BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q02083
         (359 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

6DXW-A nrPDB                                                          679   0.0  
5U81-A nrPDB                                                          181   3e-46
5U84-A nrPDB                                                          174   4e-44
4LK4-A nrPDB                                                           33   0.17 
2HEZ-A nrPDB                                                           29   3.0  
3C2U-A nrPDB                                                           29   3.5  
5Y77-A nrPDB                                                           28   5.7  
1YI7-A nrPDB                                                           28   7.1  

>6DXW-A nrPDB
          Length = 341

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/331 (99%), Positives = 329/331 (99%)

Query: 29  SPPAAPRFNVSLDSVPELRWLPVLRHYDLDLVRAAMAQVIGDRVPKWVHVLIGKVVLELE 88
           SPPAAPRFNVSLDSVPELRWLPVLRHYDLDLVRAAMAQVIGDRVPKWVHVLIGKVVLELE
Sbjct: 11  SPPAAPRFNVSLDSVPELRWLPVLRHYDLDLVRAAMAQVIGDRVPKWVHVLIGKVVLELE 70

Query: 89  RFLPQPFTGEIRGMCDFMNLSLADCLLVNLAYESSVFCTSIVAQDSRGHIYHGRNLDYPF 148
           RFLPQPFTGEIRGMCDFMNLSLAD LLVNLAYESSVF TSIVAQDSRGHIYHGRNLDYPF
Sbjct: 71  RFLPQPFTGEIRGMCDFMNLSLADALLVNLAYESSVFATSIVAQDSRGHIYHGRNLDYPF 130

Query: 149 GNVLRKLTVDVQFLKNGQIAFTGTTFIGYVGLWTGQSPHKFTVSGDERDKGWWWENAIAA 208
           GNVLRKLTVDVQFLKNGQIAFTGTTFIGYVGLWTGQSPHKFTVSGDERDKGWWWENAIAA
Sbjct: 131 GNVLRKLTVDVQFLKNGQIAFTGTTFIGYVGLWTGQSPHKFTVSGDERDKGWWWENAIAA 190

Query: 209 LFRRHIPVSWLIRATLSESENFEAAVGKLAKTPLIADVYYIVGGTSPREGVVITRNRDGP 268
           LFRRHIPVSWLIRATLSESENFEAAVGKLAKTPLIADVYYIVGGTSPREGVVITRNRDGP
Sbjct: 191 LFRRHIPVSWLIRATLSESENFEAAVGKLAKTPLIADVYYIVGGTSPREGVVITRNRDGP 250

Query: 269 ADIWPLDPLNGAWFRVETNYDHWKPAPKEDDRRTSAIKALNATGQANLSLEALFQILSVV 328
           ADIWPLDPLNGAWFRVETNYDHWKPAPKEDDRRTSAIKALNATGQANLSLEALFQILSVV
Sbjct: 251 ADIWPLDPLNGAWFRVETNYDHWKPAPKEDDRRTSAIKALNATGQANLSLEALFQILSVV 310

Query: 329 PVYNNFTIYTTVMSAGSPDKYMTRIRNPSRK 359
           PVYNNFTIYTTVMSAGSPDKYMTRIRNPSRK
Sbjct: 311 PVYNNFTIYTTVMSAGSPDKYMTRIRNPSRK 341


>5U81-A nrPDB
          Length = 384

 Score =  181 bits (460), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 114/362 (31%), Positives = 179/362 (49%), Gaps = 39/362 (10%)

Query: 26  SAASPPAAPRF-------NVSLDSVPELRWLPVLRHYDLDLVRAAMAQVIGDRVPKWVHV 78
            +  PP+ P +        ++LD  P  RW      ++L + +  M ++I +     V+ 
Sbjct: 22  KSTYPPSGPTYRGPVPWYTINLDLPPYKRW------HELMVDKGPMLKIIVNSFKNMVNT 75

Query: 79  LI--GKVVLELERFLPQ-------PFTGEIRGMCDFMNLSLADCLLVNLAYESSVFCTSI 129
            +  GKV+  +++ LP        P+  E++G+ D   + L + +  N+ YE     TSI
Sbjct: 76  FVPSGKVMQMVDQKLPDLLGQFSGPYEEEMKGIADVTEIPLGEIISFNIFYELFTMATSI 135

Query: 130 VAQDSRGHIYHGRNLDYPF-------------GNVLRKLTVDVQFLKNGQIAFTGTTFIG 176
           + +D +GH+ H RN+D+                  L+ LTV++ F +N +  F  T+F G
Sbjct: 136 ITEDKKGHLLHVRNMDFGIFLGWNINNNTWVITEELKPLTVNLDFQRNSKTVFKATSFAG 195

Query: 177 YVGLWTGQSPHKFTVSGDERDKGWWWENAIAALFRRHIPVSWL---IRATLSESENFEAA 233
           YVG+ TG  P +F+++ +ER         +          SW+    R+ L  + ++E A
Sbjct: 196 YVGMLTGFKPGQFSLTLNERFSMNGGYLGLLEWILGKKDASWIGFITRSVLENATSYEEA 255

Query: 234 VGKLAKTPLIADVYYIVGGTSPREGVVITRNRDGPADIWPLDPLNGAWFRVETNYDHWKP 293
              LAKT L+A  Y+I+GG    EG VITR R    DI+ LDP  G W+ V+TNYD WK 
Sbjct: 256 KNILAKTKLLAPAYFILGGNQSGEGCVITRERKDSLDIYELDPKQGRWYVVQTNYDRWKN 315

Query: 294 APKEDDRRTSAIKALNATGQANLSLEALFQILSVVPVYNNFTIYTTVMSAGSPDKYMTRI 353
               DDRRT A   L  T Q +LS   L+ ILS  PV N  T++T +M   + + Y   +
Sbjct: 316 PLFLDDRRTPAQTCLKRTTQESLSFATLYDILSTKPVLNKLTVFTALMDV-TKNHYEAYL 374

Query: 354 RN 355
           R+
Sbjct: 375 RD 376


>5U84-A nrPDB
          Length = 384

 Score =  174 bits (442), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/354 (32%), Positives = 182/354 (51%), Gaps = 37/354 (10%)

Query: 33  APRFNVSLDSVPELRWLPVLRHYDLDLVRAAMAQVIGDRVPKWVHVL--IGKVVLELERF 90
            P + ++LD  P  RW      ++L + +A   +VI + +   ++     GK+V  +++ 
Sbjct: 36  VPWYTINLDLPPYKRW------HELMVDKAPALKVIVNYLKNMINAFEPSGKIVQLVDQK 89

Query: 91  LPQ-------PFTGEIRGMCDFMNLSLADCLLVNLAYESSVFCTSIVAQDSRGHIYHGRN 143
           LP        PF  E++G+     + L + +L N+ YE     TSI+ +D  GH+ H RN
Sbjct: 90  LPGLLGSFPGPFEEEMKGIAAVTEIPLGEIILFNIFYEFFTIATSIITEDKEGHLLHARN 149

Query: 144 LDYPFG-----NV----------LRKLTVDVQFLKNGQIAFTGTTFIGYVGLWTGQSPHK 188
           +D  FG     NV          L+ LTV++ F +N +  F    F GYVG+ TG  P  
Sbjct: 150 MD--FGVFLGWNVNNNTWVVTEELKPLTVNLDFQRNSKTVFKAAGFAGYVGMLTGFKPGL 207

Query: 189 FTVSGDER--DKGWWWENAIAALFRRHIP-VSWLIRATLSESENFEAAVGKLAKTPLIAD 245
           F+++ +ER    G +       L ++    + ++IR+ L  S ++E A   L K+ ++A 
Sbjct: 208 FSLTLNERFSTNGGFMGVIEWILGKKDAKWIGFIIRSVLENSTSYEEAKTILTKSKILAP 267

Query: 246 VYYIVGGTSPREGVVITRNRDGPADIWPLDPLNGAWFRVETNYDHWKPAPKEDDRRTSAI 305
            Y+I+GG+   EG VITR+R    DI+ LDP  G W+ V+TNYD WK     D+RRT A 
Sbjct: 268 AYFILGGSKSGEGCVITRDRVQSLDIYELDPKQGIWYVVQTNYDRWKNPFFLDNRRTPAK 327

Query: 306 KALNATGQANLSLEALFQILSVVPVYNNFTIYTTVM--SAGSPDKYMTRIRNPS 357
             LN T Q N+S   ++ +LS  PV N  T+YT ++  + G  + Y+    +P 
Sbjct: 328 MCLNRTTQENISFATMYDVLSTKPVLNKLTVYTALIDVTKGQFETYLRDCPDPC 381


>4LK4-A nrPDB
          Length = 357

 Score = 33.5 bits (75), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 14/60 (23%)

Query: 9   RPGLPSLLLLLLAGAGLSAASPPAAPRFNVSLDSVPELRWLPVLRHYDLDLVRAAMAQVI 68
           R  LP+L  L +AG G++  S P  P+F             P+L+  D+DLV  ++ Q++
Sbjct: 126 RTSLPALTPLTVAGWGITVQSKP--PQFT------------PILQEVDVDLVSQSLCQIV 171


>2HEZ-A nrPDB
          Length = 316

 Score = 29.3 bits (64), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 126 CTSIVAQDSRGHIYHGRNLDYPF 148
           CT +   D  G+ Y GRNLD+ F
Sbjct: 1   CTGVRFSDDEGNTYFGRNLDWSF 23


>3C2U-A nrPDB
          Length = 538

 Score = 28.9 bits (63), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 243 IADVYYIV---GGTSPREGVVITRNR--DGPADIWPLDPLNGAWFRVE 285
           I D+YY++   GGT+ +    I R++   GP +I P  PL  AW  V 
Sbjct: 193 INDMYYLMTAEGGTTYQHSETIARSKTIHGPYEIQPDYPLLSAWKEVH 240


>5Y77-A nrPDB
          Length = 473

 Score = 28.1 bits (61), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 16/64 (25%)

Query: 18  LLLAGAGLSAASPPAAPRFNVSLDSVPELRWLPVLRHYDLDLVRAAMAQVIGDRVPKWVH 77
           +LL GA  + AS      FN+ LDSV            D    R  ++ V G+R+ K  H
Sbjct: 118 ILLDGAEAAGASI----HFNLGLDSV------------DFARQRLTLSNVSGERLEKRFH 161

Query: 78  VLIG 81
           +LIG
Sbjct: 162 LLIG 165


>1YI7-A nrPDB
          Length = 542

 Score = 27.7 bits (60), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 243 IADVYYIV---GGTSPR--EGVVITRNRDGPADIWPLDPLNGAW 281
           I D YY+    GGT+    E V  ++N DGP +I P  PL  +W
Sbjct: 194 IGDYYYLFTAEGGTTYEHSETVARSKNIDGPYEIDPEYPLLTSW 237


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

6DXW-A nrPDB                                                          580   e-166
5U81-A nrPDB                                                          500   e-142
5U84-A nrPDB                                                          496   e-141

Sequences not found previously or not previously below threshold:

4N7R-A nrPDB                                                           32   0.30 
4ASK-A nrPDB                                                           31   0.74 
2XXZ-A nrPDB                                                           30   1.4  
4EYU-A nrPDB                                                           30   2.4  
3MMT-A nrPDB                                                           29   2.9  
4HKF-A nrPDB                                                           29   3.9  


CONVERGED!
>6DXW-A nrPDB
          Length = 341

 Score =  580 bits (1496), Expect = e-166,   Method: Composition-based stats.
 Identities = 329/331 (99%), Positives = 329/331 (99%)

Query: 29  SPPAAPRFNVSLDSVPELRWLPVLRHYDLDLVRAAMAQVIGDRVPKWVHVLIGKVVLELE 88
           SPPAAPRFNVSLDSVPELRWLPVLRHYDLDLVRAAMAQVIGDRVPKWVHVLIGKVVLELE
Sbjct: 11  SPPAAPRFNVSLDSVPELRWLPVLRHYDLDLVRAAMAQVIGDRVPKWVHVLIGKVVLELE 70

Query: 89  RFLPQPFTGEIRGMCDFMNLSLADCLLVNLAYESSVFCTSIVAQDSRGHIYHGRNLDYPF 148
           RFLPQPFTGEIRGMCDFMNLSLAD LLVNLAYESSVF TSIVAQDSRGHIYHGRNLDYPF
Sbjct: 71  RFLPQPFTGEIRGMCDFMNLSLADALLVNLAYESSVFATSIVAQDSRGHIYHGRNLDYPF 130

Query: 149 GNVLRKLTVDVQFLKNGQIAFTGTTFIGYVGLWTGQSPHKFTVSGDERDKGWWWENAIAA 208
           GNVLRKLTVDVQFLKNGQIAFTGTTFIGYVGLWTGQSPHKFTVSGDERDKGWWWENAIAA
Sbjct: 131 GNVLRKLTVDVQFLKNGQIAFTGTTFIGYVGLWTGQSPHKFTVSGDERDKGWWWENAIAA 190

Query: 209 LFRRHIPVSWLIRATLSESENFEAAVGKLAKTPLIADVYYIVGGTSPREGVVITRNRDGP 268
           LFRRHIPVSWLIRATLSESENFEAAVGKLAKTPLIADVYYIVGGTSPREGVVITRNRDGP
Sbjct: 191 LFRRHIPVSWLIRATLSESENFEAAVGKLAKTPLIADVYYIVGGTSPREGVVITRNRDGP 250

Query: 269 ADIWPLDPLNGAWFRVETNYDHWKPAPKEDDRRTSAIKALNATGQANLSLEALFQILSVV 328
           ADIWPLDPLNGAWFRVETNYDHWKPAPKEDDRRTSAIKALNATGQANLSLEALFQILSVV
Sbjct: 251 ADIWPLDPLNGAWFRVETNYDHWKPAPKEDDRRTSAIKALNATGQANLSLEALFQILSVV 310

Query: 329 PVYNNFTIYTTVMSAGSPDKYMTRIRNPSRK 359
           PVYNNFTIYTTVMSAGSPDKYMTRIRNPSRK
Sbjct: 311 PVYNNFTIYTTVMSAGSPDKYMTRIRNPSRK 341


>5U81-A nrPDB
          Length = 384

 Score =  500 bits (1288), Expect = e-142,   Method: Composition-based stats.
 Identities = 114/366 (31%), Positives = 178/366 (48%), Gaps = 40/366 (10%)

Query: 26  SAASPPAAP-------RFNVSLDSVPELRWLPVLRHYDLDLVRAAMAQVIGDRVPKWVHV 78
            +  PP+ P        + ++LD  P  RW      ++L + +  M ++I +     V+ 
Sbjct: 22  KSTYPPSGPTYRGPVPWYTINLDLPPYKRW------HELMVDKGPMLKIIVNSFKNMVNT 75

Query: 79  LI--GKVVLELERFLPQ-------PFTGEIRGMCDFMNLSLADCLLVNLAYESSVFCTSI 129
            +  GKV+  +++ LP        P+  E++G+ D   + L + +  N+ YE     TSI
Sbjct: 76  FVPSGKVMQMVDQKLPDLLGQFSGPYEEEMKGIADVTEIPLGEIISFNIFYELFTMATSI 135

Query: 130 VAQDSRGHIYHGRNLDYPF-------------GNVLRKLTVDVQFLKNGQIAFTGTTFIG 176
           + +D +GH+ H RN+D+                  L+ LTV++ F +N +  F  T+F G
Sbjct: 136 ITEDKKGHLLHVRNMDFGIFLGWNINNNTWVITEELKPLTVNLDFQRNSKTVFKATSFAG 195

Query: 177 YVGLWTGQSPHKFTVSGDERDKGWWWENAIAALFRRHIPVSWL---IRATLSESENFEAA 233
           YVG+ TG  P +F+++ +ER         +          SW+    R+ L  + ++E A
Sbjct: 196 YVGMLTGFKPGQFSLTLNERFSMNGGYLGLLEWILGKKDASWIGFITRSVLENATSYEEA 255

Query: 234 VGKLAKTPLIADVYYIVGGTSPREGVVITRNRDGPADIWPLDPLNGAWFRVETNYDHWKP 293
              LAKT L+A  Y+I+GG    EG VITR R    DI+ LDP  G W+ V+TNYD WK 
Sbjct: 256 KNILAKTKLLAPAYFILGGNQSGEGCVITRERKDSLDIYELDPKQGRWYVVQTNYDRWKN 315

Query: 294 APKEDDRRTSAIKALNATGQANLSLEALFQILSVVPVYNNFTIYTTVMS--AGSPDKYMT 351
               DDRRT A   L  T Q +LS   L+ ILS  PV N  T++T +M       + Y+ 
Sbjct: 316 PLFLDDRRTPAQTCLKRTTQESLSFATLYDILSTKPVLNKLTVFTALMDVTKNHYEAYLR 375

Query: 352 RIRNPS 357
              +P 
Sbjct: 376 DCPDPC 381


>5U84-A nrPDB
          Length = 384

 Score =  496 bits (1278), Expect = e-141,   Method: Composition-based stats.
 Identities = 112/366 (30%), Positives = 182/366 (49%), Gaps = 40/366 (10%)

Query: 26  SAASPPAAP-------RFNVSLDSVPELRWLPVLRHYDLDLVRAAMAQVIGDRVPKWVHV 78
            +  PP+ P        + ++LD  P  RW      ++L + +A   +VI + +   ++ 
Sbjct: 22  KSTYPPSGPTYRGPVPWYTINLDLPPYKRW------HELMVDKAPALKVIVNYLKNMINA 75

Query: 79  L--IGKVVLELERFLPQ-------PFTGEIRGMCDFMNLSLADCLLVNLAYESSVFCTSI 129
               GK+V  +++ LP        PF  E++G+     + L + +L N+ YE     TSI
Sbjct: 76  FEPSGKIVQLVDQKLPGLLGSFPGPFEEEMKGIAAVTEIPLGEIILFNIFYEFFTIATSI 135

Query: 130 VAQDSRGHIYHGRNLDYPF-------------GNVLRKLTVDVQFLKNGQIAFTGTTFIG 176
           + +D  GH+ H RN+D+                  L+ LTV++ F +N +  F    F G
Sbjct: 136 ITEDKEGHLLHARNMDFGVFLGWNVNNNTWVVTEELKPLTVNLDFQRNSKTVFKAAGFAG 195

Query: 177 YVGLWTGQSPHKFTVSGDERD--KGWWWENAIAALFRRHIP-VSWLIRATLSESENFEAA 233
           YVG+ TG  P  F+++ +ER    G +       L ++    + ++IR+ L  S ++E A
Sbjct: 196 YVGMLTGFKPGLFSLTLNERFSTNGGFMGVIEWILGKKDAKWIGFIIRSVLENSTSYEEA 255

Query: 234 VGKLAKTPLIADVYYIVGGTSPREGVVITRNRDGPADIWPLDPLNGAWFRVETNYDHWKP 293
              L K+ ++A  Y+I+GG+   EG VITR+R    DI+ LDP  G W+ V+TNYD WK 
Sbjct: 256 KTILTKSKILAPAYFILGGSKSGEGCVITRDRVQSLDIYELDPKQGIWYVVQTNYDRWKN 315

Query: 294 APKEDDRRTSAIKALNATGQANLSLEALFQILSVVPVYNNFTIYTTVMS--AGSPDKYMT 351
               D+RRT A   LN T Q N+S   ++ +LS  PV N  T+YT ++    G  + Y+ 
Sbjct: 316 PFFLDNRRTPAKMCLNRTTQENISFATMYDVLSTKPVLNKLTVYTALIDVTKGQFETYLR 375

Query: 352 RIRNPS 357
              +P 
Sbjct: 376 DCPDPC 381


>4N7R-A nrPDB
          Length = 472

 Score = 32.3 bits (72), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%)

Query: 298 DDRRTSAIKALNATGQANLSLEALFQILSVVPVYNNFTIYTTVMSAGSPDKYMTRIRNPS 357
           +DR   A++A     + +   EA    L  VP       Y   +     +K M+++ +  
Sbjct: 342 EDRMRKAMEAQTIITEESTQFEAWRDSLETVPTIKKLRAYAERIRVAELEKCMSKMGDDI 401

Query: 358 RK 359
            K
Sbjct: 402 NK 403


>4ASK-A nrPDB
          Length = 510

 Score = 31.2 bits (69), Expect = 0.74,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 15/101 (14%)

Query: 26  SAASPPAAP--------RFNVSLDSVPELRWLPVLRHYDLDLVRAAM-AQVIGDRVPKWV 76
           +   P +AP        +F  ++D     RW P L+  +L  + A M     G+ +    
Sbjct: 171 TGTPPSSAPDPKNHHIIKFGTNIDLSDAKRWKPQLQ--ELLKLPAFMRVTSTGNMLSHVG 228

Query: 77  HVLIGKVVLELERFLPQ---PFTGEIRGMCDF-MNLSLADC 113
           H ++G   ++L   +P    P   E    C   +N+   DC
Sbjct: 229 HTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDC 269


>2XXZ-A nrPDB
          Length = 332

 Score = 30.0 bits (66), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 15/101 (14%)

Query: 26  SAASPPAAP--------RFNVSLDSVPELRWLPVLRHYDLDLVRAAM-AQVIGDRVPKWV 76
           +   P +AP        +F  ++D     RW P L+  +L  + A M     G+ +    
Sbjct: 137 TGTPPSSAPDPKNHHIIKFGTNIDLSDAKRWKPQLQ--ELLKLPAFMRVTSTGNMLSHVG 194

Query: 77  HVLIGKVVLELERFLPQ---PFTGEIRGMCDF-MNLSLADC 113
           H ++G   ++L   +P    P   E    C   +N+   DC
Sbjct: 195 HTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDC 235


>4EYU-A nrPDB
          Length = 486

 Score = 29.7 bits (65), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 35  RFNVSLDSVPELRWLPVLRHYDLDLVRAAM-AQVIGDRVPKWVHVLIGKVVLELERFLPQ 93
           +F  ++D     RW P L+  +L  + A M     G+ +    H ++G   ++L   +P 
Sbjct: 170 KFGTNIDLSDAKRWKPQLQ--ELLKLPAFMRVTSTGNMLSHVGHTILGMNTVQLYMKVPG 227

Query: 94  ---PFTGEIRGMCDF-MNLSLADC 113
              P   E    C   +N+   DC
Sbjct: 228 SRTPGHQENNNFCSVNINIGPGDC 251


>3MMT-A nrPDB
          Length = 347

 Score = 29.3 bits (64), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 281 WFRVETNYDHWKPAPKEDDRRTSAIKALNATGQANLSLEALFQILSVVPVYNNFTIYTTV 340
           ++ +   +  W+     D +      A++   QA     AL Q   +VP+         +
Sbjct: 131 YYTLGARFAKWRAVIAIDAQTLPTRGAISQNAQALARYAALCQEAGLVPIVEP----EVL 186

Query: 341 MSAGSPDKYMTRI 353
           M   S    +TR 
Sbjct: 187 MDGPSRQHSITRC 199


>4HKF-A nrPDB
          Length = 191

 Score = 28.9 bits (63), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 303 SAIKALNATGQANLSL-EALFQILSVVPVYNNFTIYTTVMSAGS 345
            A  A +      LS  E  + + + VP  NNF ++     + S
Sbjct: 147 PAQMAYDRPSPKFLSFLEKRYDLRNSVPQVNNFVVFAGFFQSRS 190


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.312    0.134    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,160,378
Number of Sequences: 36641
Number of extensions: 572964
Number of successful extensions: 1330
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1302
Number of HSP's gapped (non-prelim): 18
length of query: 359
length of database: 10,336,785
effective HSP length: 98
effective length of query: 261
effective length of database: 6,745,967
effective search space: 1760697387
effective search space used: 1760697387
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 60 (27.7 bits)