BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P93003 (177 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 1WKO-A nrPDB 362 e-101 1QOU-A nrPDB 260 2e-70 3AXY-A nrPDB 209 7e-55 1WKP-A nrPDB 204 2e-53 1KN3-A nrPDB 69 9e-13 2IQX-A nrPDB 68 2e-12 6ENS-A nrPDB 67 3e-12 1A44-A nrPDB 66 9e-12 1BEH-A nrPDB 64 5e-11 6GAW-Bb nrPDB 59 1e-09 3J9M-6 nrPDB 48 2e-06 1WPX-B nrPDB 42 1e-04 5MRC-1 nrPDB 40 6e-04 2R77-A nrPDB 39 0.001 4X2Q-A nrPDB 29 0.90 2BO9-B nrPDB 28 1.5 1FUX-A nrPDB 27 4.8 1GY8-A nrPDB 26 7.4 >1WKO-A nrPDB Length = 180 Score = 362 bits (929), Expect = e-101, Method: Compositional matrix adjust. Identities = 177/177 (100%), Positives = 177/177 (100%) Query: 1 MENMGTRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIH 60 MENMGTRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIH Sbjct: 4 MENMGTRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIH 63 Query: 61 GGDLRSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGI 120 GGDLRSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGI Sbjct: 64 GGDLRSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGI 123 Query: 121 HRFVFVLFRQKQRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 177 HRFVFVLFRQKQRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR Sbjct: 124 HRFVFVLFRQKQRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 180 >1QOU-A nrPDB Length = 181 Score = 260 bits (664), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 123/174 (70%), Positives = 149/174 (85%), Gaps = 6/174 (3%) Query: 10 EPLIMGRVVGDVLDFFTPTTKMNVSYNK----KQVSNGHELFPSSVSSKPRVEIHGGDLR 65 +PL++GRV+GDV+D FT T KM+V YN K V NGHELFPS+V+S PRVE+HGGD+R Sbjct: 8 DPLVIGRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDMR 67 Query: 66 SFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFVF 125 SFFTL+M DPDVPGPSDP+L+EHLHWIVT+IPGTTD++FGKEVVSYE+PRP+IGIHRFVF Sbjct: 68 SFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIHRFVF 127 Query: 126 VLFRQKQR--RVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 177 +LF+QK+R ++ P + RD FNTRKF E +LGLPVAAVFFN QRETAAR+R Sbjct: 128 LLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVAAVFFNCQRETAARRR 181 >3AXY-A nrPDB Length = 170 Score = 209 bits (531), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 99/164 (60%), Positives = 130/164 (79%), Gaps = 3/164 (1%) Query: 10 EPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFT 69 +PL++GRVVGDVLD F +T + V+Y K VSNG EL PS V+ +PRVE+ G D+R+F+T Sbjct: 9 DPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGLELKPSMVTHQPRVEVGGNDMRTFYT 68 Query: 70 LVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFVFVLFR 129 LVM+DPD P PSDP L+E+LHW+VT+IPGTT A+FG+EV+SYE PRP++GIHR VFVLF+ Sbjct: 69 LVMVDPDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMSYESPRPTMGIHRLVFVLFQ 128 Query: 130 QKQRRVIFPNIPS-RDHFNTRKFAVEYDLGLPVAAVFFNAQRET 172 Q R+ ++ P R +FNT+ FA Y+LG PVAAV+FN+QRE Sbjct: 129 QLGRQTVY--APGWRQNFNTKDFAELYNLGSPVAAVYFNSQREA 170 >1WKP-A nrPDB Length = 171 Score = 204 bits (519), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 99/170 (58%), Positives = 130/170 (76%), Gaps = 3/170 (1%) Query: 4 MGTRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGD 63 M + +PLI+ RVVGDVLD F + + V+Y +++V+NG L PS V +KPRVEI G D Sbjct: 4 MSINIRDPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLNLRPSQVQNKPRVEIGGED 63 Query: 64 LRSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRF 123 LR+F+TLVM+DPDVP PS+P L+E+LHW+VT+IP TT TFG E+VSYE P P+ GIHR Sbjct: 64 LRNFYTLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVSYENPSPTAGIHRV 123 Query: 124 VFVLFRQKQRRVIFPNIPS-RDHFNTRKFAVEYDLGLPVAAVFFNAQRET 172 VF+LFRQ R+ ++ P R +FNTR+FA Y+LGLPVAAVF+N+QRE+ Sbjct: 124 VFILFRQLGRQTVY--APGWRQNFNTREFAEIYNLGLPVAAVFYNSQRES 171 >1KN3-A nrPDB Length = 183 Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 11/156 (7%) Query: 27 PTTKMNVSYNKKQVSN-GHELFPSSVSSKP-RVEIHGGDLRSFFTLVMIDPDVPGPSDPF 84 P + V+Y + +V G L P+ V +P + G D +TL++ DPD P P Sbjct: 17 PQHLLRVTYTEAEVEELGQVLTPTQVKHRPGSISWDGLDPGKLYTLILTDPDAPSRKKPV 76 Query: 85 LKEHLHWIVTNIPGTTDATFGKEVVSY--ELPRPSIGIHRFVFVLFRQ-KQRRVIFPNIP 141 +E H++V N+ G D + G + Y P G+HR+V+++++Q K R P + Sbjct: 77 YREWHHFLVVNMKG-NDISSGNVLSDYVGSGPPKGTGLHRYVWLVYQQDKPLRCDEPILT 135 Query: 142 SR--DH---FNTRKFAVEYDLGLPVAAVFFNAQRET 172 +R DH F T F +Y LG PVA + A+ ++ Sbjct: 136 NRSGDHRGKFKTAAFRKKYHLGAPVAGTCYQAEWDS 171 >2IQX-A nrPDB Length = 187 Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 11/160 (6%) Query: 27 PTTKMNVSYNKKQVSN-GHELFPSSVSSKPR-VEIHGGDLRSFFTLVMIDPDVPGPSDPF 84 P + V Y V G L P+ V ++P + G D +TLV+ DPD P DP Sbjct: 21 PQHALRVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPK 80 Query: 85 LKEHLHWIVTNIPGTTDATFGKEVVSY--ELPRPSIGIHRFVFVLFRQKQ-RRVIFPNIP 141 +E H++V N+ G D + G + Y P G+HR+V++++ Q+Q P + Sbjct: 81 FREWHHFLVVNMKG-NDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILS 139 Query: 142 SRDHFNTRKFAVE-----YDLGLPVAAVFFNAQRETAARK 176 ++ N KF VE Y LG PVA F A+ + + K Sbjct: 140 NKSGDNRGKFKVEEFRKKYHLGAPVAGTCFQAEWDDSVPK 179 >6ENS-A nrPDB Length = 193 Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 11/155 (7%) Query: 27 PTTKMNVSYNKKQVSN-GHELFPSSVSSKPR-VEIHGGDLRSFFTLVMIDPDVPGPSDPF 84 P + V Y V G L P+ V ++P + G D +TLV+ DPD P DP Sbjct: 27 PQHALRVDYAGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPK 86 Query: 85 LKEHLHWIVTNIPGTTDATFGKEVVSY--ELPRPSIGIHRFVFVLFRQKQ-RRVIFPNIP 141 +E H++V N+ G D + G + Y P G+HR+V++++ Q+Q P + Sbjct: 87 FREWHHFLVVNMKG-NDISSGTVLSDYVGSGPPSGTGLHRYVWLVYEQEQPLSCDEPILS 145 Query: 142 SRDHFNTRKFAVE-----YDLGLPVAAVFFNAQRE 171 ++ N KF VE Y+LG PVA + A+ + Sbjct: 146 NKSGDNRGKFKVETFRKKYNLGAPVAGTCYQAEWD 180 >1A44-A nrPDB Length = 185 Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 13/156 (8%) Query: 27 PTTKMNVSYNKKQVSN-GHELFPSSVSSKP-RVEIHGGDLRSFFTLVMIDPDVPGPSDPF 84 P + V Y +V G L P+ V ++P + G D +TLV+ DPD P DP Sbjct: 20 PQHPLQVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLTDPDAPSRKDPK 79 Query: 85 LKEHLHWIVTNIPGT--TDATFGKEVVSYELPRPSIGIHRFVFVLFRQ----KQRRVIFP 138 +E H++V N+ G + T + V P+ G+HR+V++++ Q K I Sbjct: 80 YREWHHFLVVNMKGNNISSGTVLSDYVGSGPPK-GTGLHRYVWLVYEQEGPLKCDEPILS 138 Query: 139 NIPSRDH---FNTRKFAVEYDLGLPVAAVFFNAQRE 171 N S DH F F +Y+LG PVA + A+ + Sbjct: 139 NR-SGDHRGKFKVASFRKKYELGAPVAGTCYQAEWD 173 >1BEH-A nrPDB Length = 187 Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 13/156 (8%) Query: 27 PTTKMNVSYNKKQVSN-GHELFPSSVSSKP-RVEIHGGDLRSFFTLVMIDPDVPGPSDPF 84 P ++V+Y V G L P+ V ++P + G D +TLV+ DPD P DP Sbjct: 21 PQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPK 80 Query: 85 LKEHLHWIVTNIPGTTDATFGKEVVSY--ELPRPSIGIHRFVFVLFRQ----KQRRVIFP 138 +E H++V N+ G D + G + Y P G+HR+V++++ Q K I Sbjct: 81 YREWHHFLVVNMKG-NDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILS 139 Query: 139 NIPSRDH---FNTRKFAVEYDLGLPVAAVFFNAQRE 171 N S DH F F +Y+L PVA + A+ + Sbjct: 140 NR-SGDHRGKFKVASFRKKYELRAPVAGTCYQAEWD 174 >6GAW-Bb nrPDB Length = 380 Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 25/123 (20%) Query: 25 FTPTTKMNVSYNKKQ-----VSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVM------- 72 F P ++V+Y + V +G+E+ P+ + P V + D S +TL++ Sbjct: 167 FVPRVPLHVAYAVGEDDLMPVYHGNEVTPTEAAQAPEV-TYEADEGSLWTLLLTNLDGHL 225 Query: 73 IDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPS--IGIHRFVFVLFRQ 130 ++PD E++HW+VTNIPG T G+E Y P P+ G HRF F+LF+Q Sbjct: 226 LEPDA---------EYVHWLVTNIPGNR-VTEGQETCPYLPPFPARGSGFHRFAFLLFKQ 275 Query: 131 KQR 133 +R Sbjct: 276 DKR 278 >3J9M-6 nrPDB Length = 380 Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 23/121 (19%) Query: 25 FTPTTKMNVSYNKKQ-----VSNGHELFPSSVSSKPRV--EIHGGDLRSFFTLV----MI 73 F P ++V+Y + V G+E+ P+ + P V E G L + ++ Sbjct: 167 FVPRVPLHVAYAVGEDDLMPVYCGNEVTPTEAAQAPEVTYEAEEGSLWTLLLTSLDGHLL 226 Query: 74 DPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPS--IGIHRFVFVLFRQK 131 +PD E+LHW++TNIPG A G+ Y P P+ GIHR F+LF+Q Sbjct: 227 EPDA---------EYLHWLLTNIPGNRVAE-GQVTCPYLPPFPARGSGIHRLAFLLFKQD 276 Query: 132 Q 132 Q Sbjct: 277 Q 277 >1WPX-B nrPDB Length = 220 Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 29/131 (22%) Query: 67 FFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDAT---------FGKE--------VV 109 FTLVM DPD P +D E H + ++ +AT F E ++ Sbjct: 89 LFTLVMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLI 148 Query: 110 SYELPRP--SIGIHRFVFVLFRQKQ--RRVIFPNIPSRDHF-------NTRKFAVEYDLG 158 Y P P G HR+VF+L++Q + F I R ++ K+A E +L Sbjct: 149 EYMGPAPPKGSGPHRYVFLLYKQPKGVDSSKFSKIKDRPNWGYGTPATGVGKWAKENNLQ 208 Query: 159 LPVAAVFFNAQ 169 L VA+ FF A+ Sbjct: 209 L-VASNFFYAE 218 >5MRC-1 nrPDB Length = 348 Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 40/182 (21%) Query: 12 LIMGRV-----VGDVLDFFTPTTKMNVSYN-----KKQVSNGHELFPSSVSSKPRVEIHG 61 L+M R+ + D L P ++N+ + K + G L + S +P +I Sbjct: 135 LLMQRLETLAAIPDTLPTLVPRAEVNIKFPFSTGVNKWIEPGEFLSSNVTSMRPIFKIQE 194 Query: 62 GDL----RSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATF-------GKEVVS 110 +L + +T+++++PDVP S+ K L + + NI T + +++ Sbjct: 195 YELVNVEKQLYTVLIVNPDVPDLSNDSFKTALCYGLVNINLTYNDNLIDPRKFHSSNIIA 254 Query: 111 YEL---PRPSIGIHRFVFVLFRQ-----KQRRVIFPNI-------PSRDHFNTRKFAVEY 155 L P + G RFV +FRQ KQ PN+ SRD F+ R+F +Y Sbjct: 255 DYLPPVPEKNAGKQRFVVWVFRQPLIEDKQG----PNMLEIDRKELSRDDFDIRQFTKKY 310 Query: 156 DL 157 +L Sbjct: 311 NL 312 >2R77-A nrPDB Length = 205 Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 10/91 (10%) Query: 68 FTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKE-----VVSYELP--RPSIGI 120 F L M+DPD P P KE++HW+V+ I T + G + ++ Y P + G+ Sbjct: 86 FVLFMVDPDYPSRLRPDGKEYIHWVVSGIK-TKELIKGTQKNCVTILPYVGPSIKKGTGL 144 Query: 121 HRFVFVLFRQKQRRVIFPNIPSRDHFNTRKF 151 HR F++ K+ NI H+ K+ Sbjct: 145 HRISFIISLIKEEDK--DNITGLPHYKGEKY 173 >4X2Q-A nrPDB Length = 504 Score = 29.3 bits (64), Expect = 0.90, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 9/64 (14%) Query: 16 RVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDL--RSFFTLVMI 73 RVVG D PTT+ +KKQ + EL S V+ ++E G L + FF I Sbjct: 333 RVVGSPFD---PTTEQGPQIDKKQYNKILELIQSGVAEGAKLECGGKGLGRKGFF----I 385 Query: 74 DPDV 77 +P V Sbjct: 386 EPTV 389 >2BO9-B nrPDB Length = 222 Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 7/61 (11%) Query: 94 TNIPGTTDATFGKEVVSYELPRPSIGIHRFVFVLFRQKQRRVIFPNIPSRDHFNTRKFAV 153 TN P + A + ++Y+ P HR V QK ++ +IP R H KFAV Sbjct: 6 TNYPASRAALVAQNYINYQQGTP----HRVFEV---QKVKQASMEDIPGRGHKYRLKFAV 58 Query: 154 E 154 E Sbjct: 59 E 59 >1FUX-A nrPDB Length = 166 Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust. Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 5/32 (15%) Query: 68 FTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGT 99 F + + DPD P S + HW V NIP T Sbjct: 48 FAVTVYDPDAPTGSGWW-----HWTVVNIPAT 74 >1GY8-A nrPDB Length = 397 Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 4 MGTRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGD 63 G+ + P+I+GRV+ D+ T + S +K+ G + +P+ + R +H D Sbjct: 219 QGSTHLIPIILGRVMSDIAPDQRLTIHEDASTDKRMPIFGTD-YPTPDGTCVRDYVHVCD 277 Query: 64 LRSFFTLVMIDPDVPGPSD 82 L S L + + GP+D Sbjct: 278 LASAHILALDYVEKLGPND 296 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 1WKO-A nrPDB 276 3e-75 1QOU-A nrPDB 241 1e-64 1WKP-A nrPDB 233 3e-62 3AXY-A nrPDB 226 4e-60 2IQX-A nrPDB 201 1e-52 6ENS-A nrPDB 200 3e-52 1A44-A nrPDB 200 3e-52 1KN3-A nrPDB 198 1e-51 1BEH-A nrPDB 198 1e-51 5MRC-1 nrPDB 146 6e-36 6GAW-Bb nrPDB 130 4e-31 1WPX-B nrPDB 114 2e-26 3J9M-6 nrPDB 111 2e-25 2R77-A nrPDB 106 4e-24 Sequences not found previously or not previously below threshold: 1FUX-A nrPDB 44 3e-05 4BEG-A nrPDB 38 0.002 6HIV-Ab nrPDB 35 0.018 3EYB-A nrPDB 30 0.43 5XF1-A nrPDB 30 0.79 5FGU-A nrPDB 29 0.84 2BO9-B nrPDB 29 1.6 2VF8-A nrPDB 28 1.9 4LF3-C nrPDB 28 2.2 2WAN-A nrPDB 27 4.5 1ZQ1-C nrPDB 27 4.6 >1WKO-A nrPDB Length = 180 Score = 276 bits (706), Expect = 3e-75, Method: Composition-based stats. Identities = 177/177 (100%), Positives = 177/177 (100%) Query: 1 MENMGTRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIH 60 MENMGTRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIH Sbjct: 4 MENMGTRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIH 63 Query: 61 GGDLRSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGI 120 GGDLRSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGI Sbjct: 64 GGDLRSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGI 123 Query: 121 HRFVFVLFRQKQRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 177 HRFVFVLFRQKQRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR Sbjct: 124 HRFVFVLFRQKQRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 180 >1QOU-A nrPDB Length = 181 Score = 241 bits (614), Expect = 1e-64, Method: Composition-based stats. Identities = 123/174 (70%), Positives = 149/174 (85%), Gaps = 6/174 (3%) Query: 10 EPLIMGRVVGDVLDFFTPTTKMNVSYNK----KQVSNGHELFPSSVSSKPRVEIHGGDLR 65 +PL++GRV+GDV+D FT T KM+V YN K V NGHELFPS+V+S PRVE+HGGD+R Sbjct: 8 DPLVIGRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDMR 67 Query: 66 SFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFVF 125 SFFTL+M DPDVPGPSDP+L+EHLHWIVT+IPGTTD++FGKEVVSYE+PRP+IGIHRFVF Sbjct: 68 SFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIHRFVF 127 Query: 126 VLFRQKQR--RVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 177 +LF+QK+R ++ P + RD FNTRKF E +LGLPVAAVFFN QRETAAR+R Sbjct: 128 LLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVAAVFFNCQRETAARRR 181 >1WKP-A nrPDB Length = 171 Score = 233 bits (594), Expect = 3e-62, Method: Composition-based stats. Identities = 98/170 (57%), Positives = 130/170 (76%), Gaps = 1/170 (0%) Query: 3 NMGTRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGG 62 +M + +PLI+ RVVGDVLD F + + V+Y +++V+NG L PS V +KPRVEI G Sbjct: 3 HMSINIRDPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLNLRPSQVQNKPRVEIGGE 62 Query: 63 DLRSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHR 122 DLR+F+TLVM+DPDVP PS+P L+E+LHW+VT+IP TT TFG E+VSYE P P+ GIHR Sbjct: 63 DLRNFYTLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVSYENPSPTAGIHR 122 Query: 123 FVFVLFRQKQRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRET 172 VF+LFRQ R+ ++ R +FNTR+FA Y+LGLPVAAVF+N+QRE+ Sbjct: 123 VVFILFRQLGRQTVYAP-GWRQNFNTREFAEIYNLGLPVAAVFYNSQRES 171 >3AXY-A nrPDB Length = 170 Score = 226 bits (575), Expect = 4e-60, Method: Composition-based stats. Identities = 99/167 (59%), Positives = 130/167 (77%), Gaps = 1/167 (0%) Query: 6 TRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLR 65 R +PL++GRVVGDVLD F +T + V+Y K VSNG EL PS V+ +PRVE+ G D+R Sbjct: 5 MRDRDPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGLELKPSMVTHQPRVEVGGNDMR 64 Query: 66 SFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFVF 125 +F+TLVM+DPD P PSDP L+E+LHW+VT+IPGTT A+FG+EV+SYE PRP++GIHR VF Sbjct: 65 TFYTLVMVDPDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMSYESPRPTMGIHRLVF 124 Query: 126 VLFRQKQRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRET 172 VLF+Q R+ ++ R +FNT+ FA Y+LG PVAAV+FN+QRE Sbjct: 125 VLFQQLGRQTVYAP-GWRQNFNTKDFAELYNLGSPVAAVYFNSQREA 170 >2IQX-A nrPDB Length = 187 Score = 201 bits (512), Expect = 1e-52, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 11/160 (6%) Query: 27 PTTKMNVSYNKKQVSN-GHELFPSSVSSKPR-VEIHGGDLRSFFTLVMIDPDVPGPSDPF 84 P + V Y V G L P+ V ++P + G D +TLV+ DPD P DP Sbjct: 21 PQHALRVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPK 80 Query: 85 LKEHLHWIVTNIPGTTDATFGKEVVSY--ELPRPSIGIHRFVFVLFRQKQ-RRVIFPNIP 141 +E H++V N+ G D + G + Y P G+HR+V++++ Q+Q P + Sbjct: 81 FREWHHFLVVNMKG-NDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILS 139 Query: 142 SRDH-----FNTRKFAVEYDLGLPVAAVFFNAQRETAARK 176 ++ F +F +Y LG PVA F A+ + + K Sbjct: 140 NKSGDNRGKFKVEEFRKKYHLGAPVAGTCFQAEWDDSVPK 179 >6ENS-A nrPDB Length = 193 Score = 200 bits (509), Expect = 3e-52, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 11/160 (6%) Query: 27 PTTKMNVSYNKKQVSN-GHELFPSSVSSKPR-VEIHGGDLRSFFTLVMIDPDVPGPSDPF 84 P + V Y V G L P+ V ++P + G D +TLV+ DPD P DP Sbjct: 27 PQHALRVDYAGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPK 86 Query: 85 LKEHLHWIVTNIPGTTDATFGKEVVSY--ELPRPSIGIHRFVFVLFRQKQ-RRVIFPNIP 141 +E H++V N+ G D + G + Y P G+HR+V++++ Q+Q P + Sbjct: 87 FREWHHFLVVNMKG-NDISSGTVLSDYVGSGPPSGTGLHRYVWLVYEQEQPLSCDEPILS 145 Query: 142 SRDHFNTRK-----FAVEYDLGLPVAAVFFNAQRETAARK 176 ++ N K F +Y+LG PVA + A+ + K Sbjct: 146 NKSGDNRGKFKVETFRKKYNLGAPVAGTCYQAEWDDYVPK 185 >1A44-A nrPDB Length = 185 Score = 200 bits (509), Expect = 3e-52, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 11/160 (6%) Query: 27 PTTKMNVSYNKKQVSN-GHELFPSSVSSKP-RVEIHGGDLRSFFTLVMIDPDVPGPSDPF 84 P + V Y +V G L P+ V ++P + G D +TLV+ DPD P DP Sbjct: 20 PQHPLQVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLTDPDAPSRKDPK 79 Query: 85 LKEHLHWIVTNIPGTTDATFGKEVVSY--ELPRPSIGIHRFVFVLFRQ----KQRRVIFP 138 +E H++V N+ G + G + Y P G+HR+V++++ Q K I Sbjct: 80 YREWHHFLVVNMKGNN-ISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILS 138 Query: 139 NIPS--RDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARK 176 N R F F +Y+LG PVA + A+ + K Sbjct: 139 NRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWDDYVPK 178 >1KN3-A nrPDB Length = 183 Score = 198 bits (503), Expect = 1e-51, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 11/160 (6%) Query: 27 PTTKMNVSYNKKQVSN-GHELFPSSVSSKP-RVEIHGGDLRSFFTLVMIDPDVPGPSDPF 84 P + V+Y + +V G L P+ V +P + G D +TL++ DPD P P Sbjct: 17 PQHLLRVTYTEAEVEELGQVLTPTQVKHRPGSISWDGLDPGKLYTLILTDPDAPSRKKPV 76 Query: 85 LKEHLHWIVTNIPGTTDATFGKEVVSY--ELPRPSIGIHRFVFVLFRQKQ-RRVIFPNIP 141 +E H++V N+ G D + G + Y P G+HR+V+++++Q + R P + Sbjct: 77 YREWHHFLVVNMKG-NDISSGNVLSDYVGSGPPKGTGLHRYVWLVYQQDKPLRCDEPILT 135 Query: 142 SRDH-----FNTRKFAVEYDLGLPVAAVFFNAQRETAARK 176 +R F T F +Y LG PVA + A+ ++ K Sbjct: 136 NRSGDHRGKFKTAAFRKKYHLGAPVAGTCYQAEWDSYVPK 175 >1BEH-A nrPDB Length = 187 Score = 198 bits (503), Expect = 1e-51, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 11/160 (6%) Query: 27 PTTKMNVSYNKKQVSN-GHELFPSSVSSKP-RVEIHGGDLRSFFTLVMIDPDVPGPSDPF 84 P ++V+Y V G L P+ V ++P + G D +TLV+ DPD P DP Sbjct: 21 PQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPK 80 Query: 85 LKEHLHWIVTNIPGTTDATFGKEVVSY--ELPRPSIGIHRFVFVLFRQK-QRRVIFPNIP 141 +E H++V N+ G D + G + Y P G+HR+V++++ Q + P + Sbjct: 81 YREWHHFLVVNMKG-NDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILS 139 Query: 142 SRDH-----FNTRKFAVEYDLGLPVAAVFFNAQRETAARK 176 +R F F +Y+L PVA + A+ + K Sbjct: 140 NRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPK 179 >5MRC-1 nrPDB Length = 348 Score = 146 bits (367), Expect = 6e-36, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 81/195 (41%), Gaps = 33/195 (16%) Query: 12 LIMGRV-----VGDVLDFFTPTTKMNVSYN-----KKQVSNGHELFPSSVSSKPRVEIHG 61 L+M R+ + D L P ++N+ + K + G L + S +P +I Sbjct: 135 LLMQRLETLAAIPDTLPTLVPRAEVNIKFPFSTGVNKWIEPGEFLSSNVTSMRPIFKIQE 194 Query: 62 GDL----RSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDAT--------FGKEVV 109 +L + +T+++++PDVP S+ K L + + NI T + + Sbjct: 195 YELVNVEKQLYTVLIVNPDVPDLSNDSFKTALCYGLVNINLTYNDNLIDPRKFHSSNIIA 254 Query: 110 SYEL--PRPSIGIHRFVFVLFRQKQ-RRVIFPNI-------PSRDHFNTRKFAVEYDLGL 159 Y P + G RFV +FRQ PN+ SRD F+ R+F +Y+L Sbjct: 255 DYLPPVPEKNAGKQRFVVWVFRQPLIEDKQGPNMLEIDRKELSRDDFDIRQFTKKYNLTA 314 Query: 160 PVAAVFFNAQRETAA 174 + A + ++ + Sbjct: 315 -IGAHIWRSEWDAKV 328 >6GAW-Bb nrPDB Length = 380 Score = 130 bits (326), Expect = 4e-31, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 19/168 (11%) Query: 24 FFTPTTKMNVSYNKKQ-----VSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMIDPDVP 78 F P ++V+Y + V +G+E+ P+ + P V + D S +TL++ + D Sbjct: 166 TFVPRVPLHVAYAVGEDDLMPVYHGNEVTPTEAAQAPEVT-YEADEGSLWTLLLTNLDG- 223 Query: 79 GPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRP--SIGIHRFVFVLFRQKQRRVI 136 +P E++HW+VTNIPG T G+E Y P P G HRF F+LF+Q +R Sbjct: 224 HLLEPD-AEYVHWLVTNIPGNR-VTEGQETCPYLPPFPARGSGFHRFAFLLFKQDKRIDF 281 Query: 137 FPNIPSRDHFNTRK--------FAVEYDLGLPVAAVFFNAQRETAARK 176 + + + + D P FF + + + + Sbjct: 282 SGDTRPSPCYQLAQRTFHTFDFYKKHQDAMTPAGLAFFQCRWDDSVTR 329 >1WPX-B nrPDB Length = 220 Score = 114 bits (285), Expect = 2e-26, Method: Composition-based stats. Identities = 49/201 (24%), Positives = 76/201 (37%), Gaps = 47/201 (23%) Query: 13 IMGRVVGDVLDFFTPTTKMNVSYNK-KQVSNGHELFPSSVSSKPRVEIHGGDLRS----- 66 I+ V+ D F P+ + V Y+ V+ G+ L SKP+ + Sbjct: 21 ILEDVIHDT--SFQPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQ 78 Query: 67 ----------FFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATF------------ 104 FTLVM DPD P +D E H + ++ +AT Sbjct: 79 ANAYVPQDDDLFTLVMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASE 138 Query: 105 -----GKEVVSYEL--PRPSIGIHRFVFVLFRQKQ--RRVIFPNIPSRDHF-------NT 148 ++ Y P G HR+VF+L++Q + F I R ++ Sbjct: 139 FNTKGSNTLIEYMGPAPPKGSGPHRYVFLLYKQPKGVDSSKFSKIKDRPNWGYGTPATGV 198 Query: 149 RKFAVEYDLGLPVAAVFFNAQ 169 K+A E +L L VA+ FF A+ Sbjct: 199 GKWAKENNLQL-VASNFFYAE 218 >3J9M-6 nrPDB Length = 380 Score = 111 bits (277), Expect = 2e-25, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 31/172 (18%) Query: 24 FFTPTTKMNVSYNKKQ-----VSNGHELFPSSVSSKPRVEIHGGDLRSFFTLV------M 72 F P ++V+Y + V G+E+ P+ + P V + + L+ + Sbjct: 166 TFVPRVPLHVAYAVGEDDLMPVYCGNEVTPTEAAQAPEVTYEAEEGSLWTLLLTSLDGHL 225 Query: 73 IDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRP--SIGIHRFVFVLFRQ 130 ++PD E+LHW++TNIPG A G+ Y P P GIHR F+LF+Q Sbjct: 226 LEPDA---------EYLHWLLTNIPGNRVAE-GQVTCPYLPPFPARGSGIHRLAFLLFKQ 275 Query: 131 KQRRVIFPNIPSRDHFNTRK--------FAVEYDLGLPVAAVFFNAQRETAA 174 Q + + + + + P FF + + + Sbjct: 276 DQPIDFSEDARPSPCYQLAQRTFRTFDFYKKHQETMTPAGLSFFQCRWDDSV 327 >2R77-A nrPDB Length = 205 Score = 106 bits (265), Expect = 4e-24, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 24/174 (13%) Query: 2 ENM---GTRVIEPLIMGRVVGDVLDFFTPTTKMNVSY-----NKKQVSNGHELFPSSVSS 53 EN+ G I L R++ V +NV K+V++G+ L + S Sbjct: 12 ENLYFQGIPTISELKKDRIIPHVFP--NDKIDLNVDLFISFKAGKEVNHGNVLDIAGTGS 69 Query: 54 KPR-VEIHGGDL-RSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKE---- 107 PR ++ F L M+DPD P P KE++HW+V+ I T + G + Sbjct: 70 VPRNIKFSEEPPDGYCFVLFMVDPDYPSRLRPDGKEYIHWVVSGIK-TKELIKGTQKNCV 128 Query: 108 -VVSYELP--RPSIGIHRFVFVLFRQKQRRVIFPNIPSRDHFNTRKF--AVEYD 156 ++ Y P + G+HR F++ K+ NI H+ K+ V+++ Sbjct: 129 TILPYVGPSIKKGTGLHRISFIISLIKEEDKD--NITGLPHYKGEKYITRVKFN 180 >1FUX-A nrPDB Length = 166 Score = 43.9 bits (102), Expect = 3e-05, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 42/140 (30%), Gaps = 38/140 (27%) Query: 36 NKKQVSNGHELFPSSV---------SSKPRVEIHGGDLR-SFFTLVMIDPDVPGPSDPFL 85 ++ G +L S V ++ P + G F + + DPD P S Sbjct: 6 TSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTGSG--- 62 Query: 86 KEHLHWIVTNIPGT-----------------TDATFGKEVVSYEL-----PRPSIGIHRF 123 HW V NIP T T A G+ Y P H + Sbjct: 63 --WWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHY 120 Query: 124 VFVLFRQKQRR-VIFPNIPS 142 F ++ K + + N Sbjct: 121 QFKVWALKTEKIPVDSNSSG 140 >4BEG-A nrPDB Length = 178 Score = 38.2 bits (87), Expect = 0.002, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 26/105 (24%) Query: 55 PRVEIHGG-DLRSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGT-----TDATFGKEV 108 P++ G F + + DPD P S HW V N+P G+E+ Sbjct: 50 PQLRWSGFPSETRSFAVTVYDPDAPTLSG-----FWHWAVANLPANVTELPEGVGDGREL 104 Query: 109 VS-------------YEL--PRPSIGIHRFVFVLFRQKQRRVIFP 138 Y P P G+HR+ + K ++ P Sbjct: 105 PGGALTLVNDAGMRRYVGAAPPPGHGVHRYYVAVHAVKVEKLDLP 149 >6HIV-Ab nrPDB Length = 507 Score = 35.1 bits (79), Expect = 0.018, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 58/198 (29%), Gaps = 71/198 (35%) Query: 47 FPSSVSSKPRVEIHGGDLRS---FFTLVMIDPDVPGPSDPFLKE------HLHWIVTNIP 97 S+ VE + S ++TL++ PD P + L+++++N+ Sbjct: 226 TVSATGQGKAVEKDATEEGSDEVWYTLIIASPDYPFRVPASVDASTQRGFFLNYMMSNLK 285 Query: 98 GTTDAT-------------------------------FGKEVVSYELPRPS--IGIHRFV 124 G ++T G +VSY P P+ G R + Sbjct: 286 GGGNSTVLEEYESEQRQNNQKRQHLEELVRNPAPIAKEGDVIVSYTPPLPTEDAGTTRHI 345 Query: 125 FVLFRQKQRRVIFPNIPSRDHFNTRKFAVEYDLGL------------------------- 159 +LF+Q R + FA + L Sbjct: 346 CMLFKQ---RSYVSGASCALDDSKASFAARANFRLHAQHRDGIPSSSVEMLSRIEQVLPP 402 Query: 160 -PVAAVFFNAQRETAARK 176 P A FF + + ++ Sbjct: 403 DPSAVTFFQTKWDIQVQE 420 >3EYB-A nrPDB Length = 219 Score = 30.5 bits (67), Expect = 0.43, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Query: 44 HELFPSSVSSKPRVEIHGGDLRSFFTLVMIDPDVPGPSDPFLKEHL 89 L + +++ +L +V+ +PD G +DP L E L Sbjct: 112 RVLTELVAKMR-DMKMDKTELGCLRAIVLFNPDAKGLTDPSLVESL 156 >5XF1-A nrPDB Length = 574 Score = 29.7 bits (65), Expect = 0.79, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 11/78 (14%) Query: 54 KPRVEIHGGDLRSFF------TLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKE 107 P+V + + L ++ P + ++ W P T T Sbjct: 2 APQVMDFLFEKWKLYGDQCHHNLSLLPPPTELVCNRTFDKYSCW-----PDTPANTTANI 56 Query: 108 VVSYELPRPSIGIHRFVF 125 + LP HRFVF Sbjct: 57 SCPWYLPWHHKVQHRFVF 74 >5FGU-A nrPDB Length = 567 Score = 29.3 bits (64), Expect = 0.84, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 17/38 (44%) Query: 14 MGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSV 51 M + VLD K++V Y V G EL P +V Sbjct: 398 MQYIENKVLDHIKRNPKVHVYYKATPVYQGSELLPRAV 435 >2BO9-B nrPDB Length = 222 Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 7/72 (9%) Query: 94 TNIPGTTDATFGKEVVSYELPRPSIGIHRFVFVLFRQKQRRVIFPNIPSRDHFNTRKFAV 153 TN P + A + ++Y+ P HR VF + QK ++ +IP R H KFAV Sbjct: 6 TNYPASRAALVAQNYINYQQGTP----HR-VFEV--QKVKQASMEDIPGRGHKYRLKFAV 58 Query: 154 EYDLGLPVAAVF 165 E + V Sbjct: 59 EEIIQKQVKVNC 70 >2VF8-A nrPDB Length = 842 Score = 28.1 bits (61), Expect = 1.9, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 16/80 (20%) Query: 14 MGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMI 73 +GRV D P + +V++ P+ G + R + I Sbjct: 157 LGRVYTVTEDSMVP-------------DPSLTIRERAVAAWPQ-AWGGQNQRDILVTLGI 202 Query: 74 DPDVPGPSDPFLKEHLHWIV 93 D DVP P E HWI+ Sbjct: 203 DVDVPWRELPE--ETRHWIL 220 >4LF3-C nrPDB Length = 95 Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 11/69 (15%) Query: 63 DLRSFFT------LVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRP 116 + ++ L ++ P + ++ W P T T + LP Sbjct: 6 EKWKLYSDQCHHNLSLLPPPTELVCNRTFDKYSCW-----PDTPANTTANISCPWYLPWH 60 Query: 117 SIGIHRFVF 125 HRFVF Sbjct: 61 HKVQHRFVF 69 >2WAN-A nrPDB Length = 921 Score = 27.0 bits (58), Expect = 4.5, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Query: 28 TTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFT 69 T ++V+ + H + P +V + PR + G DL + ++ Sbjct: 285 THNLDVAADG---YKAHNILPRNVLNLPRYDYSGNDLGNVYS 323 >1ZQ1-C nrPDB Length = 633 Score = 27.0 bits (58), Expect = 4.6, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 17/39 (43%) Query: 133 RRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRE 171 ++ I N+P ++ EY L +A + +R+ Sbjct: 448 KKKIKENLPELPQAKVERYVKEYKLDRSLAQTLVDDERD 486 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.304 0.130 0.343 Lambda K H 0.267 0.0403 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,858,125 Number of Sequences: 36641 Number of extensions: 260839 Number of successful extensions: 621 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 521 Number of HSP's gapped (non-prelim): 46 length of query: 177 length of database: 10,336,785 effective HSP length: 91 effective length of query: 86 effective length of database: 7,002,454 effective search space: 602211044 effective search space used: 602211044 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 56 (26.2 bits)