BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P87310
         (144 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

5N9J-B nrPDB                                                          290   1e-79
5OQM-k nrPDB                                                           68   1e-12
5Z1F-A nrPDB                                                           29   0.67 
3PB0-A nrPDB                                                           28   1.1  
3TQX-A nrPDB                                                           27   2.2  
3I5H-A nrPDB                                                           27   3.5  
4K7R-A nrPDB                                                           27   3.8  
6E8E-B nrPDB                                                           27   4.3  
5X06-A nrPDB                                                           27   4.4  
3QBD-A nrPDB                                                           26   4.8  
4DMO-A nrPDB                                                           26   5.3  
1BGX-T nrPDB                                                           26   6.1  
2QSG-A nrPDB                                                           26   6.8  
6NS2-A nrPDB                                                           26   7.3  
6NVA-A nrPDB                                                           26   7.7  
3G0S-A nrPDB                                                           25   9.2  

>5N9J-B nrPDB
          Length = 144

 Score =  290 bits (743), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   MLPQDDMTDEMKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPD 60
           MLPQDDMTDEMKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPD
Sbjct: 1   MLPQDDMTDEMKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPD 60

Query: 61  ISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGFQKAFAEEIK 120
           ISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGFQKAFAEEIK
Sbjct: 61  ISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGFQKAFAEEIK 120

Query: 121 QAYPEVSSVVDKILNEGKVESTVS 144
           QAYPEVSSVVDKILNEGKVESTVS
Sbjct: 121 QAYPEVSSVVDKILNEGKVESTVS 144


>5OQM-k nrPDB
          Length = 157

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 74/140 (52%), Gaps = 18/140 (12%)

Query: 7   MTDEMKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPDISRKVN 66
           +  E+ +   ++    ++F +L + +Y+   T      PE+   +I +L+   D   K+N
Sbjct: 11  LQQELATTQDQVASIIESFVELGVSIYDFPGT------PEATKGMITNLQRNVDRLYKLN 64

Query: 67  NL------------IPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGFQKA 114
                         IP +V++YIE GRNPD+Y R+F E +++ NQY  GK++ ++  + +
Sbjct: 65  VRSNDPQSSLSKVDIPLEVVQYIEDGRNPDIYTREFVEAIRRSNQYQRGKMHGLKQLRDS 124

Query: 115 FAEEIKQAYPEVSSVVDKIL 134
            A++I   +PE+   V+ I+
Sbjct: 125 LADKIVDEFPELKEPVEDII 144


>5Z1F-A nrPDB
          Length = 724

 Score = 29.3 bits (64), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 11/77 (14%)

Query: 41  SDAIPESLDTLIRDLKSLPDISRKVNNLIPQDVLEYIEQGRNPDVYARQF-SELVQKDNQ 99
           +D  PE    L+RD+ + PD          Q   E+I+     ++Y   F   LV  +N 
Sbjct: 185 ADVKPEQFAILVRDMPAPPD---------GQTQKEFIDSYFR-EIYPETFYRSLVATENS 234

Query: 100 YVNGKLYAIEGFQKAFA 116
            VN     +EG++K  A
Sbjct: 235 KVNKIWEKLEGYKKKLA 251


>3PB0-A nrPDB
          Length = 300

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 27  DLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPDI 61
           DL ++VYN+   T  + +PE+   +  DLK++  I
Sbjct: 132 DLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGI 166


>3TQX-A nrPDB
          Length = 399

 Score = 27.3 bits (59), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 47  SLDTLIRDLKSLPDISRKVNNLIPQD---VLEYI-EQGRNPDVYA 87
           S+D +I DLKS+ D++ K N L+  D    + +I E GR    Y 
Sbjct: 186 SMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYC 230


>3I5H-A nrPDB
          Length = 839

 Score = 26.9 bits (58), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 12/42 (28%)

Query: 75  EYIEQGRNPD------------VYARQFSELVQKDNQYVNGK 104
           EY+ QGRN D            +Y R F+ LV++ NQ ++ K
Sbjct: 411 EYVTQGRNKDQVTNSIAALAKSLYDRMFNWLVRRVNQTLDTK 452


>4K7R-A nrPDB
          Length = 446

 Score = 26.6 bits (57), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 40  PSDAIPESLDTLIRDLKSLPDISRKVNNLIPQDVLEYIEQGRN 82
           PS ++   + T   DL SL + S  + N IP+  +     GRN
Sbjct: 289 PSISLTSGISTASSDLSSLFNASSGMWNFIPKIEIPIFNAGRN 331


>6E8E-B nrPDB
          Length = 517

 Score = 26.6 bits (57), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 47  SLDTL-IRDLKSLPDISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKL 105
           SL TL   D  +L D   +V   +PQ  ++ +       + A QFS   Q    Y+NG L
Sbjct: 145 SLSTLPAADFPNLDDWQSEVEFTLPQATMKRL-------IEATQFSMAHQDVRYYLNGML 197

Query: 106 YAIEG 110
           +  EG
Sbjct: 198 FETEG 202


>5X06-A nrPDB
          Length = 386

 Score = 26.6 bits (57), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 47  SLDTL-IRDLKSLPDISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKL 105
           SL TL   D  +L D   +V   +PQ  ++ +       + A QFS   Q    Y+NG L
Sbjct: 127 SLSTLPAADFPNLDDWQSEVEFTLPQATMKRL-------IEATQFSMAHQDVRYYLNGML 179

Query: 106 YAIEG 110
           +  EG
Sbjct: 180 FETEG 184


>3QBD-A nrPDB
          Length = 368

 Score = 26.2 bits (56), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 10  EMKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPDISRKV 65
           E+  LA RL+D T   +   L    L  +   DA+P+ L+ +  D K+   + R V
Sbjct: 284 ELARLAGRLDDATAQRHRTILSSLGLPVSYDPDALPQLLEIMAGDKKTRAGVLRFV 339


>4DMO-A nrPDB
          Length = 265

 Score = 26.2 bits (56), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)

Query: 7  MTDEMKSLASRL---EDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSL 58
          MTD  K   +RL   E  T +F DL+ I+Y +  T P     E+L+ L ++ K +
Sbjct: 3  MTDFQKQFFARLHIEEKDTVSFEDLSNIMYAMAQTVPF----ENLNILEKNFKEI 53


>1BGX-T nrPDB
          Length = 832

 Score = 25.8 bits (55), Expect = 6.1,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 113 KAFAEEIKQAYPEVSSVVDKILNEGK 138
           +AF E   Q++P+V + ++K L EG+
Sbjct: 690 QAFIERYFQSFPKVRAWIEKTLEEGR 715


>2QSG-A nrPDB
          Length = 533

 Score = 25.8 bits (55), Expect = 6.8,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 22/34 (64%)

Query: 61  ISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELV 94
           +SRK++NL+P+ V E +   ++ ++  R   +L+
Sbjct: 68  LSRKLSNLVPEKVFELLHPQKDEELPLRSTRKLL 101


>6NS2-A nrPDB
          Length = 769

 Score = 25.8 bits (55), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 36/71 (50%)

Query: 61  ISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGFQKAFAEEIK 120
           +S  + + I  D LE  ++G   +   +Q   L   +N  ++G+L A EG +K   +  +
Sbjct: 43  LSSGLEHNIDHDPLEVWDKGVFLNELLKQGIALSTNENGTLDGELVADEGLKKGSYKGTR 102

Query: 121 QAYPEVSSVVD 131
            A  E+ S+++
Sbjct: 103 LALTEIYSILE 113


>6NVA-A nrPDB
          Length = 294

 Score = 25.8 bits (55), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 27  DLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPDISRKVNNL 68
           DL  I+YN+   T  D +PE++  L + +K++  I     NL
Sbjct: 129 DLPQILYNVPSRTGCDLLPETVGRLAK-VKNIIGIXEATGNL 169


>3G0S-A nrPDB
          Length = 316

 Score = 25.4 bits (54), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 27  DLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPDISRKVNNL 68
           DL  I+YN+   T  D +PE++  L  ++K++  I     NL
Sbjct: 151 DLPQILYNVPSRTGCDMLPETVGRL-AEIKNIIAIKEATGNL 191


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

5N9J-B nrPDB                                                          219   3e-58
5OQM-k nrPDB                                                          174   8e-45

Sequences not found previously or not previously below threshold:

3PB0-A nrPDB                                                           32   0.11 
2RGN-B nrPDB                                                           32   0.11 
3CF4-A nrPDB                                                           30   0.27 
4PFM-A nrPDB                                                           30   0.37 
3I5H-A nrPDB                                                           28   1.3  
5T1Q-A nrPDB                                                           27   2.4  
1BGX-T nrPDB                                                           27   2.5  
1PKP-A nrPDB                                                           27   3.3  
2YY5-A nrPDB                                                           27   3.6  
2UVK-A nrPDB                                                           27   4.1  
2OGF-A nrPDB                                                           26   5.2  
3R7W-B nrPDB                                                           26   5.4  
6AP1-H nrPDB                                                           26   7.4  


CONVERGED!
>5N9J-B nrPDB
          Length = 144

 Score =  219 bits (558), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   MLPQDDMTDEMKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPD 60
           MLPQDDMTDEMKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPD
Sbjct: 1   MLPQDDMTDEMKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPD 60

Query: 61  ISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGFQKAFAEEIK 120
           ISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGFQKAFAEEIK
Sbjct: 61  ISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGFQKAFAEEIK 120

Query: 121 QAYPEVSSVVDKILNEGKVESTVS 144
           QAYPEVSSVVDKILNEGKVESTVS
Sbjct: 121 QAYPEVSSVVDKILNEGKVESTVS 144


>5OQM-k nrPDB
          Length = 157

 Score =  174 bits (442), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 75/142 (52%), Gaps = 18/142 (12%)

Query: 5   DDMTDEMKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPDISRK 64
           + +  E+ +   ++    ++F +L + +Y+   T      PE+   +I +L+   D   K
Sbjct: 9   EQLQQELATTQDQVASIIESFVELGVSIYDFPGT------PEATKGMITNLQRNVDRLYK 62

Query: 65  VNNL------------IPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGFQ 112
           +N              IP +V++YIE GRNPD+Y R+F E +++ NQY  GK++ ++  +
Sbjct: 63  LNVRSNDPQSSLSKVDIPLEVVQYIEDGRNPDIYTREFVEAIRRSNQYQRGKMHGLKQLR 122

Query: 113 KAFAEEIKQAYPEVSSVVDKIL 134
            + A++I   +PE+   V+ I+
Sbjct: 123 DSLADKIVDEFPELKEPVEDII 144


>3PB0-A nrPDB
          Length = 300

 Score = 31.6 bits (70), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 27  DLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPDI 61
           DL ++VYN+   T  + +PE+   +  DLK++  I
Sbjct: 132 DLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGI 166


>2RGN-B nrPDB
          Length = 354

 Score = 31.6 bits (70), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 8/122 (6%)

Query: 7   MTDEMKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPDISRKVN 66
           +   M  L+  +E       DL  IV     T  +  +PESL    R +        + +
Sbjct: 10  LERSMYVLSELVETEKMYVDDLGQIVEGYMATMAAQGVPESLRGRDRIVFGNIQQIYEWH 69

Query: 67  NLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYV------NGKLYAIEGFQKAFAEEIK 120
                  L+     ++PD  A+ F +  ++ + YV          + +  F  ++ EE++
Sbjct: 70  RDYFLQELQRCL--KDPDWLAQLFIKHERRLHMYVVYCQNKPKSEHVVSEFGDSYFEELR 127

Query: 121 QA 122
           Q 
Sbjct: 128 QQ 129


>3CF4-A nrPDB
          Length = 807

 Score = 30.5 bits (67), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 10/73 (13%)

Query: 7   MTDEMKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPDISRKVN 66
           M+ E+K + S + D         +IV + E     D +PE+    I  + S P I   + 
Sbjct: 302 MSKELKVIRSGMPD---------VIVVD-EQCVRGDIVPEAQKLKIPVIASNPKIMYGLP 351

Query: 67  NLIPQDVLEYIEQ 79
           N    DV E +E+
Sbjct: 352 NRTDADVDETMEE 364


>4PFM-A nrPDB
          Length = 295

 Score = 30.1 bits (66), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 12/80 (15%)

Query: 22  TQAFYDLALIVYNLEDTTPSDAIPESLDTL--------IRDLKSLPDISRKVNNLIPQDV 73
             A  D+  I+YN+   T  D +PE++  L        ++D        +++ +L   D 
Sbjct: 123 VAASTDIPQILYNVPGRTAVDMLPETIAQLVEVPNIIGVKDATGDVARVKQLRDLCGNDF 182

Query: 74  LEYIEQGRNPDVYARQFSEL 93
           L Y       D  AR+F  L
Sbjct: 183 LLYSGD----DATAREFLTL 198


>3I5H-A nrPDB
          Length = 839

 Score = 28.1 bits (61), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 12/42 (28%)

Query: 75  EYIEQGRNPD------------VYARQFSELVQKDNQYVNGK 104
           EY+ QGRN D            +Y R F+ LV++ NQ ++ K
Sbjct: 411 EYVTQGRNKDQVTNSIAALAKSLYDRMFNWLVRRVNQTLDTK 452


>5T1Q-A nrPDB
          Length = 359

 Score = 27.4 bits (59), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 19  EDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPDISRKVNNLIPQDVLEYIE 78
            D  +   D    +Y     + +D+  ++   L +   + P+ ++K+N++I    L   +
Sbjct: 153 SDLIKNGIDGNRTIYKPTWKSEADSYKDATSHLSKTYATDPNYAKKLNSIIKHYQLTQFD 212

Query: 79  QGRNPDV--YARQFSELVQKDNQY 100
             R PD+  Y R   +     +++
Sbjct: 213 DERMPDLDKYERSIKDYDDSSDEF 236


>1BGX-T nrPDB
          Length = 832

 Score = 27.4 bits (59), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 44/92 (47%), Gaps = 26/92 (28%)

Query: 71  QDVLEYIEQGRNPDVYA----------RQFSE-LVQKDNQYVN-GKLYAIEGFQ------ 112
           ++++   ++GR  D++           R+  + L+++  + +N G LY +   +      
Sbjct: 626 ENLIRVFQEGR--DIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELA 683

Query: 113 ------KAFAEEIKQAYPEVSSVVDKILNEGK 138
                 +AF E   Q++P+V + ++K L EG+
Sbjct: 684 IPYEEAQAFIERYFQSFPKVRAWIEKTLEEGR 715


>1PKP-A nrPDB
          Length = 150

 Score = 27.0 bits (58), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 18/44 (40%)

Query: 37 DTTPSDAIPESLDTLIRDLKSLPDISRKVNNLIPQDVLEYIEQG 80
           T  +  +PE++   I D K        V   IP +V+ +   G
Sbjct: 49 GTGKAQEVPEAIRKAIEDAKKNLIEVPIVGTTIPHEVIGHFGAG 92


>2YY5-A nrPDB
          Length = 348

 Score = 26.6 bits (57), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 36  EDTTPSDAIPESLDTLIRDLKSLPDISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQ 95
            D  P     +    L RDL        K+   +PQ  ++  +  R  D++    ++ + 
Sbjct: 148 PDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQ-FVQNKDTNRIMDLF--DPTKKMS 204

Query: 96  KDNQYVNGKLYAIEGFQKAFAEEIKQA 122
           K ++  NG +Y ++  ++   ++I+QA
Sbjct: 205 KSSKNQNGVIY-LDDPKEVVVKKIRQA 230


>2UVK-A nrPDB
          Length = 357

 Score = 26.6 bits (57), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)

Query: 96  KDNQYVNGKLYAIEGFQKAFAEEI 119
           ++N Y NGK YA EG +K+++ +I
Sbjct: 267 REN-YQNGKNYAHEGLKKSYSTDI 289


>2OGF-A nrPDB
          Length = 122

 Score = 26.2 bits (56), Expect = 5.2,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 27/109 (24%)

Query: 11  MKSLASRLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSL------------ 58
            K+L  R     +    L  + +    T  S    ESL+  I +                
Sbjct: 14  FKNLTDRERAVFEGGITLGALFHQFVGTPVSKYNKESLERAIEEAMKNQPCVYDIKVKIR 73

Query: 59  ---------------PDISRKVNNLIPQDVLEYIEQGRNPDVYARQFSE 92
                           D+  K+N  +    LEYI +   P +Y ++F E
Sbjct: 74  NVGEKYVSLDGKMLDVDLKIKINKTVAHLKLEYIPEIDYPLMYVKKFEE 122


>3R7W-B nrPDB
          Length = 331

 Score = 26.2 bits (56), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 48/106 (45%), Gaps = 19/106 (17%)

Query: 52  IRDLKSLPDISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGF 111
           I +L  + + + KVN  I  +VL +   G + D       +++Q+  + +      ++G 
Sbjct: 90  ITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLE--LGLDGV 147

Query: 112 Q--------------KAFAEEIKQAYPEVS---SVVDKILNEGKVE 140
           Q              +AF+  +++  PE+S   +++D ++   K+E
Sbjct: 148 QVSFYLTSIFDHSIYEAFSRIVQKLIPELSFLENMLDNLIQHSKIE 193


>6AP1-H nrPDB
          Length = 330

 Score = 25.8 bits (55), Expect = 7.4,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 1  MLPQDDMTDEMKSLASRLEDTTQAF 25
          +L ++D + EM +LA+ L DT +AF
Sbjct: 35 ILSEEDRSQEMTALATELLDTIEAF 59


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.307    0.130    0.329 

Lambda     K      H
   0.267   0.0380    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,939,154
Number of Sequences: 36641
Number of extensions: 181499
Number of successful extensions: 576
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 542
Number of HSP's gapped (non-prelim): 63
length of query: 144
length of database: 10,336,785
effective HSP length: 88
effective length of query: 56
effective length of database: 7,112,377
effective search space: 398293112
effective search space used: 398293112
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.5 bits)
S2: 54 (25.5 bits)