BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P97612 (579 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 6MRG-A nrPDB 1118 0.0 5H6S-A nrPDB 109 3e-24 3H0L-A nrPDB 102 4e-22 3KFU-E nrPDB 92 6e-19 6C6G-A nrPDB 89 7e-18 6DII-A nrPDB 85 7e-17 4WJ3-A nrPDB 84 2e-16 2G5H-A nrPDB 83 4e-16 2DC0-A nrPDB 83 4e-16 3AL0-A nrPDB 70 3e-12 1O9P-A nrPDB 68 1e-11 4YJI-A nrPDB 64 2e-10 3A2Q-A nrPDB 64 2e-10 3A1K-A nrPDB 63 3e-10 4N0I-A nrPDB 52 6e-07 4GYR-A nrPDB 46 4e-05 3T7C-A nrPDB 32 0.67 >6MRG-A nrPDB Length = 580 Score = 1118 bits (2892), Expect = 0.0, Method: Compositional matrix adjust. Identities = 542/548 (98%), Positives = 546/548 (99%) Query: 32 TGRQKARGAATRARQKQRASLETMDKAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGEL 91 TGRQKARGAATRARQKQRASLETMDKAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGEL Sbjct: 33 TGRQKARGAATRARQKQRASLETMDKAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGEL 92 Query: 92 SPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHD 151 SPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHD Sbjct: 93 SPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHD 152 Query: 152 STLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSS 211 STLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM S+DCSNPLFGQTMNPWKSS Sbjct: 153 STLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSS 212 Query: 212 KSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVY 271 KSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVY Sbjct: 213 KSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVY 272 Query: 272 GQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYE 331 GQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYE Sbjct: 273 GQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYE 332 Query: 332 TDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSAGGLFSDGGRSFLQN 391 TDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLS GGLFSDGGRSFLQN Sbjct: 333 TDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSTGGLFSDGGRSFLQN 392 Query: 392 FKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNSMRPRSAEKLWKLQHEI 451 FKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLN+MRPRSAEKLWKLQHEI Sbjct: 393 FKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEI 452 Query: 452 EMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRATGAISYTVLYNCLDFPAGVVPVTT 511 EMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRATGA+SYT+LYNCLDFPAGVVPVTT Sbjct: 453 EMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRATGAVSYTMLYNCLDFPAGVVPVTT 512 Query: 512 VTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQL 571 VTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQL Sbjct: 513 VTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQL 572 Query: 572 MTPQKQPS 579 MTPQKQPS Sbjct: 573 MTPQKQPS 580 >5H6S-A nrPDB Length = 481 Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 9/226 (3%) Query: 81 QLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQ-------GL 133 ++ ++ G S E V +L + E N TN D + ++A + G Sbjct: 33 EIRARISEGAASREEVVHEHLDRIDEFNALTNSFVELRADQVLEEARAADREFGSTLGGP 92 Query: 134 LYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLS 193 L GVP+S+K+ +S G T GL +N + D V L+ G + H +P + Sbjct: 93 LDGVPLSIKDSYSVAGLHRTDGLPVNADVLDAQDDVATARLRAAGGLVLGHAGIPDLCIR 152 Query: 194 FDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICG 253 ++ + L+G NP S++ GGSSGG+ A + +G + +GLG D+GGSIR P+++CG+ G Sbjct: 153 WNSVSGLYGAVRNPRDLSRTAGGSSGGDAANVAAGFATIGLGGDLGGSIRVPASWCGVYG 212 Query: 254 LKPTGNRLSKSGLKGCVYGQTAVQL--SLGPMARDVESLALCLKAL 297 + R+ G ++L +GP+AR ++ + L + + Sbjct: 213 FRTGPGRIPDVNPNGGRSRNVVMELMAQIGPIARSIDDIELAFRIM 258 >3H0L-A nrPDB Length = 478 Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 89/302 (29%), Positives = 150/302 (49%), Gaps = 19/302 (6%) Query: 79 LLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQ-LSQAP----RQGL 133 L +L + L+ GE+SP+ V ++ + N+ V +Y+T + L QA R+ Sbjct: 7 LSELRELLKRGEVSPKEVVESFYDR---YNQTEEKVKAYITPLYGKALKQAESLKERELP 63 Query: 134 LYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLS 193 L+G+P+++K+ +G +T + E + D V++ LK GA+ TN+ + + Sbjct: 64 LFGIPIAVKDNILVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAMG 123 Query: 194 FDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICG 253 F T NPW + PGGSSGG A + +P+ LG+D GGSIR P++FCG+ G Sbjct: 124 SSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGVIG 183 Query: 254 LKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALL-CEHLFTLDPTVPPL 312 +KPT R+S+ GL + + Q +G R E +AL L+ + + + VP Sbjct: 184 IKPTYGRVSRYGL--VAFASSLDQ--IGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVP 239 Query: 313 PFREEVYRSSRPLRVGY-YETDNYTMPSPAMRRALIETKQRLEAAGHTL----IPFLPNN 367 + EEV + + L++G E Y + P ++ A + LE G + +P + + Sbjct: 240 EWSEEVKKEVKGLKIGLPKEFFEYEL-QPQVKEAFENFIKELEKEGFEIKEVSLPHVKYS 298 Query: 368 IP 369 IP Sbjct: 299 IP 300 >3KFU-E nrPDB Length = 471 Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 94/272 (34%), Positives = 138/272 (50%), Gaps = 11/272 (4%) Query: 81 QLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQGL-LYGVPV 139 ++ ++ GE+SP V YL + E++ G S L + + ++A GL L G+ V Sbjct: 5 EIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLS-LNERLLEEAEAVDPGLPLAGLVV 63 Query: 140 SLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNP 199 ++K+ + +G +T G L E + V LK GA+ TN+ + + + Sbjct: 64 AVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHS 123 Query: 200 LFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGN 259 F T NP+ + PGGSSGG A + + +PL LG+D GGS+R P+AFCG+ GLKPT Sbjct: 124 AFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYG 183 Query: 260 RLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLP--FREE 317 R+S+ GL Y + Q +GPMAR V LAL + A LD T LP F+E Sbjct: 184 RVSRFGL--IAYASSLDQ--IGPMARSVRDLALLMDAAAGPD--PLDATSLDLPPRFQEA 237 Query: 318 VYRSSRPLRVGYYETDNYTMPSPAMRRALIET 349 + PLR+G + SP + RAL E Sbjct: 238 LEGPLPPLRLGVVR-EALAGNSPGVERALEEA 268 >6C6G-A nrPDB Length = 457 Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 67/165 (40%), Positives = 91/165 (55%), Gaps = 5/165 (3%) Query: 134 LYGVPVSLKECFSYKGHDSTLGLSLNEGM-PSESDCVVVQVLKLQGAVPFVHTNVPQSML 192 L G+P ++K F +G + G +N + P+ +D V+VQ LK GAV N+ + Sbjct: 66 LAGLPYAVKNLFDIEGVTTLAGSKINRTLPPARADAVLVQRLKAAGAVLLGGLNMDEFAY 125 Query: 193 SFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGIC 252 F N +G T NP + + GGSSGG GA I +G PL LG+D GSIR P++ CG+ Sbjct: 126 GFTTENTHYGPTRNPHDTGRIAGGSSGGSGAAIAAGQVPLSLGSDTNGSIRVPASLCGVW 185 Query: 253 GLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKAL 297 GLKPT RLS+ G V+ LGP+A VE LAL A+ Sbjct: 186 GLKPTFGRLSRRGTYPFVHSID----HLGPLADSVEGLALAYDAM 226 Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust. Identities = 12/20 (60%), Positives = 15/20 (75%) Query: 544 GLPVAVQCVALPWQEELCLR 563 G+P+ VQ +A PW E LCLR Sbjct: 423 GMPIGVQLIAAPWNESLCLR 442 >6DII-A nrPDB Length = 636 Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 89/185 (48%), Gaps = 8/185 (4%) Query: 133 LLYGVPVSLKECFSYKGHDSTLGLS-LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 191 +L G+ V++K+ H + G + L+E E D VV L+ GA+ N+ + Sbjct: 196 VLDGIFVTIKDDIDCLPHPTNGGTTWLHEDRSVEKDSAVVSKLRSCGAILLGKANMHELG 255 Query: 192 LSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 251 + +N +G T NP + GGSS G A++ +G LGTD GGS+R PSA CGI Sbjct: 256 MGTTGNNSNYGTTRNPHDPKRYTGGSSSGSAAIVAAGLCSAALGTDGGGSVRIPSALCGI 315 Query: 252 CGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALL---CEHLFTLDPT 308 GLK T R +G C G + +GP+A +E L A+L + L P+ Sbjct: 316 TGLKTTYGRTDMTG-SLCEGGTVEI---IGPLASSLEDAFLVYAAILGSSSADRYNLKPS 371 Query: 309 VPPLP 313 P P Sbjct: 372 PPCFP 376 Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust. Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 39/124 (31%) Query: 466 NLDVLLTPMLGPALDLNTPGR----------ATGAISYTVLYNCLDFPAGVVPVTTVTAE 515 ++DV++TP G + P T + + + N L FPA VPV Sbjct: 504 DVDVIVTPTTGMTAPVIPPDALKNGETNIQVTTDLMRFVLAANLLGFPAISVPV------ 557 Query: 516 DDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQ 575 GY + GLP+ +Q + PW E L VE+L Sbjct: 558 ---------GY--------------DKEGLPIGLQIMGRPWAEATVLGLAAAVEELAPVT 594 Query: 576 KQPS 579 K+P+ Sbjct: 595 KKPA 598 >4WJ3-A nrPDB Length = 484 Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 108/231 (46%), Gaps = 11/231 (4%) Query: 74 LLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQ-- 131 L L L ++ + L + S E + T LG+ +++ N S D ++A + Sbjct: 2 LHQLTLAEIARALADKQFSAEELTRTLLGRIRQLDPQLNSFISITDDLAIAQAKAADERR 61 Query: 132 -----GLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTN 186 G L G P++ K+ F +G ++ G + + S D VV+ L GAV N Sbjct: 62 ANGENGALLGAPIAHKDLFCTQGVRTSCGSKMLDNFVSPYDATVVEKLTAAGAVTLGKLN 121 Query: 187 VPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPS 246 + + + + +G NPW + PGGSSGG A + + P GTD GGSIR P+ Sbjct: 122 MDEFAMGSSNQSSHYGAVKNPWSLDRVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPA 181 Query: 247 AFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKAL 297 A + G+KPT R+S+ G+ Y + Q GP+AR E AL L + Sbjct: 182 ALTNLTGIKPTYGRVSRWGM--IAYASSLDQ--GGPLARTAEDCALMLGVM 228 >2G5H-A nrPDB Length = 485 Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 109/206 (52%), Gaps = 11/206 (5%) Query: 127 QAPRQ--GLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVH 184 QA Q G L+G+P+ +K+ G ++T + EG + V++ L + AV Sbjct: 62 QAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGK 121 Query: 185 TNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRF 244 N+ + + F +T+NP+ PGGSSGG A + +G PL LG+D GGSIR Sbjct: 122 LNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQ 181 Query: 245 PSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFT 304 P+A+CG+ G+KPT R+S+ GL + + Q +GP+ R+V+ A+ L+A+ + Sbjct: 182 PAAYCGVVGMKPTYGRVSRFGL--VAFASSLDQ--IGPLTRNVKDNAIVLEAISGADVN- 236 Query: 305 LDPTVPP---LPFREEVYRSSRPLRV 327 D T P + F E+ + + L+V Sbjct: 237 -DSTSAPVDDVDFTSEIGKDIKGLKV 261 >2DC0-A nrPDB Length = 434 Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 18/234 (7%) Query: 79 LLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTD---------CETQLSQAP 129 LL+ + L++G +P A+ L +A + + N + +YL + +L + Sbjct: 3 LLEAKRLLETGRTTPLALLEEALERA-KAFQDRNAL-AYLDEEAARKEALALTEELRRGQ 60 Query: 130 RQGLLYGVPVSLKECFSYKGHDSTLGLSLN-EGMPSESDCVVVQVLKLQGAVPFVHTNVP 188 +G L+G+P+++K+ F KG + G +P E+ V + L+ GA+ F TN+ Sbjct: 61 VRGPLHGLPLTVKDLFPVKGMPTRAGTKAPLPPLPEEARAV--RRLREAGALLFAKTNMH 118 Query: 189 QSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAF 248 + L NP G N S+ GGSSGG + G LGTD GGSIR P+ F Sbjct: 119 EIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGF 178 Query: 249 CGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHL 302 G+ G KP+ R+S L+G + + + GP+ R V + L E + Sbjct: 179 NGVVGFKPSYGRVS---LEGALPLSRSTDHA-GPLTRSVRDAHFLTEILAGESI 228 >3AL0-A nrPDB Length = 475 Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 4/168 (2%) Query: 130 RQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQ 189 ++G +G+PV++K+ G +T + E S D VV+ +K G V N+ + Sbjct: 54 KKGKFWGIPVAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDE 113 Query: 190 SMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFC 249 + F T NPW + PGGSSGG A + +G LG+D GGS+R P++ C Sbjct: 114 FAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLC 173 Query: 250 GICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKAL 297 G+ G KPT +S+ GL + + Q +GP+ + V A+ ++ + Sbjct: 174 GVVGYKPTYGLVSRYGL--VAFASSLDQ--IGPITKTVRDAAILMEII 217 >1O9P-A nrPDB Length = 414 Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 87/191 (45%), Gaps = 11/191 (5%) Query: 77 LPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQGLLYG 136 + L L +++++GELSP A K + + Q S G L G Sbjct: 2 ISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQAS-----GPLRG 56 Query: 137 VPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDC 196 + V +K+ + +G + G SD VV +LK GA T + +F Sbjct: 57 IAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKT----TTTAFAS 112 Query: 197 SNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKP 256 +P T+NP + SPGG+S G A +G+G PL LGT GGS+ P+A+CG +KP Sbjct: 113 RDPT--ATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKP 170 Query: 257 TGNRLSKSGLK 267 + L G+K Sbjct: 171 SFRMLPTVGVK 181 >4YJI-A nrPDB Length = 495 Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 86/312 (27%), Positives = 132/312 (42%), Gaps = 23/312 (7%) Query: 81 QLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTD--------CETQLSQAPRQG 132 ++V+ ++S ++SP V + + + + G N V D E ++ Q G Sbjct: 15 EIVELVKSKQISPREVVESTIDLIEQRDPGLNAVVYKAYDEAREKAAALERRIMQGEPVG 74 Query: 133 LLYGVPVSLKECFSYK-GHDSTL-GLSLNEGMPSESDCVVVQVLKLQGAVPFV--HTNVP 188 +L GVP +K+ F+ K G STL G+ + + LK+ G + TN P Sbjct: 75 MLAGVPTLMKDLFAAKPGWPSTLGGIRALKDARGAAGVWSTYPLKMSGEDSLLLGQTNSP 134 Query: 189 QSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAF 248 N FG T NP+ + GGSSGG AL+ G P+ GTD GG+IR P+A+ Sbjct: 135 VYGFRGTTDNTFFGPTRNPFNLDFNAGGSSGGAAALVADGIVPVAGGTDGGGAIRIPAAW 194 Query: 249 CGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFT-LDP 307 G +P+ R+ + L GP+ R V AL + L H F DP Sbjct: 195 TNTYGFQPSIGRVPFKSRPNAFH--PGPYLYEGPITRTVRDAALAMNVL---HGFDRRDP 249 Query: 308 TV--PPLPFREEVYRSSRPLRVGYYETDNY-TMPSPAMRRALIETKQRLEAAGHTLIPFL 364 L F + + R ++G T NY P + LI R+ + F+ Sbjct: 250 ASLRVKLDFTSALAQGVRGKKIGL--TLNYGVFPVQQEIQDLIGKAARVFTELGAHVEFV 307 Query: 365 PNNIPYALEVLS 376 IPY+ + +S Sbjct: 308 DLGIPYSQKQMS 319 >3A2Q-A nrPDB Length = 493 Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 86/183 (46%), Gaps = 10/183 (5%) Query: 86 LQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDC---ETQLSQAPRQGLLYGVPVSLK 142 ++SGE+S + + VN N V L + E++L+ P GVP LK Sbjct: 17 VRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESELASGP----FAGVPYLLK 72 Query: 143 ECFSYKGHD---STLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNP 199 + D S++ G ++ D VQ ++ G V TN P+ Sbjct: 73 DLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPE 132 Query: 200 LFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGN 259 +G T NPW +S GGSSGG GA + + SP+ G D G++R P++ CG+ GLKPT Sbjct: 133 AWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRG 192 Query: 260 RLS 262 R+S Sbjct: 193 RIS 195 >3A1K-A nrPDB Length = 521 Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 71/167 (42%), Gaps = 4/167 (2%) Query: 131 QGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQS 190 G+L G V++K+ + G G EG D VV L GA Sbjct: 85 DGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDL 144 Query: 191 MLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCG 250 S P G NPW + GGSSGG AL+ +G +G D GGSIR P+AFCG Sbjct: 145 CFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCG 204 Query: 251 ICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKAL 297 + G KPT + +G + LGP+ R V AL L + Sbjct: 205 VVGHKPTFGLVPYTG----AFPIERTIDHLGPITRTVHDAALMLSVI 247 >4N0I-A nrPDB Length = 464 Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 95/212 (44%), Gaps = 13/212 (6%) Query: 134 LYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLS 193 L G S+K+ K +T + E S D VV++LK G TN+ + + Sbjct: 44 LTGCVASIKDNIVTKDFPTTCASHILENFKSPFDATVVKLLKQAGVHILGKTNLDEFGMG 103 Query: 194 FDCSNPLFGQTMNP---WKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCG 250 + + G +NP + K GGSS G A + LGTD GGS+R P+ + Sbjct: 104 SGGVHSIRGPVINPLYPHEDKKIMGGSSSGAAASVACDLVDFALGTDTGGSVRLPACYGS 163 Query: 251 ICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVP 310 + G KP+ RLS+ G+ Y Q+ ++G +++ + L L + DPT Sbjct: 164 VLGFKPSYGRLSRFGV--IAYSQSLD--TVGILSKKINVLRKVFHTL--DKYDMKDPTSL 217 Query: 311 PLPFREEV---YRSSRPLRVGYY-ETDNYTMP 338 + RE + + RPL+VG E + +MP Sbjct: 218 SVELRELIEGNKKVRRPLKVGIVKEFSHESMP 249 >4GYR-A nrPDB Length = 621 Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 61/138 (44%), Gaps = 11/138 (7%) Query: 134 LYGVPVSLKECFSYKGHDSTLGLSLNEGMPS-----ESDCVVVQVLKLQGAVPFVHTNVP 188 LYGVP F+ K + GL + P+ + D VV L+ GA+ TN+ Sbjct: 95 LYGVP------FAVKDNIDVAGLPCSAACPAFTYEPDRDATVVARLRAAGAIVLGKTNLD 148 Query: 189 QSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAF 248 Q + FG + GGSS G + +G LGTD GS R P+AF Sbjct: 149 QFATGLVGTRSPFGAPRCVFDQDYISGGSSSGSAVAVAAGLVAFSLGTDTAGSGRVPAAF 208 Query: 249 CGICGLKPTGNRLSKSGL 266 + G+KPT LS SG+ Sbjct: 209 NNLVGVKPTKGLLSTSGV 226 >3T7C-A nrPDB Length = 299 Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 17/87 (19%) Query: 239 GGSIRFPSAFCGICGLKPTGNRL-SKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKAL 297 GGSI F S+ G+ G + GN + SK GL G + + L LGP R++ +C ++ Sbjct: 170 GGSIVFTSSIGGLRGAENIGNYIASKHGLHGLMR---TMALELGP--RNIRVNIVCPSSV 224 Query: 298 LCEHLFTLDPTVPPLPFREEVYRSSRP 324 P+ E YR RP Sbjct: 225 AT-----------PMLLNEPTYRMFRP 240 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 6MRG-A nrPDB 949 0.0 3H0L-A nrPDB 309 2e-84 4YJI-A nrPDB 287 1e-77 3KFU-E nrPDB 267 8e-72 4WJ3-A nrPDB 265 3e-71 5H6S-A nrPDB 260 1e-69 2G5H-A nrPDB 251 6e-67 3AL0-A nrPDB 247 9e-66 6DII-A nrPDB 230 2e-60 2DC0-A nrPDB 226 2e-59 6C6G-A nrPDB 222 3e-58 4N0I-A nrPDB 215 4e-56 3A1K-A nrPDB 208 4e-54 3A2Q-A nrPDB 196 3e-50 1O9P-A nrPDB 188 5e-48 4GYR-A nrPDB 157 1e-38 Sequences not found previously or not previously below threshold: 2ZXX-A nrPDB 34 0.22 1T2K-D nrPDB 34 0.27 3C51-A nrPDB 32 0.75 4Z4L-A nrPDB 29 4.8 6GB2-Bd nrPDB 29 7.2 CONVERGED! >6MRG-A nrPDB Length = 580 Score = 949 bits (2453), Expect = 0.0, Method: Composition-based stats. Identities = 542/548 (98%), Positives = 546/548 (99%) Query: 32 TGRQKARGAATRARQKQRASLETMDKAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGEL 91 TGRQKARGAATRARQKQRASLETMDKAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGEL Sbjct: 33 TGRQKARGAATRARQKQRASLETMDKAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGEL 92 Query: 92 SPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHD 151 SPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHD Sbjct: 93 SPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHD 152 Query: 152 STLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSS 211 STLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM S+DCSNPLFGQTMNPWKSS Sbjct: 153 STLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSS 212 Query: 212 KSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVY 271 KSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVY Sbjct: 213 KSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVY 272 Query: 272 GQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYE 331 GQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYE Sbjct: 273 GQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYE 332 Query: 332 TDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSAGGLFSDGGRSFLQN 391 TDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLS GGLFSDGGRSFLQN Sbjct: 333 TDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSTGGLFSDGGRSFLQN 392 Query: 392 FKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNSMRPRSAEKLWKLQHEI 451 FKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLN+MRPRSAEKLWKLQHEI Sbjct: 393 FKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEI 452 Query: 452 EMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRATGAISYTVLYNCLDFPAGVVPVTT 511 EMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRATGA+SYT+LYNCLDFPAGVVPVTT Sbjct: 453 EMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRATGAVSYTMLYNCLDFPAGVVPVTT 512 Query: 512 VTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQL 571 VTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQL Sbjct: 513 VTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQL 572 Query: 572 MTPQKQPS 579 MTPQKQPS Sbjct: 573 MTPQKQPS 580 >3H0L-A nrPDB Length = 478 Score = 309 bits (791), Expect = 2e-84, Method: Composition-based stats. Identities = 83/300 (27%), Positives = 147/300 (49%), Gaps = 13/300 (4%) Query: 78 PLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQA--PRQGLLY 135 L +L + L+ GE+SP+ V ++ + + + + L + +++ R+ L+ Sbjct: 6 SLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKERELPLF 65 Query: 136 GVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFD 195 G+P+++K+ +G +T + E + D V++ LK GA+ TN+ + + Sbjct: 66 GIPIAVKDNILVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAMGSS 125 Query: 196 CSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLK 255 F T NPW + PGGSSGG A + +P+ LG+D GGSIR P++FCG+ G+K Sbjct: 126 TEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIK 185 Query: 256 PTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALL-CEHLFTLDPTVPPLPF 314 PT R+S+ GL + + Q +G R E +AL L+ + + + VP + Sbjct: 186 PTYGRVSRYGL--VAFASSLDQ--IGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVPEW 241 Query: 315 REEVYRSSRPLRVGY-YETDNYTMPSPAMRRALIETKQRLEAAGHTL----IPFLPNNIP 369 EEV + + L++G E Y + P ++ A + LE G + +P + +IP Sbjct: 242 SEEVKKEVKGLKIGLPKEFFEYEL-QPQVKEAFENFIKELEKEGFEIKEVSLPHVKYSIP 300 >4YJI-A nrPDB Length = 495 Score = 287 bits (734), Expect = 1e-77, Method: Composition-based stats. Identities = 82/316 (25%), Positives = 129/316 (40%), Gaps = 17/316 (5%) Query: 74 LLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTD--------CETQL 125 + ++V+ ++S ++SP V + + + + G N V D E ++ Sbjct: 8 VHWKSAAEIVELVKSKQISPREVVESTIDLIEQRDPGLNAVVYKAYDEAREKAAALERRI 67 Query: 126 SQAPRQGLLYGVPVSLKECFSYK-GHDSTLG-LSLNEGMPSESDCVVVQVLKLQGA--VP 181 Q G+L GVP +K+ F+ K G STLG + + + LK+ G + Sbjct: 68 MQGEPVGMLAGVPTLMKDLFAAKPGWPSTLGGIRALKDARGAAGVWSTYPLKMSGEDSLL 127 Query: 182 FVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGS 241 TN P N FG T NP+ + GGSSGG AL+ G P+ GTD GG+ Sbjct: 128 LGQTNSPVYGFRGTTDNTFFGPTRNPFNLDFNAGGSSGGAAALVADGIVPVAGGTDGGGA 187 Query: 242 IRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEH 301 IR P+A+ G +P+ R+ + L GP+ R V AL + L Sbjct: 188 IRIPAAWTNTYGFQPSIGRVPFKSRPNAFH--PGPYLYEGPITRTVRDAALAMNVLHGFD 245 Query: 302 LFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNY-TMPSPAMRRALIETKQRLEAAGHTL 360 L F + + R ++G T NY P + LI R+ Sbjct: 246 RRDPASLRVKLDFTSALAQGVRGKKIGL--TLNYGVFPVQQEIQDLIGKAARVFTELGAH 303 Query: 361 IPFLPNNIPYALEVLS 376 + F+ IPY+ + +S Sbjct: 304 VEFVDLGIPYSQKQMS 319 >3KFU-E nrPDB Length = 471 Score = 267 bits (683), Expect = 8e-72, Method: Composition-based stats. Identities = 97/295 (32%), Positives = 146/295 (49%), Gaps = 11/295 (3%) Query: 81 QLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQG-LLYGVPV 139 ++ ++ GE+SP V YL + E++ G S L + + ++A G L G+ V Sbjct: 5 EIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLS-LNERLLEEAEAVDPGLPLAGLVV 63 Query: 140 SLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNP 199 ++K+ + +G +T G L E + V LK GA+ TN+ + + + Sbjct: 64 AVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHS 123 Query: 200 LFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGN 259 F T NP+ + PGGSSGG A + + +PL LG+D GGS+R P+AFCG+ GLKPT Sbjct: 124 AFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYG 183 Query: 260 RLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLP--FREE 317 R+S+ GL Y + Q +GPMAR V LAL + A LD T LP F+E Sbjct: 184 RVSRFGL--IAYASSLDQ--IGPMARSVRDLALLMDAAAGPD--PLDATSLDLPPRFQEA 237 Query: 318 VYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYAL 372 + PLR+G + SP + RAL E + G ++ ++P AL Sbjct: 238 LEGPLPPLRLGVVR-EALAGNSPGVERALEEALKVFRELGLSVREVSWPSLPQAL 291 >4WJ3-A nrPDB Length = 484 Score = 265 bits (678), Expect = 3e-71, Method: Composition-based stats. Identities = 83/310 (26%), Positives = 134/310 (43%), Gaps = 20/310 (6%) Query: 74 LLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQ-- 131 L L L ++ + L + S E + T LG+ +++ N S D ++A + Sbjct: 2 LHQLTLAEIARALADKQFSAEELTRTLLGRIRQLDPQLNSFISITDDLAIAQAKAADERR 61 Query: 132 -----GLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTN 186 G L G P++ K+ F +G ++ G + + S D VV+ L GAV N Sbjct: 62 ANGENGALLGAPIAHKDLFCTQGVRTSCGSKMLDNFVSPYDATVVEKLTAAGAVTLGKLN 121 Query: 187 VPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPS 246 + + + + +G NPW + PGGSSGG A + + P GTD GGSIR P+ Sbjct: 122 MDEFAMGSSNQSSHYGAVKNPWSLDRVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPA 181 Query: 247 AFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLD 306 A + G+KPT R+S+ G+ Y + Q GP+AR E AL L + D Sbjct: 182 ALTNLTGIKPTYGRVSRWGM--IAYASSLDQ--GGPLARTAEDCALMLGVMAG--FDPKD 235 Query: 307 PTV---PPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTL--- 360 T P + + + LR+G + A++ + L+ G T+ Sbjct: 236 STSVEQPVDDYLAALQKPLSGLRIGLPREYFGAGLDSRIADAVLAVVEELKTLGATVKDI 295 Query: 361 -IPFLPNNIP 369 +P + + IP Sbjct: 296 SLPNMQHAIP 305 >5H6S-A nrPDB Length = 481 Score = 260 bits (664), Expect = 1e-69, Method: Composition-based stats. Identities = 76/297 (25%), Positives = 132/297 (44%), Gaps = 15/297 (5%) Query: 77 LPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQ----- 131 L ++ ++ G S E V +L + E N TN D + ++A + Sbjct: 29 LTATEIRARISEGAASREEVVHEHLDRIDEFNALTNSFVELRADQVLEEARAADREFGST 88 Query: 132 --GLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQ 189 G L GVP+S+K+ +S G T GL +N + D V L+ G + H +P Sbjct: 89 LGGPLDGVPLSIKDSYSVAGLHRTDGLPVNADVLDAQDDVATARLRAAGGLVLGHAGIPD 148 Query: 190 SMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFC 249 + ++ + L+G NP S++ GGSSGG+ A + +G + +GLG D+GGSIR P+++C Sbjct: 149 LCIRWNSVSGLYGAVRNPRDLSRTAGGSSGGDAANVAAGFATIGLGGDLGGSIRVPASWC 208 Query: 250 GICGLKPTGNRLSKSGLKGCVYGQTAVQL--SLGPMARDVESLALCLKALLCEHLFTLDP 307 G+ G + R+ G ++L +GP+AR ++ + L + + D Sbjct: 209 GVYGFRTGPGRIPDVNPNGGRSRNVVMELMAQIGPIARSIDDIELAFRIMTGVDR--RDT 266 Query: 308 TVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLIPFL 364 PL E + RV + + ++ L T + L A G+ + + Sbjct: 267 MSSPLGLIEPIEAP----RVAVLRHETGAVLDSSVEEQLDATIEMLRAEGYVVEENV 319 >2G5H-A nrPDB Length = 485 Score = 251 bits (641), Expect = 6e-67, Method: Composition-based stats. Identities = 75/305 (24%), Positives = 136/305 (44%), Gaps = 17/305 (5%) Query: 78 PLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTD------CETQLSQAPRQ 131 + L+ ++ ++ P V E + + + E QA Q Sbjct: 7 SVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQ 66 Query: 132 --GLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQ 189 G L+G+P+ +K+ G ++T + EG + V++ L + AV N+ + Sbjct: 67 MDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDE 126 Query: 190 SMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFC 249 + F +T+NP+ PGGSSGG A + +G PL LG+D GGSIR P+A+C Sbjct: 127 FAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYC 186 Query: 250 GICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTV 309 G+ G+KPT R+S+ GL + + Q +GP+ R+V+ A+ L+A+ + Sbjct: 187 GVVGMKPTYGRVSRFGL--VAFASSLDQ--IGPLTRNVKDNAIVLEAISGADVNDSTSAP 242 Query: 310 P-PLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTL----IPFL 364 + F E+ + + L+V + + ++ A+ + L++ G + +P Sbjct: 243 VDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNT 302 Query: 365 PNNIP 369 IP Sbjct: 303 KFGIP 307 >3AL0-A nrPDB Length = 475 Score = 247 bits (631), Expect = 9e-66, Method: Composition-based stats. Identities = 67/293 (22%), Positives = 117/293 (39%), Gaps = 13/293 (4%) Query: 80 LQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQGLLYGVPV 139 L + + L+ E E + L ++ S + ++G +G+PV Sbjct: 9 LTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFIS-----VRENVSVEKKGKFWGIPV 63 Query: 140 SLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNP 199 ++K+ G +T + E S D VV+ +K G V N+ + + Sbjct: 64 AIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERS 123 Query: 200 LFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGN 259 F T NPW + PGGSSGG A + +G LG+D GGS+R P++ CG+ G KPT Sbjct: 124 AFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYG 183 Query: 260 RLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVY 319 +S+ GL + + Q +GP+ + V A+ ++ + + F E+ Sbjct: 184 LVSRYGL--VAFASSLDQ--IGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLSEIE 239 Query: 320 RSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTL----IPFLPNNI 368 ++ E + E + LE G + IP + ++ Sbjct: 240 EGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSV 292 >6DII-A nrPDB Length = 636 Score = 230 bits (586), Expect = 2e-60, Method: Composition-based stats. Identities = 120/522 (22%), Positives = 192/522 (36%), Gaps = 91/522 (17%) Query: 87 QSGELSPEAVFFTYLGKAWEVNKGT-----------NCVTSYLTDCETQLSQAPRQGLLY 135 +S +P V + E N V + Q +L Sbjct: 139 RSKLTTPLQVAKRIISIIEEFGYDKPPTPFLIRFDANEVIKQAEASTRRFEQGNPISVLD 198 Query: 136 GVPVSLKECFSYKGHDSTLGLS-LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSF 194 G+ V++K+ H + G + L+E E D VV L+ GA+ N+ + + Sbjct: 199 GIFVTIKDDIDCLPHPTNGGTTWLHEDRSVEKDSAVVSKLRSCGAILLGKANMHELGMGT 258 Query: 195 DCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGL 254 +N +G T NP + GGSS G A++ +G LGTD GGS+R PSA CGI GL Sbjct: 259 TGNNSNYGTTRNPHDPKRYTGGSSSGSAAIVAAGLCSAALGTDGGGSVRIPSALCGITGL 318 Query: 255 KPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLC---EHLFTLDPTVPP 311 K T R +G C G + +GP+A +E L A+L + L P+ P Sbjct: 319 KTTYGRTDMTG-SLCEGGTVEI---IGPLASSLEDAFLVYAAILGSSSADRYNLKPSPPC 374 Query: 312 LP--FREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIP 369 P + LR+G Y + S + + + L + + +P Sbjct: 375 FPKLLSHNGSNAIGSLRLGKYTKWFNDVSSSDISDKCEDILKLLSNNHGCKV--VEIVVP 432 Query: 370 YALEVLSAGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRL 429 LE + A + S G P L L K LS + F Sbjct: 433 -ELEEMRAAHVISIG-------------SPTLSSLTPYCEAGKNSK--LSYDTRTSFAIF 476 Query: 430 AAFLNSMRPRSAEKLWK--LQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGR- 486 +F ++ +A+ L + +++ + +++ ++DV++TP G + P Sbjct: 477 RSF-SASDYIAAQCLRRRLMEYHLNIFK----------DVDVIVTPTTGMTAPVIPPDAL 525 Query: 487 ---------ATGAISYTVLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDIWDIILKK 537 T + + + N L FPA VPV GY Sbjct: 526 KNGETNIQVTTDLMRFVLAANLLGFPAISVPV---------------GY----------- 559 Query: 538 AMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQKQPS 579 + GLP+ +Q + PW E L VE+L K+P+ Sbjct: 560 ---DKEGLPIGLQIMGRPWAEATVLGLAAAVEELAPVTKKPA 598 >2DC0-A nrPDB Length = 434 Score = 226 bits (576), Expect = 2e-59, Method: Composition-based stats. Identities = 69/252 (27%), Positives = 106/252 (42%), Gaps = 18/252 (7%) Query: 77 LPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTD--------CETQLSQA 128 + LL+ + L++G +P A+ L +A + N + + +L + Sbjct: 1 MDLLEAKRLLETGRTTPLALLEEALERAKAF-QDRNALAYLDEEAARKEALALTEELRRG 59 Query: 129 PRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVP 188 +G L+G+P+++K+ F KG + G P + V+ L+ GA+ F TN+ Sbjct: 60 QVRGPLHGLPLTVKDLFPVKGMPTRAGTKAPLP-PLPEEARAVRRLREAGALLFAKTNMH 118 Query: 189 QSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAF 248 + L NP G N S+ GGSSGG + G LGTD GGSIR P+ F Sbjct: 119 EIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGF 178 Query: 249 CGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPT 308 G+ G KP+ R+S G + GP+ R V + L E + Sbjct: 179 NGVVGFKPSYGRVSLEG----ALPLSRSTDHAGPLTRSVRDAHFLTEILAGESIPLEGVQ 234 Query: 309 VP----PLPFRE 316 P PL F E Sbjct: 235 NPVFGVPLDFLE 246 >6C6G-A nrPDB Length = 457 Score = 222 bits (566), Expect = 3e-58, Method: Composition-based stats. Identities = 140/512 (27%), Positives = 207/512 (40%), Gaps = 101/512 (19%) Query: 80 LQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLS--------QAPRQ 131 +++++ + SG S V L + N T + + + Sbjct: 4 VEIIEGIASGRTSARDVCEEALATIGATDGLINAFTCRTVERARAEADAIDVRRARGEVL 63 Query: 132 GLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPS-ESDCVVVQVLKLQGAVPFVHTNVPQS 190 L G+P ++K F +G + G +N +P +D V+VQ LK GAV N+ + Sbjct: 64 PPLAGLPYAVKNLFDIEGVTTLAGSKINRTLPPARADAVLVQRLKAAGAVLLGGLNMDEF 123 Query: 191 MLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCG 250 F N +G T NP + + GGSSGG GA I +G PL LG+D GSIR P++ CG Sbjct: 124 AYGFTTENTHYGPTRNPHDTGRIAGGSSGGSGAAIAAGQVPLSLGSDTNGSIRVPASLCG 183 Query: 251 ICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDP--- 307 + GLKPT RLS+ G V+ LGP+A VE LAL A+ LDP Sbjct: 184 VWGLKPTFGRLSRRGTYPFVHSI----DHLGPLADSVEGLALAYDAMQGPD--PLDPGCS 237 Query: 308 TVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNN 367 P + + LR+G PA R A+ L A+ + P Sbjct: 238 ASRIQPSVPVLSQGIAGLRIGVLGGWFRDNAGPAARAAVDVAALTLGASEVVMWPDAEIG 297 Query: 368 IPYALEVLSAGG--LFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPL 425 A + ++ G L D R Q+F+ VD R +S +L+P Sbjct: 298 RAAAFVITASEGGCLHLDDLRIRPQDFEPLSVD-----------------RFISGVLQP- 339 Query: 426 FPRLAAFLNSMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLL---TPMLGPA---- 478 +A +L + R R +YR V A ++ + D+L+ TP+ PA Sbjct: 340 ---VAWYLRAQRFR------------RVYRDKVNALFR--DWDILIAPATPISAPAIGTE 382 Query: 479 -LDLNT---PGR-ATGAISYTVLYNCLDFPAG--VVPVTTVTAEDDAQMELYKGYFGDIW 531 +++N P R A G ++ V + AG VV T E+D Sbjct: 383 WIEVNGTRHPCRPAMGLLTQPVSF------AGCPVVAAPTWPGEND-------------- 422 Query: 532 DIILKKAMKNSVGLPVAVQCVALPWQEELCLR 563 G+P+ VQ +A PW E LCLR Sbjct: 423 ------------GMPIGVQLIAAPWNESLCLR 442 >4N0I-A nrPDB Length = 464 Score = 215 bits (548), Expect = 4e-56, Method: Composition-based stats. Identities = 80/320 (25%), Positives = 130/320 (40%), Gaps = 22/320 (6%) Query: 97 FFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGL 156 + + N TS + ++ + L G S+K+ K +T Sbjct: 7 LKESIERLSSFQSKYNIFTSINPSPYSITNKKGTKETLTGCVASIKDNIVTKDFPTTCAS 66 Query: 157 SLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMN---PWKSSKS 213 + E S D VV++LK G TN+ + + + + G +N P + K Sbjct: 67 HILENFKSPFDATVVKLLKQAGVHILGKTNLDEFGMGSGGVHSIRGPVINPLYPHEDKKI 126 Query: 214 PGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQ 273 GGSS G A + LGTD GGS+R P+ + + G KP+ RLS+ G+ Y Q Sbjct: 127 MGGSSSGAAASVACDLVDFALGTDTGGSVRLPACYGSVLGFKPSYGRLSRFGV--IAYSQ 184 Query: 274 TAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEV---YRSSRPLRVGYY 330 + ++G +++ + L L + DPT + RE + + RPL+VG Sbjct: 185 SLD--TVGILSKKINVLRKVFHTL--DKYDMKDPTSLSVELRELIEGNKKVRRPLKVGIV 240 Query: 331 -ETDNYTMPSPAMRRALIETKQRLEAAGHTL----IPFLPNNIP--YALEVLSAGGLFS- 382 E + +MP R + ++L G + IP + N +P Y L A S Sbjct: 241 KEFSHESMPI-GFHRLYLSLLEKLINLGLEIYPVSIPSVKNCLPIYYTLSPAEAASNLSR 299 Query: 383 -DGGRSFLQNFKGDFVDPCL 401 DG R ++ + D D L Sbjct: 300 YDGIRYGYRDSELDIKDGIL 319 >3A1K-A nrPDB Length = 521 Score = 208 bits (530), Expect = 4e-54, Method: Composition-based stats. Identities = 83/336 (24%), Positives = 123/336 (36%), Gaps = 24/336 (7%) Query: 54 TMDKAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNC 113 T+DK RL+ P L AL + +V +L + E +P + + N + Sbjct: 21 TLDKTA---RLEWPALIDGALGSY---DVVDQLYADEATPPTTSREHAVPSASENPLSAW 74 Query: 114 VTSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQV 173 + + G+L G V++K+ + G G EG D VV Sbjct: 75 YVTTSIPPTS-------DGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTR 127 Query: 174 LKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLG 233 L GA S P G NPW + GGSSGG AL+ +G Sbjct: 128 LLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFA 187 Query: 234 LGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALC 293 +G D GGSIR P+AFCG+ G KPT + +G + LGP+ R V AL Sbjct: 188 IGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTG----AFPIERTIDHLGPITRTVHDAALM 243 Query: 294 LKALLCEHL-FTLDPTVPPL-PFREEVYRSSRPLRVGYY-ETDNYTMPSPAMRRALIETK 350 L + + + LR+G E + + P + A+ Sbjct: 244 LSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVREGFGHAVSQPEVDDAVRAAA 303 Query: 351 QRLEAAGHTLIPFLPNNIPYALEVLSAGGLF-SDGG 385 L + + NIP+ L + +DGG Sbjct: 304 HSL-TEIGCTVEEV--NIPWHLHAFHIWNVIATDGG 336 >3A2Q-A nrPDB Length = 493 Score = 196 bits (497), Expect = 3e-50, Method: Composition-based stats. Identities = 71/251 (28%), Positives = 105/251 (41%), Gaps = 6/251 (2%) Query: 83 VQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQGLLYGVPVSLK 142 + ++SGE+S + + VN N V L + + S+ G GVP LK Sbjct: 14 AELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESELA-SGPFAGVPYLLK 72 Query: 143 ECFSYKGHD---STLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNP 199 + D S++ G ++ D VQ ++ G V TN P+ Sbjct: 73 DLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPE 132 Query: 200 LFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGN 259 +G T NPW +S GGSSGG GA + + SP+ G D G++R P++ CG+ GLKPT Sbjct: 133 AWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRG 192 Query: 260 RLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEH-LFTLDPTVPPLPFREEV 318 R+S G A G AR V +A L + T P+ + + Sbjct: 193 RIS-PGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAPTASRPYAQGI 251 Query: 319 YRSSRPLRVGY 329 + LRVG Sbjct: 252 SENPGSLRVGV 262 >1O9P-A nrPDB Length = 414 Score = 188 bits (478), Expect = 5e-48, Method: Composition-based stats. Identities = 74/284 (26%), Positives = 115/284 (40%), Gaps = 28/284 (9%) Query: 77 LPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQGLLYG 136 + L L +++++GELSP A K + + Q S G L G Sbjct: 2 ISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQAS-----GPLRG 56 Query: 137 VPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDC 196 + V +K+ + +G + G SD VV +LK GA T + +F Sbjct: 57 IAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKT----TTTAFAS 112 Query: 197 SNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKP 256 +P T+NP + SPGG+S G A +G+G PL LGT GGS+ P+A+CG +KP Sbjct: 113 RDPT--ATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKP 170 Query: 257 TGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFRE 316 + L G+K + ++G E LA L A+ F Sbjct: 171 SFRMLPTVGVKCYSWA----LDTVGLFGARAEDLARGLLAMTGRS-----------EFSG 215 Query: 317 EVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTL 360 V ++ R+G + PA + L + E AG ++ Sbjct: 216 IV--PAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASV 257 >4GYR-A nrPDB Length = 621 Score = 157 bits (397), Expect = 1e-38, Method: Composition-based stats. Identities = 111/459 (24%), Positives = 160/459 (34%), Gaps = 78/459 (16%) Query: 75 LTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQA------ 128 L++ L + L G + E V + G V L E L++A Sbjct: 32 LSMTLEGIQAFLAQGG-TIEQVVTEAYDRITRY--GDKAVWIALRPREEVLAEARALDAS 88 Query: 129 PRQG-LLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNV 187 P G LYGVP ++K+ G + + D VV L+ GA+ TN+ Sbjct: 89 PATGKPLYGVPFAVKDNIDVAGLPCSAACPAF-TYEPDRDATVVARLRAAGAIVLGKTNL 147 Query: 188 PQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSA 247 Q + FG + GGSS G + +G LGTD GS R P+A Sbjct: 148 DQFATGLVGTRSPFGAPRCVFDQDYISGGSSSGSAVAVAAGLVAFSLGTDTAGSGRVPAA 207 Query: 248 FCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDP 307 F + G+KPT LS SG+ ++ +++ A V L + DP Sbjct: 208 FNNLVGVKPTKGLLSTSGVVPAC--RSLDCVTV--FAASVAEGTLIRRIAEG--YDAADP 261 Query: 308 TVPPLPFREEVYRSSRPLRVGY-----YETDNYTMPSPAMRRALIETKQRLEAAGHTL-- 360 P R LRVG E T + +RAL E L+A + Sbjct: 262 YSRPSQKRRL---PHVGLRVGVPRQDQREFYGNTAYAALYQRALDEMIS-LDAELVEIDF 317 Query: 361 IPFLP-----NNIPYALEVLSAGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFK 415 PF P+ E L A +GD + R P F Sbjct: 318 APFRDAAKLLYGGPWVAERLEA-----------------------VGD--HLSRAPDSFD 352 Query: 416 RLLSLLLKPLFPRLAAFLNSMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPML 475 P + + + + + SA ++ Q+E+ Q AQW M D+LL P Sbjct: 353 -----------PVVRSIVETAKTLSAVDAFRGQYELAALTQQANAQWARM--DILLLPT- 398 Query: 476 GPALD-----LNTPGRATGAIS-YTVLYNCLDFPAGVVP 508 P + + P R + YT N LD A VP Sbjct: 399 APTIHKVEAVMADPVRLNSQLGHYTNFVNLLDCAAIAVP 437 >2ZXX-A nrPDB Length = 79 Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%) Query: 34 RQKARGAATRARQKQRASLETMDKAVQRFRLQNPDLDSEALLTLPLLQLVQKLQS 88 R+KA A + +K +E D + R R +N DL A + +++++L + Sbjct: 25 RRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIERLSN 79 >1T2K-D nrPDB Length = 61 Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 35 QKARGAATRARQKQRASLETMDKAVQRFRLQNPDLDSE-ALLTLPLLQLVQKL 86 ++ R AA+R+RQK++ +++++K + N L SE LL + QL Q L Sbjct: 7 ERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 >3C51-A nrPDB Length = 543 Score = 32.0 bits (71), Expect = 0.75, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 18/168 (10%) Query: 236 TDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSL-----------GPM- 283 +D+G ++ + G T ++ L G Y + +L GP Sbjct: 331 SDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFR 390 Query: 284 --ARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPA 341 VE+ L + L + + F E + + R+G+ + + + Sbjct: 391 ARGEKVENKELKQRVLEQAVTYPDKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHP 450 Query: 342 MRRALIETKQRLEAAGHTLIPFLPNN-IPYALEVLSAGGLFSDGGRSF 388 + R + R AG PF+P++ YA + G + G +F Sbjct: 451 LFRDI---SWRQLEAGMLTPPFVPDSRTVYAKNIQDVGAFSTVKGVAF 495 >4Z4L-A nrPDB Length = 402 Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 17/27 (62%) Query: 437 RPRSAEKLWKLQHEIEMYRQSVIAQWK 463 R +++E LWK+ ++E ++ QWK Sbjct: 359 RRKNSEWLWKVNEDLEAVNMPIVEQWK 385 >6GB2-Bd nrPDB Length = 206 Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats. Identities = 12/29 (41%), Positives = 19/29 (65%) Query: 45 RQKQRASLETMDKAVQRFRLQNPDLDSEA 73 R R+ LE ++A+Q RL +P+L +EA Sbjct: 133 RSAIRSLLEAQEEALQELRLSSPELHAEA 161 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.310 0.134 0.380 Lambda K H 0.267 0.0409 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,164,570 Number of Sequences: 36641 Number of extensions: 921540 Number of successful extensions: 2467 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 2367 Number of HSP's gapped (non-prelim): 60 length of query: 579 length of database: 10,336,785 effective HSP length: 102 effective length of query: 477 effective length of database: 6,599,403 effective search space: 3147915231 effective search space used: 3147915231 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 62 (28.5 bits)