BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P78556
(96 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
2JYO-A nrPDB 149 3e-37
1HA6-A nrPDB 101 9e-23
5EKI-A nrPDB 52 7e-08
2L4N-A nrPDB 52 8e-08
5LTL-A nrPDB 48 8e-07
2MP1-A nrPDB 47 1e-06
2X6L-A nrPDB 45 6e-06
4ZKB-B nrPDB 43 3e-05
1J9O-A nrPDB 42 5e-05
1ESR-A nrPDB 42 7e-05
1DOL-A nrPDB 41 1e-04
1NCV-A nrPDB 40 2e-04
4MHE-A nrPDB 40 3e-04
1G91-A nrPDB 40 3e-04
1G2S-A nrPDB 40 3e-04
4ZLT-F nrPDB 38 8e-04
1EOT-A nrPDB 37 0.001
2VXW-A nrPDB 37 0.002
5UIW-B nrPDB 37 0.002
2Q8T-A nrPDB 36 0.003
1HHV-A nrPDB 36 0.003
1EQT-A nrPDB 36 0.004
2Q8R-E nrPDB 36 0.004
4RWS-C nrPDB 36 0.004
2RA4-A nrPDB 36 0.005
1EIG-A nrPDB 35 0.006
4XDX-A nrPDB 34 0.011
5YAM-A nrPDB 33 0.039
5WB2-B nrPDB 32 0.047
4XT3-B nrPDB 32 0.049
1ZXT-A nrPDB 32 0.092
5L7M-A nrPDB 31 0.11
5CBA-E nrPDB 30 0.30
1QH8-B nrPDB 28 1.1
1NR4-A nrPDB 28 1.1
6CWS-A nrPDB 28 1.2
2HCC-A nrPDB 27 1.5
5WP4-A nrPDB 25 6.1
>2JYO-A nrPDB
Length = 70
Score = 149 bits (376), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 27 ASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIV 86
ASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIV
Sbjct: 1 ASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIV 60
Query: 87 RLLSKKVKNM 96
RLLSKKVKNM
Sbjct: 61 RLLSKKVKNM 70
>1HA6-A nrPDB
Length = 70
Score = 101 bits (251), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 54/70 (77%)
Query: 27 ASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIV 86
ASN+DCCL Y L + IVGFTRQ+A+E CDINAIIFHTKK+ SVCA+PKQ WVK V
Sbjct: 1 ASNYDCCLSYIQTPLPSRAIVGFTRQMADEACDINAIIFHTKKRKSVCADPKQNWVKRAV 60
Query: 87 RLLSKKVKNM 96
LLS +VK M
Sbjct: 61 NLLSLRVKKM 70
>5EKI-A nrPDB
Length = 79
Score = 51.6 bits (122), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 31 DCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKK--LSVCANPKQTWVKYIVRL 88
DCCL Y+ R + K + + +Q + GC I AI+F +K+ +CA+PK+ WV+ +++
Sbjct: 7 DCCLKYSQRKIPAKVVRSYRKQEPSLGCSIPAILFLPRKRSQAELCADPKELWVQQLMQH 66
Query: 89 LSK 91
L K
Sbjct: 67 LDK 69
>2L4N-A nrPDB
Length = 113
Score = 51.6 bits (122), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 31 DCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKK--LSVCANPKQTWVKYIVRL 88
DCCL Y+ R + K + + +Q + GC I AI+F +K+ +CA+PK+ WV+ +++
Sbjct: 7 DCCLKYSQRKIPAKVVRSYRKQEPSLGCSIPAILFLPRKRSQAELCADPKELWVQQLMQH 66
Query: 89 LSK 91
L K
Sbjct: 67 LDK 69
>5LTL-A nrPDB
Length = 100
Score = 48.1 bits (113), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVR 87
CCL Y +++L + +VG+ + L C + AIIF TK+ VC NP WV+ ++
Sbjct: 17 CCLKYYEKVLPRRLVVGYRKAL---NCHLPAIIFVTKRNREVCTNPNDDWVQEYIK 69
>2MP1-A nrPDB
Length = 77
Score = 47.4 bits (111), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 31 DCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLS 90
DCCL T + + + F L +GC + A++F T + +CA P Q WV+ I++ L
Sbjct: 7 DCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQ 66
Query: 91 KKVKNM 96
+ M
Sbjct: 67 RTSAKM 72
>2X6L-A nrPDB
Length = 69
Score = 45.4 bits (106), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLL 89
CC YT R L F+V + + C A++F TK+ VCA+P ++WV+ V L
Sbjct: 11 CCFSYTARKLPRNFVVDYYE--TSSLCSQPAVVFQTKRSKQVCADPSESWVQEYVYDL 66
>4ZKB-B nrPDB
Length = 75
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWV-KYIVRL 88
CC YT R + FI + + C +IF TK+ VCA+P + WV KY+ L
Sbjct: 10 CCFSYTSRQIPQNFIADYFE--TSSQCSKPGVIFLTKRSRQVCADPSEEWVQKYVSDL 65
>1J9O-A nrPDB
Length = 93
Score = 42.4 bits (98), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 56 EGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSKK 92
EG + A+IF TK+ L VCA+P+ TWV+ +VR + +K
Sbjct: 31 EGS-LRAVIFITKRGLKVCADPQATWVRDVVRSMDRK 66
>1ESR-A nrPDB
Length = 76
Score = 42.0 bits (97), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSK 91
CC +R + + + +TR + N C A+IF T++ VCA+PK+ WV+ ++ L +
Sbjct: 11 CCFNVINRKIPIQRLESYTR-ITNIQCPKEAVIFKTQRGKEVCADPKERWVRDSMKHLDQ 69
Query: 92 KVKNM 96
+N+
Sbjct: 70 IFQNL 74
>1DOL-A nrPDB
Length = 77
Score = 40.8 bits (94), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSK 91
CC +T+R + + + + R++ + C A+IF T +CA+PKQ WV+ + L K
Sbjct: 12 CCYNFTNRKISVQRLASY-RRITSSKCPKEAVIFKTIVAKEICADPKQKWVQDSMDHLDK 70
Query: 92 KVK 94
+ +
Sbjct: 71 QTQ 73
>1NCV-A nrPDB
Length = 76
Score = 40.0 bits (92), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSK 91
CC + ++ + PK + R+ + C A+IF TK +CA+P Q WV+ ++ L K
Sbjct: 11 CCYRFINKKI-PKQRLESYRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDK 69
Query: 92 KVK 94
K +
Sbjct: 70 KTQ 72
>4MHE-A nrPDB
Length = 70
Score = 39.7 bits (91), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWV-KYIVRL 88
CCL YT + KFIV ++ + C +I TK+ +CA+P + WV KYI L
Sbjct: 11 CCLVYTSWQIPQKFIVDYSE--TSPQCPKPGVILLTKRGRQICADPNKKWVQKYISDL 66
>1G91-A nrPDB
Length = 77
Score = 39.7 bits (91), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 27 ASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIV 86
A++ DCC+ YT R + + + N C +IF TKK CANP V+ +
Sbjct: 6 ATSADCCISYTPRSIPCSLLESYFE--TNSECSKPGVIFLTKKGRRFCANPSDKQVQVCM 63
Query: 87 RLL 89
R+L
Sbjct: 64 RML 66
>1G2S-A nrPDB
Length = 71
Score = 39.7 bits (91), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLL 89
CC Y+ + L ++ + + + C A+IF TK+ VC +P++ WV+ + LL
Sbjct: 10 CCFQYSHKPLPWTWVRSY--EFTSNSCSQRAVIFTTKRGKKVCTHPRKKWVQKYISLL 65
>4ZLT-F nrPDB
Length = 70
Score = 38.1 bits (87), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVK-YIVRL 88
CC Y+ +I +FIV + + C +IF TK+ +CA+ K+TWV+ YI L
Sbjct: 12 CCFSYSRKIPR-QFIVAYFE--TSSLCSQPGVIFLTKRNRQICADSKETWVQEYITDL 66
>1EOT-A nrPDB
Length = 74
Score = 37.4 bits (85), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSK 91
CC +R + + + + R++ + C A+IF TK +CA+PK+ WV+ ++ L +
Sbjct: 9 CCFNLANRKIPLQRLESY-RRITSGKCPQKAVIFKTKLAKDICADPKKKWVQDSMKYLDQ 67
Query: 92 K 92
K
Sbjct: 68 K 68
>2VXW-A nrPDB
Length = 69
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLL 89
CC Y R L I + + C A++F T+K VCANP++ WV+ + L
Sbjct: 11 CCFAYIARPLPRAHIKEYF--YTSGKCSNPAVVFVTRKNRQVCANPEKKWVREYINSL 66
>5UIW-B nrPDB
Length = 75
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 31 DCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLS 90
CC Y R L I + + C A++F T+K VCANP++ WV+ + L
Sbjct: 10 SCCFAYIARPLPRAHIKEYF--YTSGKCSNPAVVFVTRKNRQVCANPEKKWVREYINSLE 67
>2Q8T-A nrPDB
Length = 74
Score = 36.2 bits (82), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 31 DCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLL 89
+CC YT + + I+ + N C I+F TK+ SVC NP WV+ ++ +
Sbjct: 15 ECCFTYTTYKIPRQRIMDYYE--TNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDM 71
>1HHV-A nrPDB
Length = 74
Score = 36.2 bits (82), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 32 CCLGYTDRILHPKFIVGF--TRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLL 89
CCLGY R L + + T QL C +IF TK+ VCA+ + WVK +++ L
Sbjct: 14 CCLGYQKRPLPQVLLSSWYPTSQL----CSKPGVIFLTKRGRQVCADKSKDWVKKLMQQL 69
Query: 90 S 90
Sbjct: 70 P 70
>1EQT-A nrPDB
Length = 68
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLL 89
CC Y R + I + + C A++F T+K VCANP++ WV+ + L
Sbjct: 10 CCFAYIARPMPRAHIKEYF--YTSGKCSNPAVVFVTRKNRQVCANPEKKWVREYINSL 65
>2Q8R-E nrPDB
Length = 66
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 31 DCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLS 90
+CC YT + + I+ + N C I+F TK+ SVC NP WV+ ++ +
Sbjct: 7 ECCFTYTTYKIPRQRIMDYYE--TNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMK 64
Query: 91 K 91
+
Sbjct: 65 E 65
>4RWS-C nrPDB
Length = 80
Score = 35.8 bits (81), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLS 90
CCLGY R L P+ ++ + ++ C +IF TK+ VCA+ + WVK +++ L
Sbjct: 11 CCLGYQKRPL-PQVLLS-SWYPTSQLCSKPGVIFLTKRGRQVCADKSKDWVKKLMQQLP 67
>2RA4-A nrPDB
Length = 76
Score = 35.8 bits (81), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSK 91
CC ++ + + + + + + C A+IF TK +CA+PK+ WV+ ++ L +
Sbjct: 12 CCFTFSSKKISLQRLKSYV--ITTSRCPQKAVIFRTKLGKEICADPKEKWVQNYMKHLGR 69
Query: 92 KVKNM 96
K +
Sbjct: 70 KAHTL 74
>1EIG-A nrPDB
Length = 73
Score = 35.4 bits (80), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEG-CDINAIIFHTKKKLSVCANPKQTWVKYIVRLLS 90
CC+ + + + +V + QL++ C +IF TKK C +PKQ WV+ ++ L
Sbjct: 7 CCMFFVSKRIPENRVVSY--QLSSRSTCLKAGVIFTTKKGQQSCGDPKQEWVQRYMKNLD 64
Query: 91 KKVK 94
K K
Sbjct: 65 AKQK 68
>4XDX-A nrPDB
Length = 70
Score = 34.3 bits (77), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 33 CLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSKK 92
C+ + HPKFI + C II +C +PK+ WV+ +V K+
Sbjct: 7 CIKTYSKPFHPKFIKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKR 66
Query: 93 VKN 95
+N
Sbjct: 67 AEN 69
>5YAM-A nrPDB
Length = 69
Score = 32.7 bits (73), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLL 89
CC Y L + + + C A++F T++ VCANP++ WV+ + L
Sbjct: 11 CCFAYLSLALPRAHVKEYF--YTSSKCSNLAVVFVTRRNRQVCANPEKKWVQEYINYL 66
>5WB2-B nrPDB
Length = 76
Score = 32.3 bits (72), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 52 QLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSKKV 93
Q C AII T++ CA+PK+ WVK ++ L ++
Sbjct: 28 QQNQASCGKRAIILETRQHRLFCADPKEQWVKDAMQHLDRQA 69
>4XT3-B nrPDB
Length = 91
Score = 32.3 bits (72), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 52 QLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSKKV 93
Q C AII T++ CA+PK+ WVK ++ L ++
Sbjct: 28 QQNQASCGKRAIILETRQHRLFCADPKEQWVKDAMQHLDRQA 69
>1ZXT-A nrPDB
Length = 76
Score = 31.6 bits (70), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 31 DCCLGYTDRILHPKFIVGFTRQLA-NEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLL 89
CC G+ HP + + C +I TK+ +CA+P + WV+ +++ L
Sbjct: 10 SCCYGFQQ---HPPPVQILKEWYPTSPACPKPGVILLTKRGRQICADPSKNWVRQLMQRL 66
Query: 90 S 90
Sbjct: 67 P 67
>5L7M-A nrPDB
Length = 88
Score = 31.2 bits (69), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 28 SNFDC-CLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIV 86
+N C C G ++ I GC ++ TK K +C NP+ W++ ++
Sbjct: 7 TNLKCRCSGVISTVVGLNIIDRIQVTPPGNGCPKTEVVIWTKMKKVICVNPRAKWLQRLL 66
Query: 87 RLLSKK 92
R + K
Sbjct: 67 RHVQSK 72
>5CBA-E nrPDB
Length = 88
Score = 29.6 bits (65), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 57 GCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSKK 92
GC II K K VC +P+ W++ ++ +L K+
Sbjct: 38 GCPRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKR 73
>1QH8-B nrPDB
Length = 519
Score = 27.7 bits (60), Expect = 1.1, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
Query: 43 PKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLL 89
P F++G TR L GC+ I+ H N + W K + ++L
Sbjct: 369 PDFVMGLTRFLLELGCEPTVILSH---------NANKRWQKAMNKML 406
>1NR4-A nrPDB
Length = 71
Score = 27.7 bits (60), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 31 DCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLL 89
+CCL Y + + + + + +E C +AI+F T + ++C++P VK V+ L
Sbjct: 9 ECCLEYFKGAIPLRKLKTWYQ--TSEDCSRDAIVFVTVQGRAICSDPNNKRVKNAVKYL 65
>6CWS-A nrPDB
Length = 108
Score = 27.7 bits (60), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 52 QLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSKK 92
Q A+ CD+ A+I H K++ +C +P VK +++ + K
Sbjct: 33 QRADGDCDLAAVILHVKRR-RICVSPHNHTVKQWMKVQAAK 72
>2HCC-A nrPDB
Length = 66
Score = 27.3 bits (59), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 31 DCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLL 89
DCC Y + + P ++ + ++E C +IF TKK VCA P V+ ++ L
Sbjct: 5 DCCTSYISQSI-PCSLMKSYFETSSE-CSKPGVIFLTKKGRQVCAKPSGPGVQDCMKKL 61
>5WP4-A nrPDB
Length = 491
Score = 25.4 bits (54), Expect = 6.1, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 44 KFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYI 85
KFI F+++ D + I+ K KL CA+ +Q W +I
Sbjct: 452 KFISDFSKE------DYDDIVGGWKSKLERCASDEQKWGLFI 487
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
2JYO-A nrPDB 100 2e-22
1HA6-A nrPDB 94 2e-20
1ESR-A nrPDB 91 8e-20
2MP1-A nrPDB 89 3e-19
1NCV-A nrPDB 89 6e-19
5EKI-A nrPDB 84 1e-17
4ZKB-B nrPDB 84 1e-17
1DOL-A nrPDB 84 1e-17
2X6L-A nrPDB 84 1e-17
1EOT-A nrPDB 82 4e-17
2L4N-A nrPDB 82 5e-17
4MHE-A nrPDB 81 1e-16
5UIW-B nrPDB 81 1e-16
4ZLT-F nrPDB 80 2e-16
1G91-A nrPDB 80 2e-16
2VXW-A nrPDB 80 2e-16
1G2S-A nrPDB 79 5e-16
5LTL-A nrPDB 77 2e-15
1J9O-A nrPDB 65 7e-12
Sequences not found previously or not previously below threshold:
1EQT-A nrPDB 80 2e-16
2Q8R-E nrPDB 79 3e-16
2Q8T-A nrPDB 79 4e-16
2RA4-A nrPDB 76 4e-15
5YAM-A nrPDB 72 4e-14
1ZXT-A nrPDB 71 9e-14
1HHV-A nrPDB 69 3e-13
2HCC-A nrPDB 69 6e-13
4RWS-C nrPDB 68 7e-13
1EIG-A nrPDB 66 4e-12
4XT3-B nrPDB 55 7e-09
5WB2-B nrPDB 54 1e-08
1NR4-A nrPDB 54 2e-08
4OIK-A nrPDB 49 4e-07
4XDX-A nrPDB 49 6e-07
5L7M-A nrPDB 43 4e-05
5CBA-E nrPDB 41 1e-04
1ROD-A nrPDB 38 0.001
2MGS-A nrPDB 33 0.037
6EHZ-A nrPDB 32 0.043
1MI2-A nrPDB 32 0.069
1MSH-A nrPDB 31 0.10
4LMQ-D nrPDB 31 0.12
1F9P-A nrPDB 31 0.13
1PLF-A nrPDB 30 0.16
4HCS-A nrPDB 30 0.20
6CWS-A nrPDB 30 0.24
1NAP-A nrPDB 30 0.24
2KUM-A nrPDB 29 0.44
2K04-A nrPDB 29 0.45
2N55-A nrPDB 29 0.54
1LV9-A nrPDB 29 0.61
1RJT-A nrPDB 29 0.72
5OB5-A nrPDB 28 1.3
5DWV-A nrPDB 27 1.9
1ZS9-A nrPDB 27 2.4
1PFN-A nrPDB 26 3.2
6G72-r nrPDB 26 4.1
5XTH-I nrPDB 26 4.8
2IA0-A nrPDB 25 8.8
5GUP-M nrPDB 25 8.8
>2JYO-A nrPDB
Length = 70
Score = 100 bits (248), Expect = 2e-22, Method: Composition-based stats.
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 27 ASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIV 86
ASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIV
Sbjct: 1 ASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIV 60
Query: 87 RLLSKKVKNM 96
RLLSKKVKNM
Sbjct: 61 RLLSKKVKNM 70
>1HA6-A nrPDB
Length = 70
Score = 93.6 bits (231), Expect = 2e-20, Method: Composition-based stats.
Identities = 47/70 (67%), Positives = 54/70 (77%)
Query: 27 ASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIV 86
ASN+DCCL Y L + IVGFTRQ+A+E CDINAIIFHTKK+ SVCA+PKQ WVK V
Sbjct: 1 ASNYDCCLSYIQTPLPSRAIVGFTRQMADEACDINAIIFHTKKRKSVCADPKQNWVKRAV 60
Query: 87 RLLSKKVKNM 96
LLS +VK M
Sbjct: 61 NLLSLRVKKM 70
>1ESR-A nrPDB
Length = 76
Score = 91.3 bits (225), Expect = 8e-20, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSK 91
CC +R + + + +TR + N C A+IF T++ VCA+PK+ WV+ ++ L +
Sbjct: 11 CCFNVINRKIPIQRLESYTR-ITNIQCPKEAVIFKTQRGKEVCADPKERWVRDSMKHLDQ 69
Query: 92 KVKNM 96
+N+
Sbjct: 70 IFQNL 74
>2MP1-A nrPDB
Length = 77
Score = 89.4 bits (220), Expect = 3e-19, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 31 DCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLS 90
DCCL T + + + F L +GC + A++F T + +CA P Q WV+ I++ L
Sbjct: 7 DCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQ 66
Query: 91 KKVKNM 96
+ M
Sbjct: 67 RTSAKM 72
>1NCV-A nrPDB
Length = 76
Score = 88.6 bits (218), Expect = 6e-19, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 28 SNFDCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVR 87
++ CC + ++ + + + + R+ + C A+IF TK +CA+P Q WV+ ++
Sbjct: 7 TSTTCCYRFINKKIPKQRLESY-RRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMK 65
Query: 88 LLSKKVK 94
L KK +
Sbjct: 66 HLDKKTQ 72
>5EKI-A nrPDB
Length = 79
Score = 84.4 bits (207), Expect = 1e-17, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 31 DCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKK--LSVCANPKQTWVKYIVRL 88
DCCL Y+ R + K + + +Q + GC I AI+F +K+ +CA+PK+ WV+ +++
Sbjct: 7 DCCLKYSQRKIPAKVVRSYRKQEPSLGCSIPAILFLPRKRSQAELCADPKELWVQQLMQH 66
Query: 89 LSKK 92
L K
Sbjct: 67 LDKT 70
>4ZKB-B nrPDB
Length = 75
Score = 84.4 bits (207), Expect = 1e-17, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 26 AASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYI 85
A + CC YT R + FI + + C +IF TK+ VCA+P + WV+
Sbjct: 4 ADTPTACCFSYTSRQIPQNFIADYFE--TSSQCSKPGVIFLTKRSRQVCADPSEEWVQKY 61
Query: 86 VRLLS 90
V L
Sbjct: 62 VSDLE 66
>1DOL-A nrPDB
Length = 77
Score = 84.0 bits (206), Expect = 1e-17, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSK 91
CC +T+R + + + + R++ + C A+IF T +CA+PKQ WV+ + L K
Sbjct: 12 CCYNFTNRKISVQRLASY-RRITSSKCPKEAVIFKTIVAKEICADPKQKWVQDSMDHLDK 70
Query: 92 KVK 94
+ +
Sbjct: 71 QTQ 73
>2X6L-A nrPDB
Length = 69
Score = 84.0 bits (206), Expect = 1e-17, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLS 90
CC YT R L F+V + + C A++F TK+ VCA+P ++WV+ V L
Sbjct: 11 CCFSYTARKLPRNFVVDYYE--TSSLCSQPAVVFQTKRSKQVCADPSESWVQEYVYDLE 67
>1EOT-A nrPDB
Length = 74
Score = 82.4 bits (202), Expect = 4e-17, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 26 AASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYI 85
A+ CC +R + + + + R++ + C A+IF TK +CA+PK+ WV+
Sbjct: 3 ASVPTTCCFNLANRKIPLQRLESY-RRITSGKCPQKAVIFKTKLAKDICADPKKKWVQDS 61
Query: 86 VRLLSKKV 93
++ L +K
Sbjct: 62 MKYLDQKS 69
>2L4N-A nrPDB
Length = 113
Score = 82.0 bits (201), Expect = 5e-17, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 31 DCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKK--LSVCANPKQTWVKYIVRL 88
DCCL Y+ R + K + + +Q + GC I AI+F +K+ +CA+PK+ WV+ +++
Sbjct: 7 DCCLKYSQRKIPAKVVRSYRKQEPSLGCSIPAILFLPRKRSQAELCADPKELWVQQLMQH 66
Query: 89 LSKK 92
L K
Sbjct: 67 LDKT 70
>4MHE-A nrPDB
Length = 70
Score = 81.3 bits (199), Expect = 1e-16, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLL 89
CCL YT + KFIV ++ + C +I TK+ +CA+P + WV+ + L
Sbjct: 11 CCLVYTSWQIPQKFIVDYSE--TSPQCPKPGVILLTKRGRQICADPNKKWVQKYISDL 66
>5UIW-B nrPDB
Length = 75
Score = 80.9 bits (198), Expect = 1e-16, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLS 90
CC Y R L I + + C A++F T+K VCANP++ WV+ + L
Sbjct: 11 CCFAYIARPLPRAHIKEYFY--TSGKCSNPAVVFVTRKNRQVCANPEKKWVREYINSLE 67
>4ZLT-F nrPDB
Length = 70
Score = 80.1 bits (196), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 26 AASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYI 85
A + CC Y+ R + +FIV + + C +IF TK+ +CA+ K+TWV+
Sbjct: 6 ADTPTACCFSYS-RKIPRQFIVAYFE--TSSLCSQPGVIFLTKRNRQICADSKETWVQEY 62
Query: 86 VRLLS 90
+ L
Sbjct: 63 ITDLE 67
>1EQT-A nrPDB
Length = 68
Score = 80.1 bits (196), Expect = 2e-16, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLS 90
CC Y R + I + + C A++F T+K VCANP++ WV+ + L
Sbjct: 10 CCFAYIARPMPRAHIKEYFY--TSGKCSNPAVVFVTRKNRQVCANPEKKWVREYINSLE 66
>1G91-A nrPDB
Length = 77
Score = 80.1 bits (196), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 27 ASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIV 86
A++ DCC+ YT R + + + N C +IF TKK CANP V+ +
Sbjct: 6 ATSADCCISYTPRSIPCSLLESYFE--TNSECSKPGVIFLTKKGRRFCANPSDKQVQVCM 63
Query: 87 RLLSKKVK 94
R+L +
Sbjct: 64 RMLKLDTR 71
>2VXW-A nrPDB
Length = 69
Score = 79.7 bits (195), Expect = 2e-16, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 26 AASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYI 85
++ + CC Y R L I + + C A++F T+K VCANP++ WV+
Sbjct: 5 SSQSSACCFAYIARPLPRAHIKEYFY--TSGKCSNPAVVFVTRKNRQVCANPEKKWVREY 62
Query: 86 VRLLS 90
+ L
Sbjct: 63 INSLE 67
>2Q8R-E nrPDB
Length = 66
Score = 79.4 bits (194), Expect = 3e-16, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 31 DCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLL 89
+CC YT + + I+ + N C I+F TK+ SVC NP WV+ ++ +
Sbjct: 7 ECCFTYTTYKIPRQRIMDYYE--TNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDM 63
>2Q8T-A nrPDB
Length = 74
Score = 79.0 bits (193), Expect = 4e-16, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 31 DCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLL 89
+CC YT + + I+ + N C I+F TK+ SVC NP WV+ ++ +
Sbjct: 15 ECCFTYTTYKIPRQRIMDYYE--TNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDM 71
>1G2S-A nrPDB
Length = 71
Score = 78.6 bits (192), Expect = 5e-16, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLL 89
CC Y+ + L ++ + + + C A+IF TK+ VC +P++ WV+ + LL
Sbjct: 10 CCFQYSHKPLPWTWVRSY--EFTSNSCSQRAVIFTTKRGKKVCTHPRKKWVQKYISLL 65
>5LTL-A nrPDB
Length = 100
Score = 77.0 bits (188), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVR 87
CCL Y +++L + +VG+ + L C + AIIF TK+ VC NP WV+ ++
Sbjct: 17 CCLKYYEKVLPRRLVVGYRKAL---NCHLPAIIFVTKRNREVCTNPNDDWVQEYIK 69
>2RA4-A nrPDB
Length = 76
Score = 75.9 bits (185), Expect = 4e-15, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSK 91
CC ++ + + + + + + C A+IF TK +CA+PK+ WV+ ++ L +
Sbjct: 12 CCFTFSSKKISLQRLKSY--VITTSRCPQKAVIFRTKLGKEICADPKEKWVQNYMKHLGR 69
Query: 92 KVKNM 96
K +
Sbjct: 70 KAHTL 74
>5YAM-A nrPDB
Length = 69
Score = 72.4 bits (176), Expect = 4e-14, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLS 90
CC Y L + + + C A++F T++ VCANP++ WV+ + L
Sbjct: 11 CCFAYLSLALPRAHVKEYFY--TSSKCSNLAVVFVTRRNRQVCANPEKKWVQEYINYLE 67
>1ZXT-A nrPDB
Length = 76
Score = 71.3 bits (173), Expect = 9e-14, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLL 89
CC G+ + + + + C +I TK+ +CA+P + WV+ +++ L
Sbjct: 11 CCYGFQQHPPPVQILKEWY--PTSPACPKPGVILLTKRGRQICADPSKNWVRQLMQRL 66
>1HHV-A nrPDB
Length = 74
Score = 69.3 bits (168), Expect = 3e-13, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLL 89
CCLGY R L + + ++ C +IF TK+ VCA+ + WVK +++ L
Sbjct: 14 CCLGYQKRPLPQVLLSSWY--PTSQLCSKPGVIFLTKRGRQVCADKSKDWVKKLMQQL 69
>2HCC-A nrPDB
Length = 66
Score = 68.6 bits (166), Expect = 6e-13, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 30 FDCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLL 89
DCC Y + + + + + C +IF TKK VCA P V+ ++ L
Sbjct: 4 ADCCTSYISQSIPCSLMKSYFE--TSSECSKPGVIFLTKKGRQVCAKPSGPGVQDCMKKL 61
>4RWS-C nrPDB
Length = 80
Score = 68.2 bits (165), Expect = 7e-13, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLL 89
CCLGY R L + + ++ C +IF TK+ VCA+ + WVK +++ L
Sbjct: 11 CCLGYQKRPLPQVLLSSWY--PTSQLCSKPGVIFLTKRGRQVCADKSKDWVKKLMQQL 66
>1EIG-A nrPDB
Length = 73
Score = 65.9 bits (159), Expect = 4e-12, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSK 91
CC+ + + + +V + + + C +IF TKK C +PKQ WV+ ++ L
Sbjct: 7 CCMFFVSKRIPENRVVSY-QLSSRSTCLKAGVIFTTKKGQQSCGDPKQEWVQRYMKNLDA 65
Query: 92 KVKN 95
K K
Sbjct: 66 KQKK 69
>1J9O-A nrPDB
Length = 93
Score = 65.1 bits (157), Expect = 7e-12, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 33 CLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSKK 92
C+ T + L I + + A+IF TK+ L VCA+P+ TWV+ +VR + +K
Sbjct: 11 CVSLTTQRLPVSRIKTY----TITEGSLRAVIFITKRGLKVCADPQATWVRDVVRSMDRK 66
Query: 93 V 93
Sbjct: 67 S 67
>4XT3-B nrPDB
Length = 91
Score = 55.1 bits (131), Expect = 7e-09, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 33 CLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSKK 92
C T + + ++ + + A+ C AII T++ CA+PK+ WVK ++ L ++
Sbjct: 12 CSKMTSK-IPVALLIHYQQNQAS--CGKRAIILETRQHRLFCADPKEQWVKDAMQHLDRQ 68
Query: 93 VKNM 96
+
Sbjct: 69 AAAL 72
>5WB2-B nrPDB
Length = 76
Score = 54.3 bits (129), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 33 CLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSKK 92
C T + + ++ + + A+ C AII T++ CA+PK+ WVK ++ L ++
Sbjct: 12 CSKMTSK-IPVALLIHYQQNQAS--CGKRAIILETRQHRLFCADPKEQWVKDAMQHLDRQ 68
Query: 93 VKNM 96
+
Sbjct: 69 AAAL 72
>1NR4-A nrPDB
Length = 71
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 31 DCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLS 90
+CCL Y + + + + + +E C +AI+F T + ++C++P VK V+ L
Sbjct: 9 ECCLEYFKGAIPLRKLKTWYQ--TSEDCSRDAIVFVTVQGRAICSDPNNKRVKNAVKYLQ 66
>4OIK-A nrPDB
Length = 74
Score = 49.3 bits (116), Expect = 4e-07, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 32 CCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLL 89
CC + ++ + + I+ + + C +IF K+ CA WV+ ++L
Sbjct: 11 CCFSFAEQEIPLRAILCYRN--TSSICSNEGLIFKLKRGKEACALDTVGWVQRHRKML 66
>4XDX-A nrPDB
Length = 70
Score = 48.5 bits (114), Expect = 6e-07, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 33 CLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSKK 92
C+ + HPKFI + C II +C +PK+ WV+ +V K+
Sbjct: 7 CIKTYSKPFHPKFIKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKR 66
Query: 93 VKN 95
+N
Sbjct: 67 AEN 69
>5L7M-A nrPDB
Length = 88
Score = 42.8 bits (99), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 28 SNFDC-CLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIV 86
+N C C G ++ I GC ++ TK K +C NP+ W++ ++
Sbjct: 7 TNLKCRCSGVISTVVGLNIIDRIQVTPPGNGCPKTEVVIWTKMKKVICVNPRAKWLQRLL 66
Query: 87 RLLSKKV 93
R + K
Sbjct: 67 RHVQSKS 73
>5CBA-E nrPDB
Length = 88
Score = 40.8 bits (94), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 28 SNFDC-CLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIV 86
++ C C+ + + +FI GC II K K VC +P+ W++ ++
Sbjct: 8 TSLRCRCVQESSVFIPRRFIDRIQILPRGNGCPRKEIIVWKKNKSIVCVDPQAEWIQRMM 67
Query: 87 RLLSKKVKN 95
+L K+ +
Sbjct: 68 EVLRKRSSS 76
>1ROD-A nrPDB
Length = 72
Score = 37.8 bits (86), Expect = 0.001, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 21/57 (36%)
Query: 33 CLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLL 89
C+ + HPKFI + C II +C +P VK I+ +
Sbjct: 9 CIKTYSKPFHPKFIKELRVIESGPHCANTEIIVKLSDGRELCLDPASPIVKKIIEKM 65
>2MGS-A nrPDB
Length = 78
Score = 32.7 bits (73), Expect = 0.037, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 33 CLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVR 87
CL T +HPK I C ++ K +C +P+ ++K +++
Sbjct: 15 CLQTTQ-GVHPKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQ 68
>6EHZ-A nrPDB
Length = 98
Score = 32.4 bits (72), Expect = 0.043, Method: Composition-based stats.
Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 29 NFDCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVR 87
++ C + + + + + L C + + VC +PK W++ +
Sbjct: 6 SYRCPCRFFESHIARANVK-HLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLE 63
>1MI2-A nrPDB
Length = 73
Score = 32.0 bits (71), Expect = 0.069, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 27 ASNFDC-CLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYI 85
AS C CL R + K I + C +I K VC +P+ V+ I
Sbjct: 4 ASELRCQCLKTLPR-VDFKNIQSLSVTPPGPHCAQTEVIATLKGGQKVCLDPEAPLVQKI 62
Query: 86 VRLLSKKVK 94
++ + K K
Sbjct: 63 IQKILNKGK 71
>1MSH-A nrPDB
Length = 72
Score = 31.2 bits (69), Expect = 0.10, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 24 SEAASNFDC-CLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWV 82
+ A+ C CL T + +HPK I + C +I K C NP V
Sbjct: 1 ASVATELRCQCLQ-TLQGIHPKNIQSVNVKSPGPHCAQTEVIATLKNGRKACLNPASPIV 59
Query: 83 KYIVRLL 89
K I+ +
Sbjct: 60 KKIIEKM 66
>4LMQ-D nrPDB
Length = 61
Score = 30.8 bits (68), Expect = 0.12, Method: Composition-based stats.
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 47 VGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVR 87
V + L C + + VC +PK W++ +
Sbjct: 16 VKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLE 56
>1F9P-A nrPDB
Length = 85
Score = 30.8 bits (68), Expect = 0.13, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 25/65 (38%)
Query: 23 ESEAASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWV 82
+S+ + C T +HPK I C+ +I K +C +P +
Sbjct: 11 DSDLYAELRCMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRI 70
Query: 83 KYIVR 87
K IV+
Sbjct: 71 KKIVQ 75
>1PLF-A nrPDB
Length = 72
Score = 30.4 bits (67), Expect = 0.16, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 23 ESEAASNFD--C-CLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQ 79
+SE + D C CL T ++P+ I A C +I K +C + +
Sbjct: 1 DSEGGEDEDLQCVCLKTTS-GINPRHISSLEVIGAGLHCPSPQLIATLKTGRKICLDQQN 59
Query: 80 TWVKYIVRLLSK 91
K I++ L K
Sbjct: 60 PLYKKIIKRLLK 71
>4HCS-A nrPDB
Length = 81
Score = 30.4 bits (67), Expect = 0.20, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 33 CLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSKK 92
C I C + ++F C +P +W+ + L +K
Sbjct: 15 CFKVLTTKEPKANIKRCYNLPKTNNC-LKCVLFVDASNRMKCIDPNASWLAERLYRLKEK 73
>6CWS-A nrPDB
Length = 108
Score = 30.0 bits (66), Expect = 0.24, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 32 CCLGYTDRILHP--KFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVR 87
CC + I + + Q A+ CD+ A+I H K++ +C +P VK ++
Sbjct: 11 CCTEVSHHISRRLLERVNMCRIQRADGDCDLAAVILHVKRRR-ICVSPHNHTVKQWMK 67
>1NAP-A nrPDB
Length = 70
Score = 30.0 bits (66), Expect = 0.24, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 33 CLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVR 87
C+ T +HPK I C+ +I K +C +P +K IV+
Sbjct: 7 CIKTTS-GIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQ 60
>2KUM-A nrPDB
Length = 88
Score = 29.3 bits (64), Expect = 0.44, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 32 CCLGYTDRILHPKFIVGFTR---QLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRL 88
CC + L K + + Q A+ C + A + H + S+C +P+ +
Sbjct: 9 CCTQLYRKPLSDKLLRKVIQVELQEADGDCHLQAFVLH-LAQRSICIHPQNPSLSQWFEH 67
Query: 89 LSKK 92
+K
Sbjct: 68 QERK 71
>2K04-A nrPDB
Length = 70
Score = 28.9 bits (63), Expect = 0.45, Method: Composition-based stats.
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 47 VGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVR 87
V + L C + VC +PK W++ +
Sbjct: 25 VKHLKILNTPNCACQIVARLKNNNRQVCIDPKLKWIQEYLE 65
>2N55-A nrPDB
Length = 70
Score = 28.9 bits (63), Expect = 0.54, Method: Composition-based stats.
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 47 VGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVR 87
V + L C + + VC +PK W + +
Sbjct: 25 VKHLKILNTPNCALQIVARLKNNNRQVCIDPKCKWCQEYLE 65
>1LV9-A nrPDB
Length = 77
Score = 28.5 bits (62), Expect = 0.61, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 33 CLGYTDRILHPKFIVGFTRQLANEGCDINAIIFH-TKKKLSVCANPKQTWVKYIVRLLSK 91
C+ +++ ++P+ + A++ C II KK C NP+ +K +++ +SK
Sbjct: 11 CISISNQPVNPRSLEKLEIIPASQFCPRVEIIATMKKKGEKRCLNPESKAIKNLLKAVSK 70
Query: 92 KVKN 95
++
Sbjct: 71 EMSK 74
>1RJT-A nrPDB
Length = 73
Score = 28.5 bits (62), Expect = 0.72, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 33 CLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKL-SVCANPKQTWVKYIVRLLSK 91
C+G + + I + + CD +I K+ C NPK + I++ + +
Sbjct: 11 CIGPGVKAVKVADIEKASIMYPSNNCDKIEVIITLKENKGQRCLNPKSKQARLIIKKVER 70
Query: 92 K 92
K
Sbjct: 71 K 71
>5OB5-A nrPDB
Length = 63
Score = 27.7 bits (60), Expect = 1.3, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 18/51 (35%)
Query: 41 LHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSK 91
+H K I + C +I K C NP VK I+ + K
Sbjct: 13 IHLKNIQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLK 63
>5DWV-A nrPDB
Length = 573
Score = 27.0 bits (58), Expect = 1.9, Method: Composition-based stats.
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 42 HPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQT 80
I L + ++F +KK L N ++
Sbjct: 127 PANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKK 165
>1ZS9-A nrPDB
Length = 261
Score = 26.6 bits (57), Expect = 2.4, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 47 VGFTRQLANEGCDINAIIFHTKKKLSVCA 75
+ + + GC N I+F T A
Sbjct: 191 ESYRKIADSIGCSTNNILFLTDVTREASA 219
>1PFN-A nrPDB
Length = 68
Score = 26.2 bits (56), Expect = 3.2, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 22/64 (34%)
Query: 26 AASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYI 85
+A C T + P+ I A C +I K +C + + K I
Sbjct: 2 SAKELRCQCVKTTSQVRPRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKI 61
Query: 86 VRLL 89
++ L
Sbjct: 62 IKKL 65
>6G72-r nrPDB
Length = 113
Score = 25.8 bits (55), Expect = 4.1, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 24/55 (43%)
Query: 27 ASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTW 81
++N+ C ++ P I+ + L + ++ + T+KK A P + W
Sbjct: 50 SNNYYCTRDGRREVVPPSIIMSSQKALVSGKAAESSAMAATEKKAVTPAPPMKRW 104
>5XTH-I nrPDB
Length = 110
Score = 25.8 bits (55), Expect = 4.8, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 23/55 (41%)
Query: 27 ASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTW 81
++N+ C + P I+ + L + ++ + T+KK A P + W
Sbjct: 47 SNNYYCTRDGRRESVPPSIIMSSQKALVSGKPAESSAVAATEKKAVTPAPPIKRW 101
>2IA0-A nrPDB
Length = 171
Score = 24.7 bits (52), Expect = 8.8, Method: Composition-based stats.
Identities = 3/34 (8%), Positives = 13/34 (38%)
Query: 39 RILHPKFIVGFTRQLANEGCDINAIIFHTKKKLS 72
+ + F+ + +++ + ++F K
Sbjct: 86 KPVIEDFLERYISYISSTLSALPGVLFVAKSGED 119
>5GUP-M nrPDB
Length = 113
Score = 24.7 bits (52), Expect = 8.8, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 24/55 (43%)
Query: 27 ASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTW 81
++N+ C + P ++ + LA+ ++ + T+KK A P + W
Sbjct: 50 SNNYYCTRDGRREAMPPSIVMSSQKVLASGKPAESSAVAETEKKAVTPAPPIKRW 104
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.315 0.132 0.422
Lambda K H
0.267 0.0406 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,389,690
Number of Sequences: 36641
Number of extensions: 106511
Number of successful extensions: 412
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 101
length of query: 96
length of database: 10,336,785
effective HSP length: 64
effective length of query: 32
effective length of database: 7,991,761
effective search space: 255736352
effective search space used: 255736352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 52 (24.7 bits)