BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P75820 (276 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 2WKX-A nrPDB 531 e-151 4BPA-A nrPDB 192 2e-49 4BXE-A nrPDB 181 3e-46 2Y2E-A nrPDB 82 3e-16 1LBA-A nrPDB 30 0.99 5UK3-A nrPDB 29 1.7 3RDR-A nrPDB 29 2.1 3BH2-A nrPDB 29 2.3 4KXT-A nrPDB 29 2.3 6H7F-A nrPDB 29 2.5 4V8M-BZ nrPDB 28 3.4 5MZ6-B nrPDB 28 4.1 5VM9-A nrPDB 28 4.3 5F0G-A nrPDB 28 5.6 5C3R-A nrPDB 27 7.6 4QLB-A nrPDB 27 7.9 1JLV-A nrPDB 27 9.5 >2WKX-A nrPDB Length = 261 Score = 531 bits (1367), Expect = e-151, Method: Compositional matrix adjust. Identities = 259/259 (100%), Positives = 259/259 (100%) Query: 18 AGEKGIVEKEGYQLDTRRQAQAAYPRIKVLVIHYTADDFDSSLATLTDKQVSSHYLVPAV 77 AGEKGIVEKEGYQLDTRRQAQAAYPRIKVLVIHYTADDFDSSLATLTDKQVSSHYLVPAV Sbjct: 3 AGEKGIVEKEGYQLDTRRQAQAAYPRIKVLVIHYTADDFDSSLATLTDKQVSSHYLVPAV 62 Query: 78 PPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPF 137 PPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPF Sbjct: 63 PPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPF 122 Query: 138 EPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDA 197 EPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDA Sbjct: 123 EPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDA 182 Query: 198 QRVNFYLAGRAPHTPVDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGE 257 QRVNFYLAGRAPHTPVDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGE Sbjct: 183 QRVNFYLAGRAPHTPVDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGE 242 Query: 258 ADAETQAIAEALLEKYGQD 276 ADAETQAIAEALLEKYGQD Sbjct: 243 ADAETQAIAEALLEKYGQD 261 >4BPA-A nrPDB Length = 259 Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 113/270 (41%), Positives = 155/270 (57%), Gaps = 15/270 (5%) Query: 1 MRRFFWLVAAALLLAGCAGEKGIVEKEGYQLDTRRQAQAAYPRIKVLVIHYTADDFDSSL 60 MR F L LLAGC+ G +L+T + R++ +V+HYT+ D SL Sbjct: 1 MRSFVLLAFTLSLLAGCS--------SGPRLNTDYTSANQDSRVQFIVLHYTSTDLPHSL 52 Query: 61 ATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIEL 120 LT VS+HYL+ P +++LV E AWHAG+S W+G T LN TSIGIE+ Sbjct: 53 GILTHGGVSAHYLIGDDEP-----ATVYRLVDENRRAWHAGVSEWQGRTWLNATSIGIEI 107 Query: 121 ENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPL 180 N+G++ + + + PF AQIQALIPL KDI R+ I P+ ++ H+DIAP RK DPGPL Sbjct: 108 VNQGYRDTPQGRVWYPFSEAQIQALIPLLKDIAKRHGITPDRIIGHSDIAPGRKVDPGPL 167 Query: 181 FPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASLLELLARYGYDV-KPDMTPREQR 239 FPW++LA G+ WP + LA P D + LAR+GY V + ++ R Sbjct: 168 FPWKRLADAGLVPWPKPGELARRLAELNGQLP-DVRWFQQQLARHGYLVPQTGELEKDTR 226 Query: 240 RVIMAFQMHFRPTLYNGEADAETQAIAEAL 269 VI AFQM +RP ++GE D ET A+ A+ Sbjct: 227 DVIGAFQMKYRPARFDGEPDLETAALLLAV 256 >4BXE-A nrPDB Length = 255 Score = 181 bits (459), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 108/237 (45%), Positives = 137/237 (57%), Gaps = 7/237 (2%) Query: 43 RIKVLVIHYTADDFDSSLATLTDKQVSSHYLVPA-VPPRYNGK----PRIWQLVPEQELA 97 R++ LV+HYTA DF +S+ LT S+HYL+PA P Y RI+ LV E++ A Sbjct: 18 RVRFLVLHYTALDFAASVKALTTGAASAHYLIPAPHDPSYKAAGFKGQRIFNLVAEEDRA 77 Query: 98 WHAGISAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARY- 156 WHAG+S W LNDTSIGIE+ N + GV F +E +QI AL LAK+I+ RY Sbjct: 78 WHAGVSGWARRDNLNDTSIGIEIVNLA-RDDDGVFTFPDYERSQINALKQLAKNILQRYP 136 Query: 157 HIKPENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTA 216 + P+NVV H+DIA RK DPGP PW++L + GIGAW D + Y G A Sbjct: 137 DMTPKNVVGHSDIAVGRKSDPGPKLPWKELYEAGIGAWYDDATRDRYREGFERDGLPPRA 196 Query: 217 SLLELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGEADAETQAIAEALLEKY 273 LLE YGY + + ++ AFQMHFRP Y+G D ET AI AL EKY Sbjct: 197 DLLEAFRLYGYALPATVDDAYFASLLRAFQMHFRPENYDGALDVETAAILYALNEKY 253 >2Y2E-A nrPDB Length = 187 Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/127 (39%), Positives = 68/127 (53%), Gaps = 16/127 (12%) Query: 60 LATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIE 119 A + +VS+H L+ R +G+ I Q VP + AWHAG+S+++G R ND SIGIE Sbjct: 64 FAGIAHLRVSAHCLI-----RRDGE--IVQYVPFDKRAWHAGVSSYQGRERCNDFSIGIE 116 Query: 120 LENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGP 179 LE G A + AQ Q L + +I RY N+ H +IAP+RK DPGP Sbjct: 117 LE--------GTDTLA-YTDAQYQQLAAVTNALITRYPAIANNMTGHCNIAPERKTDPGP 167 Query: 180 LFPWQQL 186 F W + Sbjct: 168 SFDWARF 174 >1LBA-A nrPDB Length = 146 Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 17/67 (25%) Query: 112 NDTSIGIEL----ENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVV--A 165 N SIG+ L +++G K+ A F PAQ+Q+L L ++A+Y E V A Sbjct: 69 NHNSIGVCLVGGIDDKG-------KFDANFTPAQMQSLRSLLVTLLAKY----EGAVLRA 117 Query: 166 HADIAPQ 172 H ++AP+ Sbjct: 118 HHEVAPK 124 >5UK3-A nrPDB Length = 176 Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Query: 228 DVKPDMTPREQRRVIMAFQMHFRPTLYNGEADA 260 D K D+T EQ RVI+ F P Y G+ DA Sbjct: 129 DCKIDVTKNEQSRVILRIDGKFLP-YYKGQLDA 160 >3RDR-A nrPDB Length = 157 Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 14/81 (17%) Query: 86 RIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPFEPAQIQAL 145 I+Q +P E WHAG G N SIGIE+ ++A + AQ Sbjct: 67 EIYQHLPLNENGWHAG----DGNGSGNRASIGIEI-----CENADGDFAKATANAQW--- 114 Query: 146 IPLAKDIIARYHIKPENVVAH 166 L K ++A ++I NVV H Sbjct: 115 --LIKTLMAEHNISLANVVPH 133 >3BH2-A nrPDB Length = 244 Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 6/49 (12%) Query: 65 DKQVSSHYLVPAVPPRYNGKPRIWQLVPEQ--ELAWHAGISAWRGATRL 111 D+ +Y++ +P Y+G PRI +L+ + ++ H AW G TRL Sbjct: 159 DQICRPNYMLKIIP-NYDGSPRICELINAKITDVTVH---EAWTGPTRL 203 >4KXT-A nrPDB Length = 862 Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust. Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Query: 225 YGYDVKPDMTPREQRRVIMAFQM-HFRPTLY 254 Y D+KPD PR R ++ + + HF+P ++ Sbjct: 60 YEVDIKPDKCPRRVNREVVEYMVQHFKPQIF 90 >6H7F-A nrPDB Length = 706 Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 144 ALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFPWQQLAQQGIG 192 AL+ A D I+ Y E + D AP +PG +FP Q+ QQ +G Sbjct: 469 ALLIKATDKISVYANYIEGLT-KGDQAPATASNPGEIFPPQKTKQQELG 516 >4V8M-BZ nrPDB Length = 143 Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 11/61 (18%) Query: 116 IGIELENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKD 175 +GI+ NR +K+ + AP +I PL+K++ A+Y+++ P RKD Sbjct: 2 VGIKCRNR--RKARRAHFQAPSHVRRILMSAPLSKELRAKYNVRS---------MPVRKD 50 Query: 176 D 176 D Sbjct: 51 D 51 >5MZ6-B nrPDB Length = 244 Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust. Identities = 11/38 (28%), Positives = 21/38 (55%) Query: 207 RAPHTPVDTASLLELLARYGYDVKPDMTPREQRRVIMA 244 + P +P+DTA+ E D++ DM E + V+++ Sbjct: 100 KHPCSPIDTANRCETFDSLAADIEDDMLNLEDQDVVLS 137 >5VM9-A nrPDB Length = 862 Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust. Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Query: 225 YGYDVKPDMTPRE-QRRVIMAFQMHFRPTLY 254 Y D+KPD PR R V+ + HF+ T++ Sbjct: 51 YEVDIKPDKCPRRVNREVVDSMVQHFKVTIF 81 >5F0G-A nrPDB Length = 215 Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust. Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%) Query: 248 HFRPTLY-NGEADAETQAIAEALLEKYGQD 276 H PTL NG + E++AIA L+EKYG+D Sbjct: 50 HTIPTLVDNGFSIWESRAIAVYLVEKYGKD 79 >5C3R-A nrPDB Length = 343 Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 25/55 (45%) Query: 122 NRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDD 176 NRG+ K +PA+I+ + A DI Y I E+ H + P +DD Sbjct: 89 NRGYSAPGREKVTQLTDPAEIEKIRSAAPDIKESYEIGREDEPGHPNPWPAEQDD 143 >4QLB-A nrPDB Length = 674 Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 7/81 (8%) Query: 202 FYLAGRAPHTPVDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHFRP-TLYNGEA-- 258 F+ AGR + +E LAR + +K PR ++AF ++ P +N E+ Sbjct: 346 FFTAGRYEFSNKGGDMFIESLARLNHYLKTTSDPRHMGVTVVAFLIYPAPANSFNVESLK 405 Query: 259 -DAETQAIAEA---LLEKYGQ 275 A T+ + EA + EK GQ Sbjct: 406 GQAVTKQLKEAVDRIKEKVGQ 426 >1JLV-A nrPDB Length = 209 Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 21/86 (24%) Query: 202 FYLAGRAPHTPVDTAS----------LLELLARYGYDVKPDMTPREQRRVIMAFQMHFRP 251 +YL G AP V + L L+A G +KP+ + I P Sbjct: 4 YYLPGSAPCRAVQMTAAAVGVELNLKLTNLMA--GEHMKPEFLKINPQHCI--------P 53 Query: 252 TLY-NGEADAETQAIAEALLEKYGQD 276 TL NG A E++AI L EKYG+D Sbjct: 54 TLVDNGFALWESRAICTYLAEKYGKD 79 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 2WKX-A nrPDB 406 e-114 4BPA-A nrPDB 386 e-108 4BXE-A nrPDB 335 2e-92 2Y2E-A nrPDB 160 8e-40 Sequences not found previously or not previously below threshold: 3RDR-A nrPDB 38 0.004 1LBA-A nrPDB 35 0.037 1TXD-A nrPDB 31 0.42 1PGJ-A nrPDB 31 0.75 2VYN-D nrPDB 30 0.93 6H7F-A nrPDB 30 0.99 4QLB-A nrPDB 29 1.9 2OG6-A nrPDB 29 2.6 1V4A-A nrPDB 28 4.4 4OVQ-A nrPDB 27 8.0 CONVERGED! >2WKX-A nrPDB Length = 261 Score = 406 bits (1043), Expect = e-114, Method: Composition-based stats. Identities = 259/259 (100%), Positives = 259/259 (100%) Query: 18 AGEKGIVEKEGYQLDTRRQAQAAYPRIKVLVIHYTADDFDSSLATLTDKQVSSHYLVPAV 77 AGEKGIVEKEGYQLDTRRQAQAAYPRIKVLVIHYTADDFDSSLATLTDKQVSSHYLVPAV Sbjct: 3 AGEKGIVEKEGYQLDTRRQAQAAYPRIKVLVIHYTADDFDSSLATLTDKQVSSHYLVPAV 62 Query: 78 PPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPF 137 PPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPF Sbjct: 63 PPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPF 122 Query: 138 EPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDA 197 EPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDA Sbjct: 123 EPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDA 182 Query: 198 QRVNFYLAGRAPHTPVDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGE 257 QRVNFYLAGRAPHTPVDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGE Sbjct: 183 QRVNFYLAGRAPHTPVDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGE 242 Query: 258 ADAETQAIAEALLEKYGQD 276 ADAETQAIAEALLEKYGQD Sbjct: 243 ADAETQAIAEALLEKYGQD 261 >4BPA-A nrPDB Length = 259 Score = 386 bits (991), Expect = e-108, Method: Composition-based stats. Identities = 113/270 (41%), Positives = 154/270 (57%), Gaps = 15/270 (5%) Query: 1 MRRFFWLVAAALLLAGCAGEKGIVEKEGYQLDTRRQAQAAYPRIKVLVIHYTADDFDSSL 60 MR F L LLAGC+ G +L+T + R++ +V+HYT+ D SL Sbjct: 1 MRSFVLLAFTLSLLAGCS--------SGPRLNTDYTSANQDSRVQFIVLHYTSTDLPHSL 52 Query: 61 ATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIEL 120 LT VS+HYL+ P +++LV E AWHAG+S W+G T LN TSIGIE+ Sbjct: 53 GILTHGGVSAHYLIGDDEP-----ATVYRLVDENRRAWHAGVSEWQGRTWLNATSIGIEI 107 Query: 121 ENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPL 180 N+G++ + + + PF AQIQALIPL KDI R+ I P+ ++ H+DIAP RK DPGPL Sbjct: 108 VNQGYRDTPQGRVWYPFSEAQIQALIPLLKDIAKRHGITPDRIIGHSDIAPGRKVDPGPL 167 Query: 181 FPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASLLELLARYGYDVK-PDMTPREQR 239 FPW++LA G+ WP + LA P D + LAR+GY V ++ R Sbjct: 168 FPWKRLADAGLVPWPKPGELARRLAELNGQLP-DVRWFQQQLARHGYLVPQTGELEKDTR 226 Query: 240 RVIMAFQMHFRPTLYNGEADAETQAIAEAL 269 VI AFQM +RP ++GE D ET A+ A+ Sbjct: 227 DVIGAFQMKYRPARFDGEPDLETAALLLAV 256 >4BXE-A nrPDB Length = 255 Score = 335 bits (858), Expect = 2e-92, Method: Composition-based stats. Identities = 109/248 (43%), Positives = 140/248 (56%), Gaps = 7/248 (2%) Query: 32 DTRRQAQAAYPRIKVLVIHYTADDFDSSLATLTDKQVSSHYLVPA-VPPRYNGK----PR 86 ++ R R++ LV+HYTA DF +S+ LT S+HYL+PA P Y R Sbjct: 7 NSYRTTTPYGKRVRFLVLHYTALDFAASVKALTTGAASAHYLIPAPHDPSYKAAGFKGQR 66 Query: 87 IWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPFEPAQIQALI 146 I+ LV E++ AWHAG+S W LNDTSIGIE+ N + GV F +E +QI AL Sbjct: 67 IFNLVAEEDRAWHAGVSGWARRDNLNDTSIGIEIVNLA-RDDDGVFTFPDYERSQINALK 125 Query: 147 PLAKDIIARYH-IKPENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDAQRVNFYLA 205 LAK+I+ RY + P+NVV H+DIA RK DPGP PW++L + GIGAW D + Y Sbjct: 126 QLAKNILQRYPDMTPKNVVGHSDIAVGRKSDPGPKLPWKELYEAGIGAWYDDATRDRYRE 185 Query: 206 GRAPHTPVDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGEADAETQAI 265 G A LLE YGY + + ++ AFQMHFRP Y+G D ET AI Sbjct: 186 GFERDGLPPRADLLEAFRLYGYALPATVDDAYFASLLRAFQMHFRPENYDGALDVETAAI 245 Query: 266 AEALLEKY 273 AL EKY Sbjct: 246 LYALNEKY 253 >2Y2E-A nrPDB Length = 187 Score = 160 bits (404), Expect = 8e-40, Method: Composition-based stats. Identities = 50/127 (39%), Positives = 68/127 (53%), Gaps = 16/127 (12%) Query: 60 LATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIE 119 A + +VS+H L+ R +G+ I Q VP + AWHAG+S+++G R ND SIGIE Sbjct: 64 FAGIAHLRVSAHCLI-----RRDGE--IVQYVPFDKRAWHAGVSSYQGRERCNDFSIGIE 116 Query: 120 LENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGP 179 LE G A + AQ Q L + +I RY N+ H +IAP+RK DPGP Sbjct: 117 LE--------GTDTLA-YTDAQYQQLAAVTNALITRYPAIANNMTGHCNIAPERKTDPGP 167 Query: 180 LFPWQQL 186 F W + Sbjct: 168 SFDWARF 174 >3RDR-A nrPDB Length = 157 Score = 37.8 bits (86), Expect = 0.004, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 42/106 (39%), Gaps = 16/106 (15%) Query: 87 IWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPFEPAQIQALI 146 I+Q +P E WHAG G N SIGIE+ F A A Sbjct: 68 IYQHLPLNENGWHAGDGNGSG----NRASIGIEICENADGD---------FAKATANA-Q 113 Query: 147 PLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFPWQQLAQQGIG 192 L K ++A ++I NVV H + K+ P L + GIG Sbjct: 114 WLIKTLMAEHNISLANVVPHKYWS--GKECPRKLLDTWDSFKAGIG 157 >1LBA-A nrPDB Length = 146 Score = 35.1 bits (79), Expect = 0.037, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 9/78 (11%) Query: 112 NDTSIGIELENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAP 171 N SIG+ L K+ A F PAQ+Q+L L ++A+Y AH ++AP Sbjct: 69 NHNSIGVCLVGGI---DDKGKFDANFTPAQMQSLRSLLVTLLAKYEGAVLR--AHHEVAP 123 Query: 172 QRKDDPGPLFPWQQLAQQ 189 + P F ++ ++ Sbjct: 124 K----ACPSFDLKRWWEK 137 >1TXD-A nrPDB Length = 385 Score = 31.3 bits (69), Expect = 0.42, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 40/106 (37%), Gaps = 11/106 (10%) Query: 80 RYNGKPRIWQLVPEQELAWHAGISA----WRGATRLNDTSIGIELENRGWQKSAGVKYFA 135 R + + + E L W +G AT ++ +E+ +K + + F Sbjct: 90 RKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFV 149 Query: 136 PFEPA-------QIQALIPLAKDIIARYHIKPENVVAHADIAPQRK 174 + Q++ +IP + +Y + +N+ + + +R+ Sbjct: 150 QDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYTEWPTERE 195 >1PGJ-A nrPDB Length = 478 Score = 30.5 bits (67), Expect = 0.75, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 2/109 (1%) Query: 49 IHYTADDFDSSLATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGISAWRGA 108 +H + +++AT + YL+ + + P I L+ + AG+ +R Sbjct: 354 VHNFGLNLPATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMCAFQTEIRAGLQNYRDM 413 Query: 109 TRLNDTSIGIELENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157 L + + + + + F P + L+ L +D+ R+ Sbjct: 414 VALITSKLEVSIPVLSASLNYVTAMFTP--TLKYGQLVSLQRDVFGRHG 460 >2VYN-D nrPDB Length = 334 Score = 30.1 bits (66), Expect = 0.93, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 36/109 (33%), Gaps = 12/109 (11%) Query: 128 SAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVA-HADIAPQRKDDPGPLFPWQ-- 184 + G L PLAK I R+ I + HA A Q+ D W+ Sbjct: 138 NPGSMTVVSNASCTTNCLAPLAKVIHERFGIVEGLMTTVHAYTATQKTVDGPSKKDWRGG 197 Query: 185 QLAQQGIGAWPDAQ---------RVNFYLAGRAPHTPVDTASLLELLAR 224 + A Q I +N L G A P S+++L R Sbjct: 198 RGAHQNIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCR 246 >6H7F-A nrPDB Length = 706 Score = 30.1 bits (66), Expect = 0.99, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 6/123 (4%) Query: 120 LENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVA--HADIAPQRKDDP 177 L ++ + ++ V + + L + + + D AP +P Sbjct: 442 LRHQTVKATSSVNTLPENAKSATTPGVALLIKATDKISVYANYIEGLTKGDQAPATASNP 501 Query: 178 GPLFPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASLLELLARYGYDVKPDMTPRE 237 G +FP Q+ QQ +G D L+ P +L+ ++ ++ E Sbjct: 502 GEIFPPQKTKQQELGLKVDLGTFAHTLSAFEITKPSSYLDPSKLVN----NLPTFVSDGE 557 Query: 238 QRR 240 QR Sbjct: 558 QRN 560 >4QLB-A nrPDB Length = 674 Score = 29.4 bits (64), Expect = 1.9, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%) Query: 197 AQRVNFYLAGRAPHTPVDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNG 256 + + F+ AGR + +E LAR + +K PR ++AF ++ P Sbjct: 341 DKTLYFFTAGRYEFSNKGGDMFIESLARLNHYLKTTSDPRHMGVTVVAFLIYPAPANSFN 400 Query: 257 EADAETQAIAEALLE 271 + QA+ + L E Sbjct: 401 VESLKGQAVTKQLKE 415 >2OG6-A nrPDB Length = 357 Score = 29.0 bits (63), Expect = 2.6, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 6/63 (9%) Query: 170 APQRKDDPGPLFPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASLLELLARYGYDV 229 A R DD W + A+ AWP + LAG + D A +L L + Sbjct: 59 ATGRPDDA----EWVEAARNAWHAWP--ATLRRDLAGFRRDSGPDGAIVLRGLPVDSMGL 112 Query: 230 KPD 232 P Sbjct: 113 PPT 115 >1V4A-A nrPDB Length = 440 Score = 28.2 bits (61), Expect = 4.4, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 3/87 (3%) Query: 138 EPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFPWQQLA---QQGIGAW 194 EP ++L AK ++ ++V+AH + + + P WQ A Q+ + Sbjct: 21 EPLAEESLSAQAKSVLTFSDFVQDSVIAHPEWLTELESQPPQADEWQHYAAWLQEALCNV 80 Query: 195 PDAQRVNFYLAGRAPHTPVDTASLLEL 221 D + L V A L Sbjct: 81 SDEAGLMRELRLFRRRIMVRIAWAQTL 107 >4OVQ-A nrPDB Length = 325 Score = 27.0 bits (58), Expect = 8.0, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Query: 186 LAQQGIGA--WPDAQRVNFYLAGRAPHTPVDT 215 +A++GI W DA +FY + +TP D Sbjct: 130 MAEKGIQPLAWYDAGARSFYNGEKPINTPADV 161 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.309 0.126 0.342 Lambda K H 0.267 0.0382 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,821,091 Number of Sequences: 36641 Number of extensions: 366365 Number of successful extensions: 1033 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 29 Number of HSP's that attempted gapping in prelim test: 1006 Number of HSP's gapped (non-prelim): 41 length of query: 276 length of database: 10,336,785 effective HSP length: 96 effective length of query: 180 effective length of database: 6,819,249 effective search space: 1227464820 effective search space used: 1227464820 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 58 (27.1 bits)