPRSS 300
           IIKSPNFQADIEFKTKGYVFGTYDAIEGTVKDYDGNAYYEISGKWNDVMYLKDLKQPRSS
Sbjct: 241 IIKSPNFQADIEFKTKGYVFGTYDAIEGTVKDYDGNAYYEISGKWNDVMYLKDLKQPRSS 300

Query: 301 PKVFLDTHKESPLRPKVRPLSEQGEYESRKLWKKVTDALAVRNHPVATEEKFQIEDHQRQ 360
           PKVFLDTHKESPLRPKVRPLSEQGEYESRKLWKKVTDALAVRNHPVATEEKFQIEDHQRQ
Sbjct: 301 PKVFLDTHKESPLRPKVRPLSEQGEYESRKLWKKVTDALAVRNHPVATEEKFQIEDHQRQ 360

Query: 361 LAKKRIEDGVEFHPKLFRRSKPGEDLDYCIYKNIPVDEDPEKQIRSILQIAPILPGQQFT 420
           LAKKRIEDGVEFHPKLFRRSKPGEDLDYCIYKNIPVDEDPEKQIRSILQIAPILPGQQFT
Sbjct: 361 LAKKRIEDGVEFHPKLFRRSKPGEDLDYCIYKNIPVDEDPEKQIRSILQIAPILPGQQFT 420

Query: 421 DKFFIPAFEKIKSQKKMIENEKQNPAKQ 448
           DKFFIPAFEKIKSQKKMIENEKQNPAKQ
Sbjct: 421 DKFFIPAFEKIKSQKKMIENEKQNPAKQ 448


>1ZI7-A nrPDB
          Length = 406

 Score =  108 bits (269), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 159/359 (44%), Gaps = 60/359 (16%)

Query: 70  PTFILEKKSMLERVTNQLQFPEFLLQ----------AHSEKDP------LKRFLYVMKWY 113
           P FIL   S+ E      + PE  L+           H   DP      L R L V KW+
Sbjct: 5   PPFILSPISLTEFSQYWAEHPELFLEPSFINDDNYKEHCLIDPEVESPELARMLAVTKWF 64

Query: 114 LAGW-------HIAPKAVKKPLNPVLGEYFTAYWD---LPNKQQAYYISEQTSHHPPECA 163
           ++         + +  + KKPLNP LGE F   W+    P   +   +SEQ SHHPP  A
Sbjct: 65  ISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLSEQVSHHPPVTA 124

Query: 164 YFYMIPESSIRVDGVVIPKSRFLGNSSAAMMDGSTVLQF----LDIKDGNGKPEKYVLTQ 219
           +     ++ +++ G    K+ F   + + M+   TV QF    LDIKD     E Y++T 
Sbjct: 125 FSIFNDKNKVKLQGYNQIKASF---TKSLML---TVKQFGHTMLDIKD-----ESYLVTP 173

Query: 220 PNVYVRGILFGKMRIEL-GDHMIIKSPNFQADIEFKTKGYVFGTYDAIEGTV-------K 271
           P +++ GIL     +EL G   I  S      IEF     V G  ++ +  +       K
Sbjct: 174 PPLHIEGILVASPFVELEGKSYIQSSTGLLCVIEFSG---VDGKKNSFKARIYKDSKDSK 230

Query: 272 DYDGNAYYEISGKWNDVMYLKDLKQPRSSPKVFLDTHKESPLRPKVRPLSEQGEYESRKL 331
           D +  A Y ISG+W+    +    +   S ++F D  +       V+PL EQ   ESRK 
Sbjct: 231 DKE-KALYTISGQWSGSSKIIKANKKEES-RLFYDAARIPAEHLNVKPLEEQHPLESRKA 288

Query: 332 WKKVTDALAVRNHPVATEEKFQIEDHQRQLAKKRIEDGVEFHPKLFRRSKPGEDLDYCI 390
           W  V  A+ + +  +  + K ++E+ QR+L K+    G+ +  + F+      D DY +
Sbjct: 289 WYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGISWQRRWFK------DFDYSV 341


>5ZM8-A nrPDB
          Length = 455

 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 13/233 (5%)

Query: 61  GCDLTRITLPTFILEKKSMLERVTNQLQFPEFLLQAHSEKDPLKRFLYVMKWYLAGWHIA 120
           G +L++IT+P    E  S L+R+T  ++    + +A  +  PL+R   V  + ++     
Sbjct: 60  GLELSKITMPIAFNEPLSFLQRITEYMEHVYLIHRASCQPQPLERMQSVAAFAVSAVASQ 119

Query: 121 PKAVKKPLNPVLGEYFTAYWDLPNKQQAY-YISEQTSHHPPECAYFYMIPESSIRVDGVV 179
            +   KP NP+LGE +    +L  +   + +ISEQ SHHPP  A+            G +
Sbjct: 120 WERTGKPFNPLLGETY----ELIREDLGFRFISEQVSHHPPISAFHSEGLNHDFLFHGSI 175

Query: 180 IPKSRFLGNSSAAMMDGSTVLQFLDIKDGNGKPEKYVLTQPNVYVRGILFGKMRIE-LGD 238
            PK +F G S  A   G+  L+ L         E Y  T P   V  ++ GK+ IE  G 
Sbjct: 176 YPKLKFWGKSVEAEPRGTITLELLKHN------EAYTWTNPTCCVHNVIIGKLWIEQYGT 229

Query: 239 HMIIK-SPNFQADIEFKTKGYVFGTYDAIEGTVKDYDGNAYYEISGKWNDVMY 290
             I+      +  + FK  G        +EG ++D +    + I GKW + ++
Sbjct: 230 VEILNHRTGHKCVLHFKPCGLFGKELHKVEGHIQDKNKKKLFMIYGKWTECLW 282


>1M41-A nrPDB
          Length = 380

 Score = 32.0 bits (71), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 139 YWDLPNKQQAYYISEQTSHHPPECAYFYMIPESSIRVD--GVVIPKSRFLGNS---SAAM 193
           +W LP     +Y+  +    P +  Y   I +++ R+   GV+IP  R   ++   +A+M
Sbjct: 5   FWFLPTHGDGHYLGTEEGSRPVDHGYLQQIAQAADRLGYTGVLIPTGRSCEDAWLVAASM 64

Query: 194 MDGSTVLQFL 203
           +  +  L+FL
Sbjct: 65  IPVTQRLKFL 74


>4CAG-A nrPDB
          Length = 596

 Score = 30.0 bits (66), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 262 TYDAIEGTVKDYDGNAYYEISGKWNDVMYLKDLKQPRSSPKVFLDTHK 309
           TY A + +V D DG+  YEI  KW D    KD  Q   +  V +D +K
Sbjct: 118 TYSANDASVGDLDGDGQYEIILKW-DPSNSKDNSQDGYTGDVLIDAYK 164


>2PFT-A nrPDB
          Length = 571

 Score = 29.3 bits (64), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 4/43 (9%)

Query: 332 WKKVTDALAVRNHPVATEEKFQIEDHQRQLAKKRIE---DGVE 371
           W KVTD +A +N PV  +   ++ D +RQ+ K+R +   DG+E
Sbjct: 459 WLKVTDYIAEKNLPVF-QPGVKLRDKERQMIKERFKGFNDGLE 500


>2Z8S-A nrPDB
          Length = 591

 Score = 29.3 bits (64), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 262 TYDAIEGTVKDYDGNAYYEISGKWNDVMYLKDLKQPRSSPKVFLDTHK 309
           TY A + +V D DG+  YE+  KW D    KD  Q   +  V +D +K
Sbjct: 111 TYSANDASVGDVDGDGQYELILKW-DPSNSKDNSQDGYTGDVLIDAYK 157


>6BZC-A nrPDB
          Length = 555

 Score = 28.9 bits (63), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 49  NIILNIISQLRPGCDLTRITLPTFILEKKSMLERVTNQLQFPEFLLQAHSEKDPLKRFL 107
           N I  ++  L P   L  I   TF  +     E +TN L   E+ L+A  E+D  K F+
Sbjct: 195 NHIAEVVKNLNPETTLFIIASKTFTTQ-----ETMTNALSAKEWFLKAGKEEDVAKHFV 248


>2XI1-A nrPDB
          Length = 208

 Score = 28.1 bits (61), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 13/102 (12%)

Query: 18  SSFSSNKSSHSATKDQPIDTDDIDEDDESGHNIILNIISQLRPGCDLTRITLPTFILEKK 77
            + S +   H A      DT + DE++E G  +   +   LRP      + L  F+ EK 
Sbjct: 40  GAASQDLGRHGALTSSNTDTTNADEEEEVGFPVRPQV--PLRPMTYKGAVDLSFFLKEKG 97

Query: 78  SMLERVTNQLQFPEFLLQAHSEKDPLKRFLYVMKWYLAGWHI 119
            +           E L+ +  EK+ L  ++Y  + Y   W  
Sbjct: 98  GL-----------EGLVYSQREKEILDLWVYHTQGYFPDWQC 128


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

4B2Z-A nrPDB                                                          765   0.0  
1ZI7-A nrPDB                                                          379   e-105
5ZM8-A nrPDB                                                          332   1e-91

Sequences not found previously or not previously below threshold:

5OLJ-A nrPDB                                                           35   0.084
5NEC-A nrPDB                                                           35   0.087
5JP9-A nrPDB                                                           33   0.27 
5D98-A nrPDB                                                           32   0.60 
4V8P-BM nrPDB                                                          31   1.3  
4WQO-D nrPDB                                                           30   2.3  
2PFT-A nrPDB                                                           30   2.4  
5N4W-A nrPDB                                                           30   2.7  
3GHG-A nrPDB                                                           29   5.3  
4CBV-A nrPDB                                                           28   7.6  


CONVERGED!
>4B2Z-A nrPDB
          Length = 448

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 448/448 (100%), Positives = 448/448 (100%)

Query: 1   MGSKKLTVGSDSHRLSKSSFSSNKSSHSATKDQPIDTDDIDEDDESGHNIILNIISQLRP 60
           MGSKKLTVGSDSHRLSKSSFSSNKSSHSATKDQPIDTDDIDEDDESGHNIILNIISQLRP
Sbjct: 1   MGSKKLTVGSDSHRLSKSSFSSNKSSHSATKDQPIDTDDIDEDDESGHNIILNIISQLRP 60

Query: 61  GCDLTRITLPTFILEKKSMLERVTNQLQFPEFLLQAHSEKDPLKRFLYVMKWYLAGWHIA 120
           GCDLTRITLPTFILEKKSMLERVTNQLQFPEFLLQAHSEKDPLKRFLYVMKWYLAGWHIA
Sbjct: 61  GCDLTRITLPTFILEKKSMLERVTNQLQFPEFLLQAHSEKDPLKRFLYVMKWYLAGWHIA 120

Query: 121 PKAVKKPLNPVLGEYFTAYWDLPNKQQAYYISEQTSHHPPECAYFYMIPESSIRVDGVVI 180
           PKAVKKPLNPVLGEYFTAYWDLPNKQQAYYISEQTSHHPPECAYFYMIPESSIRVDGVVI
Sbjct: 121 PKAVKKPLNPVLGEYFTAYWDLPNKQQAYYISEQTSHHPPECAYFYMIPESSIRVDGVVI 180

Query: 181 PKSRFLGNSSAAMMDGSTVLQFLDIKDGNGKPEKYVLTQPNVYVRGILFGKMRIELGDHM 240
           PKSRFLGNSSAAMMDGSTVLQFLDIKDGNGKPEKYVLTQPNVYVRGILFGKMRIELGDHM
Sbjct: 181 PKSRFLGNSSAAMMDGSTVLQFLDIKDGNGKPEKYVLTQPNVYVRGILFGKMRIELGDHM 240

Query: 241 IIKSPNFQADIEFKTKGYVFGTYDAIEGTVKDYDGNAYYEISGKWNDVMYLKDLKQPRSS 300
           IIKSPNFQADIEFKTKGYVFGTYDAIEGTVKDYDGNAYYEISGKWNDVMYLKDLKQPRSS
Sbjct: 241 IIKSPNFQADIEFKTKGYVFGTYDAIEGTVKDYDGNAYYEISGKWNDVMYLKDLKQPRSS 300

Query: 301 PKVFLDTHKESPLRPKVRPLSEQGEYESRKLWKKVTDALAVRNHPVATEEKFQIEDHQRQ 360
           PKVFLDTHKESPLRPKVRPLSEQGEYESRKLWKKVTDALAVRNHPVATEEKFQIEDHQRQ
Sbjct: 301 PKVFLDTHKESPLRPKVRPLSEQGEYESRKLWKKVTDALAVRNHPVATEEKFQIEDHQRQ 360

Query: 361 LAKKRIEDGVEFHPKLFRRSKPGEDLDYCIYKNIPVDEDPEKQIRSILQIAPILPGQQFT 420
           LAKKRIEDGVEFHPKLFRRSKPGEDLDYCIYKNIPVDEDPEKQIRSILQIAPILPGQQFT
Sbjct: 361 LAKKRIEDGVEFHPKLFRRSKPGEDLDYCIYKNIPVDEDPEKQIRSILQIAPILPGQQFT 420

Query: 421 DKFFIPAFEKIKSQKKMIENEKQNPAKQ 448
           DKFFIPAFEKIKSQKKMIENEKQNPAKQ
Sbjct: 421 DKFFIPAFEKIKSQKKMIENEKQNPAKQ 448


>1ZI7-A nrPDB
          Length = 406

 Score =  379 bits (973), Expect = e-105,   Method: Composition-based stats.
 Identities = 107/384 (27%), Positives = 169/384 (44%), Gaps = 64/384 (16%)

Query: 70  PTFILEKKSMLERVTNQLQFPEFLLQ----------AHSEKDP------LKRFLYVMKWY 113
           P FIL   S+ E      + PE  L+           H   DP      L R L V KW+
Sbjct: 5   PPFILSPISLTEFSQYWAEHPELFLEPSFINDDNYKEHCLIDPEVESPELARMLAVTKWF 64

Query: 114 LAGW-------HIAPKAVKKPLNPVLGEYFTAYWD---LPNKQQAYYISEQTSHHPPECA 163
           ++         + +  + KKPLNP LGE F   W+    P   +   +SEQ SHHPP  A
Sbjct: 65  ISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLSEQVSHHPPVTA 124

Query: 164 YFYMIPESSIRVDGVVIPKSRFLGNSSAAMMDGSTVLQF----LDIKDGNGKPEKYVLTQ 219
           +     ++ +++ G    K+ F   + + M+   TV QF    LDIKD     E Y++T 
Sbjct: 125 FSIFNDKNKVKLQGYNQIKASF---TKSLML---TVKQFGHTMLDIKD-----ESYLVTP 173

Query: 220 PNVYVRGILFGKMRIEL-GDHMIIKSPNFQADIEFKTKGYVFGTYDAIEGTV-------K 271
           P +++ GIL     +EL G   I  S      IEF     V G  ++ +  +       K
Sbjct: 174 PPLHIEGILVASPFVELEGKSYIQSSTGLLCVIEFSG---VDGKKNSFKARIYKDSKDSK 230

Query: 272 DYDGNAYYEISGKWNDVMYLKDLKQPRSSPKVFLDTHKESPLRPKVRPLSEQGEYESRKL 331
           D +  A Y ISG+W+    +    +   S ++F D  +       V+PL EQ   ESRK 
Sbjct: 231 DKE-KALYTISGQWSGSSKIIKANKKEES-RLFYDAARIPAEHLNVKPLEEQHPLESRKA 288

Query: 332 WKKVTDALAVRNHPVATEEKFQIEDHQRQLAKKRIEDGVEFHPKLFRRSKPGEDLDYCIY 391
           W  V  A+ + +  +  + K ++E+ QR+L K+    G+ +  + F+      D DY + 
Sbjct: 289 WYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGISWQRRWFK------DFDYSVT 342

Query: 392 KN----IPVDEDPEKQIRSILQIA 411
                 +P  +D   ++ S L ++
Sbjct: 343 PEEGALVPEKDDTFLKLASALNLS 366


>5ZM8-A nrPDB
          Length = 455

 Score =  332 bits (852), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 146/376 (38%), Gaps = 70/376 (18%)

Query: 61  GCDLTRITLPTFILEKKSMLERVTNQLQFPEFLLQAHSEKDPLKRFLYVMKWYLAGWHIA 120
           G +L++IT+P    E  S L+R+T  ++    + +A  +  PL+R   V  + ++     
Sbjct: 60  GLELSKITMPIAFNEPLSFLQRITEYMEHVYLIHRASCQPQPLERMQSVAAFAVSAVASQ 119

Query: 121 PKAVKKPLNPVLGEYFTAYWDLPNKQQAY-YISEQTSHHPPECAYFYMIPESSIRVDGVV 179
            +   KP NP+LGE +    +L  +   + +ISEQ SHHPP  A+            G +
Sbjct: 120 WERTGKPFNPLLGETY----ELIREDLGFRFISEQVSHHPPISAFHSEGLNHDFLFHGSI 175

Query: 180 IPKSRFLGNSSAAMMDGSTVLQFLDIKDGNGKPEKYVLTQPNVYVRGILFGKMRIE-LGD 238
            PK +F G S  A   G+  L+ L         E Y  T P   V  ++ GK+ IE  G 
Sbjct: 176 YPKLKFWGKSVEAEPRGTITLELLKHN------EAYTWTNPTCCVHNVIIGKLWIEQYGT 229

Query: 239 HMIIK-SPNFQADIEFKTKGYVFGTYDAIEGTVKDYDGNAYYEISGKWNDVMY------- 290
             I+      +  + FK  G        +EG ++D +    + I GKW + ++       
Sbjct: 230 VEILNHRTGHKCVLHFKPCGLFGKELHKVEGHIQDKNKKKLFMIYGKWTECLWGIDPVSY 289

Query: 291 ------------LKDLKQPRSSPKVFLDTHKESPL---------------RPKVRP---- 319
                       L+  K    S K   D   + P+               R   RP    
Sbjct: 290 ESFKKQERRGDHLRKAKLDEDSGKADSDVADDVPVAQETVQVIPGSKLLWRINTRPPNSA 349

Query: 320 ------------------LSEQGEYESRKLWKKVTDALAVRNHPVATEEKFQIEDHQRQL 361
                             + +       +L   +   +   N  +A++EK ++E+ QR+ 
Sbjct: 350 QMYNFTSFTVSLNELETGMEKTLPPTDCRLRPDIRG-MENGNMDLASQEKERLEEKQREA 408

Query: 362 AKKRIEDGVEFHPKLF 377
            ++R ++  E+  + F
Sbjct: 409 RRERAKEEAEWQTRWF 424


>5OLJ-A nrPDB
          Length = 723

 Score = 34.7 bits (78), Expect = 0.084,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 91/271 (33%), Gaps = 45/271 (16%)

Query: 176 DGVVIPKSRFLGNSSAAMMDGSTVLQFLDIKDGNGKPEKYVLTQPNVYVRGILFGKMRIE 235
           DG + P+  F  N+          L  + +       + Y +   ++ V  ++   M   
Sbjct: 275 DGYI-PRIAFTDNADE--------LAVMTLNRLQNDFKMYYVHPKSL-VPKLILQDMNKR 324

Query: 236 LGDHMIIKSPNFQADIEFKTKGYVF--GTYDAIEGTVKDYDGNAYY---EISGKWNDVMY 290
             D   I++      ++F   G        D     +  YD          SG W+    
Sbjct: 325 YVDSDWIQA------LKFTAGGGFAYVSEKDGF-AHIYLYDNKGVMHRRITSGNWD---- 373

Query: 291 LKDLKQPRSSPKVFLDTHKESPLRPKVRPLSEQGEYESRKLWKKVTDALAVRNHP----- 345
           +  L    +S  VF  + +ESP+R  V  +  +G      L     DAL   N+      
Sbjct: 374 VTKLYGVDASGTVFYQSAEESPIRRAVYAIDAKGRKTKLSLNVGTNDALFSGNYAYYINT 433

Query: 346 ------------VATEEKFQIEDHQRQLAKKRIEDGVEFHPKLFRRSKPGEDLDYCIYKN 393
                         ++   ++   +  +A +       ++PK F   K    L+   +  
Sbjct: 434 YSSAATPTVVSVFRSKGAKELRTLEDNVALRERLKAYRYNPKEFTIIKTQSALELNAWIV 493

Query: 394 IPVDEDPEKQIRSILQIAPILP-GQQFTDKF 423
            P+D DP +    +L +    P  QQ  D++
Sbjct: 494 KPIDFDPSRHY-PVLMVQYSGPNSQQVLDRY 523


>5NEC-A nrPDB
          Length = 741

 Score = 34.7 bits (78), Expect = 0.087,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 5/156 (3%)

Query: 114 LAGWHIAPKAV---KKPLNPVLGEYFTAYWDLPNKQQAYYISEQTSHHPPECAYFYMIPE 170
           ++ W +AP        P    +  Y     D P+    Y  S   S H P+         
Sbjct: 208 VSRWGVAPSLTFGLGSPTRVTVSHYHLESDDTPDSGIPYAKSSDRSKHNPDKPVNVDR-G 266

Query: 171 SSIRVDGVVIPKSRFLGNSSAAMMDGSTVLQFLDIKDGNGKPEKYVLTQPNVYVRGILFG 230
           +   + G    KSR   ++     D +  L   +        + Y+ TQP+     I  G
Sbjct: 267 NFYGLTGRDFQKSRIDTSTITVEHDLTDSLTIRNTSRYGNSHQDYLWTQPDDSQGNINNG 326

Query: 231 KMRIELGDHMIIKSPNFQADIEFKTKGYVFGTYDAI 266
            +     ++ +  +       +   + Y+ G  ++ 
Sbjct: 327 SVW-RRQNNRVSTTTTAVNQTDLFGEFYLGGFKNSF 361


>5JP9-A nrPDB
          Length = 325

 Score = 33.2 bits (74), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 8/112 (7%)

Query: 257 GYVFGTYDAIEGTVKDYDGNAYYEISGKWNDVMYLKDLKQPRSSPKVFLDTHKESPLRPK 316
           G   GTY  + G+V  YD +A      +W +   + D   P   P+       +    P 
Sbjct: 198 GLGIGTYHHVVGSVHIYDSDA------RWAE--RVLDAATPDGGPRPGFPAMPDGDNWPH 249

Query: 317 VRPLSEQGEYESRKLWKKVTDALAVRNHPVATEEKFQIEDHQRQLAKKRIED 368
           VR + E  E       +   DAL   + P   +    + +  RQ+  +   D
Sbjct: 250 VRRVLEWEERLRTNAARLSADALDALDLPAYWKHVVALFEAHRQVRHEDTPD 301


>5D98-A nrPDB
          Length = 709

 Score = 32.0 bits (71), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 304 FLDTHKESPLRPKVRPLSEQGEYESRKLWKKVTDALAVR 342
           F      S +RPK +PL  +     + LW ++  A+A R
Sbjct: 289 FFKKGNLSAIRPKDKPLQGKYPIHYKNLWNQIKAAIADR 327


>4V8P-BM nrPDB
          Length = 301

 Score = 30.9 bits (68), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 9/104 (8%)

Query: 258 YVFGTYDAIEGTVKDYDGNAYYEISGKWNDVMYLKDLKQPRSSPKVFLDTH---KESPLR 314
                 DA    +K     A+ +   KW+  +   +  +  S  K+F   H   +++P R
Sbjct: 204 IFGKHIDAYMKHLKGQSNEAFQKQFSKWSKTL---EAAKVDSVEKLFTKVHAEIRKNPER 260

Query: 315 PKVRPLSEQGEYESRKLWKKVTDALAVRNHPVATEEKFQIEDHQ 358
            K    +++ + + +K +     A   ++     + KFQ+   Q
Sbjct: 261 VKSTKKNDKPKRDHKKFYPTKLTAAQRKDR---VKTKFQLALSQ 301


>4WQO-D nrPDB
          Length = 186

 Score = 30.1 bits (66), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 346 VATEEKFQIEDHQRQLAKK----RIEDGVEFHPKLFRRSKPGEDLDYCIYK 392
           + TE K  +E+H R L K+      +  V +H      SK G D   C+Y+
Sbjct: 80  LYTETKIFLENHVRHLHKRVLESEEQVLVMYHRYWEEYSK-GADYMDCLYR 129


>2PFT-A nrPDB
          Length = 571

 Score = 29.7 bits (65), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 286 NDVMYLKDLKQPRSSPKVFLDTHKESPLRPKVRPLSEQGEYESRKLWKKVTDALAVRNHP 345
           N+  Y+    +     ++   T K +  R     + +Q +   R  W KVTD +A +N P
Sbjct: 415 NNYNYILKSLEKSELIQLVAVTQK-TAERSYREHIEQQIQTYQR-SWLKVTDYIAEKNLP 472

Query: 346 VATEEKFQIEDHQRQLAKKRIE---DGVE 371
           V  +   ++ D +RQ+ K+R +   DG+E
Sbjct: 473 VF-QPGVKLRDKERQMIKERFKGFNDGLE 500


>5N4W-A nrPDB
          Length = 748

 Score = 29.7 bits (65), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 346 VATEEKFQIEDHQRQLAKK----RIEDGVEFHPKLFRRSKPGEDLDYCIYK 392
           + TE K  +E+H R L K+      +  V +H      SK G D   C+Y+
Sbjct: 60  LYTETKIFLENHVRHLHKRVLESEEQVLVMYHRYWEEYSK-GADYMDCLYR 109


>3GHG-A nrPDB
          Length = 562

 Score = 28.6 bits (62), Expect = 5.3,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 128 LNPVLGEYFTAYWDLPNKQQAYYIS--EQTSHHPPECAYFYMIPESSI 173
            +P+LGE F +  +    +   + +  E +SHHP    +      SS 
Sbjct: 514 FSPMLGE-FVSETESRGSESGIFTNTKESSSHHPGIAEFPSRGKSSSY 560


>4CBV-A nrPDB
          Length = 256

 Score = 28.2 bits (61), Expect = 7.6,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 232 MRIELGDHMIIKSPNFQADIEFKTKGY---VFGTYDAIEGTVKDYDGNAYYEISGKWNDV 288
           ++I   D + I++      +    K +    +GT   I+   KD     +Y     +   
Sbjct: 151 LKIPYHDILYIETTGVSHKLRIIGKNFAKEFYGTMTDIQE--KDKHTQRFYSPHKSFLVN 208

Query: 289 MYLKDLKQPRSSPKVFLDTHKESPLRPKVRPLSEQGEYESRK 330
           +        ++   VF + H+    R K+R L +  E +S+K
Sbjct: 209 IGNIREIDRKNLEIVFYEDHRCPISRLKIRKLKDILEKKSQK 250


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.310    0.127    0.342 

Lambda     K      H
   0.267   0.0394    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,172,494
Number of Sequences: 36641
Number of extensions: 699697
Number of successful extensions: 1879
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1844
Number of HSP's gapped (non-prelim): 39
length of query: 448
length of database: 10,336,785
effective HSP length: 100
effective length of query: 348
effective length of database: 6,672,685
effective search space: 2322094380
effective search space used: 2322094380
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 61 (28.2 bits)