BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P76015
         (356 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

1OI2-A nrPDB                                                          733   0.0  
3CT4-A nrPDB                                                          280   9e-76
2IU6-A nrPDB                                                          187   6e-48
1UN9-A nrPDB                                                          156   2e-38
2ZIG-A nrPDB                                                           31   0.95 
5ZQC-A nrPDB                                                           30   2.4  
5A3V-A nrPDB                                                           29   3.1  
3JAP-g nrPDB                                                           28   6.3  

>1OI2-A nrPDB
          Length = 366

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/356 (100%), Positives = 356/356 (100%)

Query: 1   MKKLINDVQDVLDEQLAGLAKAHPSLTLHQDPVYVTRADAPVAGKVALLSGGGSGHEPMH 60
           MKKLINDVQDVLDEQLAGLAKAHPSLTLHQDPVYVTRADAPVAGKVALLSGGGSGHEPMH
Sbjct: 11  MKKLINDVQDVLDEQLAGLAKAHPSLTLHQDPVYVTRADAPVAGKVALLSGGGSGHEPMH 70

Query: 61  CGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETATELL 120
           CGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETATELL
Sbjct: 71  CGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETATELL 130

Query: 121 HDSGVKVTTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLDACAELGRKL 180
           HDSGVKVTTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLDACAELGRKL
Sbjct: 131 HDSGVKVTTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLDACAELGRKL 190

Query: 181 NNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDQTVDEMFD 240
           NNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDQTVDEMFD
Sbjct: 191 NNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDQTVDEMFD 250

Query: 241 TLLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRL 300
           TLLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRL
Sbjct: 251 TLLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRL 310

Query: 301 TTRCQQAGLTIERNLIGAYCTSLDMTGFSITLLKVDDETLALWDAPVHTPALNWGK 356
           TTRCQQAGLTIERNLIGAYCTSLDMTGFSITLLKVDDETLALWDAPVHTPALNWGK
Sbjct: 311 TTRCQQAGLTIERNLIGAYCTSLDMTGFSITLLKVDDETLALWDAPVHTPALNWGK 366


>3CT4-A nrPDB
          Length = 332

 Score =  280 bits (715), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 152/355 (42%), Positives = 208/355 (58%), Gaps = 27/355 (7%)

Query: 2   KKLINDVQDVLDEQLAGLAKAHPSLTLHQDPVYVTRADAPVAGKVALLSGGGSGHEPMHC 61
           +K+IN  QDV+ E L GL  A+  L        + +  +P +GKVAL+SGGGSGHEP H 
Sbjct: 4   EKIINQPQDVVSEMLDGLTYAYGDLIEKVPDFEIIQRKSPKSGKVALVSGGGSGHEPAHA 63

Query: 62  GYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETATELLH 121
           G++G+GMLS A  G IFTSPTPD+I+E     D G GVLLIIKNY GD++NFE A E+  
Sbjct: 64  GFVGEGMLSAAVCGAIFTSPTPDQIYEAIKSADEGAGVLLIIKNYLGDVMNFEMAREMAE 123

Query: 122 DSGVKVTTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLDACAELGRKLN 181
              +KV  +++DDD+AV++SLYT GRRGVA TVL+ K++GAAA +  SLD   +L  K+ 
Sbjct: 124 MEEIKVEQIIVDDDIAVENSLYTQGRRGVAGTVLVHKILGAAAHQEASLDEIKDLADKVV 183

Query: 182 NQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDQTVDEMFDT 241
               +IG+AL A TVP  GKP F L DNE+E+GVGIH EPG  R    +  +   E+   
Sbjct: 184 KNIKTIGLALSAATVPEVGKPGFVLDDNEIEYGVGIHSEPGYRREKMKTSYELATELV-- 241

Query: 242 LLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRLT 301
               G      +F                  ++G +   LVN +GATPL E +   N + 
Sbjct: 242 ----GKLKEEFKF------------------EAGQKYGILVNGMGATPLMEQFIFMNDVA 279

Query: 302 TRCQQAGLTIERNLIGAYCTSLDMTGFSITLLKV-DDETLALWDAPVHTPALNWG 355
               +  + I    +G Y TS+DM G S+T++K+ DD+ L   +  V T  ++WG
Sbjct: 280 KLLTEENIEILFKKVGNYMTSIDMAGLSLTMIKLEDDQWLKNLNEDVKT--ISWG 332


>2IU6-A nrPDB
          Length = 336

 Score =  187 bits (475), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 172/341 (50%), Gaps = 36/341 (10%)

Query: 3   KLINDVQDVLDEQLAGLAKAHPSLT------LHQDPVYVTRADAPVAGKVALLSGGGSGH 56
           +  N   ++ +E L G+   +P LT      +  D  Y  +        V ++SGGGSGH
Sbjct: 2   EFYNSTNEIPEEMLKGIDLTYPQLTYLPETGILYDNTYNEKT-------VPIISGGGSGH 54

Query: 57  EPMHCGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETA 116
           EP H GY+G GML+ A  G +F  P    I +   QV+ G+GV +IIKN+  D+  F  A
Sbjct: 55  EPAHVGYVGSGMLAAAVTGPLFIPPKSKNILKAIRQVNSGKGVFVIIKNFEADLKEFNEA 114

Query: 117 TELLHDSGVKVTTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLDACAEL 176
            +     G+ V  +V  DD++V    +    RGVA T+L+ K++GA A+ G S+D   +L
Sbjct: 115 IKEARTEGIDVRYIVSHDDISVNAYNFHKRHRGVAGTILLHKILGAFAKEGGSIDEIEQL 174

Query: 177 GRKLNNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDQTVD 236
              L+ + +++G+AL     P   K SF LA++E+ FG+GIHGEPG     F   ++   
Sbjct: 175 ALSLSPEIYTLGVALAPVHFPHQ-KTSFVLAEDEVSFGIGIHGEPGYRVEKFEGSERIAI 233

Query: 237 EMFDTLLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGV 296
           E+ + L                + +WQ+        ++    I LVN LG+T L ELY  
Sbjct: 234 ELVNKLKA--------------EINWQK--------KANKNYILLVNGLGSTTLMELYSF 271

Query: 297 YNRLTTRCQQAGLTIERNLIGAYCTSLDMTGFSITLLKVDD 337
              +    +  GL+++   +G   TS DM+G S+TL  V D
Sbjct: 272 QYDVMRLLELEGLSVKFCKVGNLMTSCDMSGISLTLCSVKD 312


>1UN9-A nrPDB
          Length = 552

 Score =  156 bits (394), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/331 (32%), Positives = 158/331 (47%), Gaps = 39/331 (11%)

Query: 28  LHQDPVY--VTRADAPVAGKVALLSGGGSGHEPMHCGYIGQGMLSGACPGEIFTSPTPDK 85
           L  DP    V R D      VA++SGGGSGHEP H G+IG+GML+ A  G++F SP+ D 
Sbjct: 32  LESDPAIRIVVRRDLN-KNNVAVISGGGSGHEPAHVGFIGKGMLTAAVCGDVFASPSVDA 90

Query: 86  IFECAMQVDGGEGVLLIIKNYTGDILNFETATELLHDSGVKVTTVVIDDDVAVKDSLYTA 145
           +      V G  G LLI+KNYTGD LNF  A E     G  V  +++ DD+++ D+ +  
Sbjct: 91  VLTAIQAVTGEAGCLLIVKNYTGDRLNFGLAAEKARRLGYNVEMLIVGDDISLPDNKHP- 149

Query: 146 GRRGVANTVLIEKLVGAAAERGDSLDACAELGRKLNNQGHSIGIALGACTVPAAGKPSFT 205
             RG+A T+L+ K+ G  AERG +L       +   +   S+G+AL +C +P     +  
Sbjct: 150 --RGIAGTILVHKIAGYFAERGYNLATVLREAQYAASNTFSLGVALSSCHLPQETDAAPR 207

Query: 206 LADNEMEFGVGIHGEPGIDRRPFSSLDQTVDEMFDTLLVNGSYHRTLRFWDYQQGSWQEE 265
                 E G+GIHGEPG       +  Q V+ M D LL                      
Sbjct: 208 HHPGHAELGMGIHGEPGASVIDTQNSAQVVNLMVDKLLA--------------------- 246

Query: 266 QQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRLTTRCQQAGLTIERNLIG--AYCTSL 323
                 L    R+  ++NNLG   ++E+  +   L +    + +     LIG  +  T+L
Sbjct: 247 -----ALPETGRLAVMINNLGGVSVAEMAIITRELASSPLHSRIDW---LIGPASLVTAL 298

Query: 324 DMTGFSITLLKVDDETLALWDAPVHTPALNW 354
           DM GFS+T + +++         V T   NW
Sbjct: 299 DMKGFSLTAIVLEESIEKALLTEVETS--NW 327


>2ZIG-A nrPDB
          Length = 297

 Score = 30.8 bits (68), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 61/153 (39%), Gaps = 20/153 (13%)

Query: 188 GIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDQTVDEMFDTLLVNGS 247
           G+ LG    P A      +   E+E+ + +  +PG  R+P      T ++   + L    
Sbjct: 150 GVFLGKPYEPGA------IIKTEIEY-ILMQRKPGGYRKP------TQEQREKSRLPKED 196

Query: 248 YHRTLR-FWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRLTTRCQQ 306
           +HR  R  WD   G   ++     PL+  +R++ + + +G   L    G    L    + 
Sbjct: 197 FHRFFRQIWDDIPGESTKDHPAPFPLELAERLVRMFSFVGDVVLDPFAGTGTTLIAAARW 256

Query: 307 AGLTIERNLIGAYCT------SLDMTGFSITLL 333
               +   L+  Y        + ++ GFS+ +L
Sbjct: 257 GRRALGVELVPRYAQLAKERFAREVPGFSLEVL 289


>5ZQC-A nrPDB
          Length = 276

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 9/81 (11%)

Query: 126 KVTTVVIDDDVAVKDSLY------TAGRRGVANTVLIEKLVGAAAERGDSLDACAELGRK 179
           K+  V +DD  AV  SLY      T   R + + +L      AA   GD LD  A+  ++
Sbjct: 86  KLDLVRLDDPSAV--SLYAITQKRTWSVRDLYSAMLTMSANDAAETLGDRLDG-ADFPKE 142

Query: 180 LNNQGHSIGIALGACTVPAAG 200
           +NNQ   +G++     V A+G
Sbjct: 143 MNNQAKKLGMSSKTTFVSASG 163


>5A3V-A nrPDB
          Length = 329

 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 12/74 (16%)

Query: 272 LQSGDRVIALVNNLGATPLSELYGVYNRLTTRCQQ------------AGLTIERNLIGAY 319
            ++GD+V+A++++LG   L+E      +LT +  Q            AGLT  + L    
Sbjct: 87  FKAGDKVVAVLSHLGGGGLAEFAVATEKLTVKRPQEVGAAEAAALPVAGLTALQALTNPA 146

Query: 320 CTSLDMTGFSITLL 333
              LD TG    +L
Sbjct: 147 GLKLDGTGKKANIL 160


>3JAP-g nrPDB
          Length = 326

 Score = 28.1 bits (61), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 6/60 (10%)

Query: 203 SFTLADNEMEFGVGIHGEPGIDRRPFSSLDQTVDEMFD-TLLVNGSYHRTLRFWDYQQGS 261
           S+ L +NE +FGV +    G      S + Q V    D    V+ S+ +TLR W+   G+
Sbjct: 45  SWRLTENEQQFGVPVRSYKG-----HSHIVQDVVVSADGNYAVSASWDKTLRLWNLATGN 99


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

1OI2-A nrPDB                                                          563   e-161
3CT4-A nrPDB                                                          466   e-132
2IU6-A nrPDB                                                          438   e-123
1UN9-A nrPDB                                                          389   e-108

Sequences not found previously or not previously below threshold:

2VC6-A nrPDB                                                           38   0.006
6IUM-B nrPDB                                                           33   0.20 
5HDM-A nrPDB                                                           32   0.41 
2JGQ-A nrPDB                                                           32   0.41 
3OAJ-A nrPDB                                                           32   0.53 
2RFG-A nrPDB                                                           32   0.55 
4FHA-A nrPDB                                                           31   0.73 
4KWB-A nrPDB                                                           31   1.3  
3RST-A nrPDB                                                           30   1.5  
5E59-A nrPDB                                                           30   1.8  
5C9E-A nrPDB                                                           30   2.1  
4FC7-A nrPDB                                                           29   2.6  
5A9Q-4 nrPDB                                                           29   4.5  
1O9G-A nrPDB                                                           28   7.5  


CONVERGED!
>1OI2-A nrPDB
          Length = 366

 Score =  563 bits (1450), Expect = e-161,   Method: Composition-based stats.
 Identities = 356/356 (100%), Positives = 356/356 (100%)

Query: 1   MKKLINDVQDVLDEQLAGLAKAHPSLTLHQDPVYVTRADAPVAGKVALLSGGGSGHEPMH 60
           MKKLINDVQDVLDEQLAGLAKAHPSLTLHQDPVYVTRADAPVAGKVALLSGGGSGHEPMH
Sbjct: 11  MKKLINDVQDVLDEQLAGLAKAHPSLTLHQDPVYVTRADAPVAGKVALLSGGGSGHEPMH 70

Query: 61  CGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETATELL 120
           CGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETATELL
Sbjct: 71  CGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETATELL 130

Query: 121 HDSGVKVTTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLDACAELGRKL 180
           HDSGVKVTTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLDACAELGRKL
Sbjct: 131 HDSGVKVTTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLDACAELGRKL 190

Query: 181 NNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDQTVDEMFD 240
           NNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDQTVDEMFD
Sbjct: 191 NNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDQTVDEMFD 250

Query: 241 TLLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRL 300
           TLLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRL
Sbjct: 251 TLLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRL 310

Query: 301 TTRCQQAGLTIERNLIGAYCTSLDMTGFSITLLKVDDETLALWDAPVHTPALNWGK 356
           TTRCQQAGLTIERNLIGAYCTSLDMTGFSITLLKVDDETLALWDAPVHTPALNWGK
Sbjct: 311 TTRCQQAGLTIERNLIGAYCTSLDMTGFSITLLKVDDETLALWDAPVHTPALNWGK 366


>3CT4-A nrPDB
          Length = 332

 Score =  466 bits (1198), Expect = e-132,   Method: Composition-based stats.
 Identities = 152/355 (42%), Positives = 208/355 (58%), Gaps = 27/355 (7%)

Query: 2   KKLINDVQDVLDEQLAGLAKAHPSLTLHQDPVYVTRADAPVAGKVALLSGGGSGHEPMHC 61
           +K+IN  QDV+ E L GL  A+  L        + +  +P +GKVAL+SGGGSGHEP H 
Sbjct: 4   EKIINQPQDVVSEMLDGLTYAYGDLIEKVPDFEIIQRKSPKSGKVALVSGGGSGHEPAHA 63

Query: 62  GYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETATELLH 121
           G++G+GMLS A  G IFTSPTPD+I+E     D G GVLLIIKNY GD++NFE A E+  
Sbjct: 64  GFVGEGMLSAAVCGAIFTSPTPDQIYEAIKSADEGAGVLLIIKNYLGDVMNFEMAREMAE 123

Query: 122 DSGVKVTTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLDACAELGRKLN 181
              +KV  +++DDD+AV++SLYT GRRGVA TVL+ K++GAAA +  SLD   +L  K+ 
Sbjct: 124 MEEIKVEQIIVDDDIAVENSLYTQGRRGVAGTVLVHKILGAAAHQEASLDEIKDLADKVV 183

Query: 182 NQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDQTVDEMFDT 241
               +IG+AL A TVP  GKP F L DNE+E+GVGIH EPG  R    +  +   E+   
Sbjct: 184 KNIKTIGLALSAATVPEVGKPGFVLDDNEIEYGVGIHSEPGYRREKMKTSYELATELV-- 241

Query: 242 LLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRLT 301
               G      +F                  ++G +   LVN +GATPL E +   N + 
Sbjct: 242 ----GKLKEEFKF------------------EAGQKYGILVNGMGATPLMEQFIFMNDVA 279

Query: 302 TRCQQAGLTIERNLIGAYCTSLDMTGFSITLLKV-DDETLALWDAPVHTPALNWG 355
               +  + I    +G Y TS+DM G S+T++K+ DD+ L   +  V T  ++WG
Sbjct: 280 KLLTEENIEILFKKVGNYMTSIDMAGLSLTMIKLEDDQWLKNLNEDVKT--ISWG 332


>2IU6-A nrPDB
          Length = 336

 Score =  438 bits (1127), Expect = e-123,   Method: Composition-based stats.
 Identities = 117/359 (32%), Positives = 179/359 (49%), Gaps = 39/359 (10%)

Query: 3   KLINDVQDVLDEQLAGLAKAHPSLT------LHQDPVYVTRADAPVAGKVALLSGGGSGH 56
           +  N   ++ +E L G+   +P LT      +  D  Y  +        V ++SGGGSGH
Sbjct: 2   EFYNSTNEIPEEMLKGIDLTYPQLTYLPETGILYDNTYNEKT-------VPIISGGGSGH 54

Query: 57  EPMHCGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETA 116
           EP H GY+G GML+ A  G +F  P    I +   QV+ G+GV +IIKN+  D+  F  A
Sbjct: 55  EPAHVGYVGSGMLAAAVTGPLFIPPKSKNILKAIRQVNSGKGVFVIIKNFEADLKEFNEA 114

Query: 117 TELLHDSGVKVTTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLDACAEL 176
            +     G+ V  +V  DD++V    +    RGVA T+L+ K++GA A+ G S+D   +L
Sbjct: 115 IKEARTEGIDVRYIVSHDDISVNAYNFHKRHRGVAGTILLHKILGAFAKEGGSIDEIEQL 174

Query: 177 GRKLNNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDQTVD 236
              L+ + +++G+AL     P   K SF LA++E+ FG+GIHGEPG     F   ++   
Sbjct: 175 ALSLSPEIYTLGVALAPVHFPHQ-KTSFVLAEDEVSFGIGIHGEPGYRVEKFEGSERIAI 233

Query: 237 EMFDTLLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGV 296
           E+ + L                + +WQ+        ++    I LVN LG+T L ELY  
Sbjct: 234 ELVNKLKA--------------EINWQK--------KANKNYILLVNGLGSTTLMELYSF 271

Query: 297 YNRLTTRCQQAGLTIERNLIGAYCTSLDMTGFSITLLKVDD-ETLALWDAPVHTPALNW 354
              +    +  GL+++   +G   TS DM+G S+TL  V D + L   + P  T A  W
Sbjct: 272 QYDVMRLLELEGLSVKFCKVGNLMTSCDMSGISLTLCSVKDPKWLDYLNVP--TGAFAW 328


>1UN9-A nrPDB
          Length = 552

 Score =  389 bits (999), Expect = e-108,   Method: Composition-based stats.
 Identities = 112/358 (31%), Positives = 166/358 (46%), Gaps = 42/358 (11%)

Query: 4   LINDVQDVLDEQLAGLAKAHP---SLTLHQDPVY--VTRADAPVAGKVALLSGGGSGHEP 58
             N    ++ + + G   A P      L  DP    V R D      VA++SGGGSGHEP
Sbjct: 5   FFNQRTHLVSDVIDGAIIASPWNNLARLESDPAIRIVVRRDLN-KNNVAVISGGGSGHEP 63

Query: 59  MHCGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETATE 118
            H G+IG+GML+ A  G++F SP+ D +      V G  G LLI+KNYTGD LNF  A E
Sbjct: 64  AHVGFIGKGMLTAAVCGDVFASPSVDAVLTAIQAVTGEAGCLLIVKNYTGDRLNFGLAAE 123

Query: 119 LLHDSGVKVTTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLDACAELGR 178
                G  V  +++ DD+++ D+ +    RG+A T+L+ K+ G  AERG +L       +
Sbjct: 124 KARRLGYNVEMLIVGDDISLPDNKHP---RGIAGTILVHKIAGYFAERGYNLATVLREAQ 180

Query: 179 KLNNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDQTVDEM 238
              +   S+G+AL +C +P     +        E G+GIHGEPG       +  Q V+ M
Sbjct: 181 YAASNTFSLGVALSSCHLPQETDAAPRHHPGHAELGMGIHGEPGASVIDTQNSAQVVNLM 240

Query: 239 FDTLLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYN 298
            D LL                            L    R+  ++NNLG   ++E+  +  
Sbjct: 241 VDKLLA--------------------------ALPETGRLAVMINNLGGVSVAEMAIITR 274

Query: 299 RLTTRCQQAGLTIERNLIG--AYCTSLDMTGFSITLLKVDDETLALWDAPVHTPALNW 354
            L +    + +     LIG  +  T+LDM GFS+T + +++         V T   NW
Sbjct: 275 ELASSPLHSRIDW---LIGPASLVTALDMKGFSLTAIVLEESIEKALLTEVETS--NW 327


>2VC6-A nrPDB
          Length = 292

 Score = 37.9 bits (86), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 4/95 (4%)

Query: 18  GLAKAHPSLTLHQDPVYVTRADAPVAGKVALLSGGGSGHEPMHCGYIGQGMLSGA----C 73
           G     P+L+  +    V        G+V +++G GS        ++     +GA     
Sbjct: 42  GTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLI 101

Query: 74  PGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTG 108
               +  PT + I++    +D    + +I+ N  G
Sbjct: 102 VSPYYNKPTQEGIYQHFKAIDAASTIPIIVYNIPG 136


>6IUM-B nrPDB
          Length = 701

 Score = 32.9 bits (73), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 50/149 (33%), Gaps = 15/149 (10%)

Query: 43  AGKVALLSGGGSGHEPMHCGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLI 102
           A K+  +  G    +      IG G + G        +  P  I E   +     GV +I
Sbjct: 277 ASKIPDVPEGTPTRKIEKVAVIGAGTMGGGISMNFLNAGIPVTILETKQEALD-RGVGII 335

Query: 103 IKNYTGDILNFETATELLHDSGVKVTTVVIDDDVAVKDSLYTA--GRRGVANTVLIEKLV 160
            KNY       +   E +      ++T +  DD+   D +  A     GV  TV      
Sbjct: 336 RKNYENSAKKGKLTQEKVEQRMGLLSTTLSYDDLKDADLIIEAVFEEMGVKETVF----- 390

Query: 161 GAAAERGDSLDACAELGRKLNNQGHSIGI 189
                    LD  A+ G  L +   ++ +
Sbjct: 391 -------KKLDEVAKQGAILASNTSTLDV 412


>5HDM-A nrPDB
          Length = 434

 Score = 32.1 bits (71), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 59  MHCGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKN-YTGDILNFETAT 117
            H G I   +L        F  PTP+ I     Q+    GVLLI     TG  L +  A 
Sbjct: 202 AHKGEISAVILEPVVGNSGFIPPTPEFI-NGLRQLTKDNGVLLIFDEVMTGFRLAYGGAQ 260

Query: 118 E 118
           E
Sbjct: 261 E 261


>2JGQ-A nrPDB
          Length = 233

 Score = 32.1 bits (71), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%)

Query: 2   KKLINDVQDVLDEQLAGLAKAHPSLTLHQDPVYVTRADAPVA 43
           +K    V++ L EQL  +   +P+L +  +P++        +
Sbjct: 129 EKGFKAVKEFLSEQLENIDLNYPNLVVAYEPIWAIGTKKSAS 170


>3OAJ-A nrPDB
          Length = 335

 Score = 31.7 bits (70), Expect = 0.53,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 45/151 (29%), Gaps = 22/151 (14%)

Query: 78  FTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETATELLHDSGVKVTTVVIDDDVA 137
           F   TPD   +      GG  +L    + T D+L      E +   G  V      D   
Sbjct: 142 FGEVTPDVAIKGF----GGATLLSEQPDKTADLLENIMGLERVGKEGDFVRYRSAGDIGN 197

Query: 138 VKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLDACAELGRKLNNQGHSIGIA-----LG 192
           V D   T   RG      +  +   A +  D LD      R + + G+ +          
Sbjct: 198 VIDLKLTPIGRGQMGAGTVHHIAWRANDDEDQLD----WQRYIASHGYGVTPVRDRNYFN 253

Query: 193 ACTVPAAGK---------PSFTLADNEMEFG 214
           A      G+         P F   + +   G
Sbjct: 254 AIYFREHGEILFEIATDPPGFAHDETQETMG 284


>2RFG-A nrPDB
          Length = 297

 Score = 31.7 bits (70), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 18  GLAKAHPSLTLHQDPVYVTRADAPVAGKVALLSGGGSGHEPMHCGYIGQGMLSGA----C 73
           G     P+LT  +    V        G+V +++G GS +      Y      +GA    C
Sbjct: 42  GTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLC 101

Query: 74  PGEIFTSPTPDKIFECAMQVDGGEGVLLIIKN 105
               +  P+ + +++    V     + +I+ N
Sbjct: 102 VAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYN 133


>4FHA-A nrPDB
          Length = 311

 Score = 31.3 bits (69), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 15  QLAGLAKAHPSLTLHQDPVYVTRADAPVAGKVALLSGGGSGHEPMHCGYIGQ-----GML 69
            LAG     P+LT  ++          V G+V L++G G+        ++ +     G  
Sbjct: 46  LLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFA 105

Query: 70  SGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDIL 111
           +G      +  P+ + +++    +     + +II N  G ++
Sbjct: 106 AGLAIVPYYNKPSQEGMYQHFKAIADASDLPIIIYNIPGRVV 147


>4KWB-A nrPDB
          Length = 273

 Score = 30.6 bits (67), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 16/117 (13%)

Query: 68  MLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETATELLHDSGVKV 127
           M S A  G  + S   DKIF     + G  GV++   NY+          +L    G+  
Sbjct: 91  MGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYS----------KLADKLGISF 140

Query: 128 TTVVI--DDDVAVKDSLYTAGRRGVANTVLIEKLVGA----AAERGDSLDACAELGR 178
            T+      D+       T   + +  +++     G     +  RG       ++  
Sbjct: 141 ETIKSGAHADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKKIAD 197


>3RST-A nrPDB
          Length = 240

 Score = 30.2 bits (66), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 16/117 (13%)

Query: 68  MLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETATELLHDSGVKV 127
           M S A  G  + S   DKIF     + G  GV++   NY+          +L    G+  
Sbjct: 86  MGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYS----------KLADKLGISF 135

Query: 128 TTVVI--DDDVAVKDSLYTAGRRGVANTVLIEKLVGA----AAERGDSLDACAELGR 178
            T+      D+       T   + +  +++     G     +  RG       ++  
Sbjct: 136 ETIKSGAHADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKKIAD 192


>5E59-A nrPDB
          Length = 260

 Score = 29.8 bits (65), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 143 YTAGRRGVANTVLIEKLVGAAAERGDSLDACAELGRKLNNQGHSI 187
           Y   R  +ANT L  +L+  AAE+G        L R   ++G ++
Sbjct: 99  YHFDRVKLANTFLAHQLIHYAAEQGQGDAMKERLLRAYMSEGQNV 143


>5C9E-A nrPDB
          Length = 282

 Score = 29.8 bits (65), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 1  MKKLINDVQDVL----DEQLAGLAKAHPSLTLHQDPVYVTRADAPVAGKVALLS 50
          ++KL+N++Q++L     +++  L+  +  L    DP      + P    VAL+S
Sbjct: 12 IEKLLNEMQELLTLTDSDKIKELSLKNSGLLEQHDPTLAMFGNMPKGEIVALIS 65


>4FC7-A nrPDB
          Length = 277

 Score = 29.4 bits (64), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 43 AGKVALLSGGGSGHEPMHCGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEG 98
            KVA ++GGGSG      G+    +        +  S +  ++   A ++ G  G
Sbjct: 26 RDKVAFITGGGSG-----IGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATG 76


>5A9Q-4 nrPDB
          Length = 925

 Score = 28.6 bits (62), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 22/51 (43%)

Query: 148 RGVANTVLIEKLVGAAAERGDSLDACAELGRKLNNQGHSIGIALGACTVPA 198
           R + + +L  + +G   +   S++      + L  + H+  IA   C +P 
Sbjct: 548 RFMTHLILFFRTLGLQTKEEVSIEVLKTYIQLLIREKHTNLIAFYTCHLPQ 598


>1O9G-A nrPDB
          Length = 250

 Score = 27.9 bits (60), Expect = 7.5,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 4/57 (7%)

Query: 205 TLADNEMEFGVGIHGEPGIDRRPFSSLDQTVDEMFDTLLVNGSYHRTLRFWDYQQGS 261
            +  +++  GV +H  PG    P     +   E+F   L        +  WD   GS
Sbjct: 10  RMDSSDLACGVVLHSAPGYPAFPV----RLATEIFQRALARLPGDGPVTLWDPCCGS 62


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.307    0.122    0.301 

Lambda     K      H
   0.267   0.0376    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,904,516
Number of Sequences: 36641
Number of extensions: 456291
Number of successful extensions: 1351
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1321
Number of HSP's gapped (non-prelim): 39
length of query: 356
length of database: 10,336,785
effective HSP length: 98
effective length of query: 258
effective length of database: 6,745,967
effective search space: 1740459486
effective search space used: 1740459486
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 59 (27.5 bits)