BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P78345 (283 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 6AHU-C nrPDB 566 e-162 5DCV-A nrPDB 39 0.003 5T2A-v nrPDB 39 0.003 1XBI-A nrPDB 38 0.004 3CME-F nrPDB 38 0.006 5JPQ-U nrPDB 38 0.006 2FC3-A nrPDB 37 0.014 1K9M-H nrPDB 37 0.014 2LBW-A nrPDB 35 0.026 5G4U-C nrPDB 35 0.029 4V8M-Bx nrPDB 35 0.037 5XY3-G nrPDB 35 0.045 5OQL-V nrPDB 35 0.053 5UMD-J nrPDB 32 0.28 5XXB-G nrPDB 31 0.77 4D5Y-G nrPDB 30 0.85 4V6W-CG nrPDB 30 0.98 5LZT-G nrPDB 30 1.1 4V7E-CG nrPDB 30 1.5 5DGF-C2 nrPDB 30 1.5 5JUS-JB nrPDB 30 1.6 4V92-BM nrPDB 29 1.7 5LYB-c2 nrPDB 29 1.9 4V3P-LH nrPDB 29 2.0 2AIF-A nrPDB 29 2.1 4V8P-BF nrPDB 28 3.2 2ALE-A nrPDB 28 4.3 2OZB-A nrPDB 27 7.7 >6AHU-C nrPDB Length = 283 Score = 566 bits (1458), Expect = e-162, Method: Compositional matrix adjust. Identities = 283/283 (100%), Positives = 283/283 (100%) Query: 1 MAAAPQAPGRGSLRKTRPLVVKTSLNNPYIIRWSALESEDMHFILQTLEDRLKAIGLQKI 60 MAAAPQAPGRGSLRKTRPLVVKTSLNNPYIIRWSALESEDMHFILQTLEDRLKAIGLQKI Sbjct: 1 MAAAPQAPGRGSLRKTRPLVVKTSLNNPYIIRWSALESEDMHFILQTLEDRLKAIGLQKI 60 Query: 61 EDKKKKNKTPFLKKESREKCSIAVDISENLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEV 120 EDKKKKNKTPFLKKESREKCSIAVDISENLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEV Sbjct: 61 EDKKKKNKTPFLKKESREKCSIAVDISENLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEV 120 Query: 121 TRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIAPVIGLKCVLAL 180 TRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIAPVIGLKCVLAL Sbjct: 121 TRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIAPVIGLKCVLAL 180 Query: 181 AFKKNTTDFVDEVRAIIPRVPSLSVPWLQDRIEDSGENLETEPLESQDRELLDTSFEDLS 240 AFKKNTTDFVDEVRAIIPRVPSLSVPWLQDRIEDSGENLETEPLESQDRELLDTSFEDLS Sbjct: 181 AFKKNTTDFVDEVRAIIPRVPSLSVPWLQDRIEDSGENLETEPLESQDRELLDTSFEDLS 240 Query: 241 KPKRKLADGRQASVTLQPLKIKKLIPNPNKIRKPPKSKKATPK 283 KPKRKLADGRQASVTLQPLKIKKLIPNPNKIRKPPKSKKATPK Sbjct: 241 KPKRKLADGRQASVTLQPLKIKKLIPNPNKIRKPPKSKKATPK 283 >5DCV-A nrPDB Length = 132 Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 27/47 (57%) Query: 116 GVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVP 162 G NE T+A+ER + LV++ + V P I +HL L + +P VP Sbjct: 36 GTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVP 82 >5T2A-v nrPDB Length = 348 Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 32/199 (16%) Query: 2 AAAP-QAPGRGSLRKTRPLVVKTSLNNPY------IIRWSALESEDMHFILQTLEDRLK- 53 AA+P + P S RP + PY +RW + M + L+ RLK Sbjct: 99 AASPYKKPAVASHFAARPKNFGIGQDVPYARDLSRFMRWPTFVT--MQRKKRVLQRRLKV 156 Query: 54 --AIG-LQKIEDKKKKNKT--------PFLKKESREKCSIAVDISENLKEKKTDAKQQVS 102 A+ K+ D+ +N+ P +K RE+ A + EKK D K+ VS Sbjct: 157 PPALNQFTKVLDRASRNEALKLIKKYAPETRKARRERLHKAAE------EKKKDPKKTVS 210 Query: 103 GWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVP 162 P V G+ EVTRA+E+++ +V++ +V P + + L + +P V Sbjct: 211 TRAPLAV----VTGLQEVTRAIEKKQARMVVIANNVDPVELVLWMPNLCRANKIPYAIVK 266 Query: 163 RLSERIAPVIGLKCVLALA 181 ++ R+ IG K +A Sbjct: 267 DMA-RLGDAIGRKTATCVA 284 >1XBI-A nrPDB Length = 120 Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%) Query: 116 GVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIAPVIGLK 175 G NEVT+A+ER LV++ + VKP + +HL L + +P V + + GL+ Sbjct: 33 GANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVAS-KQDLGKAAGLE 91 Query: 176 CVLALAFKKNTTDFVDEVRAIIPRVPSL 203 + N D +E++ +I +V L Sbjct: 92 VAASSVAIINEGD-AEELKVLIEKVNVL 118 >3CME-F nrPDB Length = 120 Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Query: 116 GVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIAPVIGLK 175 G NE T+++ER LV V + V+P I H+ +L+ + VP V + + + GL+ Sbjct: 33 GTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQ-QDDLGHAAGLE 91 Query: 176 CVLALAFKKNTTDFVDEVRAIIPRVPSL 203 A A + + +V I +V L Sbjct: 92 VGSAAAAVTDAGEADADVEDIADKVEEL 119 >5JPQ-U nrPDB Length = 130 Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 7/88 (7%) Query: 116 GVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIAPVIGLK 175 G NE T+A+ER + LV++ + V+P I +HL L + +P V + + GL+ Sbjct: 38 GTNETTKAVERGQAKLVIIAEDVQPEEIVAHLPLLCDEKKIPYVYVSS-KKALGEACGLQ 96 Query: 176 CVLALAF---KKNTTDFVDEVRAIIPRV 200 A A D VDE II RV Sbjct: 97 VATASAAILEPGEAKDLVDE---IIKRV 121 >2FC3-A nrPDB Length = 124 Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 7/119 (5%) Query: 85 DISENLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMIT 144 ++ E+L EK +A ++ A ++ G NE T+A+ER LV++ + V P I Sbjct: 7 EVPEDLAEKAYEAVKR------ARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIV 60 Query: 145 SHLIQLSLSRSVPACQVPRLSERIAPVIGLKCVLALAFKKNTTDFVDEVRAIIPRVPSL 203 HL L + +P VP +R+ G++ A D VR I+ +V L Sbjct: 61 MHLPLLCDEKKIPYVYVPS-KKRLGEAAGIEVAAASVAIIEPGDAETLVREIVEKVKEL 118 >1K9M-H nrPDB Length = 119 Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 25/42 (59%) Query: 116 GVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVP 157 G NE T+++ER LV V + V+P I H+ +L+ + VP Sbjct: 32 GTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVP 73 >2LBW-A nrPDB Length = 121 Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 26/47 (55%) Query: 116 GVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVP 162 GV EV +AL + E LV++ + PA + SH+ L SVP +P Sbjct: 24 GVKEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIP 70 >5G4U-C nrPDB Length = 123 Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 116 GVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIAPVIGLK 175 G NE T+A+ER LV + + V P I +HL L ++VP V ++ + +G++ Sbjct: 35 GTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKND-LGRAVGIE 93 Query: 176 CVLALAFKKNTTDFVDEVRAIIPRVPSL 203 A A N + E+ +++ ++ L Sbjct: 94 VPCASAAIINEGELRKELGSLVEKIKGL 121 >4V8M-Bx nrPDB Length = 276 Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 5/91 (5%) Query: 92 EKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLS 151 EKK + K VS P V G+ EVTR +E++ LVL+ +V P + + L Sbjct: 128 EKKKNPKGTVSTKAPLCV----VSGLQEVTRTIEKKTARLVLIANNVDPIELVLWMPTLC 183 Query: 152 LSRSVPACQVPRLSERIAPVIGLKCVLALAF 182 + +P V + R+ IG K +AF Sbjct: 184 RANKIPYAIV-KDKARLGDAIGRKTATCVAF 213 >5XY3-G nrPDB Length = 244 Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Query: 110 RKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIA 169 +K L GV VT A+E ++ LV++ V P + + L + +P C V S R+ Sbjct: 119 KKALVQGVKNVTAAIESKKAQLVIIAHDVDPIELVIWMPALCRNLEIPYCIVKSKS-RLG 177 Query: 170 PVIGLKCVLALAF 182 ++G+K +A Sbjct: 178 QIVGMKTCSCVAL 190 >5OQL-V nrPDB Length = 127 Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 17/116 (14%) Query: 96 DAKQQVSGWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRS 155 D QQ S + +QL G NE T+++ R LV++ +P I H+ + ++ Sbjct: 23 DCVQQASHY------RQLKKGANETTKSVNRGTSELVILAADTQPLSIVLHIPLICEEKN 76 Query: 156 VPACQVPRLSERIAPVIGLKC-----VLALAFKKN-TTDFVDEVRAIIPRVPSLSV 205 VP VP ++A +G C V+A++ N +D ++RA+ +V L++ Sbjct: 77 VPYVYVP---SKVA--LGRACGVSRAVIAVSLTSNEASDLNSKIRALRDKVERLAM 127 >5UMD-J nrPDB Length = 283 Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 9/79 (11%) Query: 92 EKKTDAKQQVSGWTPAHVRKQ---------LAIGVNEVTRALERRELLLVLVCKSVKPAM 142 E KTD KQ++ + K L G+N +T+ +E ++ LV++ V P Sbjct: 119 ESKTDKKQRLLNKAKEALNKNITKDKKPLFLKYGINHITKLVENKKANLVVIANDVSPIE 178 Query: 143 ITSHLIQLSLSRSVPACQV 161 + L L + VP C V Sbjct: 179 LVLFLPALCRLKEVPYCIV 197 >5XXB-G nrPDB Length = 276 Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 113 LAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQV 161 + G+N VT +E ++ LV++ V P + + QL + VP C V Sbjct: 143 IKYGINHVTDLIEIKKAKLVVIAHDVTPVELVCFIPQLCRKKEVPYCIV 191 >4D5Y-G nrPDB Length = 266 Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%) Query: 113 LAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIAPVI 172 L GVN VT +E ++ LV++ V P + L L VP C + + R+ ++ Sbjct: 136 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYC-IIKGKARLGRLV 194 Query: 173 GLKCVLALAFKK-NTTD 188 K +AF + N+ D Sbjct: 195 HRKTCTTVAFTQVNSED 211 >4V6W-CG nrPDB Length = 271 Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 16/121 (13%) Query: 41 MHFILQTLEDRLKAIGLQKIEDKKKKNKTPFLKKESREKCSIAVDISENLKEKKTDAKQQ 100 +H QTL D+ A+ L K+ +K + ++P KK +K + A ++++ KK Sbjct: 85 IHQFSQTL-DKTTAVKLFKLLEKYRP-ESPLAKKLRLKKIAEAKAKGKDVEPKKK----- 137 Query: 101 VSGWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQ 160 P++V + G N VT+ +E+++ LV++ V P + L L VP C Sbjct: 138 -----PSYV----SAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCI 188 Query: 161 V 161 V Sbjct: 189 V 189 >5LZT-G nrPDB Length = 319 Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 19/100 (19%) Query: 113 LAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIAPVI 172 L GVN VT +E ++ LV++ V P + L L VP C + + R+ ++ Sbjct: 189 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYC-ILKGKARLGRLV 247 Query: 173 GLKCVLALAF------------------KKNTTDFVDEVR 194 K +AF + N D DE+R Sbjct: 248 HRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIR 287 >4V7E-CG nrPDB Length = 257 Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 17/97 (17%) Query: 115 IGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQV---PRLS----ER 167 G+N VT +E+ + LV++ V P + L L VP C V RL ++ Sbjct: 129 YGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKK 188 Query: 168 IAPVIGLKCV----------LALAFKKNTTDFVDEVR 194 A V+ L V + A K N D DEVR Sbjct: 189 TASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVR 225 >5DGF-C2 nrPDB Length = 142 Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 22/37 (59%) Query: 107 AHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMI 143 A V LA G+ E T+AL R E LLV++ SV A I Sbjct: 34 ALVHDGLARGLRESTKALTRGEALLVVLVSSVTEANI 70 >5JUS-JB nrPDB Length = 143 Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 22/37 (59%) Query: 107 AHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMI 143 A V LA G+ E T+AL R E LLV++ SV A I Sbjct: 35 ALVHDGLARGLRESTKALTRGEALLVVLVSSVTEANI 71 >4V92-BM nrPDB Length = 120 Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 22/37 (59%) Query: 107 AHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMI 143 A V LA G+ E T+AL R E LLV++ SV A I Sbjct: 12 ALVHDGLARGLRESTKALTRGEALLVVLVSSVTEANI 48 >5LYB-c2 nrPDB Length = 124 Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 22/37 (59%) Query: 107 AHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMI 143 A V LA G+ E T+AL R E LLV++ SV A I Sbjct: 16 ALVHDGLARGLRESTKALTRGEALLVVLVSSVTEANI 52 >4V3P-LH nrPDB Length = 201 Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 17/96 (17%) Query: 116 GVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQV---PRLS----ERI 168 G+N VT +E+ + LV++ V P + L L VP C V RL ++ Sbjct: 74 GLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKT 133 Query: 169 APVIGLKCV----------LALAFKKNTTDFVDEVR 194 A V+ L V + A K N D DEVR Sbjct: 134 ASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVR 169 >2AIF-A nrPDB Length = 135 Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%) Query: 87 SENLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSH 146 S +L K + QQ + KQL G NE T+AL R +VL+ +P I H Sbjct: 22 SPDLNNKIINLVQQACNY------KQLRKGANEATKALNRGIAEIVLLAADAEPLEILLH 75 Query: 147 L 147 L Sbjct: 76 L 76 >4V8P-BF nrPDB Length = 255 Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 23/49 (46%) Query: 113 LAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQV 161 L G+N +T +E ++ LV++ V P + L QL VP V Sbjct: 125 LKYGLNHITTLIENKQAKLVVIAHDVDPIELVIFLPQLCRKNDVPFAFV 173 >2ALE-A nrPDB Length = 134 Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 6/73 (8%) Query: 90 LKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQ 149 L ++ D QQ + +QL G NE T+ L R +++ +P I HL Sbjct: 16 LTQQILDVVQQAANL------RQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPL 69 Query: 150 LSLSRSVPACQVP 162 L ++VP VP Sbjct: 70 LCEDKNVPYVFVP 82 >2OZB-A nrPDB Length = 130 Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%) Query: 89 NLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLI 148 +L +K D QQ + KQL G NE T+ L R +++ +P I HL Sbjct: 19 HLTKKLLDLVQQSCNY------KQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLP 72 Query: 149 QLSLSRSVP 157 L ++VP Sbjct: 73 LLCEDKNVP 81 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 6AHU-C nrPDB 535 e-153 Sequences not found previously or not previously below threshold: 5T2A-v nrPDB 48 4e-06 2FC3-A nrPDB 41 7e-04 5JPQ-U nrPDB 40 0.001 1XBI-A nrPDB 39 0.002 5OQL-V nrPDB 38 0.004 5DCV-A nrPDB 38 0.005 3CME-F nrPDB 37 0.013 1K9M-H nrPDB 37 0.013 5G4U-C nrPDB 36 0.014 4V8M-Bx nrPDB 36 0.015 5LZT-G nrPDB 34 0.058 5XY3-G nrPDB 34 0.064 2LBW-A nrPDB 34 0.088 4V6W-CG nrPDB 34 0.11 4D5Y-G nrPDB 32 0.29 2AIF-A nrPDB 32 0.37 5UMD-J nrPDB 31 0.57 2ALE-A nrPDB 31 0.67 5XXB-G nrPDB 31 0.68 2OZB-A nrPDB 30 0.97 5LYB-c2 nrPDB 30 1.1 5JUS-JB nrPDB 30 1.1 5DGF-C2 nrPDB 30 1.1 4V92-BM nrPDB 30 1.1 4V3P-LH nrPDB 28 5.0 4V7E-CG nrPDB 27 8.4 4E0B-A nrPDB 27 8.4 2O3F-A nrPDB 27 8.7 >6AHU-C nrPDB Length = 283 Score = 535 bits (1379), Expect = e-153, Method: Composition-based stats. Identities = 283/283 (100%), Positives = 283/283 (100%) Query: 1 MAAAPQAPGRGSLRKTRPLVVKTSLNNPYIIRWSALESEDMHFILQTLEDRLKAIGLQKI 60 MAAAPQAPGRGSLRKTRPLVVKTSLNNPYIIRWSALESEDMHFILQTLEDRLKAIGLQKI Sbjct: 1 MAAAPQAPGRGSLRKTRPLVVKTSLNNPYIIRWSALESEDMHFILQTLEDRLKAIGLQKI 60 Query: 61 EDKKKKNKTPFLKKESREKCSIAVDISENLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEV 120 EDKKKKNKTPFLKKESREKCSIAVDISENLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEV Sbjct: 61 EDKKKKNKTPFLKKESREKCSIAVDISENLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEV 120 Query: 121 TRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIAPVIGLKCVLAL 180 TRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIAPVIGLKCVLAL Sbjct: 121 TRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIAPVIGLKCVLAL 180 Query: 181 AFKKNTTDFVDEVRAIIPRVPSLSVPWLQDRIEDSGENLETEPLESQDRELLDTSFEDLS 240 AFKKNTTDFVDEVRAIIPRVPSLSVPWLQDRIEDSGENLETEPLESQDRELLDTSFEDLS Sbjct: 181 AFKKNTTDFVDEVRAIIPRVPSLSVPWLQDRIEDSGENLETEPLESQDRELLDTSFEDLS 240 Query: 241 KPKRKLADGRQASVTLQPLKIKKLIPNPNKIRKPPKSKKATPK 283 KPKRKLADGRQASVTLQPLKIKKLIPNPNKIRKPPKSKKATPK Sbjct: 241 KPKRKLADGRQASVTLQPLKIKKLIPNPNKIRKPPKSKKATPK 283 >5T2A-v nrPDB Length = 348 Score = 48.2 bits (113), Expect = 4e-06, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 83/199 (41%), Gaps = 32/199 (16%) Query: 2 AAAP-QAPGRGSLRKTRPLVVKTSLNNPY------IIRWSALESEDMHFILQTLEDRLKA 54 AA+P + P S RP + PY +RW + M + L+ RLK Sbjct: 99 AASPYKKPAVASHFAARPKNFGIGQDVPYARDLSRFMRWPTFVT--MQRKKRVLQRRLKV 156 Query: 55 I----GLQKIEDKKKKNKT--------PFLKKESREKCSIAVDISENLKEKKTDAKQQVS 102 K+ D+ +N+ P +K RE+ A + EKK D K+ VS Sbjct: 157 PPALNQFTKVLDRASRNEALKLIKKYAPETRKARRERLHKAAE------EKKKDPKKTVS 210 Query: 103 GWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVP 162 P V G+ EVTRA+E+++ +V++ +V P + + L + +P V Sbjct: 211 TRAPLAV----VTGLQEVTRAIEKKQARMVVIANNVDPVELVLWMPNLCRANKIPYAIVK 266 Query: 163 RLSERIAPVIGLKCVLALA 181 ++ R+ IG K +A Sbjct: 267 DMA-RLGDAIGRKTATCVA 284 >2FC3-A nrPDB Length = 124 Score = 40.8 bits (94), Expect = 7e-04, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 7/122 (5%) Query: 82 IAVDISENLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPA 141 + ++ E+L EK +A ++ A ++ G NE T+A+ER LV++ + V P Sbjct: 4 VRFEVPEDLAEKAYEAVKR------ARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPP 57 Query: 142 MITSHLIQLSLSRSVPACQVPRLSERIAPVIGLKCVLALAFKKNTTDFVDEVRAIIPRVP 201 I HL L + +P VP +R+ G++ A D VR I+ +V Sbjct: 58 EIVMHLPLLCDEKKIPYVYVPS-KKRLGEAAGIEVAAASVAIIEPGDAETLVREIVEKVK 116 Query: 202 SL 203 L Sbjct: 117 EL 118 >5JPQ-U nrPDB Length = 130 Score = 39.7 bits (91), Expect = 0.001, Method: Composition-based stats. Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 11/129 (8%) Query: 72 LKKESREKCSIAVDISENLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRELLL 131 + K S K + D+++ + E AK+ SG ++ G NE T+A+ER + L Sbjct: 4 MSKASYVKFEVPQDLADKVLEAVRKAKE--SG--------KIKKGTNETTKAVERGQAKL 53 Query: 132 VLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIAPVIGLKCVLALAFKKNTTDFVD 191 V++ + V+P I +HL L + +P V + + GL+ A A + D Sbjct: 54 VIIAEDVQPEEIVAHLPLLCDEKKIPYVYVSS-KKALGEACGLQVATASAAILEPGEAKD 112 Query: 192 EVRAIIPRV 200 V II RV Sbjct: 113 LVDEIIKRV 121 >1XBI-A nrPDB Length = 120 Score = 38.9 bits (89), Expect = 0.002, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 2/93 (2%) Query: 111 KQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIAP 170 +++ G NEVT+A+ER LV++ + VKP + +HL L + +P V + + Sbjct: 28 QKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVAS-KQDLGK 86 Query: 171 VIGLKCVLALAFKKNTTDFVDEVRAIIPRVPSL 203 GL+ + N D +E++ +I +V L Sbjct: 87 AAGLEVAASSVAIINEGD-AEELKVLIEKVNVL 118 >5OQL-V nrPDB Length = 127 Score = 38.2 bits (87), Expect = 0.004, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 17/122 (13%) Query: 90 LKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQ 149 L ++ D QQ S + +QL G NE T+++ R LV++ +P I H+ Sbjct: 17 LVQELLDCVQQASHY------RQLKKGANETTKSVNRGTSELVILAADTQPLSIVLHIPL 70 Query: 150 LSLSRSVPACQVPRLSERIAPVIGLKC-----VLALAFKKN-TTDFVDEVRAIIPRVPSL 203 + ++VP VP ++A +G C V+A++ N +D ++RA+ +V L Sbjct: 71 ICEEKNVPYVYVP---SKVA--LGRACGVSRAVIAVSLTSNEASDLNSKIRALRDKVERL 125 Query: 204 SV 205 ++ Sbjct: 126 AM 127 >5DCV-A nrPDB Length = 132 Score = 37.8 bits (86), Expect = 0.005, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 116 GVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSE 166 G NE T+A+ER + LV++ + V P I +HL L + +P VP E Sbjct: 36 GTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKE 86 >3CME-F nrPDB Length = 120 Score = 36.6 bits (83), Expect = 0.013, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 25/42 (59%) Query: 116 GVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVP 157 G NE T+++ER LV V + V+P I H+ +L+ + VP Sbjct: 33 GTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVP 74 >1K9M-H nrPDB Length = 119 Score = 36.6 bits (83), Expect = 0.013, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 25/42 (59%) Query: 116 GVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVP 157 G NE T+++ER LV V + V+P I H+ +L+ + VP Sbjct: 32 GTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVP 73 >5G4U-C nrPDB Length = 123 Score = 36.2 bits (82), Expect = 0.014, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 116 GVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIAPVIGLK 175 G NE T+A+ER LV + + V P I +HL L ++VP V ++ + +G++ Sbjct: 35 GTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKND-LGRAVGIE 93 Query: 176 CVLALAFKKNTTDFVDEVRAIIPRVPSL 203 A A N + E+ +++ ++ L Sbjct: 94 VPCASAAIINEGELRKELGSLVEKIKGL 121 >4V8M-Bx nrPDB Length = 276 Score = 36.2 bits (82), Expect = 0.015, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 13/158 (8%) Query: 31 IRWSALESEDMHFILQTLEDRLKAI----GLQKIEDKKKKNKT-PFLKKESREKCSIAVD 85 +RW + M + L+ RLK K+ D+ +N+ +KK + E D Sbjct: 63 MRWPTFVT--MQRKKRVLQRRLKVPPALNQFTKVLDRSSRNELLKLVKKYAPETRKARRD 120 Query: 86 -ISENLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMIT 144 +++ +EKK + K VS P V G+ EVTR +E++ LVL+ +V P + Sbjct: 121 RLTKVAEEKKKNPKGTVSTKAPLCV----VSGLQEVTRTIEKKTARLVLIANNVDPIELV 176 Query: 145 SHLIQLSLSRSVPACQVPRLSERIAPVIGLKCVLALAF 182 + L + +P V + R+ IG K +AF Sbjct: 177 LWMPTLCRANKIPYAIV-KDKARLGDAIGRKTATCVAF 213 >5LZT-G nrPDB Length = 319 Score = 34.3 bits (77), Expect = 0.058, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 17/140 (12%) Query: 50 DRLKAIGLQKIEDKKKKNKTPFLKKESREKCSIAVDISENLKEKKTDAKQQVSGWTPAHV 109 DR A L K+ K + P K+E +++ EKK K V P + Sbjct: 141 DRQTATQLLKLAHKYR----PETKQEKKQRLLARA-------EKKAAGKGDVPTKRPPVL 189 Query: 110 RKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIA 169 R GVN VT +E ++ LV++ V P + L L VP C + + R+ Sbjct: 190 RA----GVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYC-ILKGKARLG 244 Query: 170 PVIGLKCVLALAFKK-NTTD 188 ++ K +AF + N+ D Sbjct: 245 RLVHRKTCTTVAFTQVNSED 264 >5XY3-G nrPDB Length = 244 Score = 34.3 bits (77), Expect = 0.064, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 6/97 (6%) Query: 88 ENLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHL 147 ++ ++ K D K SG +K L GV VT A+E ++ LV++ V P + + Sbjct: 102 DDAEKAKKDLKVAGSG-----NKKALVQGVKNVTAAIESKKAQLVIIAHDVDPIELVIWM 156 Query: 148 IQLSLSRSVPACQVPRLSERIAPVIGLKCVLALAFKK 184 L + +P C V S R+ ++G+K +A + Sbjct: 157 PALCRNLEIPYCIVKSKS-RLGQIVGMKTCSCVALAE 192 >2LBW-A nrPDB Length = 121 Score = 33.9 bits (76), Expect = 0.088, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 28/52 (53%) Query: 111 KQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVP 162 K + GV EV +AL + E LV++ + PA + SH+ L SVP +P Sbjct: 19 KNVKRGVKEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIP 70 >4V6W-CG nrPDB Length = 271 Score = 33.5 bits (75), Expect = 0.11, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 16/121 (13%) Query: 41 MHFILQTLEDRLKAIGLQKIEDKKKKNKTPFLKKESREKCSIAVDISENLKEKKTDAKQQ 100 +H QTL D+ A+ L K+ +K + ++P KK +K + A ++++ KK Sbjct: 85 IHQFSQTL-DKTTAVKLFKLLEKYRP-ESPLAKKLRLKKIAEAKAKGKDVEPKKK----- 137 Query: 101 VSGWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQ 160 P++V + G N VT+ +E+++ LV++ V P + L L VP C Sbjct: 138 -----PSYV----SAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCI 188 Query: 161 V 161 V Sbjct: 189 V 189 >4D5Y-G nrPDB Length = 266 Score = 32.0 bits (71), Expect = 0.29, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 17/140 (12%) Query: 50 DRLKAIGLQKIEDKKKKNKTPFLKKESREKCSIAVDISENLKEKKTDAKQQVSGWTPAHV 109 DR A L K+ K + P K+E +++ EKK K V P + Sbjct: 88 DRQTATQLLKLAHKYR----PETKQEKKQRLLARA-------EKKAAGKGDVPTKRPPVL 136 Query: 110 RKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIA 169 R GVN VT +E ++ LV++ V P + L L VP C + + R+ Sbjct: 137 RA----GVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYC-IIKGKARLG 191 Query: 170 PVIGLKCVLALAFKK-NTTD 188 ++ K +AF + N+ D Sbjct: 192 RLVHRKTCTTVAFTQVNSED 211 >2AIF-A nrPDB Length = 135 Score = 31.6 bits (70), Expect = 0.37, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 6/71 (8%) Query: 87 SENLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSH 146 S +L K + QQ + KQL G NE T+AL R +VL+ +P I H Sbjct: 22 SPDLNNKIINLVQQACNY------KQLRKGANEATKALNRGIAEIVLLAADAEPLEILLH 75 Query: 147 LIQLSLSRSVP 157 L + ++ P Sbjct: 76 LPLVCEDKNTP 86 >5UMD-J nrPDB Length = 283 Score = 31.2 bits (69), Expect = 0.57, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 9/79 (11%) Query: 92 EKKTDAKQQVSGWTPAHVRKQ---------LAIGVNEVTRALERRELLLVLVCKSVKPAM 142 E KTD KQ++ + K L G+N +T+ +E ++ LV++ V P Sbjct: 119 ESKTDKKQRLLNKAKEALNKNITKDKKPLFLKYGINHITKLVENKKANLVVIANDVSPIE 178 Query: 143 ITSHLIQLSLSRSVPACQV 161 + L L + VP C V Sbjct: 179 LVLFLPALCRLKEVPYCIV 197 >2ALE-A nrPDB Length = 134 Score = 30.8 bits (68), Expect = 0.67, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 25/52 (48%) Query: 111 KQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVP 162 +QL G NE T+ L R +++ +P I HL L ++VP VP Sbjct: 31 RQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVP 82 >5XXB-G nrPDB Length = 276 Score = 30.8 bits (68), Expect = 0.68, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%) Query: 88 ENLKEKKT----DAKQQVSGWTPAHVRKQLAI--GVNEVTRALERRELLLVLVCKSVKPA 141 E EKK +A++Q +G A +K + I G+N VT +E ++ LV++ V P Sbjct: 113 ETRAEKKQRLLQEAERQSAG-GAAGGKKPVMIKYGINHVTDLIEIKKAKLVVIAHDVTPV 171 Query: 142 MITSHLIQLSLSRSVPACQV 161 + + QL + VP C V Sbjct: 172 ELVCFIPQLCRKKEVPYCIV 191 >2OZB-A nrPDB Length = 130 Score = 30.4 bits (67), Expect = 0.97, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%) Query: 89 NLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLI 148 +L +K D QQ + KQL G NE T+ L R +++ +P I HL Sbjct: 19 HLTKKLLDLVQQSCNY------KQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLP 72 Query: 149 QLSLSRSVP 157 L ++VP Sbjct: 73 LLCEDKNVP 81 >5LYB-c2 nrPDB Length = 124 Score = 30.1 bits (66), Expect = 1.1, Method: Composition-based stats. Identities = 18/37 (48%), Positives = 22/37 (59%) Query: 107 AHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMI 143 A V LA G+ E T+AL R E LLV++ SV A I Sbjct: 16 ALVHDGLARGLRESTKALTRGEALLVVLVSSVTEANI 52 >5JUS-JB nrPDB Length = 143 Score = 30.1 bits (66), Expect = 1.1, Method: Composition-based stats. Identities = 18/37 (48%), Positives = 22/37 (59%) Query: 107 AHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMI 143 A V LA G+ E T+AL R E LLV++ SV A I Sbjct: 35 ALVHDGLARGLRESTKALTRGEALLVVLVSSVTEANI 71 >5DGF-C2 nrPDB Length = 142 Score = 30.1 bits (66), Expect = 1.1, Method: Composition-based stats. Identities = 18/37 (48%), Positives = 22/37 (59%) Query: 107 AHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMI 143 A V LA G+ E T+AL R E LLV++ SV A I Sbjct: 34 ALVHDGLARGLRESTKALTRGEALLVVLVSSVTEANI 70 >4V92-BM nrPDB Length = 120 Score = 30.1 bits (66), Expect = 1.1, Method: Composition-based stats. Identities = 18/37 (48%), Positives = 22/37 (59%) Query: 107 AHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMI 143 A V LA G+ E T+AL R E LLV++ SV A I Sbjct: 12 ALVHDGLARGLRESTKALTRGEALLVVLVSSVTEANI 48 >4V3P-LH nrPDB Length = 201 Score = 27.8 bits (60), Expect = 5.0, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 17/96 (17%) Query: 116 GVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQV---PRLS----ERI 168 G+N VT +E+ + LV++ V P + L L VP C V RL ++ Sbjct: 74 GLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKT 133 Query: 169 APVIGLKCV----------LALAFKKNTTDFVDEVR 194 A V+ L V + A K N D DEVR Sbjct: 134 ASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVR 169 >4V7E-CG nrPDB Length = 257 Score = 27.4 bits (59), Expect = 8.4, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 17/96 (17%) Query: 116 GVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQV---PRLS----ERI 168 G+N VT +E+ + LV++ V P + L L VP C V RL ++ Sbjct: 130 GLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKT 189 Query: 169 APVIGLKCV----------LALAFKKNTTDFVDEVR 194 A V+ L V + A K N D DEVR Sbjct: 190 ASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVR 225 >4E0B-A nrPDB Length = 313 Score = 27.4 bits (59), Expect = 8.4, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 7/82 (8%) Query: 106 PAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLS 165 P HV + G + T ALE +++L+ + KP M + L +V A V L+ Sbjct: 53 PTHVSIKGYAG-EDPTPALEGADVVLISAGVARKPGMDRADLF------NVNAGIVKSLA 105 Query: 166 ERIAPVIGLKCVLALAFKKNTT 187 ERIA V C+ + NTT Sbjct: 106 ERIAVVCPNACIGIITNPVNTT 127 >2O3F-A nrPDB Length = 111 Score = 27.0 bits (58), Expect = 8.7, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 30/53 (56%) Query: 86 ISENLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSV 138 I +++K K ++++++ + AH K + VNE++ + ++ +CKS+ Sbjct: 11 IIQSMKHKLPPSERKLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSL 63 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.315 0.131 0.368 Lambda K H 0.267 0.0411 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,163,570 Number of Sequences: 36641 Number of extensions: 376272 Number of successful extensions: 1126 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 1062 Number of HSP's gapped (non-prelim): 74 length of query: 283 length of database: 10,336,785 effective HSP length: 96 effective length of query: 187 effective length of database: 6,819,249 effective search space: 1275199563 effective search space used: 1275199563 T: 11 A: 40 X1: 15 ( 6.8 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 58 (26.9 bits)