BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P66948 (487 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 6AIT-A nrPDB 892 0.0 3C37-A nrPDB 127 2e-29 2R4U-A nrPDB 34 0.18 1CT9-A nrPDB 33 0.40 5NJB-B nrPDB 30 1.9 5M65-A nrPDB 30 2.4 2FJR-A nrPDB 29 4.6 4DHI-B nrPDB 29 4.9 >6AIT-A nrPDB Length = 439 Score = 892 bits (2306), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/438 (100%), Positives = 438/438 (100%) Query: 45 SIGQEMQMGDYYVRQLRGSAPLINDPLLTQYINSLGMRLVSHANSVKTPFHFFLINNDEI 104 SIGQEMQMGDYYVRQLRGSAPLINDPLLTQYINSLGMRLVSHANSVKTPFHFFLINNDEI Sbjct: 2 SIGQEMQMGDYYVRQLRGSAPLINDPLLTQYINSLGMRLVSHANSVKTPFHFFLINNDEI 61 Query: 105 NAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVTQRHLARAMEDQQRSAPLTWVGA 164 NAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVTQRHLARAMEDQQRSAPLTWVGA Sbjct: 62 NAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVTQRHLARAMEDQQRSAPLTWVGA 121 Query: 165 LGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRSGFDPQAMPT 224 LGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRSGFDPQAMPT Sbjct: 122 LGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRSGFDPQAMPT 181 Query: 225 FLEKLLDQARYSSRPPEILLTHPLPESRLADARNRANQMRPMVVQSSEDFYLAKARTLGM 284 FLEKLLDQARYSSRPPEILLTHPLPESRLADARNRANQMRPMVVQSSEDFYLAKARTLGM Sbjct: 182 FLEKLLDQARYSSRPPEILLTHPLPESRLADARNRANQMRPMVVQSSEDFYLAKARTLGM 241 Query: 285 YNSGRNQLTSDLLDEWAKGNVRQQRAAQYGRALQAMEANKYDEARKTLQPLLAAEPGNAW 344 YNSGRNQLTSDLLDEWAKGNVRQQRAAQYGRALQAMEANKYDEARKTLQPLLAAEPGNAW Sbjct: 242 YNSGRNQLTSDLLDEWAKGNVRQQRAAQYGRALQAMEANKYDEARKTLQPLLAAEPGNAW 301 Query: 345 YLDLATDIDLGQNKANEAINRLKNARDLRTNPVLQLNLANAYLQGGQPQEAANILNRYTF 404 YLDLATDIDLGQNKANEAINRLKNARDLRTNPVLQLNLANAYLQGGQPQEAANILNRYTF Sbjct: 302 YLDLATDIDLGQNKANEAINRLKNARDLRTNPVLQLNLANAYLQGGQPQEAANILNRYTF 361 Query: 405 NNKDDSNGWDLLAQAEAALNNRDQELAARAEGYALAGRLDQAISLLSSASSQVKLGSLQQ 464 NNKDDSNGWDLLAQAEAALNNRDQELAARAEGYALAGRLDQAISLLSSASSQVKLGSLQQ Sbjct: 362 NNKDDSNGWDLLAQAEAALNNRDQELAARAEGYALAGRLDQAISLLSSASSQVKLGSLQQ 421 Query: 465 ARYDARIDQLRQLQERFK 482 ARYDARIDQLRQLQERFK Sbjct: 422 ARYDARIDQLRQLQERFK 439 >3C37-A nrPDB Length = 253 Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 132/240 (55%), Gaps = 13/240 (5%) Query: 44 LSIGQEMQMGDYYVRQLRGSAPLINDPLLTQYINSLGMRLVSHANSVKTPFHFFLINNDE 103 +SI QE ++G+ + ++ +NDP + +Y++ +G RL+S A +V+ + F ++ +D Sbjct: 14 ISIEQEKELGNKFAVEIEKQQQPVNDPEVQRYVDKVGKRLLSGARAVEFDYVFKVVKDDS 73 Query: 104 INAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVTQRHLARAMEDQQRSAPLTWVG 163 +NAFA GG V +H+ L + +DNE++LA V+AHEI+H RH R M Q+ L Sbjct: 74 VNAFAIPGGRVYVHTGLLKAADNETELAGVLAHEINHAVARHGTRQM-TQEYGYSLVLSL 132 Query: 164 ALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRSGFDPQAMP 223 LG +P +A L G L G + GM+S++++ E +AD +G++ + ++G++P + Sbjct: 133 VLGD------NPNM-LAQLAGQLFG-KAGMMSYSREYENQADFLGVETMYKAGYNPNGLT 184 Query: 224 TFLEKL--LDQARYSSRPPEILLTHPLPESRLADARNRANQMRPMVVQSSE-DFYLAKAR 280 +F +KL +D S THPL R+ + ++ P + E +F K R Sbjct: 185 SFFQKLNAMDGGT-QSNVARFFSTHPLTSERIQRVQAEIAKLPPQRYLTDETEFKKIKGR 243 >2R4U-A nrPDB Length = 485 Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 11/99 (11%) Query: 80 GMRLVSHANSVKTPFHFFLINNDEINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEIS 139 GM H N ++ P+ FF I+ E N G + A Y+D+ + ++ A EI Sbjct: 167 GMFYAHHMNDIQLPWSFFNIHGLEFN------GQISFLKAGLYYADHITAVSPTYAREI- 219 Query: 140 HVTQRHLARAMED--QQRSAPLTWVGALGSILLAMASPQ 176 T+ A ME QQR G L + + SP+ Sbjct: 220 --TEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPE 256 >1CT9-A nrPDB Length = 553 Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 3/70 (4%) Query: 138 ISHVTQRHLARAMEDQQRSAPLTWVGALGSILLAM-ASPQAGMAALTGTLAGTRQGMISF 196 IS +T+++ AR +EDQ+RS W L S + + SP A GT I F Sbjct: 242 ISAITKKYAARRVEDQERSE--AWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHF 299 Query: 197 TQQNEQEADR 206 T Q +A R Sbjct: 300 TVQEGLDAIR 309 >5NJB-B nrPDB Length = 450 Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 79/199 (39%), Gaps = 40/199 (20%) Query: 176 QAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRSG------FDPQAMPTFLEKL 229 + ++ TG TR G + + N A I + R G PQA+ ++ Sbjct: 37 EVAVSKTTGISVSTRYGEVENVEFNSDGALGITVYHQNRKGSASSTDLSPQAIARTVQAA 96 Query: 230 LDQARYSS---------------RPPEILLTHPL---PESRL---ADARNRANQMRPMVV 268 LD ARY+S P++ L HP P+ + A A A Q + Sbjct: 97 LDIARYTSPDPCAGVADKELLAFDAPDLDLFHPAEVSPDEAIELAARAEQAALQADKRIT 156 Query: 269 Q----SSEDFYLAK--ARTLGM---YNSGRNQLTSDLLDEWAKGNVRQQRAAQYGRALQA 319 S Y K + GM Y S R+ L+S ++ E G++ + A GRA+ Sbjct: 157 NTEGGSFNSHYGVKVFGNSHGMLQGYCSTRHSLSSCVIAE-ENGDMERDYAYTIGRAMSD 215 Query: 320 MEANKY---DEARKTLQPL 335 ++ ++ D AR+TL L Sbjct: 216 LQTPEWVGADCARRTLSRL 234 >5M65-A nrPDB Length = 479 Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Query: 416 LAQAEAALNNRDQELAARAEGYALAGRLDQAISLLSSASSQVKLGSLQQARYD 468 LAQ E NN+D + A + Y L LD+ ++ L A VKL L++ + D Sbjct: 412 LAQIELFANNKDSKYAKKV--YVLPKTLDEKVARLHLAKIGVKLTELRKDQAD 462 >2FJR-A nrPDB Length = 189 Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust. Identities = 12/28 (42%), Positives = 17/28 (60%) Query: 413 WDLLAQAEAALNNRDQELAARAEGYALA 440 W L + EA +NNR+ A R EG+ L+ Sbjct: 64 WLLTGEGEAFVNNRESSDAKRIEGFTLS 91 >4DHI-B nrPDB Length = 284 Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 28/60 (46%) Query: 124 SDNESQLASVMAHEISHVTQRHLARAMEDQQRSAPLTWVGALGSILLAMASPQAGMAALT 183 SD+ Q A + + V Q + +ED+Q+S PL A SIL A + A L+ Sbjct: 8 SDDNGQAAEAVVTDDEIVLQDQQLKTIEDEQKSVPLVATLAPFSILCAEYDNETSAAFLS 67 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 6AIT-A nrPDB 776 0.0 3C37-A nrPDB 356 1e-98 Sequences not found previously or not previously below threshold: 4WB7-A nrPDB 34 0.20 2R4U-A nrPDB 33 0.26 5X3F-B nrPDB 32 0.57 3QBD-A nrPDB 32 0.68 4G12-A nrPDB 32 0.76 4JEK-A nrPDB 32 0.77 5N23-A nrPDB 32 0.80 1SIE-A nrPDB 31 1.1 5U2O-A nrPDB 31 1.2 5FZQ-A nrPDB 31 1.3 4IL3-A nrPDB 31 1.3 3QBR-A nrPDB 30 1.6 4APC-A nrPDB 30 2.3 1UGO-A nrPDB 30 2.3 4DOX-A nrPDB 30 2.4 4YFM-A nrPDB 30 3.2 5CXP-A nrPDB 29 4.0 3V9H-A nrPDB 29 6.1 1M1J-A nrPDB 29 7.4 1W3B-A nrPDB 28 8.4 CONVERGED! >6AIT-A nrPDB Length = 439 Score = 776 bits (2003), Expect = 0.0, Method: Composition-based stats. Identities = 438/438 (100%), Positives = 438/438 (100%) Query: 45 SIGQEMQMGDYYVRQLRGSAPLINDPLLTQYINSLGMRLVSHANSVKTPFHFFLINNDEI 104 SIGQEMQMGDYYVRQLRGSAPLINDPLLTQYINSLGMRLVSHANSVKTPFHFFLINNDEI Sbjct: 2 SIGQEMQMGDYYVRQLRGSAPLINDPLLTQYINSLGMRLVSHANSVKTPFHFFLINNDEI 61 Query: 105 NAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVTQRHLARAMEDQQRSAPLTWVGA 164 NAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVTQRHLARAMEDQQRSAPLTWVGA Sbjct: 62 NAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVTQRHLARAMEDQQRSAPLTWVGA 121 Query: 165 LGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRSGFDPQAMPT 224 LGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRSGFDPQAMPT Sbjct: 122 LGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRSGFDPQAMPT 181 Query: 225 FLEKLLDQARYSSRPPEILLTHPLPESRLADARNRANQMRPMVVQSSEDFYLAKARTLGM 284 FLEKLLDQARYSSRPPEILLTHPLPESRLADARNRANQMRPMVVQSSEDFYLAKARTLGM Sbjct: 182 FLEKLLDQARYSSRPPEILLTHPLPESRLADARNRANQMRPMVVQSSEDFYLAKARTLGM 241 Query: 285 YNSGRNQLTSDLLDEWAKGNVRQQRAAQYGRALQAMEANKYDEARKTLQPLLAAEPGNAW 344 YNSGRNQLTSDLLDEWAKGNVRQQRAAQYGRALQAMEANKYDEARKTLQPLLAAEPGNAW Sbjct: 242 YNSGRNQLTSDLLDEWAKGNVRQQRAAQYGRALQAMEANKYDEARKTLQPLLAAEPGNAW 301 Query: 345 YLDLATDIDLGQNKANEAINRLKNARDLRTNPVLQLNLANAYLQGGQPQEAANILNRYTF 404 YLDLATDIDLGQNKANEAINRLKNARDLRTNPVLQLNLANAYLQGGQPQEAANILNRYTF Sbjct: 302 YLDLATDIDLGQNKANEAINRLKNARDLRTNPVLQLNLANAYLQGGQPQEAANILNRYTF 361 Query: 405 NNKDDSNGWDLLAQAEAALNNRDQELAARAEGYALAGRLDQAISLLSSASSQVKLGSLQQ 464 NNKDDSNGWDLLAQAEAALNNRDQELAARAEGYALAGRLDQAISLLSSASSQVKLGSLQQ Sbjct: 362 NNKDDSNGWDLLAQAEAALNNRDQELAARAEGYALAGRLDQAISLLSSASSQVKLGSLQQ 421 Query: 465 ARYDARIDQLRQLQERFK 482 ARYDARIDQLRQLQERFK Sbjct: 422 ARYDARIDQLRQLQERFK 439 >3C37-A nrPDB Length = 253 Score = 356 bits (914), Expect = 1e-98, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 132/240 (55%), Gaps = 13/240 (5%) Query: 44 LSIGQEMQMGDYYVRQLRGSAPLINDPLLTQYINSLGMRLVSHANSVKTPFHFFLINNDE 103 +SI QE ++G+ + ++ +NDP + +Y++ +G RL+S A +V+ + F ++ +D Sbjct: 14 ISIEQEKELGNKFAVEIEKQQQPVNDPEVQRYVDKVGKRLLSGARAVEFDYVFKVVKDDS 73 Query: 104 INAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVTQRHLARAMEDQQRSAPLTWVG 163 +NAFA GG V +H+ L + +DNE++LA V+AHEI+H RH R M Q+ L Sbjct: 74 VNAFAIPGGRVYVHTGLLKAADNETELAGVLAHEINHAVARHGTRQM-TQEYGYSLVLSL 132 Query: 164 ALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRSGFDPQAMP 223 LG +P +A L G L G + GM+S++++ E +AD +G++ + ++G++P + Sbjct: 133 VLGD------NPNM-LAQLAGQLFG-KAGMMSYSREYENQADFLGVETMYKAGYNPNGLT 184 Query: 224 TFLEKL--LDQARYSSRPPEILLTHPLPESRLADARNRANQMRPMVVQSSE-DFYLAKAR 280 +F +KL +D S THPL R+ + ++ P + E +F K R Sbjct: 185 SFFQKLNAMDGGT-QSNVARFFSTHPLTSERIQRVQAEIAKLPPQRYLTDETEFKKIKGR 243 >4WB7-A nrPDB Length = 405 Score = 33.6 bits (75), Expect = 0.20, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 39/100 (39%), Gaps = 13/100 (13%) Query: 25 AFADSADTLPDMGTSAGSTLSIGQEMQMGDYYVRQLRGSAPLINDPLLTQYINSLGMRLV 84 A D + + +GT + + + + + G++Y ++ ++ + +N R++ Sbjct: 93 AHLDQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNE--KRIL 150 Query: 85 SHANSVKTPFHFFL---INNDEINAFA----FFGGNVVLH 117 +V PF L ++ N + GG + H Sbjct: 151 ---QAVNFPFLVKLEFSFKDNS-NLYMVMEYVPGGEMFSH 186 >2R4U-A nrPDB Length = 485 Score = 33.2 bits (74), Expect = 0.26, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 7/100 (7%) Query: 80 GMRLVSHANSVKTPFHFFLINNDEINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEIS 139 GM H N ++ P+ FF I+ F G L + L+ Y+D+ + ++ A EI+ Sbjct: 167 GMFYAHHMNDIQLPWSFF-----NIHGLEFNGQISFLKAGLY-YADHITAVSPTYAREIT 220 Query: 140 HVTQRHLARAMEDQQRSAPLTWVGALGSILLAMASPQAGM 179 + + QQR G L + + SP+ + Sbjct: 221 EPQFAYGMEGLL-QQRHREGRLSGVLNGVDEKIWSPETDL 259 >5X3F-B nrPDB Length = 393 Score = 32.0 bits (71), Expect = 0.57, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 5/71 (7%) Query: 28 DSADTLPDMGTSAGSTLSIGQEMQMGDYYVRQLRGSAPLINDPLLTQYINSLGMRLVSHA 87 D D + +GT + + + + + G++Y ++ ++ + +N R++ Sbjct: 84 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNE--KRIL--- 138 Query: 88 NSVKTPFHFFL 98 +V PF L Sbjct: 139 QAVNFPFLVKL 149 >3QBD-A nrPDB Length = 368 Score = 32.0 bits (71), Expect = 0.68, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 59/175 (33%), Gaps = 35/175 (20%) Query: 80 GMRLVSHANSVKTPFHFFLINNDEINAFAFFGGNVV---------LHSALFRYSDNESQL 130 GM V A + P LI D A G+V+ + + + + ES+L Sbjct: 189 GMAEVVKAGFIADPVILDLIEADPQAALD-PAGDVLPELIRRAITVKAEVVAADEKESEL 247 Query: 131 ASVM--AHEISHVTQRHLARAMEDQQRSAPLTWVGALGSILLAMASPQAGMAALTGTLAG 188 ++ H + H +R R + A ++ A +A L G L Sbjct: 248 REILNYGHTLGHAIER---RERYRWRHGAAVSVGLVFA----------AELARLAGRLDD 294 Query: 189 TRQGMISFTQQNEQEADRIGIQVLQRSGFDPQAMPTFLEKLLDQARYSSRPPEIL 243 Q++ +G+ V +DP A+P LE + + + + Sbjct: 295 ATA------QRHRTILSSLGLPV----SYDPDALPQLLEIMAGDKKTRAGVLRFV 339 >4G12-A nrPDB Length = 215 Score = 31.6 bits (70), Expect = 0.76, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 13/116 (11%) Query: 66 LINDPLLTQYINSLGMRLVSHANSVKTPFHFFLINNDEINAFAFFGGNVVLHSALFRYSD 125 + LL + + + RL++ A V T N A G + H ++ Sbjct: 67 PNKESLLVELLVGVSARLLAGARDVTT---------RSANLAAALDGLIEFH---LDFAL 114 Query: 126 NESQLASVMAHEISHVTQRHLARAMEDQQRSAPLTWVGALGSILLAMASPQAGMAA 181 E+ L + +++H+ R + QR WVG L + +A A + A Sbjct: 115 GEADLIRIQDRDLAHLPAV-AERQVRKAQRQYVEVWVGVLRELNPGLAEADARLMA 169 >4JEK-A nrPDB Length = 453 Score = 31.6 bits (70), Expect = 0.77, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 61/177 (34%), Gaps = 10/177 (5%) Query: 54 DYYVRQLRGSAPLINDPLLTQYINSLGMRLVSHANSVKTPFHFFLINNDEINAFAFFGGN 113 + +V + SA D Y+ + S A F F ++ +D A Sbjct: 171 NSHVLDWKVSATPTED---GGYVLNGTKHFCSGAKGSDLLFVFGVVQDDSPQQGAIIAAA 227 Query: 114 VVLHSALFRYSDNESQLASVMAHEISHVTQRHLARAMEDQQRSAPLTWVGALGSILLAMA 173 + A +D+ + + M S T H + D+ AP +V A I Sbjct: 228 IPTSRAGVTPNDDWAAIG--MRQTDSGSTDFHNVKVEPDEVLGAPNAFVLAF--IQSERG 283 Query: 174 SPQAGMAAL--TGTLAGTRQGMISFTQQN-EQEADRIGIQVLQRSGFDPQAMPTFLE 227 S A +A L G G + ++ +A +Q++ DP + ++ E Sbjct: 284 SLFAPIAQLIFANVYLGIAHGALDAAREYTRTQARPWTPAGIQQATEDPYTIRSYGE 340 >5N23-A nrPDB Length = 352 Score = 31.6 bits (70), Expect = 0.80, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 13/100 (13%) Query: 25 AFADSADTLPDMGTSAGSTLSIGQEMQMGDYYVRQLRGSAPLINDPLLTQYINSLGMRLV 84 A D + + +GT + + + + + G++Y ++ ++ + +N R+ Sbjct: 39 AHLDQFERIRTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNE--KRI- 95 Query: 85 SHANSVKTPFHFFL---INNDEINAFAF----FGGNVVLH 117 +V PF L ++ N + GG + H Sbjct: 96 --QQAVNFPFLVKLEFSFKDNS-NLYMVLEYAPGGEMFSH 132 >1SIE-A nrPDB Length = 383 Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%) Query: 47 GQEMQMGDYYVRQLR---GSAPLINDPLLTQYINSLGM 81 GQ M+ + V ++R G+ P+ DP +T+Y++ G Sbjct: 338 GQPMEGENTQVEEVRVYDGTEPVPGDPDMTRYVDRFGK 375 >5U2O-A nrPDB Length = 576 Score = 30.9 bits (68), Expect = 1.2, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 4/74 (5%) Query: 204 ADRIGIQVLQRSGFDPQAMPTFLEKLLDQARYSSRPPEILLTHPLPESRLADARNRANQM 263 A G + + P +P + KLLD A R L HP PE R + +N + Sbjct: 250 AQFAGAAAMGARVYAP-FLPDYARKLLDAAI---RAQRYLEQHPDPEFRYDEGQNNGSGP 305 Query: 264 RPMVVQSSEDFYLA 277 E F+ A Sbjct: 306 YEKRTDREERFWAA 319 >5FZQ-A nrPDB Length = 131 Score = 30.9 bits (68), Expect = 1.3, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 321 EANKYDEARKTLQPLLAAEPGNAWYLDLATDIDLGQNKANEAINRLKNARDLRTNPVLQL 380 + K +EA K ++ ++ +P N L ++ + KA EAI ++ A L N + L Sbjct: 17 QEGKAEEAIKYMRKAVSLDPNNIKTLSNLANLLAQEGKAEEAIKYMRKAVSLDPNNIKTL 76 Query: 381 -NLANAYLQGGQPQEAANILNR 401 NLA Q G+ +EA + + Sbjct: 77 SNLAVLLAQEGKAEEAIKYMRK 98 >4IL3-A nrPDB Length = 461 Score = 30.9 bits (68), Expect = 1.3, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 17/117 (14%) Query: 56 YVRQLRGSAPLINDPLLTQYINSLGMRLVSHANSVKTPF-HFFLINND--EINAFAFFGG 112 ++ L + D L + I SL R V P F+I+ ++ A+F G Sbjct: 216 FIMPLFNKFTPLEDGELKKSIESLADR-------VGFPLDKIFVIDGSKRSSHSNAYFTG 268 Query: 113 ------NVVLHSALFRYSDNESQLASVMAHEISHVTQRHLARAMEDQQRSAPLTWVG 163 +VL L S++ ++ +V+AHEI H + H+ + Q L + Sbjct: 269 LPFTSKRIVLFDTLVN-SNSTDEITAVLAHEIGHWQKNHIVNMVIFSQLHTFLIFSL 324 >3QBR-A nrPDB Length = 179 Score = 30.5 bits (67), Expect = 1.6, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 83 LVSHANSVKTPFHFFLINNDEINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVT 142 L++ AN T + L++N I+ G ++HS L D + + HEI V Sbjct: 29 LLASANKQDTDYLTDLLDNTNIDLTCVPNGQEIIHSLLQLVGDFNQRFSQ--THEIEPVA 86 Query: 143 QRHL 146 Q Sbjct: 87 QSLG 90 >4APC-A nrPDB Length = 350 Score = 30.1 bits (66), Expect = 2.3, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 12/110 (10%) Query: 159 LTWVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRSGFD 218 L GS + +L L DR + + GF Sbjct: 233 LVLKIISGSFPPVSLHYSYDLRSLVSQLF------------KRNPRDRPSVNSILEKGFI 280 Query: 219 PQAMPTFLEKLLDQARYSSRPPEILLTHPLPESRLADARNRANQMRPMVV 268 + + FL L + + + P+P R A +N + M + Sbjct: 281 AKRIEKFLSPQLIAEEFCLKTFSKFGSQPIPAKRPASGQNSISVMPAQKI 330 >1UGO-A nrPDB Length = 99 Score = 30.1 bits (66), Expect = 2.3, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 13/85 (15%) Query: 246 HPLPESRLADARNRANQMRPMVV----QSSEDFYLAKARTLGMYNSGRNQLTSDLLDEWA 301 HP SRL + + + P VV S + Y R L + D +D Sbjct: 14 HP-SISRLQEIQREVKAIEPQVVGFSGLSDDKNYKRLERIL-----TKQLFEIDSVDTEG 67 Query: 302 KGNVRQQR---AAQYGRALQAMEAN 323 KG+++Q R A + R L+ +E N Sbjct: 68 KGDIQQARKRAAQETERLLKELEQN 92 >4DOX-A nrPDB Length = 226 Score = 30.1 bits (66), Expect = 2.4, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 8/96 (8%) Query: 175 PQAGMAALTGTLAGTRQGMISFTQQNEQ-----EADRIGIQVLQRSGFDPQAMPTFLEKL 229 P+ +A L + + + F + D++ + SG+ P A + Sbjct: 85 PEISLAQLASIVKASGTSLRKFCRYFAPIIWNLRTDKMAPANWEASGYKPSAKFAAFD-F 143 Query: 230 LDQARYSS--RPPEILLTHPLPESRLADARNRANQM 263 D + +PP L P E R+A+A N+ + Sbjct: 144 FDGVENPAAMQPPSGLTRSPTQEERIANATNKQVHL 179 >4YFM-A nrPDB Length = 275 Score = 29.7 bits (65), Expect = 3.2, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 378 LQLNLANAYLQGGQPQEAANILNRYTFNNKDDSNGWDLLAQAEAALNNRDQEL-AARAEG 436 +QLN+ + L PQ+ L R + DS G DLL DQ + AA G Sbjct: 154 VQLNIPDGDLDTSTPQQLVANLRRLVLDEGLDSRGRDLLTDWLKRNTTGDQSIRAAVPAG 213 Query: 437 YALAGR 442 + +A + Sbjct: 214 WTVADK 219 >5CXP-A nrPDB Length = 390 Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 4/53 (7%) Query: 31 DTLPDMGTSAGSTLSIGQEMQMGDYYVRQLRGSAPLINDPLLTQYINSLGMRL 83 D L G S ST+ I +G S P +NDP QY++ +G L Sbjct: 160 DFLKQYGASLSSTIKIIMPESLGFNPAM----SDPTLNDPTTAQYVSIIGGHL 208 >3V9H-A nrPDB Length = 566 Score = 28.5 bits (62), Expect = 6.1, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 26/131 (19%) Query: 11 ATLIAAMTIGQ---VAPAFADSADTLPDMGTSAGSTLSIGQEMQMGDYYVRQLRGSAPLI 67 A ++A +GQ V A D+A L D + Y +L G P+ Sbjct: 144 AEILAKTMVGQGKTVIQAEIDAAAELIDF-------------FRFNAKYAVELEGQQPIS 190 Query: 68 NDPLLTQYINSLGMRLVSHANSVKTPFHFFLINNDEINAFAFFGGNVVLHSALFRYSDNE 127 P NS R + + +PF+F I + A A G V L++ SD Sbjct: 191 VPPS----TNSTVYRGLEGFVAAISPFNFTAIGGNLAGAPALMGNVV-----LWKPSDT- 240 Query: 128 SQLASVMAHEI 138 + LAS + I Sbjct: 241 AMLASYAVYRI 251 >1M1J-A nrPDB Length = 491 Score = 28.5 bits (62), Expect = 7.4, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 8/93 (8%) Query: 195 SFTQQNEQEADRIGIQVLQRS-------GFDPQAMPTFLEKLLDQARYSSRPPEILLTHP 247 S + + + D+ G +Q+ P T L L + S PE P Sbjct: 165 SCARSFDYQVDKEGYDNIQKHLTQASSIDMHPDFQTTTLSTLKMRPLKDSNVPEHFKLKP 224 Query: 248 LPESRLADARNRANQMRPMVVQSSEDFYLAKAR 280 PE + A N QM+ +V++ E ++A+AR Sbjct: 225 SPEMQAMSAFNNIKQMQ-VVLERPETDHVAEAR 256 >1W3B-A nrPDB Length = 388 Score = 28.2 bits (61), Expect = 8.4, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 5/83 (6%) Query: 316 ALQAMEANKYDEARKTLQPLLAAEPGNAWYLDLATDIDLGQNKANEAINRLKNARDLRTN 375 A + +A ++ A + L EP N L L + I + + + + A ++ N Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA--IKQN 63 Query: 376 PVLQ---LNLANAYLQGGQPQEA 395 P+L NL N Y + GQ QEA Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEA 86 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.312 0.129 0.344 Lambda K H 0.267 0.0397 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,114,852 Number of Sequences: 36641 Number of extensions: 660153 Number of successful extensions: 2026 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 32 Number of HSP's that attempted gapping in prelim test: 2008 Number of HSP's gapped (non-prelim): 45 length of query: 487 length of database: 10,336,785 effective HSP length: 101 effective length of query: 386 effective length of database: 6,636,044 effective search space: 2561512984 effective search space used: 2561512984 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 61 (28.2 bits)