BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P78356
(416 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
3X07-A nrPDB 803 0.0
2YBX-A nrPDB 571 e-163
2GK9-A nrPDB 511 e-145
6CMW-A nrPDB 165 3e-41
1OHW-A nrPDB 33 0.33
2NBR-A nrPDB 31 1.1
2L3W-A nrPDB 31 1.1
3R31-A nrPDB 30 1.4
2JJ9-A nrPDB 29 3.4
4IL2-A nrPDB 29 4.1
6CDD-A nrPDB 28 7.2
6CHS-A nrPDB 28 8.0
>3X07-A nrPDB
Length = 393
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/386 (99%), Positives = 385/386 (99%)
Query: 31 QKVKLFRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLP 90
QKVKLFRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLP
Sbjct: 8 QKVKLFRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLP 67
Query: 91 SRFKFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIK 150
SRFKFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIK
Sbjct: 68 SRFKFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIK 127
Query: 151 TVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVVTRNVFSHRLT 210
TVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVVTR VFSHRLT
Sbjct: 128 TVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVVTRAVFSHRLT 187
Query: 211 VHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEF 270
VHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEF
Sbjct: 188 VHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEF 247
Query: 271 LAQLKIMDYSLLVGIHDVDRAEQEEMEVEERAEDEECENDGVGGNLLCSYGTPPDSPGNL 330
LAQLKIMDYSLLVGIHDVDRAEQEEMEVEERAEDEECENDGVGGNLLCSYGTPPDSPGNL
Sbjct: 248 LAQLKIMDYSLLVGIHDVDRAEQEEMEVEERAEDEECENDGVGGNLLCSYGTPPDSPGNL 307
Query: 331 LSFPRFFGPGEFDPSVDVYAMKSHESSPKKEVYFMAIIDILTPYDTKKKAAHAAKTVKHG 390
LSFPRFFGPGEFDPSVDVYAMKSHESSPKKEVYFMAIIDILTPYDTKKKAAHAAKTVKHG
Sbjct: 308 LSFPRFFGPGEFDPSVDVYAMKSHESSPKKEVYFMAIIDILTPYDTKKKAAHAAKTVKHG 367
Query: 391 AGAEISTVNPEQYSKRFNEFMSNILT 416
AGAEISTVNPEQYSKRFNEFMSNILT
Sbjct: 368 AGAEISTVNPEQYSKRFNEFMSNILT 393
>2YBX-A nrPDB
Length = 394
Score = 571 bits (1471), Expect = e-163, Method: Compositional matrix adjust.
Identities = 293/380 (77%), Positives = 338/380 (88%), Gaps = 5/380 (1%)
Query: 36 FRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLPSRFKF 95
F++ +P+LSVLMWGVNH+INELS+V +PVMLMPDDFKAYSKIKVDNHLFNKEN+PS FKF
Sbjct: 20 FQSMDPLLSVLMWGVNHSINELSHVQIPVMLMPDDFKAYSKIKVDNHLFNKENMPSHFKF 79
Query: 96 KEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIKTVSSE 155
KEYCPMVFRNLRERFGIDDQD+QNS+TRSAP+ +DSQ R G RF T+YD+R++IKT++SE
Sbjct: 80 KEYCPMVFRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYIIKTITSE 139
Query: 156 DVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVVTRNVFSHRLTVHRKY 215
DVAEMHNILKKYHQ+IVECHG TLLPQFLGMYRL VDGVE Y++VTRNVFSHRL+V+RKY
Sbjct: 140 DVAEMHNILKKYHQYIVECHGITLLPQFLGMYRLNVDGVEIYVIVTRNVFSHRLSVYRKY 199
Query: 216 DLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQLK 275
DLKGSTVAREASDKEKAK+LPT KDNDF+NEGQK+++ + +KK FLEKLK+DVEFLAQLK
Sbjct: 200 DLKGSTVAREASDKEKAKELPTLKDNDFINEGQKIYIDDNNKKVFLEKLKKDVEFLAQLK 259
Query: 276 IMDYSLLVGIHDVDRAEQEEMEVEERAEDEECENDGVGGNLLCSYGTPPDSPGNLLSFPR 335
+MDYSLLVGIHDV+RAEQEE+E EE +EE E+DG GTPPDSPGN L+
Sbjct: 260 LMDYSLLVGIHDVERAEQEEVECEENDGEEEGESDGTH-----PVGTPPDSPGNTLNSSP 314
Query: 336 FFGPGEFDPSVDVYAMKSHESSPKKEVYFMAIIDILTPYDTKKKAAHAAKTVKHGAGAEI 395
PGEFDP++DVY +K HE+SP+KEVYFMAIIDILT YD KKKAAHAAKTVKHGAGAEI
Sbjct: 315 PLAPGEFDPNIDVYGIKCHENSPRKEVYFMAIIDILTHYDAKKKAAHAAKTVKHGAGAEI 374
Query: 396 STVNPEQYSKRFNEFMSNIL 415
STVNPEQYSKRF +F+ +IL
Sbjct: 375 STVNPEQYSKRFLDFIGHIL 394
>2GK9-A nrPDB
Length = 392
Score = 511 bits (1315), Expect = e-145, Method: Compositional matrix adjust.
Identities = 261/393 (66%), Positives = 318/393 (80%), Gaps = 6/393 (1%)
Query: 27 HFVCQKVKLFRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNK 86
HFV QKVK+FRA++P++ V +WGV H+INELS VP PVML+PDDFKA SKIKV+NHLF++
Sbjct: 3 HFVQQKVKVFRAADPLVGVFLWGVAHSINELSQVPPPVMLLPDDFKASSKIKVNNHLFHR 62
Query: 87 ENLPSRFKFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRR 146
ENLPS FKFKEYCP VFRNLR+RFGIDDQDY S+TR+ P S+S+G G RFL +YDR
Sbjct: 63 ENLPSHFKFKEYCPQVFRNLRDRFGIDDQDYLVSLTRNPP--SESEGSDG-RFLISYDRT 119
Query: 147 FVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVVTRNVFS 206
VIK VSSED+A+MH+ L YHQ+IV+CHGNTLLPQFLGMYR++VD ++YM+V RN+FS
Sbjct: 120 LVIKEVSSEDIADMHSNLSNYHQYIVKCHGNTLLPQFLGMYRVSVDNEDSYMLVMRNMFS 179
Query: 207 HRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKR 266
HRL VHRKYDLKGS V+REASDKEK K+LPT +D DFLN+ QK+++GEE KK FLEKLKR
Sbjct: 180 HRLPVHRKYDLKGSLVSREASDKEKVKELPTLRDMDFLNKNQKVYIGEEEKKIFLEKLKR 239
Query: 267 DVEFLAQLKIMDYSLLVGIHDVDRAEQEEMEVEERAEDEECEND-GVGG--NLLCSYGTP 323
DVEFL QLKIMDYSLL+GIHD+ R + E E R ++ E + D + G L+ SYGT
Sbjct: 240 DVEFLVQLKIMDYSLLLGIHDIIRGSEPEEEAPVREDESEVDGDCSLTGPPALVGSYGTS 299
Query: 324 PDSPGNLLSFPRFFGPGEFDPSVDVYAMKSHESSPKKEVYFMAIIDILTPYDTKKKAAHA 383
P+ G + R GPGEF+ +DVYA++S E +P+KEVYFM +IDILT YD KKKAAHA
Sbjct: 300 PEGIGGYIHSHRPLGPGEFESFIDVYAIRSAEGAPQKEVYFMGLIDILTQYDAKKKAAHA 359
Query: 384 AKTVKHGAGAEISTVNPEQYSKRFNEFMSNILT 416
AKTVKHGAGAEISTV+PEQY+KRF +F++NI
Sbjct: 360 AKTVKHGAGAEISTVHPEQYAKRFLDFITNIFA 392
>6CMW-A nrPDB
Length = 394
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 181/382 (47%), Gaps = 22/382 (5%)
Query: 39 SEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLPSR----FK 94
S + + G+ H++ LS P +LM DF+ I + + P FK
Sbjct: 14 SSALKGAIQLGITHSVGSLSQKPERDVLM-QDFEVVESIFFPSQ--GSSSTPGHHHGDFK 70
Query: 95 FKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIKTVSS 154
FK Y P+ FR RE FGI DY S+ I + G G+ F + D F+IKTV
Sbjct: 71 FKTYAPIAFRYFREMFGIRPDDYLYSLCNEPLIELSNPGASGSLFYVSSDDEFIIKTVQH 130
Query: 155 EDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVVTRNVFSHRLTVHRK 214
++ + +L Y + + + TLLP+F G+Y + DG +VV N+ + +H K
Sbjct: 131 KEAEFLQTLLPGYFMNLNQ-NMRTLLPKFYGLYCVQADGKNIRIVVMNNLLPRAVPMHLK 189
Query: 215 YDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEK-LKRDVEFLAQ 273
+DLKGST R AS KE++K +PT+KD DF+ + + + E L + ++RD L
Sbjct: 190 FDLKGSTYKRRASPKERSKGVPTYKDLDFMQDMPEGILLENDHYTALSRTMQRDCRVLQS 249
Query: 274 LKIMDYSLLVGIHDVDRAEQEEMEVEERAEDEECENDGVGGNLLCSYGTPPDSPGNLLSF 333
KIMDYSLLVGIH + RA +E D + + G L C+ +
Sbjct: 250 FKIMDYSLLVGIHILHRAGEE---ASTAVPDTQKKGQG-QKPLYCTAIESIQGESKSKTS 305
Query: 334 PRFFGPGEFDPSVDVYAMKSHESSPKKEVYFMAIIDILTPYDTKKKAAHAAKTVKHGAGA 393
P+ P + + + S ++ + F+ IIDIL Y KK H+ K + H G
Sbjct: 306 PQ--------PYESMGGIPAFNSKGERLLVFIGIIDILQSYRLVKKLEHSWKALLHD-GD 356
Query: 394 EISTVNPEQYSKRFNEFMSNIL 415
+S P Y+ RF +FM + +
Sbjct: 357 TVSVHRPSFYADRFQKFMCSTV 378
>1OHW-A nrPDB
Length = 472
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 325 DSPGNLLSFPR------FFGPGEFDPSVDVYAMKSHESSPKKEVYFMAIIDILTPYDTKK 378
D P ++++F + FF EF P+ + P K + +I+I+ D
Sbjct: 319 DDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLS 378
Query: 379 KAAHAAKTVKHG 390
AAHA K + G
Sbjct: 379 NAAHAGKVLLTG 390
>2NBR-A nrPDB
Length = 173
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 182 QFLGMYRLTVDGVETYMVVTRNVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDN 241
Q++G+ D + + ++ + V SHRL ++ + D KG + E ++D P+ +D
Sbjct: 67 QWMGL----SDSIRSCCLIPQTV-SHRLRLYEREDHKGLMM-------ELSEDCPSIQDR 114
Query: 242 DFLNEGQKLHVGE 254
L+E + LHV E
Sbjct: 115 FHLSEIRSLHVLE 127
>2L3W-A nrPDB
Length = 143
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 372 TPYDTKKKAAHAAKTVKHGAGAEI-STVNPEQYSKRFNE 409
PYD + AAHAA HG A+I S ++ +Y++ F +
Sbjct: 89 APYDQAEVAAHAATYHSHGYDADINSYIDSAEYTESFGD 127
>3R31-A nrPDB
Length = 517
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 238 FKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQLKIMDYSLLVGIHDVDRAEQEE-M 296
+ + G ++ V +++K FLE LKR E + +DY+ +G V +A+QE+ +
Sbjct: 286 YSSGQVCSNGTRVFVQKKAKARFLENLKRRTEAMILGDPLDYATHLGPL-VSKAQQEKVL 344
Query: 297 EVEERAEDEECENDGVGGNLLCSYGTPPDSPG 328
E+ + E G L+ G P + G
Sbjct: 345 SYIEKGKAE-------GATLITGGGIPNNVAG 369
>2JJ9-A nrPDB
Length = 788
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 16/116 (13%)
Query: 128 NSDSQGRCGTRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVEC--HGNTLLPQFLG 185
N S+ + G F+T + E +A + L+ + V C N LP L
Sbjct: 627 NIASRAKKGANFIT-------VAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLE 679
Query: 186 ----MYRLTVDGVETYMVVTRNVFSHRLTVH---RKYDLKGSTVAREASDKEKAKD 234
+ +L +GV + +TR F +R+ ++Y L V R+A D +KA D
Sbjct: 680 DKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATD 735
>4IL2-A nrPDB
Length = 426
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 84 FNKENLPSRFKFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGR 134
+ +E L S K+ ++ P +F +R +FG D+ + R PI + G+
Sbjct: 199 WPEEQLWSTEKYLDFMPKLFDAVRNKFGFDEHLLHDMHHRLTPIEAARFGK 249
>6CDD-A nrPDB
Length = 474
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 236 PTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQLKIMDYSLLVGIHDVDRAEQEE 295
P F DN F E ++ +VGE + + + K + E A + + D+ LL IH + +EE
Sbjct: 375 PLFTDNIFPIENRE-YVGEAQEVSAVAKALKVHEADAPMNVSDFHLLCFIHQMSVLSKEE 433
>6CHS-A nrPDB
Length = 659
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 236 PTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQLKIMDYSLLVGIHDVDRAEQEE 295
P F DN F E ++ +VGE + + + K + E A + + D+ LL IH + +EE
Sbjct: 503 PLFTDNIFPIENRE-YVGEAQEVSAVAKALKVHEADAPMNVSDFHLLCFIHQMSVLSKEE 561
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
3X07-A nrPDB 657 0.0
2GK9-A nrPDB 577 e-165
2YBX-A nrPDB 563 e-161
6CMW-A nrPDB 491 e-139
Sequences not found previously or not previously below threshold:
1OHW-A nrPDB 34 0.12
4HZI-A nrPDB 32 0.70
2YL9-A nrPDB 30 1.6
1M7B-A nrPDB 29 2.9
1GWN-A nrPDB 29 3.0
2EKC-A nrPDB 29 4.3
6CDD-A nrPDB 29 4.4
6CHS-A nrPDB 29 5.1
3RM5-A nrPDB 29 5.8
3LDA-A nrPDB 28 6.9
1SZP-A nrPDB 28 6.9
CONVERGED!
>3X07-A nrPDB
Length = 393
Score = 657 bits (1696), Expect = 0.0, Method: Composition-based stats.
Identities = 385/386 (99%), Positives = 385/386 (99%)
Query: 31 QKVKLFRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLP 90
QKVKLFRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLP
Sbjct: 8 QKVKLFRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLP 67
Query: 91 SRFKFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIK 150
SRFKFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIK
Sbjct: 68 SRFKFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIK 127
Query: 151 TVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVVTRNVFSHRLT 210
TVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVVTR VFSHRLT
Sbjct: 128 TVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVVTRAVFSHRLT 187
Query: 211 VHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEF 270
VHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEF
Sbjct: 188 VHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEF 247
Query: 271 LAQLKIMDYSLLVGIHDVDRAEQEEMEVEERAEDEECENDGVGGNLLCSYGTPPDSPGNL 330
LAQLKIMDYSLLVGIHDVDRAEQEEMEVEERAEDEECENDGVGGNLLCSYGTPPDSPGNL
Sbjct: 248 LAQLKIMDYSLLVGIHDVDRAEQEEMEVEERAEDEECENDGVGGNLLCSYGTPPDSPGNL 307
Query: 331 LSFPRFFGPGEFDPSVDVYAMKSHESSPKKEVYFMAIIDILTPYDTKKKAAHAAKTVKHG 390
LSFPRFFGPGEFDPSVDVYAMKSHESSPKKEVYFMAIIDILTPYDTKKKAAHAAKTVKHG
Sbjct: 308 LSFPRFFGPGEFDPSVDVYAMKSHESSPKKEVYFMAIIDILTPYDTKKKAAHAAKTVKHG 367
Query: 391 AGAEISTVNPEQYSKRFNEFMSNILT 416
AGAEISTVNPEQYSKRFNEFMSNILT
Sbjct: 368 AGAEISTVNPEQYSKRFNEFMSNILT 393
>2GK9-A nrPDB
Length = 392
Score = 577 bits (1488), Expect = e-165, Method: Composition-based stats.
Identities = 261/393 (66%), Positives = 318/393 (80%), Gaps = 6/393 (1%)
Query: 27 HFVCQKVKLFRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNK 86
HFV QKVK+FRA++P++ V +WGV H+INELS VP PVML+PDDFKA SKIKV+NHLF++
Sbjct: 3 HFVQQKVKVFRAADPLVGVFLWGVAHSINELSQVPPPVMLLPDDFKASSKIKVNNHLFHR 62
Query: 87 ENLPSRFKFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRR 146
ENLPS FKFKEYCP VFRNLR+RFGIDDQDY S+TR+ P S+S+G G RFL +YDR
Sbjct: 63 ENLPSHFKFKEYCPQVFRNLRDRFGIDDQDYLVSLTRNPP--SESEGSDG-RFLISYDRT 119
Query: 147 FVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVVTRNVFS 206
VIK VSSED+A+MH+ L YHQ+IV+CHGNTLLPQFLGMYR++VD ++YM+V RN+FS
Sbjct: 120 LVIKEVSSEDIADMHSNLSNYHQYIVKCHGNTLLPQFLGMYRVSVDNEDSYMLVMRNMFS 179
Query: 207 HRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKR 266
HRL VHRKYDLKGS V+REASDKEK K+LPT +D DFLN+ QK+++GEE KK FLEKLKR
Sbjct: 180 HRLPVHRKYDLKGSLVSREASDKEKVKELPTLRDMDFLNKNQKVYIGEEEKKIFLEKLKR 239
Query: 267 DVEFLAQLKIMDYSLLVGIHDVDRAEQEEMEVEERAEDEECEND-GVGGN--LLCSYGTP 323
DVEFL QLKIMDYSLL+GIHD+ R + E E R ++ E + D + G L+ SYGT
Sbjct: 240 DVEFLVQLKIMDYSLLLGIHDIIRGSEPEEEAPVREDESEVDGDCSLTGPPALVGSYGTS 299
Query: 324 PDSPGNLLSFPRFFGPGEFDPSVDVYAMKSHESSPKKEVYFMAIIDILTPYDTKKKAAHA 383
P+ G + R GPGEF+ +DVYA++S E +P+KEVYFM +IDILT YD KKKAAHA
Sbjct: 300 PEGIGGYIHSHRPLGPGEFESFIDVYAIRSAEGAPQKEVYFMGLIDILTQYDAKKKAAHA 359
Query: 384 AKTVKHGAGAEISTVNPEQYSKRFNEFMSNILT 416
AKTVKHGAGAEISTV+PEQY+KRF +F++NI
Sbjct: 360 AKTVKHGAGAEISTVHPEQYAKRFLDFITNIFA 392
>2YBX-A nrPDB
Length = 394
Score = 563 bits (1451), Expect = e-161, Method: Composition-based stats.
Identities = 293/380 (77%), Positives = 338/380 (88%), Gaps = 5/380 (1%)
Query: 36 FRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLPSRFKF 95
F++ +P+LSVLMWGVNH+INELS+V +PVMLMPDDFKAYSKIKVDNHLFNKEN+PS FKF
Sbjct: 20 FQSMDPLLSVLMWGVNHSINELSHVQIPVMLMPDDFKAYSKIKVDNHLFNKENMPSHFKF 79
Query: 96 KEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIKTVSSE 155
KEYCPMVFRNLRERFGIDDQD+QNS+TRSAP+ +DSQ R G RF T+YD+R++IKT++SE
Sbjct: 80 KEYCPMVFRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYIIKTITSE 139
Query: 156 DVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVVTRNVFSHRLTVHRKY 215
DVAEMHNILKKYHQ+IVECHG TLLPQFLGMYRL VDGVE Y++VTRNVFSHRL+V+RKY
Sbjct: 140 DVAEMHNILKKYHQYIVECHGITLLPQFLGMYRLNVDGVEIYVIVTRNVFSHRLSVYRKY 199
Query: 216 DLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQLK 275
DLKGSTVAREASDKEKAK+LPT KDNDF+NEGQK+++ + +KK FLEKLK+DVEFLAQLK
Sbjct: 200 DLKGSTVAREASDKEKAKELPTLKDNDFINEGQKIYIDDNNKKVFLEKLKKDVEFLAQLK 259
Query: 276 IMDYSLLVGIHDVDRAEQEEMEVEERAEDEECENDGVGGNLLCSYGTPPDSPGNLLSFPR 335
+MDYSLLVGIHDV+RAEQEE+E EE +EE E+DG GTPPDSPGN L+
Sbjct: 260 LMDYSLLVGIHDVERAEQEEVECEENDGEEEGESDGTH-----PVGTPPDSPGNTLNSSP 314
Query: 336 FFGPGEFDPSVDVYAMKSHESSPKKEVYFMAIIDILTPYDTKKKAAHAAKTVKHGAGAEI 395
PGEFDP++DVY +K HE+SP+KEVYFMAIIDILT YD KKKAAHAAKTVKHGAGAEI
Sbjct: 315 PLAPGEFDPNIDVYGIKCHENSPRKEVYFMAIIDILTHYDAKKKAAHAAKTVKHGAGAEI 374
Query: 396 STVNPEQYSKRFNEFMSNIL 415
STVNPEQYSKRF +F+ +IL
Sbjct: 375 STVNPEQYSKRFLDFIGHIL 394
>6CMW-A nrPDB
Length = 394
Score = 491 bits (1264), Expect = e-139, Method: Composition-based stats.
Identities = 119/383 (31%), Positives = 181/383 (47%), Gaps = 22/383 (5%)
Query: 38 ASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLPSR----F 93
S + + G+ H++ LS P +LM DF+ I + + P F
Sbjct: 13 TSSALKGAIQLGITHSVGSLSQKPERDVLM-QDFEVVESIFFPSQ--GSSSTPGHHHGDF 69
Query: 94 KFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIKTVS 153
KFK Y P+ FR RE FGI DY S+ I + G G+ F + D F+IKTV
Sbjct: 70 KFKTYAPIAFRYFREMFGIRPDDYLYSLCNEPLIELSNPGASGSLFYVSSDDEFIIKTVQ 129
Query: 154 SEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVVTRNVFSHRLTVHR 213
++ + +L Y + + + TLLP+F G+Y + DG +VV N+ + +H
Sbjct: 130 HKEAEFLQTLLPGYFMNLNQ-NMRTLLPKFYGLYCVQADGKNIRIVVMNNLLPRAVPMHL 188
Query: 214 KYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEK-LKRDVEFLA 272
K+DLKGST R AS KE++K +PT+KD DF+ + + + E L + ++RD L
Sbjct: 189 KFDLKGSTYKRRASPKERSKGVPTYKDLDFMQDMPEGILLENDHYTALSRTMQRDCRVLQ 248
Query: 273 QLKIMDYSLLVGIHDVDRAEQEEMEVEERAEDEECENDGVGGNLLCSYGTPPDSPGNLLS 332
KIMDYSLLVGIH + RA +E D + + G L C+ +
Sbjct: 249 SFKIMDYSLLVGIHILHRAGEE---ASTAVPDTQKKGQG-QKPLYCTAIESIQGESKSKT 304
Query: 333 FPRFFGPGEFDPSVDVYAMKSHESSPKKEVYFMAIIDILTPYDTKKKAAHAAKTVKHGAG 392
P+ P + + + S ++ + F+ IIDIL Y KK H+ K + H G
Sbjct: 305 SPQ--------PYESMGGIPAFNSKGERLLVFIGIIDILQSYRLVKKLEHSWKALLHD-G 355
Query: 393 AEISTVNPEQYSKRFNEFMSNIL 415
+S P Y+ RF +FM + +
Sbjct: 356 DTVSVHRPSFYADRFQKFMCSTV 378
>1OHW-A nrPDB
Length = 472
Score = 33.9 bits (76), Expect = 0.12, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 7/108 (6%)
Query: 304 DEECENDGVGGNLLCSYGTPPDSPGNLLSFPR------FFGPGEFDPSVDVYAMKSHESS 357
DE G G D P ++++F + FF EF P+ +
Sbjct: 298 DEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGD 357
Query: 358 PKKEVYFMAIIDILTPYDTKKKAAHAAKTVKHGAGAEISTVNPEQYSK 405
P K + +I+I+ D AAHA K + G + P+ S+
Sbjct: 358 PSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLD-LQARYPQFISR 404
>4HZI-A nrPDB
Length = 294
Score = 31.6 bits (70), Expect = 0.70, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 222 VAREASDKEKAKDLPTFKDNDFLNEGQKLH----VGEESKKNFLEKLKRDVEFLAQLKIM 277
R+ S +E+ K L KD+D L++ +L+ GE+ K FL + + +FL IM
Sbjct: 142 YYRDPSPEEETKTLQILKDSDLLSKKDQLYNTLSSGEKKKILFLRSIVNEPDFL----IM 197
Query: 278 D 278
D
Sbjct: 198 D 198
>2YL9-A nrPDB
Length = 457
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 2/133 (1%)
Query: 235 LPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQLKIMDYSLLVGIHDVDRAEQE 294
+P + L + + + + K L +LKR V+ ++L D LL+G +D R +
Sbjct: 15 VPRGSHMEKLAKNKVISIDAGRKYFTLNQLKRIVDKASELGYSDVHLLLG-NDGLRFLLD 73
Query: 295 EMEVEERAEDEECENDGVGGNLLCSYGTPPDSPGNLLSFPRFFGPGEFDPSVDVYAMKSH 354
+M + +D + + D G L+ E+ S D+ + +
Sbjct: 74 DMTI-TANGKTYASDDVKKAIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAI 132
Query: 355 ESSPKKEVYFMAI 367
S + +A+
Sbjct: 133 NSPGHMDAMLVAM 145
>1M7B-A nrPDB
Length = 184
Score = 29.3 bits (64), Expect = 2.9, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 12/100 (12%)
Query: 82 HLFNKENLPSRFKFKEYCPMVFRNLRERFGIDDQDYQNSV--TRSAPI-----NSDSQGR 134
H+F K+ P + Y P VF N F ID Q + S+ T +P
Sbjct: 25 HVFAKDCFP-----ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 79
Query: 135 CGTRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVEC 174
R + +V + E+ +V C
Sbjct: 80 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 119
>1GWN-A nrPDB
Length = 205
Score = 29.3 bits (64), Expect = 3.0, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 12/100 (12%)
Query: 82 HLFNKENLPSRFKFKEYCPMVFRNLRERFGIDDQDYQNSV--TRSAPI-----NSDSQGR 134
H+F K+ P + Y P VF N F ID Q + S+ T +P
Sbjct: 46 HVFAKDCFP-----ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 100
Query: 135 CGTRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVEC 174
R + +V + E+ +V C
Sbjct: 101 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 140
>2EKC-A nrPDB
Length = 262
Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 10/106 (9%)
Query: 145 RRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVVT--- 201
F++ + E+ E+ ++KKY V T + + + D + ++ VT
Sbjct: 124 DGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAADEMTYFVSVTGTT 183
Query: 202 --RNVFSH-----RLTVHRKYDLKGSTVAREASDKEKAKDLPTFKD 240
R + ++ +R+ K V S KE A+++ +F D
Sbjct: 184 GAREKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEHAREIGSFAD 229
>6CDD-A nrPDB
Length = 474
Score = 28.9 bits (63), Expect = 4.4, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 236 PTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQLKIMDYSLLVGIHDVDRAEQEE 295
P F DN F E ++ +VGE + + + K + E A + + D+ LL IH + +EE
Sbjct: 375 PLFTDNIFPIENRE-YVGEAQEVSAVAKALKVHEADAPMNVSDFHLLCFIHQMSVLSKEE 433
Query: 296 M 296
Sbjct: 434 E 434
>6CHS-A nrPDB
Length = 659
Score = 28.5 bits (62), Expect = 5.1, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 236 PTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQLKIMDYSLLVGIHDVDRAEQEE 295
P F DN F E ++ +VGE + + + K + E A + + D+ LL IH + +EE
Sbjct: 503 PLFTDNIFPIENRE-YVGEAQEVSAVAKALKVHEADAPMNVSDFHLLCFIHQMSVLSKEE 561
Query: 296 M 296
Sbjct: 562 E 562
>3RM5-A nrPDB
Length = 550
Score = 28.5 bits (62), Expect = 5.8, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 104 RNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIKTVSSEDVAEMHNI 163
+ L+E FG+ D DY + R + R +R+ RR + + VA +
Sbjct: 418 KRLKEVFGVKDPDYFQKIKRGPAL------RAYSRYFNDVSRRGNWQEL----VASLTPC 467
Query: 164 LKKYHQFIVECHGNTLLPQ 182
L Y + + + G P+
Sbjct: 468 LMGYGEALTKMKGKVTAPE 486
>3LDA-A nrPDB
Length = 400
Score = 28.1 bits (61), Expect = 6.9, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 97 EYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGR 134
+ P+ ++ +RFG+D D N+V + N+D Q R
Sbjct: 223 TFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLR 260
>1SZP-A nrPDB
Length = 321
Score = 28.1 bits (61), Expect = 6.9, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 97 EYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGR 134
+ P+ ++ +RFG+D D N+V + N+D Q R
Sbjct: 144 TFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLR 181
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.315 0.133 0.350
Lambda K H
0.267 0.0405 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,450,382
Number of Sequences: 36641
Number of extensions: 631448
Number of successful extensions: 1816
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1772
Number of HSP's gapped (non-prelim): 53
length of query: 416
length of database: 10,336,785
effective HSP length: 100
effective length of query: 316
effective length of database: 6,672,685
effective search space: 2108568460
effective search space used: 2108568460
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 60 (27.7 bits)