BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P76008
(304 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
5Z01-A nrPDB 624 e-179
4IIX-A nrPDB 98 4e-21
2AUM-A nrPDB 86 1e-17
4MJX-A nrPDB 84 7e-17
3G23-A nrPDB 60 1e-09
4GI8-A nrPDB 30 1.5
5F56-A nrPDB 30 1.7
5TF0-A nrPDB 29 2.9
5YGQ-A nrPDB 28 4.1
6O81-C nrPDB 28 4.7
4MLD-A nrPDB 28 6.1
4CBV-A nrPDB 28 6.2
3C2U-A nrPDB 27 9.8
>5Z01-A nrPDB
Length = 323
Score = 624 bits (1609), Expect = e-179, Method: Compositional matrix adjust.
Identities = 304/304 (100%), Positives = 304/304 (100%)
Query: 1 MSLFHLIAPSGYCIKQHAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSL 60
MSLFHLIAPSGYCIKQHAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSL
Sbjct: 20 MSLFHLIAPSGYCIKQHAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSL 79
Query: 61 ARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHGN 120
ARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHGN
Sbjct: 80 ARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHGN 139
Query: 121 VITFSGPMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGPTCRAEGTLWGGNLAML 180
VITFSGPMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGPTCRAEGTLWGGNLAML
Sbjct: 140 VITFSGPMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGPTCRAEGTLWGGNLAML 199
Query: 181 ISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPRQKAIILGSFSGSTPND 240
ISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPRQKAIILGSFSGSTPND
Sbjct: 200 ISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPRQKAIILGSFSGSTPND 259
Query: 241 YDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAHAILNNTREGTQLTISGHP 300
YDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAHAILNNTREGTQLTISGHP
Sbjct: 260 YDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAHAILNNTREGTQLTISGHP 319
Query: 301 VLKM 304
VLKM
Sbjct: 320 VLKM 323
>4IIX-A nrPDB
Length = 371
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 146/330 (44%), Gaps = 47/330 (14%)
Query: 1 MSLFHLIAPSGYCIKQHAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSL 60
+ F AP+ K RG++ L G ++ + ++ + +GT ER ++ N L
Sbjct: 46 IGFFSSSAPATVTAKNRF-FRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNEL 104
Query: 61 ARLTTPN-TIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHG 119
+ P+ T +++ GG ++ LL +D+ A++A +P +I G++D TA+ G+ A
Sbjct: 105 --VYNPDITCIMSTIGGDNSNSLLPFLDYDAIIA----NPKIIIGYADTTALLAGIYAKT 158
Query: 120 NVITFSGPMLVANFGA-DELNAFTEHHFWLALRNE-----TFTI--EWQGEG-------- 163
+ITF GP L+ +FG L T F L + T+T+ +W E
Sbjct: 159 GLITFYGPALIPSFGEHPPLVDITYESFIKILTRKQSGIYTYTLPEKWSDESINWNENKI 218
Query: 164 --------PTC------RAEGTLWGGNLAMLISLIGTPWMPKIENG-ILVLEDINEHPFR 208
C + EG + GGNL L + G+ WMP+I NG IL +ED +
Sbjct: 219 LRPKKLYKNNCAFYGSGKVEGRVIGGNLNTLTGIWGSEWMPEIRNGDILFIEDSRKSIAT 278
Query: 209 VERMLLQLYHAGILPRQKAIILGSFSGSTPNDYDAGYNLESVYAFLRSRLS---IPLITG 265
VER+ L + + AIILG +D + Y L L IP++ G
Sbjct: 279 VERLFSMLKLNRVFDKVSAIILGKHEL-----FDCAGSKRRPYEVLTEVLDGKQIPVLDG 333
Query: 266 LDFGHEQRTVTLPLGAHAILNNTREGTQLT 295
D H +TLPLG ++ + +T
Sbjct: 334 FDCSHTHPMLTLPLGVKLAIDFDNKNISIT 363
>2AUM-A nrPDB
Length = 317
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 134/296 (45%), Gaps = 23/296 (7%)
Query: 6 LIAPSGYCIKQ--HAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSLARL 63
LIAP+ + A LR ++ H +VE R AGT +RLEDL++
Sbjct: 30 LIAPASAIATEVLEATLRQLEVHGVDYHLGRHVEA---RYRYLAGTVEQRLEDLHNA--F 84
Query: 64 TTPN-TIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAI-----QCGLLA 117
P+ T V +RGGYG +LL +DW L A P + G +D + + + GL A
Sbjct: 85 DMPDITAVWCLRGGYGCGQLLPGLDWGRLEAA---SPRPLIGFADISVLLSAFHRHGLPA 141
Query: 118 -HGNVITFSG--PMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGPTCRAEGTLWG 174
HG V T G P+ + L + LA + ++ G G R EG L G
Sbjct: 142 IHGPVATGLGLSPLSAPREQQERLASLASVSRLLAGIDHELPVQHLG-GHKQRVEGALIG 200
Query: 175 GNLAMLISLIGT-PWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPRQKAIILGSF 233
GNL L + GT + ILVLED+ E +R+ER L QL + + AI LGSF
Sbjct: 201 GNLTALACMAGTLGGLHAPAGSILVLEDVGEPYYRLERSLWQLLESIDARQLGAICLGSF 260
Query: 234 SGSTPNDYDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAHAILNNTR 289
+ P + ++LE ++ + + +PL L GH + P G A+L R
Sbjct: 261 T-DCPRK-EVAHSLERIFGEYAAAIEVPLYHHLPSGHGAQNRAWPYGKTAVLEGNR 314
>4MJX-A nrPDB
Length = 336
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 129/302 (42%), Gaps = 42/302 (13%)
Query: 21 RGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSLARLTTPN-TIVLAVRGGYGA 79
R L G + + R +G+ ER ++LN+L R PN + +++ GG +
Sbjct: 35 RAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIR--NPNVSCIMSTIGGMNS 92
Query: 80 SRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHGNVITFSGPMLVANFGADELN 139
+ LL ID+ A Q++P ++ G++D TA+ G+ A + TF GP LV +FG E
Sbjct: 93 NSLLPYIDYDAF----QNNPKIMIGYADATALLLGIYAKTGIPTFYGPALVPSFGEFEPF 148
Query: 140 AFTEHHFWLA-----------LRNETF----TIEWQGEGP-------------TCRAEGT 171
+ ++L ++ F I W+ + +A G
Sbjct: 149 VDDTYKYFLETLLHDQALPYNIKQPLFWSDEFINWEEKTKEKELRPNNWISVTNGQATGR 208
Query: 172 LWGGNLAMLISLIGTPWMPKIENG-ILVLEDINEHPFRVERMLLQLYHAGILPRQKAIIL 230
+ GGNL + + G+P+MP I+ G IL +ED ++ +ER L G+ + IIL
Sbjct: 209 VIGGNLNTIQGIWGSPYMPCIQEGDILFIEDSSKDAATIERSFSFLKINGVFDKVSGIIL 268
Query: 231 GSFSGSTPNDYDAGYNLESVYAFLR--SRLSIPLITGLDFGHEQRTVTLPLGAHAILNNT 288
G D G N + L IPL+ D +T+P+G ++ T
Sbjct: 269 GKHEQFD----DCGTNRKPYEILLEVLQNQRIPLLADFDCCATHPMITMPIGVQVKMDAT 324
Query: 289 RE 290
+
Sbjct: 325 NK 326
>3G23-A nrPDB
Length = 274
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 95/239 (39%), Gaps = 19/239 (7%)
Query: 46 FAGTETERLEDLNSLARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGH 105
FAG++ RL A + VRGGYGA+R+ D + A L G+
Sbjct: 49 FAGSDALRLSAFLECANDDAFEAVWF-VRGGYGANRIAEDALARLGRAASAKQYL---GY 104
Query: 106 SDFTAIQCGLLAHGNVITFSGPMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGPT 165
SD + L AH + PM V + +A WLA E G PT
Sbjct: 105 SDAGTLLAALYAHRIGRSVHAPMPVDIRRPEGESAVRRTLGWLAGARE-------GLEPT 157
Query: 166 CRAEGTLWGGNLAMLISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQ----LYHAGI 221
A NL L L GT +P + ++++E++ EH + V+R+L L AGI
Sbjct: 158 LGAGAPAVAFNLMTLAMLCGTRLLPDLSGHVVMIEEVAEHHYAVDRLLFHVTSCLADAGI 217
Query: 222 LPRQKAIILGSFSGSTPNDYDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLG 280
+ LG S ND G ++E + R I + D GH+ +P G
Sbjct: 218 ----AGLRLGRVSDVPENDRPFGCSVEEMARHWCHRAGIAFLGTADIGHDVDNRIVPFG 272
>4GI8-A nrPDB
Length = 557
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 227 AIILGSFSGSTPNDYDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAH 282
A+ GS+ P++ D VYA+ RS+ + ++F E R+ TLP G H
Sbjct: 475 ALSTGSYRDIDPSNAD-------VYAYTRSQDGETYLVVVNFKAEPRSFTLPDGMH 523
>5F56-A nrPDB
Length = 705
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 85 DIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHGNVITFSGPMLVANFG 134
D+ QAL +DP L+ H D+ A G++A V TF+ P+ + G
Sbjct: 319 DMFAQALQLADPNDPALVLTHDDWHAGVMGIVASKLVETFNRPVYIVAQG 368
>5TF0-A nrPDB
Length = 751
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 252 AFLRSRLSIPLITGLDFGHEQRTV-TLPLG 280
A +SRL IPLI G+D H T+ +PLG
Sbjct: 75 AIEKSRLGIPLIFGMDVVHGYETIFPIPLG 104
>5YGQ-A nrPDB
Length = 342
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 195 GILVLEDINEHPFRVERMLLQLYHAGILPRQKAI 228
GI + DIN +P ++ +++L +H G L QKA+
Sbjct: 283 GIFAIGDINTYPGKL-KLILSGFHEGALMAQKAV 315
>6O81-C nrPDB
Length = 368
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 47 AGTETERLEDLNSLARLTTPNTIVLAVRG--GYGASRLLADIDWQALVARQQHDPLLICG 104
AG ET + D A ++ N +++ + GA R + AL A+ PL++C
Sbjct: 227 AGIETTVMTDAAIFAVMSRVNKVIIGTKTILANGALRAVTGTHTLALAAKHHSTPLIVCA 286
>4MLD-A nrPDB
Length = 143
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 195 GILVLEDINEHPFRVERMLLQLYHAGILP 223
+L+LED+ EH R+ER+L ++ +P
Sbjct: 2 KVLILEDVIEHQVRLERILDEISKESNIP 30
>4CBV-A nrPDB
Length = 256
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 195 GILVLEDINEHPFRVERMLLQLYHAGILP 223
+L+LED+ EH R+ER+L ++ +P
Sbjct: 2 KVLILEDVIEHQVRLERILDEISKESNIP 30
>3C2U-A nrPDB
Length = 538
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 94 RQQHDPLLICGHSDFTAIQCG--LLAHGNVITFSGPMLVANFGADELNAFTEHHFWLALR 151
++ H+PL CGH+ Q G LAH P A F + E E H + L
Sbjct: 237 KEVHNPLQKCGHASLVETQNGQWYLAHLTGRPLPAP---AGFPSRE----REQHAFCPLG 289
Query: 152 NETF--TIEWQGEGPTC 166
ET IEWQ P
Sbjct: 290 RETAIQKIEWQDGWPVV 306
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
5Z01-A nrPDB 412 e-116
4IIX-A nrPDB 324 4e-89
4MJX-A nrPDB 314 4e-86
2AUM-A nrPDB 282 2e-76
3G23-A nrPDB 245 2e-65
Sequences not found previously or not previously below threshold:
3R7L-A nrPDB 29 2.1
5ZME-A nrPDB 29 2.3
3TY6-A nrPDB 29 2.5
2WYI-A nrPDB 29 3.8
2Z3B-A nrPDB 28 4.5
2Z8X-A nrPDB 28 6.1
CONVERGED!
>5Z01-A nrPDB
Length = 323
Score = 412 bits (1059), Expect = e-116, Method: Composition-based stats.
Identities = 304/304 (100%), Positives = 304/304 (100%)
Query: 1 MSLFHLIAPSGYCIKQHAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSL 60
MSLFHLIAPSGYCIKQHAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSL
Sbjct: 20 MSLFHLIAPSGYCIKQHAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSL 79
Query: 61 ARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHGN 120
ARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHGN
Sbjct: 80 ARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHGN 139
Query: 121 VITFSGPMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGPTCRAEGTLWGGNLAML 180
VITFSGPMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGPTCRAEGTLWGGNLAML
Sbjct: 140 VITFSGPMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGPTCRAEGTLWGGNLAML 199
Query: 181 ISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPRQKAIILGSFSGSTPND 240
ISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPRQKAIILGSFSGSTPND
Sbjct: 200 ISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPRQKAIILGSFSGSTPND 259
Query: 241 YDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAHAILNNTREGTQLTISGHP 300
YDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAHAILNNTREGTQLTISGHP
Sbjct: 260 YDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAHAILNNTREGTQLTISGHP 319
Query: 301 VLKM 304
VLKM
Sbjct: 320 VLKM 323
>4IIX-A nrPDB
Length = 371
Score = 324 bits (829), Expect = 4e-89, Method: Composition-based stats.
Identities = 88/330 (26%), Positives = 142/330 (43%), Gaps = 47/330 (14%)
Query: 1 MSLFHLIAPSGYCIKQHAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSL 60
+ F AP+ K RG++ L G ++ + ++ + +GT ER ++ N L
Sbjct: 46 IGFFSSSAPATVTAKNRF-FRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNEL 104
Query: 61 ARLTTPN-TIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHG 119
+ P+ T +++ GG ++ LL +D+ A++A +P +I G++D TA+ G+ A
Sbjct: 105 --VYNPDITCIMSTIGGDNSNSLLPFLDYDAIIA----NPKIIIGYADTTALLAGIYAKT 158
Query: 120 NVITFSGPMLVANFGA-DELNAFTEHHFWLALRNE-------TFTIEWQGEGPT------ 165
+ITF GP L+ +FG L T F L + T +W E
Sbjct: 159 GLITFYGPALIPSFGEHPPLVDITYESFIKILTRKQSGIYTYTLPEKWSDESINWNENKI 218
Query: 166 ----------------CRAEGTLWGGNLAMLISLIGTPWMPKIENG-ILVLEDINEHPFR 208
+ EG + GGNL L + G+ WMP+I NG IL +ED +
Sbjct: 219 LRPKKLYKNNCAFYGSGKVEGRVIGGNLNTLTGIWGSEWMPEIRNGDILFIEDSRKSIAT 278
Query: 209 VERMLLQLYHAGILPRQKAIILGSFSGSTPNDYDAGYNLESVYAFLRSRLS---IPLITG 265
VER+ L + + AIILG +D + Y L L IP++ G
Sbjct: 279 VERLFSMLKLNRVFDKVSAIILGKHEL-----FDCAGSKRRPYEVLTEVLDGKQIPVLDG 333
Query: 266 LDFGHEQRTVTLPLGAHAILNNTREGTQLT 295
D H +TLPLG ++ + +T
Sbjct: 334 FDCSHTHPMLTLPLGVKLAIDFDNKNISIT 363
>4MJX-A nrPDB
Length = 336
Score = 314 bits (804), Expect = 4e-86, Method: Composition-based stats.
Identities = 79/326 (24%), Positives = 137/326 (42%), Gaps = 43/326 (13%)
Query: 1 MSLFHLIAPSGYCIKQHAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSL 60
+ ++ +P Y + R L G + + R +G+ ER ++LN+L
Sbjct: 16 IGIYSPSSPVTYTSPKRFE-RAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNAL 74
Query: 61 ARLTTPN-TIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHG 119
R PN + +++ GG ++ LL ID+ A Q++P ++ G++D TA+ G+ A
Sbjct: 75 IR--NPNVSCIMSTIGGMNSNSLLPYIDYDAF----QNNPKIMIGYADATALLLGIYAKT 128
Query: 120 NVITFSGPMLVANFGADELNAFTEHHFWLA-----------LRNETF----TIEWQGEGP 164
+ TF GP LV +FG E + ++L ++ F I W+ +
Sbjct: 129 GIPTFYGPALVPSFGEFEPFVDDTYKYFLETLLHDQALPYNIKQPLFWSDEFINWEEKTK 188
Query: 165 -------------TCRAEGTLWGGNLAMLISLIGTPWMPKIENG-ILVLEDINEHPFRVE 210
+A G + GGNL + + G+P+MP I+ G IL +ED ++ +E
Sbjct: 189 EKELRPNNWISVTNGQATGRVIGGNLNTIQGIWGSPYMPCIQEGDILFIEDSSKDAATIE 248
Query: 211 RMLLQLYHAGILPRQKAIILGSFSGSTPNDYDAGYNLESVYAFLR--SRLSIPLITGLDF 268
R L G+ + IILG D G N + L IPL+ D
Sbjct: 249 RSFSFLKINGVFDKVSGIILGKHEQFD----DCGTNRKPYEILLEVLQNQRIPLLADFDC 304
Query: 269 GHEQRTVTLPLGAHAILNNTREGTQL 294
+T+P+G ++ T + +
Sbjct: 305 CATHPMITMPIGVQVKMDATNKTIHI 330
>2AUM-A nrPDB
Length = 317
Score = 282 bits (720), Expect = 2e-76, Method: Composition-based stats.
Identities = 93/300 (31%), Positives = 133/300 (44%), Gaps = 23/300 (7%)
Query: 2 SLFHLIAPSGYCIKQ--HAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNS 59
LIAP+ + A LR ++ H +VE R AGT +RLEDL++
Sbjct: 26 GRVALIAPASAIATEVLEATLRQLEVHGVDYHLGRHVEA---RYRYLAGTVEQRLEDLHN 82
Query: 60 LARLTTPN-TIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQ-----C 113
P+ T V +RGGYG +LL +DW L A P + G +D + +
Sbjct: 83 A--FDMPDITAVWCLRGGYGCGQLLPGLDWGRLEAAS---PRPLIGFADISVLLSAFHRH 137
Query: 114 GLLA-HGNVITFSG--PMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGPTCRAEG 170
GL A HG V T G P+ + L + LA + ++ G G R EG
Sbjct: 138 GLPAIHGPVATGLGLSPLSAPREQQERLASLASVSRLLAGIDHELPVQHLG-GHKQRVEG 196
Query: 171 TLWGGNLAMLISLIGT-PWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPRQKAII 229
L GGNL L + GT + ILVLED+ E +R+ER L QL + + AI
Sbjct: 197 ALIGGNLTALACMAGTLGGLHAPAGSILVLEDVGEPYYRLERSLWQLLESIDARQLGAIC 256
Query: 230 LGSFSGSTPNDYDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAHAILNNTR 289
LGSF+ P + ++LE ++ + + +PL L GH + P G A+L R
Sbjct: 257 LGSFTD-CPRK-EVAHSLERIFGEYAAAIEVPLYHHLPSGHGAQNRAWPYGKTAVLEGNR 314
>3G23-A nrPDB
Length = 274
Score = 245 bits (624), Expect = 2e-65, Method: Composition-based stats.
Identities = 62/236 (26%), Positives = 92/236 (38%), Gaps = 11/236 (4%)
Query: 45 RFAGTETERLEDLNSLARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICG 104
FAG++ RL A + VRGGYGA+R+ D + A L G
Sbjct: 48 HFAGSDALRLSAFLECANDDAFEAVWF-VRGGYGANRIAEDALARLGRAASAKQYL---G 103
Query: 105 HSDFTAIQCGLLAHGNVITFSGPMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGP 164
+SD + L AH + PM V + +A WLA E G P
Sbjct: 104 YSDAGTLLAALYAHRIGRSVHAPMPVDIRRPEGESAVRRTLGWLAGARE-------GLEP 156
Query: 165 TCRAEGTLWGGNLAMLISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPR 224
T A NL L L GT +P + ++++E++ EH + V+R+L +
Sbjct: 157 TLGAGAPAVAFNLMTLAMLCGTRLLPDLSGHVVMIEEVAEHHYAVDRLLFHVTSCLADAG 216
Query: 225 QKAIILGSFSGSTPNDYDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLG 280
+ LG S ND G ++E + R I + D GH+ +P G
Sbjct: 217 IAGLRLGRVSDVPENDRPFGCSVEEMARHWCHRAGIAFLGTADIGHDVDNRIVPFG 272
>3R7L-A nrPDB
Length = 304
Score = 29.3 bits (64), Expect = 2.1, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 245 YNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAHAILNNTR-EGTQLTISG 298
++ + Y L S+++IP++ D + T +L +G ++I G
Sbjct: 100 HSEDEYYEELVSQVNIPILNAGDGCGQHPTQSLLDLMTIYEEFNTFKGLTVSIHG 154
>5ZME-A nrPDB
Length = 687
Score = 29.3 bits (64), Expect = 2.3, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 6/101 (5%)
Query: 183 LIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPRQKAIILGSFSGSTPNDYD 242
L G P+ L ++ ++ L L I + K + LG + P D
Sbjct: 424 LWGLQLDPEQAKAELRAVLADDGGKKLNETLDGLGLGVISDQLKDLQLGELLDTPPPGVD 483
Query: 243 AGYNLESVYAF-----LRSRLSIPLITGLDFGHEQRTVTLP 278
+ V F I + GH R ++LP
Sbjct: 484 EAIAIAKVVQFLKAPEYSHFKRI-VFDTAPTGHTLRLLSLP 523
>3TY6-A nrPDB
Length = 183
Score = 29.0 bits (63), Expect = 2.5, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 2/112 (1%)
Query: 118 HGNVITFSGPMLVANFGADELNA--FTEHHFWLALRNETFTIEWQGEGPTCRAEGTLWGG 175
G V+ + F E+ E++ L +W+G+ + E L
Sbjct: 49 QGKVLAGFAGSVADAFTLFEMFEGKLEEYNGNLQRAAVEMAKQWRGDKMLRQLEAMLIVM 108
Query: 176 NLAMLISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPRQKA 227
+ ++ + GT + + ++GIL + + R L Q + +Q A
Sbjct: 109 DKTTMLLVSGTGEVIEPDDGILAIGSGGNYALSAGRALKQYASEHLTAKQIA 160
>2WYI-A nrPDB
Length = 923
Score = 28.6 bits (62), Expect = 3.8, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 198 VLEDINEHPFRVERMLLQLYHAGILPRQKAIILGSFSGSTPNDYDAGYNLESVYAFLRSR 257
+L D N + R + ++ G P +A LG S S +++ ++ R++
Sbjct: 765 ILPDTNTIAITLLRSVGEMGDWGYFPTPEAQCLGKHSLS--YSFESITKQTQFASYWRAQ 822
Query: 258 LS-IPLITGLDFGHEQRTVTLPLGAHAILNNTREGTQLT 295
+P+IT HE ++ L T + LT
Sbjct: 823 EGQVPVITTQTNQHEGTLAA----EYSYLTGTNDQVALT 857
>2Z3B-A nrPDB
Length = 180
Score = 28.2 bits (61), Expect = 4.5, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 2/98 (2%)
Query: 118 HGNVITFSGPMLVANFGADE--LNAFTEHHFWLALRNETFTIEWQGEGPTCRAEGTLWGG 175
+G V+ + F E E++ L EW+ + + E L
Sbjct: 45 NGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVM 104
Query: 176 NLAMLISLIGTPWMPKIENGILVLEDINEHPFRVERML 213
N L+ + GT + + ++GIL + + R L
Sbjct: 105 NQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRAL 142
>2Z8X-A nrPDB
Length = 617
Score = 27.8 bits (60), Expect = 6.1, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 58 NSLARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLA 117
++ L P T+V A+ GG + ++ I W + D + G + TA Q G
Sbjct: 42 HNGFGLGLPATLVTALLGGTDSQGVIPGIPWNPDSEKLALDAVKKAGWTPITASQLGYDG 101
Query: 118 HGNVI-TFSG 126
+ TF G
Sbjct: 102 KTDARGTFFG 111
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.316 0.127 0.307
Lambda K H
0.267 0.0388 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,106,302
Number of Sequences: 36641
Number of extensions: 353948
Number of successful extensions: 924
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 36
length of query: 304
length of database: 10,336,785
effective HSP length: 97
effective length of query: 207
effective length of database: 6,782,608
effective search space: 1403999856
effective search space used: 1403999856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.4 bits)