BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P87310
(144 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
5N9J-B nrPDB 290 1e-79
5OQM-k nrPDB 68 1e-12
5Z1F-A nrPDB 29 0.67
3PB0-A nrPDB 28 1.1
3TQX-A nrPDB 27 2.2
3I5H-A nrPDB 27 3.5
4K7R-A nrPDB 27 3.8
6E8E-B nrPDB 27 4.3
5X06-A nrPDB 27 4.4
3QBD-A nrPDB 26 4.8
4DMO-A nrPDB 26 5.3
1BGX-T nrPDB 26 6.1
2QSG-A nrPDB 26 6.8
6NS2-A nrPDB 26 7.3
6NVA-A nrPDB 26 7.7
3G0S-A nrPDB 25 9.2
>5N9J-B nrPDB
Length = 144
Score = 290 bits (743), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MLPQDDMTDEMKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPD 60
MLPQDDMTDEMKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPD
Sbjct: 1 MLPQDDMTDEMKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPD 60
Query: 61 ISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGFQKAFAEEIK 120
ISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGFQKAFAEEIK
Sbjct: 61 ISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGFQKAFAEEIK 120
Query: 121 QAYPEVSSVVDKILNEGKVESTVS 144
QAYPEVSSVVDKILNEGKVESTVS
Sbjct: 121 QAYPEVSSVVDKILNEGKVESTVS 144
>5OQM-k nrPDB
Length = 157
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 74/140 (52%), Gaps = 18/140 (12%)
Query: 7 MTDEMKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPDISRKVN 66
+ E+ + ++ ++F +L + +Y+ T PE+ +I +L+ D K+N
Sbjct: 11 LQQELATTQDQVASIIESFVELGVSIYDFPGT------PEATKGMITNLQRNVDRLYKLN 64
Query: 67 NL------------IPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGFQKA 114
IP +V++YIE GRNPD+Y R+F E +++ NQY GK++ ++ + +
Sbjct: 65 VRSNDPQSSLSKVDIPLEVVQYIEDGRNPDIYTREFVEAIRRSNQYQRGKMHGLKQLRDS 124
Query: 115 FAEEIKQAYPEVSSVVDKIL 134
A++I +PE+ V+ I+
Sbjct: 125 LADKIVDEFPELKEPVEDII 144
>5Z1F-A nrPDB
Length = 724
Score = 29.3 bits (64), Expect = 0.67, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 11/77 (14%)
Query: 41 SDAIPESLDTLIRDLKSLPDISRKVNNLIPQDVLEYIEQGRNPDVYARQF-SELVQKDNQ 99
+D PE L+RD+ + PD Q E+I+ ++Y F LV +N
Sbjct: 185 ADVKPEQFAILVRDMPAPPD---------GQTQKEFIDSYFR-EIYPETFYRSLVATENS 234
Query: 100 YVNGKLYAIEGFQKAFA 116
VN +EG++K A
Sbjct: 235 KVNKIWEKLEGYKKKLA 251
>3PB0-A nrPDB
Length = 300
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 27 DLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPDI 61
DL ++VYN+ T + +PE+ + DLK++ I
Sbjct: 132 DLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGI 166
>3TQX-A nrPDB
Length = 399
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 47 SLDTLIRDLKSLPDISRKVNNLIPQD---VLEYI-EQGRNPDVYA 87
S+D +I DLKS+ D++ K N L+ D + +I E GR Y
Sbjct: 186 SMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYC 230
>3I5H-A nrPDB
Length = 839
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 12/42 (28%)
Query: 75 EYIEQGRNPD------------VYARQFSELVQKDNQYVNGK 104
EY+ QGRN D +Y R F+ LV++ NQ ++ K
Sbjct: 411 EYVTQGRNKDQVTNSIAALAKSLYDRMFNWLVRRVNQTLDTK 452
>4K7R-A nrPDB
Length = 446
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 40 PSDAIPESLDTLIRDLKSLPDISRKVNNLIPQDVLEYIEQGRN 82
PS ++ + T DL SL + S + N IP+ + GRN
Sbjct: 289 PSISLTSGISTASSDLSSLFNASSGMWNFIPKIEIPIFNAGRN 331
>6E8E-B nrPDB
Length = 517
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 47 SLDTL-IRDLKSLPDISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKL 105
SL TL D +L D +V +PQ ++ + + A QFS Q Y+NG L
Sbjct: 145 SLSTLPAADFPNLDDWQSEVEFTLPQATMKRL-------IEATQFSMAHQDVRYYLNGML 197
Query: 106 YAIEG 110
+ EG
Sbjct: 198 FETEG 202
>5X06-A nrPDB
Length = 386
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 47 SLDTL-IRDLKSLPDISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKL 105
SL TL D +L D +V +PQ ++ + + A QFS Q Y+NG L
Sbjct: 127 SLSTLPAADFPNLDDWQSEVEFTLPQATMKRL-------IEATQFSMAHQDVRYYLNGML 179
Query: 106 YAIEG 110
+ EG
Sbjct: 180 FETEG 184
>3QBD-A nrPDB
Length = 368
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 10 EMKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPDISRKV 65
E+ LA RL+D T + L L + DA+P+ L+ + D K+ + R V
Sbjct: 284 ELARLAGRLDDATAQRHRTILSSLGLPVSYDPDALPQLLEIMAGDKKTRAGVLRFV 339
>4DMO-A nrPDB
Length = 265
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 7 MTDEMKSLASRL---EDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSL 58
MTD K +RL E T +F DL+ I+Y + T P E+L+ L ++ K +
Sbjct: 3 MTDFQKQFFARLHIEEKDTVSFEDLSNIMYAMAQTVPF----ENLNILEKNFKEI 53
>1BGX-T nrPDB
Length = 832
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 113 KAFAEEIKQAYPEVSSVVDKILNEGK 138
+AF E Q++P+V + ++K L EG+
Sbjct: 690 QAFIERYFQSFPKVRAWIEKTLEEGR 715
>2QSG-A nrPDB
Length = 533
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 61 ISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELV 94
+SRK++NL+P+ V E + ++ ++ R +L+
Sbjct: 68 LSRKLSNLVPEKVFELLHPQKDEELPLRSTRKLL 101
>6NS2-A nrPDB
Length = 769
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 61 ISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGFQKAFAEEIK 120
+S + + I D LE ++G + +Q L +N ++G+L A EG +K + +
Sbjct: 43 LSSGLEHNIDHDPLEVWDKGVFLNELLKQGIALSTNENGTLDGELVADEGLKKGSYKGTR 102
Query: 121 QAYPEVSSVVD 131
A E+ S+++
Sbjct: 103 LALTEIYSILE 113
>6NVA-A nrPDB
Length = 294
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 27 DLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPDISRKVNNL 68
DL I+YN+ T D +PE++ L + +K++ I NL
Sbjct: 129 DLPQILYNVPSRTGCDLLPETVGRLAK-VKNIIGIXEATGNL 169
>3G0S-A nrPDB
Length = 316
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 27 DLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPDISRKVNNL 68
DL I+YN+ T D +PE++ L ++K++ I NL
Sbjct: 151 DLPQILYNVPSRTGCDMLPETVGRL-AEIKNIIAIKEATGNL 191
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
5N9J-B nrPDB 219 3e-58
5OQM-k nrPDB 174 8e-45
Sequences not found previously or not previously below threshold:
3PB0-A nrPDB 32 0.11
2RGN-B nrPDB 32 0.11
3CF4-A nrPDB 30 0.27
4PFM-A nrPDB 30 0.37
3I5H-A nrPDB 28 1.3
5T1Q-A nrPDB 27 2.4
1BGX-T nrPDB 27 2.5
1PKP-A nrPDB 27 3.3
2YY5-A nrPDB 27 3.6
2UVK-A nrPDB 27 4.1
2OGF-A nrPDB 26 5.2
3R7W-B nrPDB 26 5.4
6AP1-H nrPDB 26 7.4
CONVERGED!
>5N9J-B nrPDB
Length = 144
Score = 219 bits (558), Expect = 3e-58, Method: Composition-based stats.
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MLPQDDMTDEMKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPD 60
MLPQDDMTDEMKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPD
Sbjct: 1 MLPQDDMTDEMKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPD 60
Query: 61 ISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGFQKAFAEEIK 120
ISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGFQKAFAEEIK
Sbjct: 61 ISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGFQKAFAEEIK 120
Query: 121 QAYPEVSSVVDKILNEGKVESTVS 144
QAYPEVSSVVDKILNEGKVESTVS
Sbjct: 121 QAYPEVSSVVDKILNEGKVESTVS 144
>5OQM-k nrPDB
Length = 157
Score = 174 bits (442), Expect = 8e-45, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 75/142 (52%), Gaps = 18/142 (12%)
Query: 5 DDMTDEMKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPDISRK 64
+ + E+ + ++ ++F +L + +Y+ T PE+ +I +L+ D K
Sbjct: 9 EQLQQELATTQDQVASIIESFVELGVSIYDFPGT------PEATKGMITNLQRNVDRLYK 62
Query: 65 VNNL------------IPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGFQ 112
+N IP +V++YIE GRNPD+Y R+F E +++ NQY GK++ ++ +
Sbjct: 63 LNVRSNDPQSSLSKVDIPLEVVQYIEDGRNPDIYTREFVEAIRRSNQYQRGKMHGLKQLR 122
Query: 113 KAFAEEIKQAYPEVSSVVDKIL 134
+ A++I +PE+ V+ I+
Sbjct: 123 DSLADKIVDEFPELKEPVEDII 144
>3PB0-A nrPDB
Length = 300
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 27 DLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPDI 61
DL ++VYN+ T + +PE+ + DLK++ I
Sbjct: 132 DLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGI 166
>2RGN-B nrPDB
Length = 354
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 8/122 (6%)
Query: 7 MTDEMKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPDISRKVN 66
+ M L+ +E DL IV T + +PESL R + + +
Sbjct: 10 LERSMYVLSELVETEKMYVDDLGQIVEGYMATMAAQGVPESLRGRDRIVFGNIQQIYEWH 69
Query: 67 NLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYV------NGKLYAIEGFQKAFAEEIK 120
L+ ++PD A+ F + ++ + YV + + F ++ EE++
Sbjct: 70 RDYFLQELQRCL--KDPDWLAQLFIKHERRLHMYVVYCQNKPKSEHVVSEFGDSYFEELR 127
Query: 121 QA 122
Q
Sbjct: 128 QQ 129
>3CF4-A nrPDB
Length = 807
Score = 30.5 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 7 MTDEMKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPDISRKVN 66
M+ E+K + S + D +IV + E D +PE+ I + S P I +
Sbjct: 302 MSKELKVIRSGMPD---------VIVVD-EQCVRGDIVPEAQKLKIPVIASNPKIMYGLP 351
Query: 67 NLIPQDVLEYIEQ 79
N DV E +E+
Sbjct: 352 NRTDADVDETMEE 364
>4PFM-A nrPDB
Length = 295
Score = 30.1 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
Query: 22 TQAFYDLALIVYNLEDTTPSDAIPESLDTL--------IRDLKSLPDISRKVNNLIPQDV 73
A D+ I+YN+ T D +PE++ L ++D +++ +L D
Sbjct: 123 VAASTDIPQILYNVPGRTAVDMLPETIAQLVEVPNIIGVKDATGDVARVKQLRDLCGNDF 182
Query: 74 LEYIEQGRNPDVYARQFSEL 93
L Y D AR+F L
Sbjct: 183 LLYSGD----DATAREFLTL 198
>3I5H-A nrPDB
Length = 839
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 12/42 (28%)
Query: 75 EYIEQGRNPD------------VYARQFSELVQKDNQYVNGK 104
EY+ QGRN D +Y R F+ LV++ NQ ++ K
Sbjct: 411 EYVTQGRNKDQVTNSIAALAKSLYDRMFNWLVRRVNQTLDTK 452
>5T1Q-A nrPDB
Length = 359
Score = 27.4 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 19 EDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPDISRKVNNLIPQDVLEYIE 78
D + D +Y + +D+ ++ L + + P+ ++K+N++I L +
Sbjct: 153 SDLIKNGIDGNRTIYKPTWKSEADSYKDATSHLSKTYATDPNYAKKLNSIIKHYQLTQFD 212
Query: 79 QGRNPDV--YARQFSELVQKDNQY 100
R PD+ Y R + +++
Sbjct: 213 DERMPDLDKYERSIKDYDDSSDEF 236
>1BGX-T nrPDB
Length = 832
Score = 27.4 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 44/92 (47%), Gaps = 26/92 (28%)
Query: 71 QDVLEYIEQGRNPDVYA----------RQFSE-LVQKDNQYVN-GKLYAIEGFQ------ 112
++++ ++GR D++ R+ + L+++ + +N G LY + +
Sbjct: 626 ENLIRVFQEGR--DIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELA 683
Query: 113 ------KAFAEEIKQAYPEVSSVVDKILNEGK 138
+AF E Q++P+V + ++K L EG+
Sbjct: 684 IPYEEAQAFIERYFQSFPKVRAWIEKTLEEGR 715
>1PKP-A nrPDB
Length = 150
Score = 27.0 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 37 DTTPSDAIPESLDTLIRDLKSLPDISRKVNNLIPQDVLEYIEQG 80
T + +PE++ I D K V IP +V+ + G
Sbjct: 49 GTGKAQEVPEAIRKAIEDAKKNLIEVPIVGTTIPHEVIGHFGAG 92
>2YY5-A nrPDB
Length = 348
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 36 EDTTPSDAIPESLDTLIRDLKSLPDISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQ 95
D P + L RDL K+ +PQ ++ + R D++ ++ +
Sbjct: 148 PDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQ-FVQNKDTNRIMDLF--DPTKKMS 204
Query: 96 KDNQYVNGKLYAIEGFQKAFAEEIKQA 122
K ++ NG +Y ++ ++ ++I+QA
Sbjct: 205 KSSKNQNGVIY-LDDPKEVVVKKIRQA 230
>2UVK-A nrPDB
Length = 357
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 96 KDNQYVNGKLYAIEGFQKAFAEEI 119
++N Y NGK YA EG +K+++ +I
Sbjct: 267 REN-YQNGKNYAHEGLKKSYSTDI 289
>2OGF-A nrPDB
Length = 122
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 27/109 (24%)
Query: 11 MKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSL------------ 58
K+L R + L + + T S ESL+ I +
Sbjct: 14 FKNLTDRERAVFEGGITLGALFHQFVGTPVSKYNKESLERAIEEAMKNQPCVYDIKVKIR 73
Query: 59 ---------------PDISRKVNNLIPQDVLEYIEQGRNPDVYARQFSE 92
D+ K+N + LEYI + P +Y ++F E
Sbjct: 74 NVGEKYVSLDGKMLDVDLKIKINKTVAHLKLEYIPEIDYPLMYVKKFEE 122
>3R7W-B nrPDB
Length = 331
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 48/106 (45%), Gaps = 19/106 (17%)
Query: 52 IRDLKSLPDISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGF 111
I +L + + + KVN I +VL + G + D +++Q+ + + ++G
Sbjct: 90 ITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLE--LGLDGV 147
Query: 112 Q--------------KAFAEEIKQAYPEVS---SVVDKILNEGKVE 140
Q +AF+ +++ PE+S +++D ++ K+E
Sbjct: 148 QVSFYLTSIFDHSIYEAFSRIVQKLIPELSFLENMLDNLIQHSKIE 193
>6AP1-H nrPDB
Length = 330
Score = 25.8 bits (55), Expect = 7.4, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 1 MLPQDDMTDEMKSLASRLEDTTQAF 25
+L ++D + EM +LA+ L DT +AF
Sbjct: 35 ILSEEDRSQEMTALATELLDTIEAF 59
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.307 0.130 0.329
Lambda K H
0.267 0.0380 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,939,154
Number of Sequences: 36641
Number of extensions: 181499
Number of successful extensions: 576
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 542
Number of HSP's gapped (non-prelim): 63
length of query: 144
length of database: 10,336,785
effective HSP length: 88
effective length of query: 56
effective length of database: 7,112,377
effective search space: 398293112
effective search space used: 398293112
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.5 bits)
S2: 54 (25.5 bits)