BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P76008 (304 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 5Z01-A nrPDB 624 e-179 4IIX-A nrPDB 98 4e-21 2AUM-A nrPDB 86 1e-17 4MJX-A nrPDB 84 7e-17 3G23-A nrPDB 60 1e-09 4GI8-A nrPDB 30 1.5 5F56-A nrPDB 30 1.7 5TF0-A nrPDB 29 2.9 5YGQ-A nrPDB 28 4.1 6O81-C nrPDB 28 4.7 4MLD-A nrPDB 28 6.1 4CBV-A nrPDB 28 6.2 3C2U-A nrPDB 27 9.8 >5Z01-A nrPDB Length = 323 Score = 624 bits (1609), Expect = e-179, Method: Compositional matrix adjust. Identities = 304/304 (100%), Positives = 304/304 (100%) Query: 1 MSLFHLIAPSGYCIKQHAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSL 60 MSLFHLIAPSGYCIKQHAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSL Sbjct: 20 MSLFHLIAPSGYCIKQHAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSL 79 Query: 61 ARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHGN 120 ARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHGN Sbjct: 80 ARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHGN 139 Query: 121 VITFSGPMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGPTCRAEGTLWGGNLAML 180 VITFSGPMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGPTCRAEGTLWGGNLAML Sbjct: 140 VITFSGPMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGPTCRAEGTLWGGNLAML 199 Query: 181 ISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPRQKAIILGSFSGSTPND 240 ISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPRQKAIILGSFSGSTPND Sbjct: 200 ISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPRQKAIILGSFSGSTPND 259 Query: 241 YDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAHAILNNTREGTQLTISGHP 300 YDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAHAILNNTREGTQLTISGHP Sbjct: 260 YDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAHAILNNTREGTQLTISGHP 319 Query: 301 VLKM 304 VLKM Sbjct: 320 VLKM 323 >4IIX-A nrPDB Length = 371 Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 90/330 (27%), Positives = 146/330 (44%), Gaps = 47/330 (14%) Query: 1 MSLFHLIAPSGYCIKQHAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSL 60 + F AP+ K RG++ L G ++ + ++ + +GT ER ++ N L Sbjct: 46 IGFFSSSAPATVTAKNRF-FRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNEL 104 Query: 61 ARLTTPN-TIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHG 119 + P+ T +++ GG ++ LL +D+ A++A +P +I G++D TA+ G+ A Sbjct: 105 --VYNPDITCIMSTIGGDNSNSLLPFLDYDAIIA----NPKIIIGYADTTALLAGIYAKT 158 Query: 120 NVITFSGPMLVANFGA-DELNAFTEHHFWLALRNE-----TFTI--EWQGEG-------- 163 +ITF GP L+ +FG L T F L + T+T+ +W E Sbjct: 159 GLITFYGPALIPSFGEHPPLVDITYESFIKILTRKQSGIYTYTLPEKWSDESINWNENKI 218 Query: 164 --------PTC------RAEGTLWGGNLAMLISLIGTPWMPKIENG-ILVLEDINEHPFR 208 C + EG + GGNL L + G+ WMP+I NG IL +ED + Sbjct: 219 LRPKKLYKNNCAFYGSGKVEGRVIGGNLNTLTGIWGSEWMPEIRNGDILFIEDSRKSIAT 278 Query: 209 VERMLLQLYHAGILPRQKAIILGSFSGSTPNDYDAGYNLESVYAFLRSRLS---IPLITG 265 VER+ L + + AIILG +D + Y L L IP++ G Sbjct: 279 VERLFSMLKLNRVFDKVSAIILGKHEL-----FDCAGSKRRPYEVLTEVLDGKQIPVLDG 333 Query: 266 LDFGHEQRTVTLPLGAHAILNNTREGTQLT 295 D H +TLPLG ++ + +T Sbjct: 334 FDCSHTHPMLTLPLGVKLAIDFDNKNISIT 363 >2AUM-A nrPDB Length = 317 Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 93/296 (31%), Positives = 134/296 (45%), Gaps = 23/296 (7%) Query: 6 LIAPSGYCIKQ--HAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSLARL 63 LIAP+ + A LR ++ H +VE R AGT +RLEDL++ Sbjct: 30 LIAPASAIATEVLEATLRQLEVHGVDYHLGRHVEA---RYRYLAGTVEQRLEDLHNA--F 84 Query: 64 TTPN-TIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAI-----QCGLLA 117 P+ T V +RGGYG +LL +DW L A P + G +D + + + GL A Sbjct: 85 DMPDITAVWCLRGGYGCGQLLPGLDWGRLEAA---SPRPLIGFADISVLLSAFHRHGLPA 141 Query: 118 -HGNVITFSG--PMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGPTCRAEGTLWG 174 HG V T G P+ + L + LA + ++ G G R EG L G Sbjct: 142 IHGPVATGLGLSPLSAPREQQERLASLASVSRLLAGIDHELPVQHLG-GHKQRVEGALIG 200 Query: 175 GNLAMLISLIGT-PWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPRQKAIILGSF 233 GNL L + GT + ILVLED+ E +R+ER L QL + + AI LGSF Sbjct: 201 GNLTALACMAGTLGGLHAPAGSILVLEDVGEPYYRLERSLWQLLESIDARQLGAICLGSF 260 Query: 234 SGSTPNDYDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAHAILNNTR 289 + P + ++LE ++ + + +PL L GH + P G A+L R Sbjct: 261 T-DCPRK-EVAHSLERIFGEYAAAIEVPLYHHLPSGHGAQNRAWPYGKTAVLEGNR 314 >4MJX-A nrPDB Length = 336 Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 77/302 (25%), Positives = 129/302 (42%), Gaps = 42/302 (13%) Query: 21 RGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSLARLTTPN-TIVLAVRGGYGA 79 R L G + + R +G+ ER ++LN+L R PN + +++ GG + Sbjct: 35 RAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIR--NPNVSCIMSTIGGMNS 92 Query: 80 SRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHGNVITFSGPMLVANFGADELN 139 + LL ID+ A Q++P ++ G++D TA+ G+ A + TF GP LV +FG E Sbjct: 93 NSLLPYIDYDAF----QNNPKIMIGYADATALLLGIYAKTGIPTFYGPALVPSFGEFEPF 148 Query: 140 AFTEHHFWLA-----------LRNETF----TIEWQGEGP-------------TCRAEGT 171 + ++L ++ F I W+ + +A G Sbjct: 149 VDDTYKYFLETLLHDQALPYNIKQPLFWSDEFINWEEKTKEKELRPNNWISVTNGQATGR 208 Query: 172 LWGGNLAMLISLIGTPWMPKIENG-ILVLEDINEHPFRVERMLLQLYHAGILPRQKAIIL 230 + GGNL + + G+P+MP I+ G IL +ED ++ +ER L G+ + IIL Sbjct: 209 VIGGNLNTIQGIWGSPYMPCIQEGDILFIEDSSKDAATIERSFSFLKINGVFDKVSGIIL 268 Query: 231 GSFSGSTPNDYDAGYNLESVYAFLR--SRLSIPLITGLDFGHEQRTVTLPLGAHAILNNT 288 G D G N + L IPL+ D +T+P+G ++ T Sbjct: 269 GKHEQFD----DCGTNRKPYEILLEVLQNQRIPLLADFDCCATHPMITMPIGVQVKMDAT 324 Query: 289 RE 290 + Sbjct: 325 NK 326 >3G23-A nrPDB Length = 274 Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 95/239 (39%), Gaps = 19/239 (7%) Query: 46 FAGTETERLEDLNSLARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGH 105 FAG++ RL A + VRGGYGA+R+ D + A L G+ Sbjct: 49 FAGSDALRLSAFLECANDDAFEAVWF-VRGGYGANRIAEDALARLGRAASAKQYL---GY 104 Query: 106 SDFTAIQCGLLAHGNVITFSGPMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGPT 165 SD + L AH + PM V + +A WLA E G PT Sbjct: 105 SDAGTLLAALYAHRIGRSVHAPMPVDIRRPEGESAVRRTLGWLAGARE-------GLEPT 157 Query: 166 CRAEGTLWGGNLAMLISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQ----LYHAGI 221 A NL L L GT +P + ++++E++ EH + V+R+L L AGI Sbjct: 158 LGAGAPAVAFNLMTLAMLCGTRLLPDLSGHVVMIEEVAEHHYAVDRLLFHVTSCLADAGI 217 Query: 222 LPRQKAIILGSFSGSTPNDYDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLG 280 + LG S ND G ++E + R I + D GH+ +P G Sbjct: 218 ----AGLRLGRVSDVPENDRPFGCSVEEMARHWCHRAGIAFLGTADIGHDVDNRIVPFG 272 >4GI8-A nrPDB Length = 557 Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 7/56 (12%) Query: 227 AIILGSFSGSTPNDYDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAH 282 A+ GS+ P++ D VYA+ RS+ + ++F E R+ TLP G H Sbjct: 475 ALSTGSYRDIDPSNAD-------VYAYTRSQDGETYLVVVNFKAEPRSFTLPDGMH 523 >5F56-A nrPDB Length = 705 Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 26/50 (52%) Query: 85 DIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHGNVITFSGPMLVANFG 134 D+ QAL +DP L+ H D+ A G++A V TF+ P+ + G Sbjct: 319 DMFAQALQLADPNDPALVLTHDDWHAGVMGIVASKLVETFNRPVYIVAQG 368 >5TF0-A nrPDB Length = 751 Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust. Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Query: 252 AFLRSRLSIPLITGLDFGHEQRTV-TLPLG 280 A +SRL IPLI G+D H T+ +PLG Sbjct: 75 AIEKSRLGIPLIFGMDVVHGYETIFPIPLG 104 >5YGQ-A nrPDB Length = 342 Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust. Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Query: 195 GILVLEDINEHPFRVERMLLQLYHAGILPRQKAI 228 GI + DIN +P ++ +++L +H G L QKA+ Sbjct: 283 GIFAIGDINTYPGKL-KLILSGFHEGALMAQKAV 315 >6O81-C nrPDB Length = 368 Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 47 AGTETERLEDLNSLARLTTPNTIVLAVRG--GYGASRLLADIDWQALVARQQHDPLLICG 104 AG ET + D A ++ N +++ + GA R + AL A+ PL++C Sbjct: 227 AGIETTVMTDAAIFAVMSRVNKVIIGTKTILANGALRAVTGTHTLALAAKHHSTPLIVCA 286 >4MLD-A nrPDB Length = 143 Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 19/29 (65%) Query: 195 GILVLEDINEHPFRVERMLLQLYHAGILP 223 +L+LED+ EH R+ER+L ++ +P Sbjct: 2 KVLILEDVIEHQVRLERILDEISKESNIP 30 >4CBV-A nrPDB Length = 256 Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 19/29 (65%) Query: 195 GILVLEDINEHPFRVERMLLQLYHAGILP 223 +L+LED+ EH R+ER+L ++ +P Sbjct: 2 KVLILEDVIEHQVRLERILDEISKESNIP 30 >3C2U-A nrPDB Length = 538 Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 11/77 (14%) Query: 94 RQQHDPLLICGHSDFTAIQCG--LLAHGNVITFSGPMLVANFGADELNAFTEHHFWLALR 151 ++ H+PL CGH+ Q G LAH P A F + E E H + L Sbjct: 237 KEVHNPLQKCGHASLVETQNGQWYLAHLTGRPLPAP---AGFPSRE----REQHAFCPLG 289 Query: 152 NETF--TIEWQGEGPTC 166 ET IEWQ P Sbjct: 290 RETAIQKIEWQDGWPVV 306 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 5Z01-A nrPDB 412 e-116 4IIX-A nrPDB 324 4e-89 4MJX-A nrPDB 314 4e-86 2AUM-A nrPDB 282 2e-76 3G23-A nrPDB 245 2e-65 Sequences not found previously or not previously below threshold: 3R7L-A nrPDB 29 2.1 5ZME-A nrPDB 29 2.3 3TY6-A nrPDB 29 2.5 2WYI-A nrPDB 29 3.8 2Z3B-A nrPDB 28 4.5 2Z8X-A nrPDB 28 6.1 CONVERGED! >5Z01-A nrPDB Length = 323 Score = 412 bits (1059), Expect = e-116, Method: Composition-based stats. Identities = 304/304 (100%), Positives = 304/304 (100%) Query: 1 MSLFHLIAPSGYCIKQHAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSL 60 MSLFHLIAPSGYCIKQHAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSL Sbjct: 20 MSLFHLIAPSGYCIKQHAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSL 79 Query: 61 ARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHGN 120 ARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHGN Sbjct: 80 ARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHGN 139 Query: 121 VITFSGPMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGPTCRAEGTLWGGNLAML 180 VITFSGPMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGPTCRAEGTLWGGNLAML Sbjct: 140 VITFSGPMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGPTCRAEGTLWGGNLAML 199 Query: 181 ISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPRQKAIILGSFSGSTPND 240 ISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPRQKAIILGSFSGSTPND Sbjct: 200 ISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPRQKAIILGSFSGSTPND 259 Query: 241 YDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAHAILNNTREGTQLTISGHP 300 YDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAHAILNNTREGTQLTISGHP Sbjct: 260 YDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAHAILNNTREGTQLTISGHP 319 Query: 301 VLKM 304 VLKM Sbjct: 320 VLKM 323 >4IIX-A nrPDB Length = 371 Score = 324 bits (829), Expect = 4e-89, Method: Composition-based stats. Identities = 88/330 (26%), Positives = 142/330 (43%), Gaps = 47/330 (14%) Query: 1 MSLFHLIAPSGYCIKQHAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSL 60 + F AP+ K RG++ L G ++ + ++ + +GT ER ++ N L Sbjct: 46 IGFFSSSAPATVTAKNRF-FRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNEL 104 Query: 61 ARLTTPN-TIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHG 119 + P+ T +++ GG ++ LL +D+ A++A +P +I G++D TA+ G+ A Sbjct: 105 --VYNPDITCIMSTIGGDNSNSLLPFLDYDAIIA----NPKIIIGYADTTALLAGIYAKT 158 Query: 120 NVITFSGPMLVANFGA-DELNAFTEHHFWLALRNE-------TFTIEWQGEGPT------ 165 +ITF GP L+ +FG L T F L + T +W E Sbjct: 159 GLITFYGPALIPSFGEHPPLVDITYESFIKILTRKQSGIYTYTLPEKWSDESINWNENKI 218 Query: 166 ----------------CRAEGTLWGGNLAMLISLIGTPWMPKIENG-ILVLEDINEHPFR 208 + EG + GGNL L + G+ WMP+I NG IL +ED + Sbjct: 219 LRPKKLYKNNCAFYGSGKVEGRVIGGNLNTLTGIWGSEWMPEIRNGDILFIEDSRKSIAT 278 Query: 209 VERMLLQLYHAGILPRQKAIILGSFSGSTPNDYDAGYNLESVYAFLRSRLS---IPLITG 265 VER+ L + + AIILG +D + Y L L IP++ G Sbjct: 279 VERLFSMLKLNRVFDKVSAIILGKHEL-----FDCAGSKRRPYEVLTEVLDGKQIPVLDG 333 Query: 266 LDFGHEQRTVTLPLGAHAILNNTREGTQLT 295 D H +TLPLG ++ + +T Sbjct: 334 FDCSHTHPMLTLPLGVKLAIDFDNKNISIT 363 >4MJX-A nrPDB Length = 336 Score = 314 bits (804), Expect = 4e-86, Method: Composition-based stats. Identities = 79/326 (24%), Positives = 137/326 (42%), Gaps = 43/326 (13%) Query: 1 MSLFHLIAPSGYCIKQHAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSL 60 + ++ +P Y + R L G + + R +G+ ER ++LN+L Sbjct: 16 IGIYSPSSPVTYTSPKRFE-RAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNAL 74 Query: 61 ARLTTPN-TIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHG 119 R PN + +++ GG ++ LL ID+ A Q++P ++ G++D TA+ G+ A Sbjct: 75 IR--NPNVSCIMSTIGGMNSNSLLPYIDYDAF----QNNPKIMIGYADATALLLGIYAKT 128 Query: 120 NVITFSGPMLVANFGADELNAFTEHHFWLA-----------LRNETF----TIEWQGEGP 164 + TF GP LV +FG E + ++L ++ F I W+ + Sbjct: 129 GIPTFYGPALVPSFGEFEPFVDDTYKYFLETLLHDQALPYNIKQPLFWSDEFINWEEKTK 188 Query: 165 -------------TCRAEGTLWGGNLAMLISLIGTPWMPKIENG-ILVLEDINEHPFRVE 210 +A G + GGNL + + G+P+MP I+ G IL +ED ++ +E Sbjct: 189 EKELRPNNWISVTNGQATGRVIGGNLNTIQGIWGSPYMPCIQEGDILFIEDSSKDAATIE 248 Query: 211 RMLLQLYHAGILPRQKAIILGSFSGSTPNDYDAGYNLESVYAFLR--SRLSIPLITGLDF 268 R L G+ + IILG D G N + L IPL+ D Sbjct: 249 RSFSFLKINGVFDKVSGIILGKHEQFD----DCGTNRKPYEILLEVLQNQRIPLLADFDC 304 Query: 269 GHEQRTVTLPLGAHAILNNTREGTQL 294 +T+P+G ++ T + + Sbjct: 305 CATHPMITMPIGVQVKMDATNKTIHI 330 >2AUM-A nrPDB Length = 317 Score = 282 bits (720), Expect = 2e-76, Method: Composition-based stats. Identities = 93/300 (31%), Positives = 133/300 (44%), Gaps = 23/300 (7%) Query: 2 SLFHLIAPSGYCIKQ--HAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNS 59 LIAP+ + A LR ++ H +VE R AGT +RLEDL++ Sbjct: 26 GRVALIAPASAIATEVLEATLRQLEVHGVDYHLGRHVEA---RYRYLAGTVEQRLEDLHN 82 Query: 60 LARLTTPN-TIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQ-----C 113 P+ T V +RGGYG +LL +DW L A P + G +D + + Sbjct: 83 A--FDMPDITAVWCLRGGYGCGQLLPGLDWGRLEAAS---PRPLIGFADISVLLSAFHRH 137 Query: 114 GLLA-HGNVITFSG--PMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGPTCRAEG 170 GL A HG V T G P+ + L + LA + ++ G G R EG Sbjct: 138 GLPAIHGPVATGLGLSPLSAPREQQERLASLASVSRLLAGIDHELPVQHLG-GHKQRVEG 196 Query: 171 TLWGGNLAMLISLIGT-PWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPRQKAII 229 L GGNL L + GT + ILVLED+ E +R+ER L QL + + AI Sbjct: 197 ALIGGNLTALACMAGTLGGLHAPAGSILVLEDVGEPYYRLERSLWQLLESIDARQLGAIC 256 Query: 230 LGSFSGSTPNDYDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAHAILNNTR 289 LGSF+ P + ++LE ++ + + +PL L GH + P G A+L R Sbjct: 257 LGSFTD-CPRK-EVAHSLERIFGEYAAAIEVPLYHHLPSGHGAQNRAWPYGKTAVLEGNR 314 >3G23-A nrPDB Length = 274 Score = 245 bits (624), Expect = 2e-65, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 92/236 (38%), Gaps = 11/236 (4%) Query: 45 RFAGTETERLEDLNSLARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICG 104 FAG++ RL A + VRGGYGA+R+ D + A L G Sbjct: 48 HFAGSDALRLSAFLECANDDAFEAVWF-VRGGYGANRIAEDALARLGRAASAKQYL---G 103 Query: 105 HSDFTAIQCGLLAHGNVITFSGPMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGP 164 +SD + L AH + PM V + +A WLA E G P Sbjct: 104 YSDAGTLLAALYAHRIGRSVHAPMPVDIRRPEGESAVRRTLGWLAGARE-------GLEP 156 Query: 165 TCRAEGTLWGGNLAMLISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPR 224 T A NL L L GT +P + ++++E++ EH + V+R+L + Sbjct: 157 TLGAGAPAVAFNLMTLAMLCGTRLLPDLSGHVVMIEEVAEHHYAVDRLLFHVTSCLADAG 216 Query: 225 QKAIILGSFSGSTPNDYDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLG 280 + LG S ND G ++E + R I + D GH+ +P G Sbjct: 217 IAGLRLGRVSDVPENDRPFGCSVEEMARHWCHRAGIAFLGTADIGHDVDNRIVPFG 272 >3R7L-A nrPDB Length = 304 Score = 29.3 bits (64), Expect = 2.1, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 245 YNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAHAILNNTR-EGTQLTISG 298 ++ + Y L S+++IP++ D + T +L +G ++I G Sbjct: 100 HSEDEYYEELVSQVNIPILNAGDGCGQHPTQSLLDLMTIYEEFNTFKGLTVSIHG 154 >5ZME-A nrPDB Length = 687 Score = 29.3 bits (64), Expect = 2.3, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 6/101 (5%) Query: 183 LIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPRQKAIILGSFSGSTPNDYD 242 L G P+ L ++ ++ L L I + K + LG + P D Sbjct: 424 LWGLQLDPEQAKAELRAVLADDGGKKLNETLDGLGLGVISDQLKDLQLGELLDTPPPGVD 483 Query: 243 AGYNLESVYAF-----LRSRLSIPLITGLDFGHEQRTVTLP 278 + V F I + GH R ++LP Sbjct: 484 EAIAIAKVVQFLKAPEYSHFKRI-VFDTAPTGHTLRLLSLP 523 >3TY6-A nrPDB Length = 183 Score = 29.0 bits (63), Expect = 2.5, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 2/112 (1%) Query: 118 HGNVITFSGPMLVANFGADELNA--FTEHHFWLALRNETFTIEWQGEGPTCRAEGTLWGG 175 G V+ + F E+ E++ L +W+G+ + E L Sbjct: 49 QGKVLAGFAGSVADAFTLFEMFEGKLEEYNGNLQRAAVEMAKQWRGDKMLRQLEAMLIVM 108 Query: 176 NLAMLISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPRQKA 227 + ++ + GT + + ++GIL + + R L Q + +Q A Sbjct: 109 DKTTMLLVSGTGEVIEPDDGILAIGSGGNYALSAGRALKQYASEHLTAKQIA 160 >2WYI-A nrPDB Length = 923 Score = 28.6 bits (62), Expect = 3.8, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 7/99 (7%) Query: 198 VLEDINEHPFRVERMLLQLYHAGILPRQKAIILGSFSGSTPNDYDAGYNLESVYAFLRSR 257 +L D N + R + ++ G P +A LG S S +++ ++ R++ Sbjct: 765 ILPDTNTIAITLLRSVGEMGDWGYFPTPEAQCLGKHSLS--YSFESITKQTQFASYWRAQ 822 Query: 258 LS-IPLITGLDFGHEQRTVTLPLGAHAILNNTREGTQLT 295 +P+IT HE ++ L T + LT Sbjct: 823 EGQVPVITTQTNQHEGTLAA----EYSYLTGTNDQVALT 857 >2Z3B-A nrPDB Length = 180 Score = 28.2 bits (61), Expect = 4.5, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 2/98 (2%) Query: 118 HGNVITFSGPMLVANFGADE--LNAFTEHHFWLALRNETFTIEWQGEGPTCRAEGTLWGG 175 +G V+ + F E E++ L EW+ + + E L Sbjct: 45 NGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVM 104 Query: 176 NLAMLISLIGTPWMPKIENGILVLEDINEHPFRVERML 213 N L+ + GT + + ++GIL + + R L Sbjct: 105 NQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRAL 142 >2Z8X-A nrPDB Length = 617 Score = 27.8 bits (60), Expect = 6.1, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Query: 58 NSLARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLA 117 ++ L P T+V A+ GG + ++ I W + D + G + TA Q G Sbjct: 42 HNGFGLGLPATLVTALLGGTDSQGVIPGIPWNPDSEKLALDAVKKAGWTPITASQLGYDG 101 Query: 118 HGNVI-TFSG 126 + TF G Sbjct: 102 KTDARGTFFG 111 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.316 0.127 0.307 Lambda K H 0.267 0.0388 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,106,302 Number of Sequences: 36641 Number of extensions: 353948 Number of successful extensions: 924 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 870 Number of HSP's gapped (non-prelim): 36 length of query: 304 length of database: 10,336,785 effective HSP length: 97 effective length of query: 207 effective length of database: 6,782,608 effective search space: 1403999856 effective search space used: 1403999856 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (27.4 bits)