BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P75830 (371 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 5NIL-D nrPDB 733 0.0 4DK0-A nrPDB 206 2e-53 4DK1-A nrPDB 186 1e-47 3LNN-A nrPDB 74 1e-13 4L8J-A nrPDB 63 2e-10 5O66-D nrPDB 42 4e-04 2F1M-A nrPDB 42 5e-04 6IOK-I nrPDB 42 6e-04 4TKO-B nrPDB 38 0.006 1KFU-L nrPDB 32 0.60 5YFP-F nrPDB 30 2.0 4KKT-A nrPDB 30 2.1 2VDI-A nrPDB 29 2.6 6FKF-e nrPDB 29 3.9 2C3X-A nrPDB 29 4.0 5U25-A nrPDB 28 4.5 >5NIL-D nrPDB Length = 371 Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/371 (99%), Positives = 369/371 (99%) Query: 1 MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALR 60 MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALR Sbjct: 1 MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALR 60 Query: 61 KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEA 120 KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEA Sbjct: 61 KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEA 120 Query: 121 ELKLARVTYSRQQRLAQTKAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTN 180 ELKLARVTYSRQQRLAQT+AVSQQDLD AATEMAVKQAQIGTIDAQIKRNQASLDTAKTN Sbjct: 121 ELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTN 180 Query: 181 LDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHLKPG 240 LDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHLKPG Sbjct: 181 LDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHLKPG 240 Query: 241 QKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQL 300 QKAWFTVLGD LTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQL Sbjct: 241 QKAWFTVLGDQLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQL 300 Query: 301 TDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEV 360 TDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEV Sbjct: 301 TDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEV 360 Query: 361 VIGEAKPGAAQ 371 VIGEAKPGAAQ Sbjct: 361 VIGEAKPGAAQ 371 >4DK0-A nrPDB Length = 369 Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 124/354 (35%), Positives = 193/354 (54%), Gaps = 22/354 (6%) Query: 35 TYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 TY T V+ G+++++V+ATG ++++ VDVGAQVSG++ L V +G +VKK LL ID Sbjct: 6 TYLTEEVKRGNIEKNVVATGSIESINTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDS 65 Query: 95 EQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAVSQQDLDTAATEMA 154 N + +A L +AQ + +A Y R +L KA S L+TA + Sbjct: 66 TTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLN 125 Query: 155 VKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNI 214 +A++ + IK+ + ++TA+TNL YT+I +P+ G V +GQTV + Q P I Sbjct: 126 NAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTPTI 185 Query: 215 LTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVND--- 271 + +AD+S M +K ++SE D+ +K GQ FT+L D T Y +I V P ++D Sbjct: 186 IKVADLSKMRIKPEISEGDITKVKAGQDVTFTILSDNKTVYHAKIDSVDPATTTISDNSS 245 Query: 272 -----------------AIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSAL 314 A++YYA V NP +LR+ MT + +I++ DV+NVL IP A+ Sbjct: 246 SNSSSSGSSSSSGSSSSAVYYYANIIVENPEHVLRIGMTTENNIKIADVQNVLFIPNLAV 305 Query: 315 GDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPG 368 ++Y V +L T+ERE+ IG +ND E+ GL G++VVI + G Sbjct: 306 QKQ--QDKYVVNVLNGNTTQEREIEIGVQNDFQTEVKSGLTEGEKVVISQVAAG 357 >4DK1-A nrPDB Length = 341 Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 119/354 (33%), Positives = 185/354 (52%), Gaps = 50/354 (14%) Query: 35 TYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 TY T V+ G+++++V+ATG ++++ VDVGAQVSG++ L V +G +VKK LL IDP Sbjct: 6 TYLTEEVKRGNIEKNVVATGSIESINTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDP 65 Query: 95 EQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAVSQQDLDTAATEMA 154 E + +A L + Q Q R + L +AVS+Q Sbjct: 66 ATYEADYQSAQANLASTQEQAQ--------------RYKLLVADQAVSKQ---------- 101 Query: 155 VKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNI 214 Q +A +++A+++ A+ NL YT+I +P+ G V +GQTV + Q P I Sbjct: 102 ----QYADANAAYLQSKAAVEQARINLRYTKITSPIDGTVISTPVSEGQTVNSNQTTPTI 157 Query: 215 LTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVND--- 271 + +AD+S M +K ++SE D+ +K GQ FT+L D T Y +I V P ++D Sbjct: 158 IKVADLSKMRIKPEISEGDITKVKAGQDVTFTILSDNKTVYHAKIDSVDPATTTISDNSS 217 Query: 272 -----------------AIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSAL 314 A++YYA V NP +LR+ MT + +I++ DV+NVL IP A+ Sbjct: 218 SNSSSSGSSSSSGSSSSAVYYYANIIVENPEHVLRIGMTTENNIKIADVQNVLFIPNLAV 277 Query: 315 GDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPG 368 ++Y V +L T+ERE+ IG +ND E+ GL G++VVI + G Sbjct: 278 QKQ--QDKYVVNVLNGNTTQEREIEIGVQNDFQTEVKSGLTEGEKVVISQVAAG 329 >3LNN-A nrPDB Length = 359 Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 88/350 (25%), Positives = 153/350 (43%), Gaps = 37/350 (10%) Query: 28 ILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVD------VGAQVSGQLKTLSVAIGD 81 ++ A P +TL V P +++V A L A+ + D V ++G++ +L+ +GD Sbjct: 19 VVPAESPLRRTLAVAPA-TRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGD 77 Query: 82 KVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAV 141 +VK +L ID A L + + +A A + +AR RQ+ L +++ Sbjct: 78 EVKAGDVLFTID-----------SADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIA 126 Query: 142 SQQDLDTAATEMAVKQAQIGTIDAQIKR--NQASLDTAKTNLDYTRIVAPMAGEVTQITT 199 +++D + A ++ ++ DA++ + + + +P+ G V + Sbjct: 127 AKRDFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNA 186 Query: 200 LQGQTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHLKPGQKAW--FTVLGDP---LTR 254 G +++T+AD+S + V A E D+ H+ GQ A F DP R Sbjct: 187 ATG--AYWNDTTASLMTVADLSHVFVTANAQEKDLGHVYVGQSATVKFDAYDDPQPGKVR 244 Query: 255 YEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSAL 314 Y GQI D KV R NP+G LR M AQ L+ + +P+SA+ Sbjct: 245 YVGQILDADTRTTKV--------RMVFDNPDGRLRPGMFAQATF-LSQPHEGIVVPMSAI 295 Query: 315 GDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGE 364 R V++ + R + +GA+ +E+ GL AGD VV+ E Sbjct: 296 VQSGFYTRAFVEVA-PWQFEPRVIKLGAQIGDRMEVKSGLSAGDRVVVKE 344 >4L8J-A nrPDB Length = 328 Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 85/345 (24%), Positives = 155/345 (44%), Gaps = 58/345 (16%) Query: 38 TLIVRPGDL----QQSVL---ATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLG 90 T +VRP QSV+ +G ++A+ V + +VSGQ+ L V G +VKK QL+ Sbjct: 4 TALVRPVKTATVSSQSVILKDFSGMVEAVEYVKLAFRVSGQIINLPVVEGQRVKKGQLIA 63 Query: 91 VIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAVSQQDLDTAA 150 IDP + L+ +A E A+V R +RL +A+S Q+ + + Sbjct: 64 AIDPRD------------ISLQYAADKAAYETAAAQV--ERNKRLLGRQAISLQEYEISV 109 Query: 151 TEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQ 210 A ++ +++ + + N+ T+++AP G + Q V + + Sbjct: 110 --------------ANYQKAKSAYELSTNNMRDTKLLAPFDGSIETRLVENYQRVNSGE- 154 Query: 211 APNILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDPL--TRYEGQIKDVL----- 263 I+ L + + +K V + D ++L + A F V D T + ++++ L Sbjct: 155 --GIVRLVNTRKLRIKFTVPD-DYLYLLRAKDATFKVEFDTYKGTVFNARLEEYLDISTD 211 Query: 264 ----PTPEKVNDAIFYYARFEV-PNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSA-LGDP 317 P ++DA F ++V P +RL I+ + ++ +PLSA GD Sbjct: 212 GTGIPVTIIIDDAAFDRTIYDVKPGFTCNIRLASDIAPFIE----EKLMNVPLSAVFGDS 267 Query: 318 VGDNRYKVKLLRNGETREREVTIGA-RNDTDVEIVKGLEAGDEVV 361 N Y V ++++ + REVT+ + + ++ I KGL+ G+ VV Sbjct: 268 ENKNTY-VWIVKDNKVNRREVTVYSPTGEANLLISKGLKPGETVV 311 >5O66-D nrPDB Length = 373 Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 82/358 (22%), Positives = 157/358 (43%), Gaps = 46/358 (12%) Query: 33 VPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVI 92 +P + V+ LQ + G+ A R +V QVSG + + G ++ L I Sbjct: 13 MPAVGVVTVKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQI 72 Query: 93 DPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAVSQQDLDTAATE 152 DP +AT + +A+A +A++T +R Q+L T+ +S+Q+ D A Sbjct: 73 DP-------ATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALA- 124 Query: 153 MAVKQAQIGTIDAQ-----IKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIA 207 DAQ + +A+++TA+ NL YT++ +P++G + + +G ++ Sbjct: 125 -----------DAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEG-ALVQ 172 Query: 208 AQQAPNILTLADMSAMLVKAQVSEADVIHLK----------PGQKAWFTVLGDPLTRY-- 255 QA + T+ + + V S D++ LK KA +++ ++ Sbjct: 173 NGQATALATVQQLDPIYVDVTQSSNDMMRLKQELANGTLKQENGKAKVSLITSDGIKFPQ 232 Query: 256 EGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALG 315 +G ++ T ++ +I A F PNP+ + M + ++ N + +P + Sbjct: 233 DGTLEFSDVTVDQTTGSITLRAIF--PNPDHTMMPGMFVRARLEEGLNPNAILVPQQGVT 290 Query: 316 -DPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIV-KGLEAGDEVVIG---EAKPG 368 P GD V ++ + E + ++ D +V +GL+AGD VVI + +PG Sbjct: 291 RTPRGD--ATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPG 346 >2F1M-A nrPDB Length = 277 Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 95/204 (46%), Gaps = 25/204 (12%) Query: 40 IVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAEN 99 +V+ LQ + G+ A R +V QVSG + + G ++ L IDP Sbjct: 1 MVKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDP----- 55 Query: 100 QIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAVSQQDLDTAATEMAVKQAQ 159 +AT + +A+A +A++T +R Q+L T+ +S+Q+ D A Sbjct: 56 --ATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALA-------- 105 Query: 160 IGTIDAQ-----IKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNI 214 DAQ + +A+++TA+ NL YT++ +P++G + + +G ++ QA + Sbjct: 106 ----DAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEG-ALVQNGQATAL 160 Query: 215 LTLADMSAMLVKAQVSEADVIHLK 238 T+ + + V S D++ LK Sbjct: 161 ATVQQLDPIYVDVTQSSNDMMRLK 184 >6IOK-I nrPDB Length = 362 Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 28/156 (17%) Query: 54 GKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRA 113 G+ +A R +V QV+G + G VK Q L IDP E + +A L + Sbjct: 35 GRTNAFRIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQE 94 Query: 114 QRQQAEAELKLARVTYSRQQRLAQTKAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQAS 173 Q Q R + L +AVS+Q Q +A +++A+ Sbjct: 95 QAQ--------------RYKLLVADQAVSKQ--------------QYADANAAYLQSKAA 126 Query: 174 LDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQ 209 ++ A+ NL YT++++P++G + + +G V Q Sbjct: 127 VEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQ 162 >4TKO-B nrPDB Length = 358 Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 3/108 (2%) Query: 157 QAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILT 216 + ++ +++ +IK + + TA+ + T ++AP G V + +G V A Q A Sbjct: 193 KKELSSLEEEIKSLKERIKTAEQKIKDTVLIAPFDGVVAKRFISRGDVVRAGQPA---FA 249 Query: 217 LADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLP 264 L + + V+ + E + +K G KA+ + P +EG ++++ P Sbjct: 250 LVNPESFYVEVLLEETKLKGVKVGNKAYVRLDAYPDILFEGVVEEISP 297 Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust. Identities = 47/242 (19%), Positives = 101/242 (41%), Gaps = 57/242 (23%) Query: 64 VGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVE---ATLME---------- 110 + +VSG++ + +GD VK+ + L +DP E + + +E + L+E Sbjct: 23 LSFRVSGKVIEVYKDLGDYVKRGEALAKLDPTYYELEKRTLEKKMSALLEKKKALEIKIQ 82 Query: 111 --------------------------LRAQRQQAEAELKLARVTYSRQQRLAQTKAVSQQ 144 LR + Q E ++KL ++ + R + L Q + ++ Sbjct: 83 KLEKGLHISLSAKKLKVESLKKKREALREKLLQVEEKIKLVKLDWERYKSLFQKGLIPRR 142 Query: 145 DLDTAATEMAV-------KQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVT-- 195 + T + V + I I+ +IKR + ++ A+ + + + E++ Sbjct: 143 KFEEVDTNLKVLLHEREYLEKSIQEINTEIKRAKKGIENARNEF---KTIEELKKELSSL 199 Query: 196 --QITTLQGQTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDPLT 253 +I +L+ + A Q+ + + +A ++ K +S DV+ + GQ A+ L +P + Sbjct: 200 EEEIKSLKERIKTAEQKIKDTVLIAPFDGVVAKRFISRGDVV--RAGQPAF--ALVNPES 255 Query: 254 RY 255 Y Sbjct: 256 FY 257 >1KFU-L nrPDB Length = 699 Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust. Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Query: 143 QQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLD--YTRIVAPMAGEVTQITTL 200 +D D + K+A +D +I+ N D ++ ++D R+ A +AGE +I+ Sbjct: 491 NKDGDFCIRVFSEKKADYQAVDDEIEANLEEFDISEDDIDDGVRRLFAQLAGEDAEISAF 550 Query: 201 QGQTVI 206 + QT++ Sbjct: 551 ELQTIL 556 >5YFP-F nrPDB Length = 910 Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 8/52 (15%) Query: 90 GVIDPEQAENQIKEVEATLMELRAQ--------RQQAEAELKLARVTYSRQQ 133 GV P EN IK +EAT MEL+ + E E++L + + RQ+ Sbjct: 804 GVDAPTLFENNIKSLEATFMELKQCIELLKTQGKDYNEPEIRLRKYSRIRQE 855 >4KKT-A nrPDB Length = 296 Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 29/56 (51%) Query: 41 VRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQ 96 V+ G L + G +D K D+ G++ +L + +G V+K Q++ +DP + Sbjct: 32 VKKGILSDYLSLNGDVDTKVKADIFPDAVGKITSLRIKLGAYVQKGQIVATLDPSR 87 >2VDI-A nrPDB Length = 475 Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%) Query: 244 WFTVLGDPLT---RYEGQIKDVLPTPEKVNDAIFYYA 277 W TV D LT RY+G+ D+ P P + N I Y A Sbjct: 66 WTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVA 102 >6FKF-e nrPDB Length = 134 Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust. Identities = 14/35 (40%), Positives = 22/35 (62%) Query: 92 IDPEQAENQIKEVEATLMELRAQRQQAEAELKLAR 126 IDP++A+ ++ EA L + +RQ+ EA L L R Sbjct: 87 IDPQEAQQTLEIAEANLRKAEGKRQKIEANLALRR 121 >2C3X-A nrPDB Length = 102 Score = 28.9 bits (63), Expect = 4.0, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Query: 235 IHLKPGQKAWFTVLGDPLTR--YEGQIKDVLPTPE 267 IH Q AW T+ G PLT+ YEG +K + E Sbjct: 25 IHYSLNQGAWTTLPGVPLTKSEYEGYVKVTIEAEE 59 >5U25-A nrPDB Length = 602 Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust. Identities = 13/34 (38%), Positives = 24/34 (70%) Query: 62 VDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 95 +DV A+V+G +K + V +GDK+ + L+ V++ E Sbjct: 54 MDVPAEVAGVIKEVKVKVGDKISEGGLIVVVEAE 87 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 5NIL-D nrPDB 441 e-124 4DK0-A nrPDB 347 6e-96 4DK1-A nrPDB 323 9e-89 3LNN-A nrPDB 284 5e-77 5O66-D nrPDB 254 5e-68 4L8J-A nrPDB 229 2e-60 2F1M-A nrPDB 220 1e-57 6IOK-I nrPDB 199 2e-51 Sequences not found previously or not previously below threshold: 3OPO-A nrPDB 65 5e-11 3T51-B nrPDB 62 3e-10 4TKO-B nrPDB 62 3e-10 4KKT-A nrPDB 52 4e-07 5NEN-A nrPDB 43 3e-04 4QGK-A nrPDB 31 0.63 5MLK-A nrPDB 30 1.6 6H65-A nrPDB 30 1.6 5C21-A nrPDB 30 1.8 5U25-A nrPDB 30 2.1 4CIU-A nrPDB 29 3.2 5OFO-C nrPDB 28 5.2 5KS8-C nrPDB 28 5.5 3U9T-A nrPDB 28 7.1 4AIM-A nrPDB 28 8.6 >5NIL-D nrPDB Length = 371 Score = 441 bits (1133), Expect = e-124, Method: Composition-based stats. Identities = 368/371 (99%), Positives = 369/371 (99%) Query: 1 MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALR 60 MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALR Sbjct: 1 MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALR 60 Query: 61 KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEA 120 KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEA Sbjct: 61 KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEA 120 Query: 121 ELKLARVTYSRQQRLAQTKAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTN 180 ELKLARVTYSRQQRLAQT+AVSQQDLD AATEMAVKQAQIGTIDAQIKRNQASLDTAKTN Sbjct: 121 ELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTN 180 Query: 181 LDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHLKPG 240 LDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHLKPG Sbjct: 181 LDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHLKPG 240 Query: 241 QKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQL 300 QKAWFTVLGD LTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQL Sbjct: 241 QKAWFTVLGDQLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQL 300 Query: 301 TDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEV 360 TDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEV Sbjct: 301 TDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEV 360 Query: 361 VIGEAKPGAAQ 371 VIGEAKPGAAQ Sbjct: 361 VIGEAKPGAAQ 371 >4DK0-A nrPDB Length = 369 Score = 347 bits (889), Expect = 6e-96, Method: Composition-based stats. Identities = 124/354 (35%), Positives = 193/354 (54%), Gaps = 22/354 (6%) Query: 35 TYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 TY T V+ G+++++V+ATG ++++ VDVGAQVSG++ L V +G +VKK LL ID Sbjct: 6 TYLTEEVKRGNIEKNVVATGSIESINTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDS 65 Query: 95 EQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAVSQQDLDTAATEMA 154 N + +A L +AQ + +A Y R +L KA S L+TA + Sbjct: 66 TTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLN 125 Query: 155 VKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNI 214 +A++ + IK+ + ++TA+TNL YT+I +P+ G V +GQTV + Q P I Sbjct: 126 NAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTPTI 185 Query: 215 LTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVND--- 271 + +AD+S M +K ++SE D+ +K GQ FT+L D T Y +I V P ++D Sbjct: 186 IKVADLSKMRIKPEISEGDITKVKAGQDVTFTILSDNKTVYHAKIDSVDPATTTISDNSS 245 Query: 272 -----------------AIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSAL 314 A++YYA V NP +LR+ MT + +I++ DV+NVL IP A+ Sbjct: 246 SNSSSSGSSSSSGSSSSAVYYYANIIVENPEHVLRIGMTTENNIKIADVQNVLFIPNLAV 305 Query: 315 GDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPG 368 ++Y V +L T+ERE+ IG +ND E+ GL G++VVI + G Sbjct: 306 QKQ--QDKYVVNVLNGNTTQEREIEIGVQNDFQTEVKSGLTEGEKVVISQVAAG 357 >4DK1-A nrPDB Length = 341 Score = 323 bits (827), Expect = 9e-89, Method: Composition-based stats. Identities = 119/354 (33%), Positives = 185/354 (52%), Gaps = 50/354 (14%) Query: 35 TYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 TY T V+ G+++++V+ATG ++++ VDVGAQVSG++ L V +G +VKK LL IDP Sbjct: 6 TYLTEEVKRGNIEKNVVATGSIESINTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDP 65 Query: 95 EQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAVSQQDLDTAATEMA 154 E + +A L + Q Q R + L +AVS+Q Sbjct: 66 ATYEADYQSAQANLASTQEQAQ--------------RYKLLVADQAVSKQ---------- 101 Query: 155 VKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNI 214 Q +A +++A+++ A+ NL YT+I +P+ G V +GQTV + Q P I Sbjct: 102 ----QYADANAAYLQSKAAVEQARINLRYTKITSPIDGTVISTPVSEGQTVNSNQTTPTI 157 Query: 215 LTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVND--- 271 + +AD+S M +K ++SE D+ +K GQ FT+L D T Y +I V P ++D Sbjct: 158 IKVADLSKMRIKPEISEGDITKVKAGQDVTFTILSDNKTVYHAKIDSVDPATTTISDNSS 217 Query: 272 -----------------AIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSAL 314 A++YYA V NP +LR+ MT + +I++ DV+NVL IP A+ Sbjct: 218 SNSSSSGSSSSSGSSSSAVYYYANIIVENPEHVLRIGMTTENNIKIADVQNVLFIPNLAV 277 Query: 315 GDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPG 368 ++Y V +L T+ERE+ IG +ND E+ GL G++VVI + G Sbjct: 278 QKQ--QDKYVVNVLNGNTTQEREIEIGVQNDFQTEVKSGLTEGEKVVISQVAAG 329 >3LNN-A nrPDB Length = 359 Score = 284 bits (725), Expect = 5e-77, Method: Composition-based stats. Identities = 88/350 (25%), Positives = 153/350 (43%), Gaps = 37/350 (10%) Query: 28 ILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVD------VGAQVSGQLKTLSVAIGD 81 ++ A P +TL V P +++V A L A+ + D V ++G++ +L+ +GD Sbjct: 19 VVPAESPLRRTLAVAPA-TRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGD 77 Query: 82 KVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAV 141 +VK +L ID A L + + +A A + +AR RQ+ L +++ Sbjct: 78 EVKAGDVLFTID-----------SADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIA 126 Query: 142 SQQDLDTAATEMAVKQAQIGTIDAQIKR--NQASLDTAKTNLDYTRIVAPMAGEVTQITT 199 +++D + A ++ ++ DA++ + + + +P+ G V + Sbjct: 127 AKRDFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNA 186 Query: 200 LQGQTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHLKPGQKAW--FTVLGDP---LTR 254 G +++T+AD+S + V A E D+ H+ GQ A F DP R Sbjct: 187 ATG--AYWNDTTASLMTVADLSHVFVTANAQEKDLGHVYVGQSATVKFDAYDDPQPGKVR 244 Query: 255 YEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSAL 314 Y GQI D KV R NP+G LR M AQ L+ + +P+SA+ Sbjct: 245 YVGQILDADTRTTKV--------RMVFDNPDGRLRPGMFAQATF-LSQPHEGIVVPMSAI 295 Query: 315 GDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGE 364 R V++ + R + +GA+ +E+ GL AGD VV+ E Sbjct: 296 VQSGFYTRAFVEVA-PWQFEPRVIKLGAQIGDRMEVKSGLSAGDRVVVKE 344 >5O66-D nrPDB Length = 373 Score = 254 bits (648), Expect = 5e-68, Method: Composition-based stats. Identities = 81/354 (22%), Positives = 155/354 (43%), Gaps = 36/354 (10%) Query: 32 PVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGV 91 +P + V+ LQ + G+ A R +V QVSG + + G ++ L Sbjct: 12 QMPAVGVVTVKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQ 71 Query: 92 IDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAVSQQDLDTAAT 151 IDP +AT + +A+A +A++T +R Q+L T+ +S+Q+ D A Sbjct: 72 IDPATY-------QATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALA 124 Query: 152 EMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQA 211 + A + +A+++TA+ NL YT++ +P++G + + +G V QA Sbjct: 125 DAQQANAAVTAA-------KAAVETARINLAYTKVTSPISGRIGKSNVTEGALV-QNGQA 176 Query: 212 PNILTLADMSAMLVKAQVSEADVIHLK----------PGQKAWFTVLGDPLTRY--EGQI 259 + T+ + + V S D++ LK KA +++ ++ +G + Sbjct: 177 TALATVQQLDPIYVDVTQSSNDMMRLKQELANGTLKQENGKAKVSLITSDGIKFPQDGTL 236 Query: 260 KDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALG-DPV 318 + T ++ +I A F PNP+ + M + ++ N + +P + P Sbjct: 237 EFSDVTVDQTTGSITLRAIF--PNPDHTMMPGMFVRARLEEGLNPNAILVPQQGVTRTPR 294 Query: 319 GDNRYKVKLLRNGETREREVTIGARNDTDVEIV-KGLEAGDEVVIG---EAKPG 368 GD V ++ + E + ++ D +V +GL+AGD VVI + +PG Sbjct: 295 GD--ATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPG 346 >4L8J-A nrPDB Length = 328 Score = 229 bits (583), Expect = 2e-60, Method: Composition-based stats. Identities = 85/349 (24%), Positives = 156/349 (44%), Gaps = 58/349 (16%) Query: 38 TLIVRPGDL----QQSVL---ATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLG 90 T +VRP QSV+ +G ++A+ V + +VSGQ+ L V G +VKK QL+ Sbjct: 4 TALVRPVKTATVSSQSVILKDFSGMVEAVEYVKLAFRVSGQIINLPVVEGQRVKKGQLIA 63 Query: 91 VIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAVSQQDLDTAA 150 IDP + L+ +A E A+V R +RL +A+S Q+ + + Sbjct: 64 AIDPRD------------ISLQYAADKAAYETAAAQV--ERNKRLLGRQAISLQEYEISV 109 Query: 151 TEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQ 210 A ++ +++ + + N+ T+++AP G + Q V + + Sbjct: 110 --------------ANYQKAKSAYELSTNNMRDTKLLAPFDGSIETRLVENYQRVNSGE- 154 Query: 211 APNILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDPL--TRYEGQIKDVL----- 263 I+ L + + +K V + D ++L + A F V D T + ++++ L Sbjct: 155 --GIVRLVNTRKLRIKFTVPD-DYLYLLRAKDATFKVEFDTYKGTVFNARLEEYLDISTD 211 Query: 264 ----PTPEKVNDAIFYYARFEV-PNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSAL-GDP 317 P ++DA F ++V P +RL I+ + ++ +PLSA+ GD Sbjct: 212 GTGIPVTIIIDDAAFDRTIYDVKPGFTCNIRLASDIAPFIE----EKLMNVPLSAVFGDS 267 Query: 318 VGDNRYKVKLLRNGETREREVTIGA-RNDTDVEIVKGLEAGDEVVIGEA 365 N Y V ++++ + REVT+ + + ++ I KGL+ G+ VV Sbjct: 268 ENKNTY-VWIVKDNKVNRREVTVYSPTGEANLLISKGLKPGETVVTAGV 315 >2F1M-A nrPDB Length = 277 Score = 220 bits (559), Expect = 1e-57, Method: Composition-based stats. Identities = 64/287 (22%), Positives = 125/287 (43%), Gaps = 29/287 (10%) Query: 40 IVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAEN 99 +V+ LQ + G+ A R +V QVSG + + G ++ L IDP Sbjct: 1 MVKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATY-- 58 Query: 100 QIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAVSQQDLDTAATEMAVKQAQ 159 +AT + +A+A +A++T +R Q+L T+ +S+Q+ D A + A Sbjct: 59 -----QATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAA 113 Query: 160 IGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLAD 219 + +A+++TA+ NL YT++ +P++G + + +G V QA + T+ Sbjct: 114 VTAA-------KAAVETARINLAYTKVTSPISGRIGKSNVTEGALV-QNGQATALATVQQ 165 Query: 220 MSAMLVKAQVSEADVIHLK----------PGQKAWFTVLGDPLTRY--EGQIKDVLPTPE 267 + + V S D++ LK KA +++ ++ +G ++ T + Sbjct: 166 LDPIYVDVTQSSNDMMRLKQELANGTLKQENGKAKVSLITSDGIKFPQDGTLEFSDVTVD 225 Query: 268 KVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSAL 314 + +I A F PNP+ + M + ++ N + +P L Sbjct: 226 QTTGSITLRAIF--PNPDHTMMPGMFVRARLEEGLNPNAILVPQQGL 270 >6IOK-I nrPDB Length = 362 Score = 199 bits (505), Expect = 2e-51, Method: Composition-based stats. Identities = 68/346 (19%), Positives = 129/346 (37%), Gaps = 46/346 (13%) Query: 30 NAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLL 89 A P + + + + G+ +A R +V QV+G + G VK Q L Sbjct: 11 PAQTPEVGIVTLEAQTVTLNTELPGRTNAFRIAEVRPQVNGIILKRLFKEGSDVKAGQQL 70 Query: 90 GVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAVSQQDLDTA 149 IDP E + +A L + Q Q R + L +AVS+Q Sbjct: 71 YQIDPATYEADYQSAQANLASTQEQAQ--------------RYKLLVADQAVSKQ----- 111 Query: 150 ATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQ 209 Q +A +++A+++ A+ NL YT++++P++G + + +G V Sbjct: 112 ---------QYADANAAYLQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVT-NG 161 Query: 210 QAPNILTLADMSAMLVKAQVSEADVIHLKP-------------GQKAWFTVLGDPLTRYE 256 QA + T+ + + V ++ L+ K + E Sbjct: 162 QANAMATVQQLDPIYVDVTQPSTALLRLRRELASGQLERAGDNAAKVSLKLEDGSQYPLE 221 Query: 257 GQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGD 316 G+++ + ++ ++ A F PNPN L M +Q + + P + Sbjct: 222 GRLEFSEVSVDEGTGSVTIRAVF--PNPNNELLPGMFVHAQLQEGVKQKAILAPQQGVTR 279 Query: 317 PVGDNRYKVKLLRNGETREREVTIGARNDTDVEIV-KGLEAGDEVV 361 + + ++ E V R D +V +GL AGD+++ Sbjct: 280 DL-KGQATALVVNAQNKVELRVIKADRVIGDKWLVTEGLNAGDKII 324 >3OPO-A nrPDB Length = 413 Score = 64.9 bits (156), Expect = 5e-11, Method: Composition-based stats. Identities = 62/331 (18%), Positives = 112/331 (33%), Gaps = 47/331 (14%) Query: 36 YQTLIVRPGDLQQSVLATGKL--DALRKVDVGAQVSGQLKTLS-VAIGDKVKKDQLLGVI 92 +T V G L + + + + V A+ +G + + + +GDKV+K L Sbjct: 94 VKTATVTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPL--- 150 Query: 93 DPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAVSQQDLDTAATE 152 L +A++E L R T A + + Sbjct: 151 ---------------LDLTIPDWVEAQSEYLLLRET--------GGTATQTEGILERLRL 187 Query: 153 MAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAP 212 + +A I + A T K +T + AP+ G +T G + Sbjct: 188 AGMPEADIRRLIA----------TQKIQTRFT-LKAPIDGVITAFDLRAGMNIAKDNV-- 234 Query: 213 NILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDA 272 + + M + V A + E+ +K + TV P + +LP + Sbjct: 235 -VAKIQGMDPVWVTAAIPESIAWLVKDASQFTLTVPARPDKTLTIRKWTLLPGVDAATR- 292 Query: 273 IFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGE 332 R EV N + L+ M A + + +L IP AL D + R + + +G Sbjct: 293 -TLQLRLEVDNADEALKPGMNAWLQLNTASEP-MLLIPSQALIDTGSEQR-VITVDADGR 349 Query: 333 TREREVTIGARNDTDVEIVKGLEAGDEVVIG 363 + V + + + GL G++VV Sbjct: 350 FVPKRVAVFQASQGVTALRSGLAEGEKVVSS 380 >3T51-B nrPDB Length = 336 Score = 62.2 bits (149), Expect = 3e-10, Method: Composition-based stats. Identities = 62/331 (18%), Positives = 112/331 (33%), Gaps = 47/331 (14%) Query: 36 YQTLIVRPGDLQQSVLATGKL--DALRKVDVGAQVSGQLKTLS-VAIGDKVKKDQLLGVI 92 +T V G L + + + + V A+ +G + + + +GDKV+K L Sbjct: 17 VKTATVTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPL--- 73 Query: 93 DPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAVSQQDLDTAATE 152 L +A++E L R T A + + Sbjct: 74 ---------------LDLTIPDWVEAQSEYLLLRET--------GGTATQTEGILERLRL 110 Query: 153 MAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAP 212 + +A I + A T K +T + AP+ G +T G + Sbjct: 111 AGMPEADIRRLIA----------TQKIQTRFT-LKAPIDGVITAFDLRAGMNIAKDNV-- 157 Query: 213 NILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDA 272 + + M + V A + E+ +K + TV P + +LP + Sbjct: 158 -VAKIQGMDPVWVTAAIPESIAWLVKDASQFTLTVPARPDKTLTIRKWTLLPGVDAATR- 215 Query: 273 IFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGE 332 R EV N + L+ M A + + +L IP AL D + R + + +G Sbjct: 216 -TLQLRLEVDNADEALKPGMNAWLQLNTASEP-MLLIPSQALIDTGSEQR-VITVDADGR 272 Query: 333 TREREVTIGARNDTDVEIVKGLEAGDEVVIG 363 + V + + + GL G++VV Sbjct: 273 FVPKRVAVFQASQGVTALRSGLAEGEKVVSS 303 >4TKO-B nrPDB Length = 358 Score = 62.2 bits (149), Expect = 3e-10, Method: Composition-based stats. Identities = 49/280 (17%), Positives = 101/280 (36%), Gaps = 80/280 (28%) Query: 64 VGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMEL------------ 111 + +VSG++ + +GD VK+ + L +DP E + + +E + L Sbjct: 23 LSFRVSGKVIEVYKDLGDYVKRGEALAKLDPTYYELEKRTLEKKMSALLEKKKALEIKIQ 82 Query: 112 ---------------------------RAQRQQAEAELKLARVTYSRQQRLAQTKAVSQQ 144 R + Q E ++KL ++ + R + L Q + ++ Sbjct: 83 KLEKGLHISLSAKKLKVESLKKKREALREKLLQVEEKIKLVKLDWERYKSLFQKGLIPRR 142 Query: 145 DLDTAATEMAVKQAQ-------IGTIDAQIKRNQASLDTAKT------------------ 179 + T + V + I I+ +IKR + ++ A+ Sbjct: 143 KFEEVDTNLKVLLHEREYLEKSIQEINTEIKRAKKGIENARNEFKTIEELKKELSSLEEE 202 Query: 180 -------------NLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSAMLVK 226 + T ++AP G V + +G V A Q A ++ + + V+ Sbjct: 203 IKSLKERIKTAEQKIKDTVLIAPFDGVVAKRFISRGDVVRAGQPAFALV---NPESFYVE 259 Query: 227 AQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTP 266 + E + +K G KA+ + P +EG ++++ P Sbjct: 260 VLLEETKLKGVKVGNKAYVRLDAYPDILFEGVVEEISPAS 299 >4KKT-A nrPDB Length = 296 Score = 51.8 bits (122), Expect = 4e-07, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 82/198 (41%), Gaps = 6/198 (3%) Query: 172 ASLDTAKTNLDYTR--IVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSAMLVKAQV 229 A+LD ++ Y + + AP++G + IT G+TV NI + + + V Sbjct: 81 ATLDPSRPGSVYLKSPVRAPISGYILNITKKIGETVN---PQSNIAVVGRIDTKQILTYV 137 Query: 230 SEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLR 289 SE + ++K G A V +++ ++ ++ P + + I Y N + L+ Sbjct: 138 SEKYISNIKVGNDAIIEVGAYSNEKFKAKVSEISPILDSKSRTIEVYLTPIGSNLDKLI- 196 Query: 290 LDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVE 349 + M +++ + K+V+ I A+ + G L + + +T+ D V Sbjct: 197 IGMFSKIKLITKRFKDVIKISREAVVEREGKKFVFKVDLESKSVQMLPITVLFEIDNIVA 256 Query: 350 IVKGLEAGDEVVIGEAKP 367 + +E D +V+ Sbjct: 257 LSGEVEENDLIVVEGMSA 274 Score = 42.2 bits (97), Expect = 3e-04, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 42/104 (40%), Gaps = 2/104 (1%) Query: 41 VRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQ 100 V+ G L + G +D K D+ G++ +L + +G V+K Q++ +DP + + Sbjct: 32 VKKGILSDYLSLNGDVDTKVKADIFPDAVGKITSLRIKLGAYVQKGQIVATLDPSRPGSV 91 Query: 101 I--KEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAVS 142 V A + + E + + R+ + ++ Sbjct: 92 YLKSPVRAPISGYILNITKKIGETVNPQSNIAVVGRIDTKQILT 135 >5NEN-A nrPDB Length = 448 Score = 42.6 bits (98), Expect = 3e-04, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 71/203 (34%), Gaps = 14/203 (6%) Query: 111 LRAQRQQAEAELKLARVTYSRQQRLAQTKAVSQQDLDTAATEMAVK-QAQIGTIDAQIKR 169 L QRQ AE + T R +L + SQQ +D + + + Q+ Sbjct: 199 LEVQRQFAEVNSSIDE-TVGRIGQLQKQLLESQQRIDQRFADYQREVRTQLAQTQMDASE 257 Query: 170 NQASLDTAKTNLDYTRIVAPMAGEVTQITT-LQGQTVIAAQQAPNILTLADMSAMLVKAQ 228 + L A +L T I +P+ G V + QG V A +++ + + + Sbjct: 258 FRNKLQMADFDLGNTAITSPVDGTVVGLNIFTQGGVVGAGDHLMDVVPSQATLVVDSRLK 317 Query: 229 VSEADVIHLKPGQKAWFTVLGDPLTRY---EGQIKDVLPTPEKVNDAIFYYARFEVPNPN 285 V D ++ FT T + +K N +Y + V +P Sbjct: 318 VDLFDKVYNGLPVDLMFTAFNQNKTPKIPGTVTLVSADRLVDKANGEPYYQMQVTV-SPE 376 Query: 286 GL-------LRLDMTAQVHIQLT 301 G+ ++ M +V ++ Sbjct: 377 GMKMLSGEDIKPGMPVEVFVKTG 399 Score = 36.4 bits (82), Expect = 0.022, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Query: 46 LQQSVLATGKLD-ALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEV 104 L + V + G + + + V A SG +K ++V GDKVK ++L + QA+ Q+ + Sbjct: 26 LDKGVASPGSVTVSGNRKTVQAPASGIIKNIAVRDGDKVKAGEVLVQLSQVQAQAQVDSL 85 Query: 105 EATLMELRAQRQQAEAELK 123 A + AE Sbjct: 86 RDQYYTTLATEGRLLAERD 104 >4QGK-A nrPDB Length = 461 Score = 31.4 bits (69), Expect = 0.63, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 10/76 (13%) Query: 209 QQAPNILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQ--IKDVLPTP 266 +++P+ + ++ ++ L GQK F D TRY + DV P Sbjct: 275 KESPDYERIINLRHF--------KRILSLLEGQKIAFGGETDEATRYIAPTVLTDVDPKT 326 Query: 267 EKVNDAIFYYARFEVP 282 + + + IF VP Sbjct: 327 KVMQEEIFGPILPIVP 342 >5MLK-A nrPDB Length = 614 Score = 30.2 bits (66), Expect = 1.6, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 20/42 (47%) Query: 64 VGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVE 105 V A + G + +V G +V L+ V++ + EN + + Sbjct: 548 VTAPMQGTVVKFAVEEGQEVVAGDLVVVLEAMKMENPVTAHK 589 Score = 29.9 bits (65), Expect = 1.9, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%) Query: 169 RNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQ 209 R + + A + D + APM G V + +GQ V+A Sbjct: 533 RKRGAHTGAAASGD--AVTAPMQGTVVKFAVEEGQEVVAGD 571 >6H65-A nrPDB Length = 317 Score = 30.2 bits (66), Expect = 1.6, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 7/112 (6%) Query: 162 TIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQIT-----TLQGQTVIAAQQAPNILT 216 I A + ++ + A+ N +T ++ G+V++ ++ VI+ +IL Sbjct: 167 KIGANYQNSRLAQTEARVNGYHTSVLLNSRGKVSETPGACLLMVRDGRVISPPVTADILE 226 Query: 217 LADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEK 268 L+ +E D ++ + G I ++LP Sbjct: 227 SV-TRKTLMSLSEAELDSPVIERDMDRT-ELYIAEEVFLCGTIAEILPVTTI 276 >5C21-A nrPDB Length = 279 Score = 29.9 bits (65), Expect = 1.8, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 47/116 (40%) Query: 63 DVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAEL 122 ++ + +K + V G+ V+K +L + AE + +++L++ R ++ + + Sbjct: 5 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQTRLEQTRYQILS 64 Query: 123 KLARVTYSRQQRLAQTKAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAK 178 + + + +L + ++ + Q T Q + + +LD + Sbjct: 65 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKR 120 >5U25-A nrPDB Length = 602 Score = 29.9 bits (65), Expect = 2.1, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 24/35 (68%) Query: 61 KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 95 +DV A+V+G +K + V +GDK+ + L+ V++ E Sbjct: 53 TMDVPAEVAGVIKEVKVKVGDKISEGGLIVVVEAE 87 >4CIU-A nrPDB Length = 727 Score = 29.1 bits (63), Expect = 3.2, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 85/259 (32%), Gaps = 33/259 (12%) Query: 91 VIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAVSQQDLDTAA 150 ID + E + ++L Q +A + ++ K +L+ Sbjct: 262 QIDSKPEELDRLDRRIIQLKLEQQALM-KASDEASKKRLDMLNEELSDKERQYSELEEEW 320 Query: 151 TEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEV-------TQITTLQGQ 203 + TI A++++ + +++ A+ D R+ G++ T L+G+ Sbjct: 321 KAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGK 380 Query: 204 TVIAAQQAPNILTLAD-------------MSAMLVKAQVSEADVIHLKPGQKAWFTVLGD 250 T+ + +A+ M + K E ++ H GQ + + Sbjct: 381 TMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSN 440 Query: 251 ----------PLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQL 300 R G + PT + A F + ++R+DM+ ++ Sbjct: 441 AIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMS--EFMEK 498 Query: 301 TDVKNVLTIPLSALGDPVG 319 V ++ P +G G Sbjct: 499 HSVSRLVGAPPGYVGYEEG 517 >5OFO-C nrPDB Length = 871 Score = 28.3 bits (61), Expect = 5.2, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 86/259 (33%), Gaps = 33/259 (12%) Query: 91 VIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAVSQQDLDTAA 150 ID + E + ++L Q E++ + ++ K +L+ Sbjct: 408 QIDSKPEELDRLDRRIIQLKLEQQALMKESD-EASKKRLDMLNEELSDKERQYSELEEEW 466 Query: 151 TEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEV-------TQITTLQGQ 203 + TI A++++ + +++ A+ D R+ G++ T L+G+ Sbjct: 467 KAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGK 526 Query: 204 TVIAAQQAPNILTLAD-------------MSAMLVKAQVSEADVIHLKPGQKAWFTVLGD 250 T+ + +A+ M + K E ++ H GQ + + Sbjct: 527 TMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSN 586 Query: 251 ----------PLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQL 300 R G + PT + A F + ++R+DM+ ++ Sbjct: 587 AIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMS--EFMEK 644 Query: 301 TDVKNVLTIPLSALGDPVG 319 V ++ P +G G Sbjct: 645 HSVSRLVGAPPGYVGYEEG 663 >5KS8-C nrPDB Length = 617 Score = 28.3 bits (61), Expect = 5.5, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 49 SVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEA 106 S ++G+ V + G + + V +GDKV + VI+ + EN+I+ ++ Sbjct: 534 SAASSGRPRPTHAGCVTTAMPGTIVDVKVNVGDKVSAGDAVLVIEAMKMENEIQASKS 591 >3U9T-A nrPDB Length = 655 Score = 27.9 bits (60), Expect = 7.1, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%) Query: 186 IVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHLKP 239 + APM G + ++ GQTV A TL + AM ++ + +K Sbjct: 585 LSAPMNGSIVRVLVEPGQTVEAG------ATLVVLEAMKMEHSIRAPHAGVVKA 632 >4AIM-A nrPDB Length = 726 Score = 27.5 bits (59), Expect = 8.6, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 15/38 (39%) Query: 178 KTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNIL 215 + + + V P+ GEV + G + + I+ Sbjct: 331 RIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIV 368 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.306 0.116 0.259 Lambda K H 0.267 0.0353 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,521,351 Number of Sequences: 36641 Number of extensions: 313046 Number of successful extensions: 1228 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 31 Number of HSP's that attempted gapping in prelim test: 1118 Number of HSP's gapped (non-prelim): 86 length of query: 371 length of database: 10,336,785 effective HSP length: 99 effective length of query: 272 effective length of database: 6,709,326 effective search space: 1824936672 effective search space used: 1824936672 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 59 (27.6 bits)