BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P70444
         (195 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

1DDB-A nrPDB                                                          403   e-113
2BID-A nrPDB                                                          211   2e-55
2M5I-A nrPDB                                                          155   1e-38
4BD6-A nrPDB                                                           34   0.036
5W61-A nrPDB                                                           34   0.047
5W63-A nrPDB                                                           33   0.067
5W5Z-A nrPDB                                                           33   0.072
5W62-A nrPDB                                                           29   1.1  
1T5C-A nrPDB                                                           28   3.5  
2DV6-A nrPDB                                                           27   5.0  
4HAC-B nrPDB                                                           27   6.7  
2PUP-A nrPDB                                                           26   9.7  

>1DDB-A nrPDB
          Length = 195

 Score =  403 bits (1036), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 194/195 (99%), Positives = 195/195 (100%)

Query: 1   MDSEVSNGSGLGAEHITDLLVFGFLQSSGCTRQELEVLGRELPVQAYWEADLEDELQTDG 60
           MDSEVSNGSGLGA+HITDLLVFGFLQSSGCTRQELEVLGRELPVQAYWEADLEDELQTDG
Sbjct: 1   MDSEVSNGSGLGAKHITDLLVFGFLQSSGCTRQELEVLGRELPVQAYWEADLEDELQTDG 60

Query: 61  SQASRSFNQGRIEPDSESQEEIIHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMNGSLSE 120
           SQASRSFNQGRIEPDSESQEEIIHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMNGSLSE
Sbjct: 61  SQASRSFNQGRIEPDSESQEEIIHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMNGSLSE 120

Query: 121 EDKRNCLAKALDEVKTAFPRDMENDKAMLIMTMLLAKKVASHAPSLLRDVFHTTVNFINQ 180
           EDKRNCLAKALDEVKTAFPRDMENDKAMLIMTMLLAKKVASHAPSLLRDVFHTTVNFINQ
Sbjct: 121 EDKRNCLAKALDEVKTAFPRDMENDKAMLIMTMLLAKKVASHAPSLLRDVFHTTVNFINQ 180

Query: 181 NLFSYVRNLVRNEMD 195
           NLFSYVRNLVRNEMD
Sbjct: 181 NLFSYVRNLVRNEMD 195


>2BID-A nrPDB
          Length = 197

 Score =  211 bits (537), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 128/200 (64%), Positives = 150/200 (75%), Gaps = 10/200 (5%)

Query: 1   MDSEVSNGSGLGAEHITDLLVFGFLQSSGCT----RQELEVLGRELPVQA-YWEADLEDE 55
           MD EV+NGS L  E IT+LLVFGFLQS  C+    R+EL+ LG ELPV A  WE    DE
Sbjct: 3   MDCEVNNGSSLRDECITNLLVFGFLQS--CSDNSFRRELDALGHELPVLAPQWEG--YDE 58

Query: 56  LQTDGSQASRSFNQGRIEPDSESQEEIIHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMN 115
           LQTDG+++S S   GRIE DSESQE+II NIARHLAQ+GD MD +I P LV  LA Q  N
Sbjct: 59  LQTDGNRSSHS-RLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRN 117

Query: 116 GSLSEEDKRNCLAKALDEVKTAFPRDMENDKAMLIMTMLLAKKVASHAPSLLRDVFHTTV 175
            S SEED+   LA AL+++  A+PRDME +K ML++ +LLAKKVASH PSLLRDVFHTTV
Sbjct: 118 TSRSEEDRNRDLATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTV 177

Query: 176 NFINQNLFSYVRNLVRNEMD 195
           NFINQNL +YVR+L RN MD
Sbjct: 178 NFINQNLRTYVRSLARNGMD 197


>2M5I-A nrPDB
          Length = 135

 Score =  155 bits (392), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/126 (68%), Positives = 100/126 (79%)

Query: 70  GRIEPDSESQEEIIHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMNGSLSEEDKRNCLAK 129
           GRIE DSESQE+II NIARHLAQ+GD MD +I P LV  LA Q  N S SEED+   LA 
Sbjct: 10  GRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRDLAT 69

Query: 130 ALDEVKTAFPRDMENDKAMLIMTMLLAKKVASHAPSLLRDVFHTTVNFINQNLFSYVRNL 189
           AL+++  A+PRDME +K ML++ +LLAKKVASH PSLLRDVFHTTVNFINQNL +YVR+L
Sbjct: 70  ALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYVRSL 129

Query: 190 VRNEMD 195
            RN MD
Sbjct: 130 ARNGMD 135


>4BD6-A nrPDB
          Length = 174

 Score = 34.3 bits (77), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 23/115 (20%), Positives = 54/115 (46%), Gaps = 9/115 (7%)

Query: 75  DSESQEEIIHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMNGSLSEEDKRNCLAKALDEV 134
           D   Q+     ++  L +IGDE+D N++  L R +AA      +  +  R    +   ++
Sbjct: 48  DPVPQDASTKKLSESLKRIGDELDSNME--LQRMIAA------VDTDSPREVFFRVAADM 99

Query: 135 KTAFPRDMENDKAMLIM-TMLLAKKVASHAPSLLRDVFHTTVNFINQNLFSYVRN 188
            +    +     A+    + L+ K +++  P L+R +   T++F+ + L  ++++
Sbjct: 100 FSDGNFNWGRVVALFYFASKLVLKALSTKVPELIRTIMGWTLDFLRERLLGWIQD 154


>5W61-A nrPDB
          Length = 194

 Score = 33.9 bits (76), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 23/115 (20%), Positives = 54/115 (46%), Gaps = 9/115 (7%)

Query: 75  DSESQEEIIHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMNGSLSEEDKRNCLAKALDEV 134
           D   Q+     ++  L +IGDE+D N++  L R +AA      +  +  R    +   ++
Sbjct: 48  DPVPQDASTKKLSESLKRIGDELDSNME--LQRMIAA------VDTDSPREVFFRVAADM 99

Query: 135 KTAFPRDMENDKAMLIM-TMLLAKKVASHAPSLLRDVFHTTVNFINQNLFSYVRN 188
            +    +     A+    + L+ K +++  P L+R +   T++F+ + L  ++++
Sbjct: 100 FSDGNFNWGRVVALFYFASKLVLKALSTKVPELIRTIMGWTLDFLRERLLGWIQD 154


>5W63-A nrPDB
          Length = 189

 Score = 33.5 bits (75), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 23/113 (20%), Positives = 56/113 (49%), Gaps = 9/113 (7%)

Query: 76  SESQEEIIHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMNGSLSEEDKRNCLAKALDEVK 135
           SE  +     +A++L QIGDE+D+N+   L R LA   +      +  +    K   E+ 
Sbjct: 48  SELSDPTHKKLAQYLQQIGDELDNNVD--LQRMLADSAL------QPTKEVFVKVAREIF 99

Query: 136 TAFPRDMENDKAMLIM-TMLLAKKVASHAPSLLRDVFHTTVNFINQNLFSYVR 187
           +    +     A+    + L+ + + +  P ++R + + T++++ +++ +++R
Sbjct: 100 SDGKFNWGRVVALFYFASRLVIEALLTKIPDIIRTIINWTLDYLREHVINWIR 152


>5W5Z-A nrPDB
          Length = 163

 Score = 33.1 bits (74), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 23/115 (20%), Positives = 54/115 (46%), Gaps = 9/115 (7%)

Query: 75  DSESQEEIIHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMNGSLSEEDKRNCLAKALDEV 134
           D   Q+     ++  L +IGDE+D N++  L R +AA      +  +  R    +   ++
Sbjct: 17  DPVPQDASTKKLSESLKRIGDELDSNME--LQRMIAA------VDTDSPREVFFRVAADM 68

Query: 135 KTAFPRDMENDKAMLIM-TMLLAKKVASHAPSLLRDVFHTTVNFINQNLFSYVRN 188
            +    +     A+    + L+ K +++  P L+R +   T++F+ + L  ++++
Sbjct: 69  FSDGNFNWGRVVALFYFASKLVLKALSTKVPELIRTIMGWTLDFLRERLLGWIQD 123


>5W62-A nrPDB
          Length = 192

 Score = 29.3 bits (64), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/111 (18%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 79  QEEIIHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMNGSLSEEDKRNCLAKALDEVKTAF 138
           Q+     ++  L +IGDE+D N++         Q M   +  +  R    +   ++    
Sbjct: 52  QDASTKKLSESLRRIGDELDSNME--------LQRMIADVDTDSPREVFFRVAADMFADG 103

Query: 139 PRDMENDKAMLIM-TMLLAKKVASHAPSLLRDVFHTTVNFINQNLFSYVRN 188
             +     A+    + L+ K +++  P L+R +   T++F+ + L  ++++
Sbjct: 104 NFNWGRVVALFYFASKLVLKALSTKVPELIRTIMGWTLDFLRERLLVWIQD 154


>1T5C-A nrPDB
          Length = 349

 Score = 27.7 bits (60), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 45 QAYWEADLEDELQTDGSQASRSFNQGRIEPDSESQEEIIHNIA 87
          Q YW+ D     Q DG   S+SFN  R+   +E+ + +   IA
Sbjct: 27 QVYWKTDNNVIYQVDG---SKSFNFDRVFHGNETTKNVYEEIA 66


>2DV6-A nrPDB
          Length = 447

 Score = 26.9 bits (58), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 11/70 (15%)

Query: 64  SRSFNQGRIEPDSESQEEIIHNIARHLAQ-------IGDEMDHNIQPTLV----RQLAAQ 112
           S+S  + + +P + +   ++  +   +A+       +G ++DH I PTLV      +   
Sbjct: 9   SKSHEEEKTDPTAGAHAPVVFTLRTGIAEGRMVYIGVGGDIDHKINPTLVVHEGETVQVN 68

Query: 113 FMNGSLSEED 122
            +NG  ++ D
Sbjct: 69  LVNGEGAQHD 78


>4HAC-B nrPDB
          Length = 321

 Score = 26.6 bits (57), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 1   MDSEVSNGSGLGAEHITDLLVFGFLQ---SSGCTRQELEVLGRELPVQAYWEADLED 54
           +DS++  GSGLG+     +   G L      G + QE+  LG E+ ++    A   D
Sbjct: 102 VDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGAASPTD 158


>2PUP-A nrPDB
          Length = 397

 Score = 26.2 bits (56), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 98  DHNIQPTLVRQLAAQFMNGSLSEEDKRNCLAKA--------LDEVKTAFPRDMENDKAML 149
           D+ ++P + +QL  QF N  L +  +R               +E    F   + N+ ++ 
Sbjct: 153 DYALEPKVKKQLVKQFTNPELCDITERLVFTDPFFDHDTNDFEEELRPFVEKLWNNDSVK 212

Query: 150 IMTMLLAKKVASHAPSLLRDVFHTTVNFINQN 181
           I    L K   + A +L+    HT   F +++
Sbjct: 213 IEAAKLKKSFLTSAETLIHGDLHTGSIFASEH 244


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

1DDB-A nrPDB                                                          347   2e-96
2BID-A nrPDB                                                          281   2e-76
2M5I-A nrPDB                                                          199   9e-52

Sequences not found previously or not previously below threshold:

4D0P-A nrPDB                                                           33   0.061
4D10-D nrPDB                                                           33   0.064
5W63-A nrPDB                                                           31   0.39 
4HAC-B nrPDB                                                           30   0.58 
6C26-C nrPDB                                                           30   0.59 
1BWO-A nrPDB                                                           30   0.97 
1W9C-A nrPDB                                                           29   1.3  
2AHV-A nrPDB                                                           29   1.6  
5W61-A nrPDB                                                           28   1.9  
2DWP-A nrPDB                                                           28   1.9  
5W5Z-A nrPDB                                                           28   1.9  
3A1K-A nrPDB                                                           28   2.0  
4BD6-A nrPDB                                                           28   2.8  
1W27-A nrPDB                                                           28   3.0  
4XJN-A nrPDB                                                           27   4.5  
5ZIZ-A nrPDB                                                           27   4.9  
5OY5-A nrPDB                                                           27   5.9  
4GW9-A nrPDB                                                           26   8.5  
5W62-A nrPDB                                                           26   8.8  
4Z54-A nrPDB                                                           26   9.7  


CONVERGED!
>1DDB-A nrPDB
          Length = 195

 Score =  347 bits (889), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 194/195 (99%), Positives = 195/195 (100%)

Query: 1   MDSEVSNGSGLGAEHITDLLVFGFLQSSGCTRQELEVLGRELPVQAYWEADLEDELQTDG 60
           MDSEVSNGSGLGA+HITDLLVFGFLQSSGCTRQELEVLGRELPVQAYWEADLEDELQTDG
Sbjct: 1   MDSEVSNGSGLGAKHITDLLVFGFLQSSGCTRQELEVLGRELPVQAYWEADLEDELQTDG 60

Query: 61  SQASRSFNQGRIEPDSESQEEIIHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMNGSLSE 120
           SQASRSFNQGRIEPDSESQEEIIHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMNGSLSE
Sbjct: 61  SQASRSFNQGRIEPDSESQEEIIHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMNGSLSE 120

Query: 121 EDKRNCLAKALDEVKTAFPRDMENDKAMLIMTMLLAKKVASHAPSLLRDVFHTTVNFINQ 180
           EDKRNCLAKALDEVKTAFPRDMENDKAMLIMTMLLAKKVASHAPSLLRDVFHTTVNFINQ
Sbjct: 121 EDKRNCLAKALDEVKTAFPRDMENDKAMLIMTMLLAKKVASHAPSLLRDVFHTTVNFINQ 180

Query: 181 NLFSYVRNLVRNEMD 195
           NLFSYVRNLVRNEMD
Sbjct: 181 NLFSYVRNLVRNEMD 195


>2BID-A nrPDB
          Length = 197

 Score =  281 bits (718), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 127/198 (64%), Positives = 148/198 (74%), Gaps = 6/198 (3%)

Query: 1   MDSEVSNGSGLGAEHITDLLVFGFLQS--SGCTRQELEVLGRELPVQA-YWEADLEDELQ 57
           MD EV+NGS L  E IT+LLVFGFLQS      R+EL+ LG ELPV A  WE    DELQ
Sbjct: 3   MDCEVNNGSSLRDECITNLLVFGFLQSCSDNSFRRELDALGHELPVLAPQWEG--YDELQ 60

Query: 58  TDGSQASRSFNQGRIEPDSESQEEIIHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMNGS 117
           TDG+++S S   GRIE DSESQE+II NIARHLAQ+GD MD +I P LV  LA Q  N S
Sbjct: 61  TDGNRSSHS-RLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTS 119

Query: 118 LSEEDKRNCLAKALDEVKTAFPRDMENDKAMLIMTMLLAKKVASHAPSLLRDVFHTTVNF 177
            SEED+   LA AL+++  A+PRDME +K ML++ +LLAKKVASH PSLLRDVFHTTVNF
Sbjct: 120 RSEEDRNRDLATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNF 179

Query: 178 INQNLFSYVRNLVRNEMD 195
           INQNL +YVR+L RN MD
Sbjct: 180 INQNLRTYVRSLARNGMD 197


>2M5I-A nrPDB
          Length = 135

 Score =  199 bits (505), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 89/136 (65%), Positives = 106/136 (77%), Gaps = 1/136 (0%)

Query: 60  GSQASRSFNQGRIEPDSESQEEIIHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMNGSLS 119
           G+++S S   GRIE DSESQE+II NIARHLAQ+GD MD +I P LV  LA Q  N S S
Sbjct: 1   GNRSSHS-RLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRS 59

Query: 120 EEDKRNCLAKALDEVKTAFPRDMENDKAMLIMTMLLAKKVASHAPSLLRDVFHTTVNFIN 179
           EED+   LA AL+++  A+PRDME +K ML++ +LLAKKVASH PSLLRDVFHTTVNFIN
Sbjct: 60  EEDRNRDLATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFIN 119

Query: 180 QNLFSYVRNLVRNEMD 195
           QNL +YVR+L RN MD
Sbjct: 120 QNLRTYVRSLARNGMD 135


>4D0P-A nrPDB
          Length = 387

 Score = 33.5 bits (75), Expect = 0.061,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 15/100 (15%)

Query: 106 VRQLAAQFMNGSLSEED----KRNCLAKALD-------EVKTAFPRDMENDKAMLIMTML 154
           VRQ  AQ MN S S +D     R  L KA+        E   AF   M N+   L+++  
Sbjct: 29  VRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQ 88

Query: 155 LAKKVASHAPSL----LRDVFHTTVNFINQNLFSYVRNLV 190
           L     +H P+L     ++++H T+  I   + S+   + 
Sbjct: 89  LLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVA 128


>4D10-D nrPDB
          Length = 410

 Score = 33.5 bits (75), Expect = 0.064,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 15/100 (15%)

Query: 106 VRQLAAQFMNGSLSEED----KRNCLAKALD-------EVKTAFPRDMENDKAMLIMTML 154
           VRQ  AQ MN S S +D     R  L KA+        E   AF   M N+   L+++  
Sbjct: 9   VRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQ 68

Query: 155 LAKKVASHAPSL----LRDVFHTTVNFINQNLFSYVRNLV 190
           L     +H P+L     ++++H T+  I   + S+   + 
Sbjct: 69  LLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVA 108


>5W63-A nrPDB
          Length = 189

 Score = 30.8 bits (68), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 53/113 (46%), Gaps = 9/113 (7%)

Query: 76  SESQEEIIHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMNGSLSEEDKRNCLAKALDEVK 135
           SE  +     +A++L QIGDE+D+N+          Q M    + +  +    K   E+ 
Sbjct: 48  SELSDPTHKKLAQYLQQIGDELDNNVD--------LQRMLADSALQPTKEVFVKVAREIF 99

Query: 136 TAFPRDMENDKAMLIMT-MLLAKKVASHAPSLLRDVFHTTVNFINQNLFSYVR 187
           +    +     A+      L+ + + +  P ++R + + T++++ +++ +++R
Sbjct: 100 SDGKFNWGRVVALFYFASRLVIEALLTKIPDIIRTIINWTLDYLREHVINWIR 152


>4HAC-B nrPDB
          Length = 321

 Score = 30.0 bits (66), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 1   MDSEVSNGSGLGAEHITDLLVFGFLQSS---GCTRQELEVLGRELPVQAYWEADLED 54
           +DS++  GSGLG+     +   G L      G + QE+  LG E+ ++    A   D
Sbjct: 102 VDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGAASPTD 158


>6C26-C nrPDB
          Length = 286

 Score = 30.0 bits (66), Expect = 0.59,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 115 NGSLSEEDKRNCLAKALDEVKTAFPRDMENDKAMLIMTMLLAKKVASHAPSLLRDVFHTT 174
           NG LS    R  LAK    +     R  E  KA    T++LA   A    +L R++    
Sbjct: 103 NGKLSMYKYRIDLAKLDAALLQEASRSPEPIKA----TLILASSTAKPKENLFREILQLN 158

Query: 175 VNF 177
           +NF
Sbjct: 159 LNF 161


>1BWO-A nrPDB
          Length = 90

 Score = 29.6 bits (65), Expect = 0.97,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 43  PVQAYWEADLEDELQT-DGSQASRSFNQGRIEPDSESQEEIIHNIARHLAQIGDEMDHNI 101
           P  +Y +       Q  DG +     NQ R + D +S    +  IAR +  + ++   +I
Sbjct: 12  PCLSYVQGGPGPSGQCCDGVKNLH--NQARSQSDRQSACNCLKGIARGIHNLNEDNARSI 69

Query: 102 QP 103
            P
Sbjct: 70  PP 71


>1W9C-A nrPDB
          Length = 321

 Score = 29.2 bits (64), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 131 LDEVKTAFPRDM------ENDKAMLIMTMLLAKKVASHAPSLLRDVFHTTVNFINQNLFS 184
           LD V   + R++      E    M I+   L   + +  P +   VF  T+N IN++   
Sbjct: 75  LDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEE 134

Query: 185 Y 185
           Y
Sbjct: 135 Y 135


>2AHV-A nrPDB
          Length = 531

 Score = 28.9 bits (63), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 74  PDSESQEEIIHNIAR-HLAQIGDEMDHNIQPTLVRQLAAQFMNGSLSEEDKRNCLAKALD 132
            D   Q +   N++      +GD  D  I P     L    + G   +  + + LA+   
Sbjct: 51  ADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISDLAEQNK 110

Query: 133 EVKTAFPRDMENDKAMLIMTMLLAKKVASHAPSLLRDV 170
            +   +P+         ++T  L +  A+H P ++ D+
Sbjct: 111 IIAYNYPQG--------VLTQTL-RAAAAHQPGIISDI 139


>5W61-A nrPDB
          Length = 194

 Score = 28.5 bits (62), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 51/115 (44%), Gaps = 9/115 (7%)

Query: 75  DSESQEEIIHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMNGSLSEEDKRNCLAKALDEV 134
           D   Q+     ++  L +IGDE+D N++         Q M  ++  +  R    +   ++
Sbjct: 48  DPVPQDASTKKLSESLKRIGDELDSNME--------LQRMIAAVDTDSPREVFFRVAADM 99

Query: 135 KTAFPRDMENDKAMLIMT-MLLAKKVASHAPSLLRDVFHTTVNFINQNLFSYVRN 188
            +    +     A+      L+ K +++  P L+R +   T++F+ + L  ++++
Sbjct: 100 FSDGNFNWGRVVALFYFASKLVLKALSTKVPELIRTIMGWTLDFLRERLLGWIQD 154


>2DWP-A nrPDB
          Length = 520

 Score = 28.5 bits (62), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 18/43 (41%)

Query: 83  IHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMNGSLSEEDKRN 125
           I++   H+A     +   + P +  QL  Q M GS S  D   
Sbjct: 476 INSFEEHVASTSAALPSCLPPEVPTQLPGQNMKGSRSSADSSR 518


>5W5Z-A nrPDB
          Length = 163

 Score = 28.5 bits (62), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 51/115 (44%), Gaps = 9/115 (7%)

Query: 75  DSESQEEIIHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMNGSLSEEDKRNCLAKALDEV 134
           D   Q+     ++  L +IGDE+D N++         Q M  ++  +  R    +   ++
Sbjct: 17  DPVPQDASTKKLSESLKRIGDELDSNME--------LQRMIAAVDTDSPREVFFRVAADM 68

Query: 135 KTAFPRDMENDKAMLIMT-MLLAKKVASHAPSLLRDVFHTTVNFINQNLFSYVRN 188
            +    +     A+      L+ K +++  P L+R +   T++F+ + L  ++++
Sbjct: 69  FSDGNFNWGRVVALFYFASKLVLKALSTKVPELIRTIMGWTLDFLRERLLGWIQD 123


>3A1K-A nrPDB
          Length = 521

 Score = 28.5 bits (62), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 100 NIQPTLVRQLAAQFMNGSLSEEDKRNC-LAKALDEVKTAFPRDMEN 144
           ++   LV  L    M      +D     + +A ++++ AFP   E 
Sbjct: 465 SVPAGLVNGLPVGMMITGRHFDDATVLRVGRAFEKLRGAFPTPAER 510


>4BD6-A nrPDB
          Length = 174

 Score = 28.1 bits (61), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 51/115 (44%), Gaps = 9/115 (7%)

Query: 75  DSESQEEIIHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMNGSLSEEDKRNCLAKALDEV 134
           D   Q+     ++  L +IGDE+D N++         Q M  ++  +  R    +   ++
Sbjct: 48  DPVPQDASTKKLSESLKRIGDELDSNME--------LQRMIAAVDTDSPREVFFRVAADM 99

Query: 135 KTAFPRDMENDKAMLIMT-MLLAKKVASHAPSLLRDVFHTTVNFINQNLFSYVRN 188
            +    +     A+      L+ K +++  P L+R +   T++F+ + L  ++++
Sbjct: 100 FSDGNFNWGRVVALFYFASKLVLKALSTKVPELIRTIMGWTLDFLRERLLGWIQD 154


>1W27-A nrPDB
          Length = 716

 Score = 27.7 bits (60), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 12/90 (13%)

Query: 70  GRIEPDSESQEEIIHNIARH--LAQIGDEMDHNIQPTLVRQLAAQFMNGSLSEEDKRNCL 127
           G + P    +++++  + R    A I D         L+++L    +  +L   D    L
Sbjct: 554 GELHPSRFCEKDLLRVVDREYIFAYIDDPCSATYP--LMQKLRQTLVEHALKNGDNERNL 611

Query: 128 AKAL--------DEVKTAFPRDMENDKAML 149
           + ++        DE+K   P+++E+ +A L
Sbjct: 612 STSIFQKIATFEDELKALLPKEVESARAAL 641


>4XJN-A nrPDB
          Length = 525

 Score = 27.3 bits (59), Expect = 4.5,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 9/101 (8%)

Query: 100 NIQPTLVRQLAAQFMNGSLSEEDKRNCLAKALDEVKTAFPRDMENDKAMLIM------TM 153
            I PT ++ +   F+  S + E +   L   L  V +   RD     A+L M      TM
Sbjct: 41  TIPPTTLKPVIRVFILTSNNPELRSRLLLFCLRIVLSNGARDSHRFGALLTMFSLPSATM 100

Query: 154 LLAKKVASHAPSLLRDVFHTTVNFINQNLFSYVRNLVRNEM 194
           L   K+A  +P    D+    ++   +  F  + N  R+ M
Sbjct: 101 LNHVKLADQSPE--ADIERVEIDGFEEGSFRLIPN-ARSGM 138


>5ZIZ-A nrPDB
          Length = 323

 Score = 26.9 bits (58), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 6/35 (17%)

Query: 90  LAQIGDEMDHNIQPTLVRQLAAQFMNGSLSEEDKR 124
           LAQ GD+M        V +LA Q  N SLS +D++
Sbjct: 41  LAQAGDKMAR------VTELAVQSNNSSLSPDDRK 69


>5OY5-A nrPDB
          Length = 525

 Score = 26.9 bits (58), Expect = 5.9,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 56/151 (37%), Gaps = 19/151 (12%)

Query: 5   VSNGSGLGAEHITDLLVFGFLQSSGCTRQELEVLGRELPVQAYWEADLEDE--LQTDGSQ 62
           V  GS + A H +    FG    S C R+E+ + G   P  A       D   +Q   + 
Sbjct: 15  VPRGSHMVAGHASGSPAFGTADLSNCEREEIHLAGSIQPHGALLVVSEPDHRIIQASAN- 73

Query: 63  ASRSFNQGRI--EPDSESQEEIIHNIARHLAQIGDEMDHNI------QPTLVRQLAAQFM 114
           A+   N G +   P +E   +++  I  HL    + M   +        T    L  +  
Sbjct: 74  AAEFLNLGSVLGVPLAEIDGDLLIKILPHLDPTAEGMPVAVRCRIGNPSTEYDGLMHRPP 133

Query: 115 NGSLSEE--------DKRNCLAKALDEVKTA 137
            G L  E        D    LA AL+ ++TA
Sbjct: 134 EGGLIIELERAGPPIDLSGTLAPALERIRTA 164


>4GW9-A nrPDB
          Length = 655

 Score = 26.2 bits (56), Expect = 8.5,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 56/151 (37%), Gaps = 19/151 (12%)

Query: 5   VSNGSGLGAEHITDLLVFGFLQSSGCTRQELEVLGRELPVQAYWEADLEDE--LQTDGSQ 62
           V  GS + A H +    FG    S C R+E+ + G   P  A       D   +Q   + 
Sbjct: 15  VPRGSHMVAGHASGSPAFGTADLSNCEREEIHLAGSIQPHGALLVVSEPDHRIIQASAN- 73

Query: 63  ASRSFNQGRI--EPDSESQEEIIHNIARHLAQIGDEMDHNI------QPTLVRQLAAQFM 114
           A+   N G +   P +E   +++  I  HL    + M   +        T    L  +  
Sbjct: 74  AAEFLNLGSVLGVPLAEIDGDLLIKILPHLDPTAEGMPVAVRCRIGNPSTEYDGLMHRPP 133

Query: 115 NGSLSEE--------DKRNCLAKALDEVKTA 137
            G L  E        D    LA AL+ ++TA
Sbjct: 134 EGGLIIELERAGPPIDLSGTLAPALERIRTA 164


>5W62-A nrPDB
          Length = 192

 Score = 26.2 bits (56), Expect = 8.8,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 48/111 (43%), Gaps = 9/111 (8%)

Query: 79  QEEIIHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMNGSLSEEDKRNCLAKALDEVKTAF 138
           Q+     ++  L +IGDE+D N++         Q M   +  +  R    +   ++    
Sbjct: 52  QDASTKKLSESLRRIGDELDSNME--------LQRMIADVDTDSPREVFFRVAADMFADG 103

Query: 139 PRDMENDKAMLIMT-MLLAKKVASHAPSLLRDVFHTTVNFINQNLFSYVRN 188
             +     A+      L+ K +++  P L+R +   T++F+ + L  ++++
Sbjct: 104 NFNWGRVVALFYFASKLVLKALSTKVPELIRTIMGWTLDFLRERLLVWIQD 154


>4Z54-A nrPDB
          Length = 287

 Score = 26.2 bits (56), Expect = 9.7,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 32  RQELEVLGRELPVQAYWEADLEDELQTDGSQASRSFNQGRIEPDSESQ 79
           R+ELEV G E   Q  ++ DLED+ + D  +   S     +  D E Q
Sbjct: 183 RKELEVNGIEFYPQKEFDEDLEDKTENDKIR-QESMPFAVVGSDKEYQ 229


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.312    0.135    0.369 

Lambda     K      H
   0.267   0.0388    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,624,307
Number of Sequences: 36641
Number of extensions: 224388
Number of successful extensions: 932
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 908
Number of HSP's gapped (non-prelim): 52
length of query: 195
length of database: 10,336,785
effective HSP length: 92
effective length of query: 103
effective length of database: 6,965,813
effective search space: 717478739
effective search space used: 717478739
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 56 (26.3 bits)