BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P63228 (191 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 3L1U-A nrPDB 401 e-112 3L8F-A nrPDB 392 e-110 2O2X-A nrPDB 97 4e-21 4PNH-A nrPDB 95 2e-20 3L8H-A nrPDB 92 1e-19 2FPR-A nrPDB 81 3e-16 3ZVN-A nrPDB 33 0.088 2GV1-A nrPDB 32 0.18 4U00-A nrPDB 32 0.21 2HDO-A nrPDB 32 0.22 2GFH-A nrPDB 31 0.41 5YQS-A nrPDB 30 0.45 6D0P-A nrPDB 30 0.49 4J6E-A nrPDB 29 1.5 2HSZ-A nrPDB 28 1.6 3BF1-A nrPDB 28 1.7 2RGL-A nrPDB 28 1.7 3FJG-A nrPDB 28 2.4 2P27-A nrPDB 28 2.7 5TF0-A nrPDB 28 3.2 4MJ2-A nrPDB 27 4.1 4BX2-A nrPDB 27 4.8 5D98-A nrPDB 27 4.9 1OG6-A nrPDB 27 5.0 3L8A-A nrPDB 27 5.7 2F57-A nrPDB 27 6.9 5LTM-B nrPDB 27 7.2 1WR8-A nrPDB 26 8.3 3NUH-A nrPDB 26 8.5 4BKM-A nrPDB 26 9.2 >3L1U-A nrPDB Length = 211 Score = 401 bits (1030), Expect = e-112, Method: Compositional matrix adjust. Identities = 191/191 (100%), Positives = 191/191 (100%) Query: 1 MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIAR 60 MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIAR Sbjct: 21 MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIAR 80 Query: 61 GKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSA 120 GKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSA Sbjct: 81 GKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSA 140 Query: 121 RDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLP 180 RDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLP Sbjct: 141 RDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLP 200 Query: 181 QAIKKQQKPAQ 191 QAIKKQQKPAQ Sbjct: 201 QAIKKQQKPAQ 211 >3L8F-A nrPDB Length = 187 Score = 392 bits (1007), Expect = e-110, Method: Compositional matrix adjust. Identities = 187/187 (100%), Positives = 187/187 (100%) Query: 1 MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIAR 60 MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIAR Sbjct: 1 MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIAR 60 Query: 61 GKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSA 120 GKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSA Sbjct: 61 GKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSA 120 Query: 121 RDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLP 180 RDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLP Sbjct: 121 RDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLP 180 Query: 181 QAIKKQQ 187 QAIKKQQ Sbjct: 181 QAIKKQQ 187 >2O2X-A nrPDB Length = 218 Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 59/151 (39%), Positives = 80/151 (52%) Query: 5 VPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFT 64 +PA+FLDRDGTINVD Y + ++ A+ + G +VVVTNQSGIARG F Sbjct: 31 LPALFLDRDGTINVDTDYPSDPAEIVLRPQMLPAIATANRAGIPVVVVTNQSGIARGYFG 90 Query: 65 EAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYL 124 + F + + L + V +D + C +H G RKP+PGML+ A L Sbjct: 91 WSAFAAVNGRVLELLREEGVFVDMVLACAYHEAGVGPLAIPDHPMRKPNPGMLVEAGKRL 150 Query: 125 HIDMAASYMVGDKLEDMQAAVAANVGTKVLV 155 +D+ S +VGDKL DMQA A + LV Sbjct: 151 ALDLQRSLIVGDKLADMQAGKRAGLAQGWLV 181 >4PNH-A nrPDB Length = 199 Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 58/153 (37%), Positives = 78/153 (50%), Gaps = 9/153 (5%) Query: 8 IFLDRDGTINVDH-GYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEA 66 + LDRDG INVD +V D + + G ++A+ L G+ +VV TNQSGI RG F A Sbjct: 22 VVLDRDGVINVDSDAFVKSPDEWVALPGSLEAIARLNHAGYRVVVATNQSGIGRGLFDMA 81 Query: 67 QFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYLHI 126 + M + A +D +++CPH CDCRKP PGM+ + I Sbjct: 82 TLNAMHLKMHRAAAAVGGRIDAVFFCPHTADDH-------CDCRKPMPGMMKLIAERFEI 134 Query: 127 DMAASYMVGDKLEDMQAAVAANVGTKVLVRTGK 159 D A + +VGD L D+QA A LV TGK Sbjct: 135 DPADTPVVGDSLRDLQAGAALGFRPH-LVLTGK 166 >3L8H-A nrPDB Length = 179 Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 77/163 (47%), Gaps = 17/163 (10%) Query: 8 IFLDRDGTINVDH-GYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEA 66 I LDRDG +N D +V D + + G + A+ L + + +V+ TNQSG+ARG F A Sbjct: 4 IILDRDGVVNQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVLATNQSGLARGLFDTA 63 Query: 67 QFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYLHI 126 + + M +LA +D I+ CPH P C CRKP PGM + Sbjct: 64 TLNAIHDKMHRALAQMGGVVDAIFMCPHGPDDG-------CACRKPLPGMYRDIARRYDV 116 Query: 127 DMAASYMVGDKLEDMQAAVAANV---------GTKVLVRTGKP 160 D+A VGD L D+QAA A G K L + G P Sbjct: 117 DLAGVPAVGDSLRDLQAAAQAGCAPWLVQTGNGRKTLAQGGLP 159 >2FPR-A nrPDB Length = 176 Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 12/150 (8%) Query: 8 IFLDRDGTINVDHGYVHEIDNFE---FIDGVIDAMRELKKMGFALVVVTNQSGIARGKFT 64 +F+DRDGT+ + ++D F+ F GVI + +L+K G+ LV++TNQ G+ F Sbjct: 17 LFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFP 76 Query: 65 EAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYL 124 +A F+ M + V D + CPH P CDCRKP ++ Sbjct: 77 QADFDGPHNLMMQIFTSQGVQFDEVLICPHLPADE-------CDCRKPKVKLVERYLAEQ 129 Query: 125 HIDMAASYMVGDKLEDMQAAVAANVGTKVL 154 +D A SY++GD+ D+Q +A N+G L Sbjct: 130 AMDRANSYVIGDRATDIQ--LAENMGINGL 157 >3ZVN-A nrPDB Length = 416 Score = 32.7 bits (73), Expect = 0.088, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 20/35 (57%) Query: 39 MRELKKMGFALVVVTNQSGIARGKFTEAQFETLTE 73 ++EL G+ LV+ TNQ GI RGK F+ E Sbjct: 96 LQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVE 130 >2GV1-A nrPDB Length = 92 Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust. Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 65 EAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFR 104 E Q E L +W+ S R ++ + PHHP G + +FR Sbjct: 52 EGQVEKLMQWLK-SGGPRSARVERVLSEPHHPSGELTDFR 90 >4U00-A nrPDB Length = 244 Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust. Identities = 14/31 (45%), Positives = 21/31 (67%) Query: 30 EFIDGVIDAMRELKKMGFALVVVTNQSGIAR 60 E + V+D MR+L + G +VVVT++ G AR Sbjct: 172 EMVGEVLDVMRDLAQGGMTMVVVTHEMGFAR 202 >2HDO-A nrPDB Length = 209 Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 24/40 (60%) Query: 110 RKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANV 149 RKP P LL+A + +++ + +GD + D Q A AANV Sbjct: 137 RKPDPLPLLTALEKVNVAPQNALFIGDSVSDEQTAQAANV 176 >2GFH-A nrPDB Length = 260 Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust. Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 111 KPHPGMLLSARDYLHIDMAASYMVGDKLE-DMQAAVAANVGTKVLVRTGKPITPEAENAA 169 KP P + D L + MVGD LE D+Q + A + V + + + Sbjct: 176 KPAPSIFYHCCDLLGVQPGDCVMVGDTLETDIQGGLNAGLKATVWINKSGRVPLTSSPMP 235 Query: 170 DWVLNSLADLPQAIK 184 ++++S+ +LP ++ Sbjct: 236 HYMVSSVLELPALLQ 250 >5YQS-A nrPDB Length = 765 Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 118 LSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLA 177 L+A H+D+ + +VG + ++A + V T V++ +GKPIT W+ N+ A Sbjct: 496 LNATTGEHVDVNSLSLVGAQAPLIKAIIDTGVPTVVVLSSGKPIT------EPWLSNNTA 549 Query: 178 DLPQ 181 L Q Sbjct: 550 ALVQ 553 >6D0P-A nrPDB Length = 293 Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 27/46 (58%) Query: 139 EDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLPQAIK 184 E ++ ++ A TK LV TG+P+ E +V+N+ A++ +AI Sbjct: 234 EGVEFSLNAEEDTKFLVLTGQPLNEPIEGYGPFVMNTKAEIMEAIN 279 >4J6E-A nrPDB Length = 283 Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust. Identities = 13/41 (31%), Positives = 24/41 (58%) Query: 148 NVGTKVLVRTGKPITPEAENAADWVLNSLADLPQAIKKQQK 188 ++G +V G + EA+ D +L +ADLP+AI+ + + Sbjct: 169 DIGQGAVVCEGLVLAVEAQEGTDAMLRRVADLPEAIRGRAE 209 >2HSZ-A nrPDB Length = 243 Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/69 (26%), Positives = 26/69 (37%) Query: 111 KPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAAD 170 KPHP + VGD D+ AA +A L P A++ D Sbjct: 170 KPHPAPFYYLCGKFGLYPKQILFVGDSQNDIFAAHSAGCAVVGLTYGYNYNIPIAQSKPD 229 Query: 171 WVLNSLADL 179 W+ + AD+ Sbjct: 230 WIFDDFADI 238 >3BF1-A nrPDB Length = 249 Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Query: 37 DAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWM 75 DAMRE+K +G A VV T + I R F++ F W+ Sbjct: 52 DAMREIKGIGVASVVPTQNTVIER--FSQKYFHISPIWV 88 >2RGL-A nrPDB Length = 481 Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 5/60 (8%) Query: 116 MLLSARDYLHID-MAASYMVGDKL-EDMQAAVAANVG-TKVLVRTGKPITPEAENAADWV 172 ++ + DY+ I+ ASYM G +L + + +A+ T V + GKPI P+A ++W+ Sbjct: 307 LVKGSADYIGINQYTASYMKGQQLMQQTPTSYSADWQVTYVFAKNGKPIGPQAN--SNWL 364 >3FJG-A nrPDB Length = 251 Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust. Identities = 12/36 (33%), Positives = 19/36 (52%) Query: 49 LVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDV 84 +V SG AR F + Q + W+DWS ++ D+ Sbjct: 164 IVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDI 199 >2P27-A nrPDB Length = 306 Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust. Identities = 15/36 (41%), Positives = 18/36 (50%) Query: 104 RQVCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLE 139 RQ KP P M + ID A + MVGD+LE Sbjct: 208 RQALVVGKPSPYMFECITENFSIDPARTLMVGDRLE 243 >5TF0-A nrPDB Length = 751 Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust. Identities = 13/33 (39%), Positives = 20/33 (60%) Query: 119 SARDYLHIDMAASYMVGDKLEDMQAAVAANVGT 151 + RDY +DM+ + M + + QAAV A VG+ Sbjct: 201 AGRDYNTVDMSRNRMFNEYMYPYQAAVDAGVGS 233 >4MJ2-A nrPDB Length = 653 Score = 27.3 bits (59), Expect = 4.1, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 10/59 (16%) Query: 28 NFEFIDGVIDAMRELKKM-GFALVVVTNQSGIARGKFTEAQ-FETLTEWMDW--SLADR 82 NF +DG +D +RE + + GF L+ G A G FT+ + + + EW D SLA R Sbjct: 110 NFTHLDGYLDLLRENQLLPGFELM------GSASGHFTDFEDKQQVFEWKDLVSSLARR 162 >4BX2-A nrPDB Length = 293 Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 18/36 (50%) Query: 104 RQVCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLE 139 RQ KP P M + +D A + MVGD+LE Sbjct: 203 RQALVVGKPSPYMFQCITEDFSVDPARTLMVGDRLE 238 >5D98-A nrPDB Length = 709 Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust. Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Query: 23 VHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWM--DWSLA 80 ++E D+ EF+ G+ A +++ ++ V+T + G+ + + + + W +W A Sbjct: 331 INENDHSEFLGGIGRASKKIPEISLTQDVITTE-GLKQSENKLPEPRSFPRWFNAEWMWA 389 Query: 81 DRDVDLDG 88 +D DL G Sbjct: 390 IKDSDLTG 397 >1OG6-A nrPDB Length = 298 Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust. Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 8/93 (8%) Query: 14 GTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTE 73 T ++D +H D D V DA + L + G G++ FT AQF L Sbjct: 118 ATDHLDLLLIHRPDPLMDADEVADAFKHLHQSG-----KVRHFGVS--NFTPAQFALLQS 170 Query: 74 WMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQV 106 + ++LA V++ ++ P G++++ +Q+ Sbjct: 171 RLPFTLATNQVEISPVHQ-PLLLDGTLDQLQQL 202 >3L8A-A nrPDB Length = 421 Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 34/137 (24%) Query: 19 DHGYVHEIDNFEFIDGVID----AMRELKKMGFALVV-------------------VTNQ 55 +H Y ++ FIDGV+ A++ + G A+++ V N Sbjct: 112 EHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIRLNDHRLVENS 171 Query: 56 SGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSV---EEFRQVCDCRKP 112 I G+F E FE L + + D +V + + PH+P G V ++ ++ + K Sbjct: 172 LQIINGRF-EIDFEQLEK----DIIDNNVKI-YLLCSPHNPGGRVWDNDDLIKIAELCKK 225 Query: 113 HPGMLLSARDYLHIDMA 129 H +L+S D +H D+A Sbjct: 226 HGVILVS--DEIHQDLA 240 >2F57-A nrPDB Length = 317 Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust. Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 3/21 (14%) Query: 121 RDYLH---IDMAASYMVGDKL 138 RDY H +DM +SY+VGD+L Sbjct: 97 RDYHHDNVVDMYSSYLVGDEL 117 >5LTM-B nrPDB Length = 539 Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Query: 97 QGSVEEFRQVCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLE 139 G+ + F KPHPG L +A + + +A S +V D+L+ Sbjct: 234 NGTNQSFHPFIHNSKPHPGQLWAADQMISL-LANSQLVRDELD 275 >1WR8-A nrPDB Length = 231 Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust. Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 8/52 (15%) Query: 5 VPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQS 56 + AI +D DGTI + +HE ++A+R + +G +++VT + Sbjct: 3 IKAISIDIDGTITYPNRMIHE--------KALEAIRRAESLGIPIMLVTGNT 46 >3NUH-A nrPDB Length = 525 Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 7/67 (10%) Query: 26 IDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLA---DR 82 +DN++ + + D M ++V SGIA G T LTE ++ LA D Sbjct: 146 VDNYDGTEKIPDVM----PTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 201 Query: 83 DVDLDGI 89 D+ ++G+ Sbjct: 202 DISIEGL 208 >4BKM-A nrPDB Length = 309 Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust. Identities = 12/29 (41%), Positives = 16/29 (55%) Query: 111 KPHPGMLLSARDYLHIDMAASYMVGDKLE 139 KP P M + +D A + MVGD+LE Sbjct: 226 KPSPYMFQCITEDFSVDPARTLMVGDRLE 254 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 3L1U-A nrPDB 315 7e-87 3L8F-A nrPDB 305 1e-83 2O2X-A nrPDB 212 9e-56 4PNH-A nrPDB 203 3e-53 3L8H-A nrPDB 196 5e-51 2FPR-A nrPDB 186 7e-48 Sequences not found previously or not previously below threshold: 3ZVN-A nrPDB 50 7e-07 2HSZ-A nrPDB 47 4e-06 2P27-A nrPDB 41 3e-04 1PW5-A nrPDB 40 8e-04 4BKM-A nrPDB 39 9e-04 4BX2-A nrPDB 39 0.001 2HDO-A nrPDB 37 0.004 2GFH-A nrPDB 35 0.021 2YY6-A nrPDB 34 0.033 5GVX-A nrPDB 34 0.033 2HI0-A nrPDB 34 0.039 1TE2-A nrPDB 32 0.12 4J6E-A nrPDB 32 0.12 4KNV-A nrPDB 32 0.13 2C4N-A nrPDB 32 0.13 2IQC-A nrPDB 32 0.14 3PDW-A nrPDB 32 0.15 4I9G-A nrPDB 31 0.30 4RN3-A nrPDB 31 0.33 3NAS-A nrPDB 31 0.33 5JLR-A nrPDB 31 0.39 5YQS-A nrPDB 29 1.2 3N28-A nrPDB 29 1.2 5USW-A nrPDB 29 1.3 4QDF-A nrPDB 29 1.6 2I34-A nrPDB 28 2.0 6D0P-A nrPDB 28 2.7 1AK1-A nrPDB 28 2.8 3HLT-A nrPDB 27 3.7 2C8J-A nrPDB 27 4.2 5LY7-A nrPDB 27 4.5 >3L1U-A nrPDB Length = 211 Score = 315 bits (807), Expect = 7e-87, Method: Composition-based stats. Identities = 191/191 (100%), Positives = 191/191 (100%) Query: 1 MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIAR 60 MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIAR Sbjct: 21 MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIAR 80 Query: 61 GKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSA 120 GKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSA Sbjct: 81 GKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSA 140 Query: 121 RDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLP 180 RDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLP Sbjct: 141 RDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLP 200 Query: 181 QAIKKQQKPAQ 191 QAIKKQQKPAQ Sbjct: 201 QAIKKQQKPAQ 211 >3L8F-A nrPDB Length = 187 Score = 305 bits (780), Expect = 1e-83, Method: Composition-based stats. Identities = 187/187 (100%), Positives = 187/187 (100%) Query: 1 MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIAR 60 MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIAR Sbjct: 1 MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIAR 60 Query: 61 GKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSA 120 GKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSA Sbjct: 61 GKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSA 120 Query: 121 RDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLP 180 RDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLP Sbjct: 121 RDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLP 180 Query: 181 QAIKKQQ 187 QAIKKQQ Sbjct: 181 QAIKKQQ 187 >2O2X-A nrPDB Length = 218 Score = 212 bits (539), Expect = 9e-56, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 82/159 (51%) Query: 5 VPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFT 64 +PA+FLDRDGTINVD Y + ++ A+ + G +VVVTNQSGIARG F Sbjct: 31 LPALFLDRDGTINVDTDYPSDPAEIVLRPQMLPAIATANRAGIPVVVVTNQSGIARGYFG 90 Query: 65 EAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYL 124 + F + + L + V +D + C +H G RKP+PGML+ A L Sbjct: 91 WSAFAAVNGRVLELLREEGVFVDMVLACAYHEAGVGPLAIPDHPMRKPNPGMLVEAGKRL 150 Query: 125 HIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITP 163 +D+ S +VGDKL DMQA A + LV + P Sbjct: 151 ALDLQRSLIVGDKLADMQAGKRAGLAQGWLVDGEAAVQP 189 >4PNH-A nrPDB Length = 199 Score = 203 bits (517), Expect = 3e-53, Method: Composition-based stats. Identities = 58/153 (37%), Positives = 78/153 (50%), Gaps = 9/153 (5%) Query: 8 IFLDRDGTINVDHG-YVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEA 66 + LDRDG INVD +V D + + G ++A+ L G+ +VV TNQSGI RG F A Sbjct: 22 VVLDRDGVINVDSDAFVKSPDEWVALPGSLEAIARLNHAGYRVVVATNQSGIGRGLFDMA 81 Query: 67 QFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYLHI 126 + M + A +D +++CPH CDCRKP PGM+ + I Sbjct: 82 TLNAMHLKMHRAAAAVGGRIDAVFFCPHTADDH-------CDCRKPMPGMMKLIAERFEI 134 Query: 127 DMAASYMVGDKLEDMQAAVAANVGTKVLVRTGK 159 D A + +VGD L D+QA A LV TGK Sbjct: 135 DPADTPVVGDSLRDLQAGAALGFRPH-LVLTGK 166 >3L8H-A nrPDB Length = 179 Score = 196 bits (498), Expect = 5e-51, Method: Composition-based stats. Identities = 56/152 (36%), Positives = 76/152 (50%), Gaps = 9/152 (5%) Query: 8 IFLDRDGTINVDHG-YVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEA 66 I LDRDG +N D +V D + + G + A+ L + + +V+ TNQSG+ARG F A Sbjct: 4 IILDRDGVVNQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVLATNQSGLARGLFDTA 63 Query: 67 QFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYLHI 126 + + M +LA +D I+ CPH P C CRKP PGM + Sbjct: 64 TLNAIHDKMHRALAQMGGVVDAIFMCPHGPDDG-------CACRKPLPGMYRDIARRYDV 116 Query: 127 DMAASYMVGDKLEDMQAAVAANVGTKVLVRTG 158 D+A VGD L D+QAA A LV+TG Sbjct: 117 DLAGVPAVGDSLRDLQAAAQAGCAP-WLVQTG 147 >2FPR-A nrPDB Length = 176 Score = 186 bits (471), Expect = 7e-48, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 12/150 (8%) Query: 8 IFLDRDGTINVDHGYVHEIDNFE---FIDGVIDAMRELKKMGFALVVVTNQSGIARGKFT 64 +F+DRDGT+ + ++D F+ F GVI + +L+K G+ LV++TNQ G+ F Sbjct: 17 LFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFP 76 Query: 65 EAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYL 124 +A F+ M + V D + CPH P CDCRKP ++ Sbjct: 77 QADFDGPHNLMMQIFTSQGVQFDEVLICPHLPADE-------CDCRKPKVKLVERYLAEQ 129 Query: 125 HIDMAASYMVGDKLEDMQAAVAANVGTKVL 154 +D A SY++GD+ D+Q +A N+G L Sbjct: 130 AMDRANSYVIGDRATDIQ--LAENMGINGL 157 >3ZVN-A nrPDB Length = 416 Score = 49.8 bits (117), Expect = 7e-07, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 50/148 (33%), Gaps = 28/148 (18%) Query: 13 DGTINVDHG---YVHEIDNF-EFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQF 68 DGT+ + ++ + ++EL G+ LV+ TNQ GI RGK F Sbjct: 66 DGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVF 125 Query: 69 ETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGML----LSARDYL 124 + ++ L V + H RKP GM A + + Sbjct: 126 KG---KVEAVLEKLGVPF-QVLVATHAGLN-----------RKPVSGMWDHLQEQANEGI 170 Query: 125 HIDMAASYMVGDKLEDMQAAVAANVGTK 152 I + S VGD A AN Sbjct: 171 PISVEDSVFVGDA-----AGRLANWAPG 193 >2HSZ-A nrPDB Length = 243 Score = 47.1 bits (110), Expect = 4e-06, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 49/147 (33%), Gaps = 25/147 (17%) Query: 33 DGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYC 92 V + + LK G+ L VVTN+ T+ + L +D ++ Sbjct: 117 PNVKETLEALKAQGYILAVVTNK---------------PTKHVQPILTAFG--IDHLF-- 157 Query: 93 PHHPQGSVEEFRQVCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTK 152 S Q KPHP + VGD D+ AA +A Sbjct: 158 ------SEMLGGQSLPEIKPHPAPFYYLCGKFGLYPKQILFVGDSQNDIFAAHSAGCAVV 211 Query: 153 VLVRTGKPITPEAENAADWVLNSLADL 179 L P A++ DW+ + AD+ Sbjct: 212 GLTYGYNYNIPIAQSKPDWIFDDFADI 238 >2P27-A nrPDB Length = 306 Score = 40.9 bits (94), Expect = 3e-04, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 11/86 (12%) Query: 111 KPHPGMLLSARDYLHIDMAASYMVGDKLE-DMQAAVAANVGTKVLVRTGKPITPEAEN-- 167 KP P M + ID A + MVGD+LE D+ + T VL TG EA+ Sbjct: 215 KPSPYMFECITENFSIDPARTLMVGDRLETDILFGHRCGM-TTVLTLTGVSRLEEAQAYL 273 Query: 168 -------AADWVLNSLADLPQAIKKQ 186 + + S+ADL + ++ + Sbjct: 274 AAGQHDLVPHYYVESIADLTEGLEDE 299 >1PW5-A nrPDB Length = 253 Score = 39.7 bits (91), Expect = 8e-04, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 7/73 (9%) Query: 111 KPHPGMLLSARDYLHIDMAASYMVGDKL-EDMQAAVAANVGTKVLVRTGKPITPE----A 165 KP+P ++ + + MVGD+L D++ A + +LV TG+ TPE A Sbjct: 183 KPNPLVVDVISEKFGVPKERMAMVGDRLYTDVKLGKNAGI-VSILVLTGE-TTPEDLERA 240 Query: 166 ENAADWVLNSLAD 178 E D+V +L + Sbjct: 241 ETKPDFVFKNLGE 253 Score = 33.2 bits (74), Expect = 0.066, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 23/109 (21%) Query: 1 MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIAR 60 M + LD DGT +D + G ++ + LK+ V TN S + Sbjct: 1 MLDKIELFILDMDGTFYLDDS---------LLPGSLEFLETLKEKNKRFVFFTNNSSLGA 51 Query: 61 GKFTEAQFETLTEWMDWSLADRDVDL--DGIYYCPHHPQGSVEEFRQVC 107 + L + VD+ D + + + C Sbjct: 52 QDY------------VRKLRNMGVDVPDDAVVTSGEITAEHMLKRFGRC 88 >4BKM-A nrPDB Length = 309 Score = 39.4 bits (90), Expect = 9e-04, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 11/84 (13%) Query: 111 KPHPGMLLSARDYLHIDMAASYMVGDKLE-DMQAAVAANVGTKVLVRTGKPITPEAEN-- 167 KP P M + +D A + MVGD+LE D+ + T VL TG EA+ Sbjct: 226 KPSPYMFQCITEDFSVDPARTLMVGDRLETDILFGHRCGM-TTVLTLTGVSSLEEAQAYL 284 Query: 168 -------AADWVLNSLADLPQAIK 184 + + S+ADL + ++ Sbjct: 285 TAGQRDLVPHYYVESIADLMEGLE 308 >4BX2-A nrPDB Length = 293 Score = 39.4 bits (90), Expect = 0.001, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 11/84 (13%) Query: 111 KPHPGMLLSARDYLHIDMAASYMVGDKLE-DMQAAVAANVGTKVLVRTGKPITPEAEN-- 167 KP P M + +D A + MVGD+LE D+ + T VL TG EA+ Sbjct: 210 KPSPYMFQCITEDFSVDPARTLMVGDRLETDILFGHRCGM-TTVLTLTGVSSLEEAQAYL 268 Query: 168 -------AADWVLNSLADLPQAIK 184 + + S+ADL + ++ Sbjct: 269 TAGQRDLVPHYYVESIADLMEGLE 292 >2HDO-A nrPDB Length = 209 Score = 37.4 bits (85), Expect = 0.004, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 27/55 (49%) Query: 106 VCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKP 160 RKP P LL+A + +++ + +GD + D Q A AANV + V P Sbjct: 133 DTPKRKPDPLPLLTALEKVNVAPQNALFIGDSVSDEQTAQAANVDFGLAVWGMDP 187 >2GFH-A nrPDB Length = 260 Score = 35.1 bits (79), Expect = 0.021, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 5/77 (6%) Query: 111 KPHPGMLLSARDYLHIDMAASYMVGDKLE-DMQAAVAANV-GTKVLVRTGK-PITPEAEN 167 KP P + D L + MVGD LE D+Q + A + T + ++G+ P+T + Sbjct: 176 KPAPSIFYHCCDLLGVQPGDCVMVGDTLETDIQGGLNAGLKATVWINKSGRVPLT--SSP 233 Query: 168 AADWVLNSLADLPQAIK 184 ++++S+ +LP ++ Sbjct: 234 MPHYMVSSVLELPALLQ 250 >2YY6-A nrPDB Length = 213 Score = 34.3 bits (77), Expect = 0.033, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 28/117 (23%) Query: 32 IDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYY 91 I ++A LK GF L VV+N+ E L++ + L + D I Sbjct: 86 IPYTLEA---LKSKGFKLAVVSNK------------LEELSKKILDIL-NLSGYFDLIV- 128 Query: 92 CPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAAN 148 + F + +KP P +L + L + + +VGD D++A A Sbjct: 129 -------GGDTFGE----KKPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAG 174 >5GVX-A nrPDB Length = 430 Score = 34.3 bits (77), Expect = 0.033, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 33/180 (18%) Query: 6 PAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKK-------MGFALVVVTNQSGI 58 PA+F D DGT+ V + D G ++A+++L G L VT + G+ Sbjct: 181 PAVFFDFDGTL---SDIVEDPDAAWLAPGALEALQKLAARCPIAVLSGRDLADVTQRVGL 237 Query: 59 ------ARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKP 112 F + D + A P Q + E +Q+ P Sbjct: 238 PGIWYAGSHGFELTAPDGTHHQNDAAAAAI----------PVLKQAAAELRQQL----GP 283 Query: 113 HPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVL-VRTGKPITPEAENAADW 171 PG+++ + + D++ + AAV L V TG+ + E DW Sbjct: 284 FPGVVVEH-KRFGVAVHYRNAARDRVGKVAAAVRTAEQRHALRVTTGREVI-ELRPDVDW 341 >2HI0-A nrPDB Length = 240 Score = 34.0 bits (76), Expect = 0.039, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 26/151 (17%) Query: 33 DGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYC 92 G++D M+ L++ G L VV+N+ E + ++ D Sbjct: 113 PGILDLMKNLRQKGVKLAVVSNKPN-----------EAVQVLVEELFP---GSFDFAL-- 156 Query: 93 PHHPQGSVEEFRQVCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTK 152 G R RKP P M L + +GD D+Q A + + Sbjct: 157 -----GEKSGIR-----RKPAPDMTSECVKVLGVPRDKCVYIGDSEIDIQTARNSEMDEI 206 Query: 153 VLVRTGKPITPEAENAADWVLNSLADLPQAI 183 + + + ++ A ++++ L +AI Sbjct: 207 AVNWGFRSVPFLQKHGATVIVDTAEKLEEAI 237 >1TE2-A nrPDB Length = 226 Score = 32.4 bits (72), Expect = 0.12, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Query: 108 DCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAEN 167 KPHP + L L +D + D + M A+ AA + + V+ PEA+N Sbjct: 147 PYSKPHPQVYLDCAAKLGVDPLTCVALEDSVNGMIASKAARMRSIVVP------APEAQN 200 Query: 168 AADWVL 173 +VL Sbjct: 201 DPRFVL 206 >4J6E-A nrPDB Length = 283 Score = 32.4 bits (72), Expect = 0.12, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 18/116 (15%) Query: 69 ETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYLHIDM 128 + L + +++G H G + R P P + +D+ Sbjct: 108 DALLRRVLDEFEKEGFEIEG----AHEVMGEMTLPRGRLGKVSPAPEHMADIDK--ALDV 161 Query: 129 AASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLPQAIK 184 A +G ++G +V G + EA+ D +L +ADLP+AI+ Sbjct: 162 ARE--IG----------RLDIGQGAVVCEGLVLAVEAQEGTDAMLRRVADLPEAIR 205 >4KNV-A nrPDB Length = 241 Score = 32.4 bits (72), Expect = 0.13, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Query: 111 KPHPGMLLSARDYLHIDMAASYMVGDKLE-DMQAAVAANVGTKVLVRTGKPITPEAENAA 169 KP P + + L + MVGD LE D+Q + A + V + + ++ Sbjct: 159 KPAPSIFYYCCNLLGVQPGDCVMVGDTLETDIQGGLNAGLKATVWINKNGIVPLKSSPVP 218 Query: 170 DWVLNSLADLPQAIK 184 ++++S+ +LP ++ Sbjct: 219 HYMVSSVLELPALLQ 233 >2C4N-A nrPDB Length = 250 Score = 32.4 bits (72), Expect = 0.13, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 5/73 (6%) Query: 111 KPHPGMLLSARDYLHIDMAASYMVGDKLE-DMQAAVAANVGTKVLVRTGKPITPEAENA- 168 KP P ++ +A + + + +VGD L D+ A A + T +LV +G + ++ Sbjct: 176 KPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLET-ILVLSGVSSLDDIDSMP 234 Query: 169 --ADWVLNSLADL 179 W+ S+A++ Sbjct: 235 FRPSWIYPSVAEI 247 >2IQC-A nrPDB Length = 210 Score = 32.0 bits (71), Expect = 0.14, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 4/74 (5%) Query: 69 ETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKP-HPGMLLSARDYLHID 127 E + W L + +V +C P G + P + G+L LH D Sbjct: 85 EGSQVLVHWLLGNSEVF---AAFCRALPAGLLTLVTSRHPALSPVYLGLLTDWGQRLHYD 141 Query: 128 MAASYMVGDKLEDM 141 + VG + +D+ Sbjct: 142 LQKGIWVGTESQDV 155 >3PDW-A nrPDB Length = 266 Score = 32.0 bits (71), Expect = 0.15, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Query: 111 KPHPGMLLSARDYLHIDMAASYMVGDK-LEDMQAAVAANVGTKVLVRTG 158 KP ++ A L D++ + MVGD D+ A + A + T +LV TG Sbjct: 183 KPESIIMEQAMRVLGTDVSETLMVGDNYATDIMAGINAGMDT-LLVHTG 230 >4I9G-A nrPDB Length = 361 Score = 31.3 bits (69), Expect = 0.30, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%) Query: 111 KPHPGMLLSARDYLHIDMAASYMVGDKL-EDMQAAVAANVGTKVLVRTG 158 KP P ++ A D A+ +VGD+L D++ A AA + ++V TG Sbjct: 194 KPAPALMTEAVARG--DFRAALVVGDRLDTDIEGANAAGL-PSLMVLTG 239 >4RN3-A nrPDB Length = 213 Score = 30.9 bits (68), Expect = 0.33, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 19/39 (48%) Query: 111 KPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANV 149 KPHP LL ++ I + VGD D +A AA V Sbjct: 149 KPHPEPLLKVLEHFGIGPREALFVGDSEVDRLSAEAAGV 187 >3NAS-A nrPDB Length = 233 Score = 30.9 bits (68), Expect = 0.33, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 6/69 (8%) Query: 111 KPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAAD 170 KP P + L+A L + A + D + A +A + + + G+P+ AD Sbjct: 146 KPDPDIFLTAAAMLDVSPADCAAIEDAEAGISAIKSAGMFAVGVGQ-GQPML-----GAD 199 Query: 171 WVLNSLADL 179 V+ +DL Sbjct: 200 LVVRQTSDL 208 >5JLR-A nrPDB Length = 396 Score = 30.9 bits (68), Expect = 0.39, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 110 RKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAA 169 R L + MA + VGD D+ AA +G + KP E +A+ Sbjct: 313 RAGKATALREFAQRAGVPMAQTVAVGDGANDIDMLAAAGLG---IAFNAKPALREVADAS 369 >5YQS-A nrPDB Length = 765 Score = 29.0 bits (63), Expect = 1.2, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 9/130 (6%) Query: 52 VTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRK 111 VT GI +A WS D+ + + V D ++ Sbjct: 433 VTPLDGIKAAVGDKATINYAQGCERWS-NDQSGFAEAVEAAKKSDVAVVVVGTWSRDQKE 491 Query: 112 PHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADW 171 G+ + + H+D+ + +VG + ++A + V T V++ +GKPIT W Sbjct: 492 LWAGLNATTGE--HVDVNSLSLVGAQAPLIKAIIDTGVPTVVVLSSGKPITEP------W 543 Query: 172 VLNSLADLPQ 181 + N+ A L Q Sbjct: 544 LSNNTAALVQ 553 >3N28-A nrPDB Length = 335 Score = 29.0 bits (63), Expect = 1.2, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 17/35 (48%) Query: 116 MLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVG 150 +LL+ +++ + VGD D+ AA +G Sbjct: 249 ILLTLAQQYDVEIHNTVAVGDGANDLVMMAAAGLG 283 >5USW-A nrPDB Length = 281 Score = 29.0 bits (63), Expect = 1.3, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 5/84 (5%) Query: 7 AIFLDRD---GTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKF 63 ++ LDR G +NV + F +D + ++ K G + + + +S R Sbjct: 12 SLLLDRSHVMGILNVTPDSFSDGGQFTHLDAALKQAEKMVKAGVSFIDIGGES--TRPGA 69 Query: 64 TEAQFETLTEWMDWSLADRDVDLD 87 E + + + + D Sbjct: 70 PEVSLQEELDRVLPIIEAIHQRFD 93 >4QDF-A nrPDB Length = 390 Score = 28.6 bits (62), Expect = 1.6, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 1/88 (1%) Query: 49 LVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVD-LDGIYYCPHHPQGSVEEFRQVC 107 ++ TN +EA + + +DW +D + ++ I H+P + E Q Sbjct: 220 VISGTNYDDPNAELRSEATYFGPSYMIDWLESDANGQTIETILINCHYPVSNNEFVLQYG 279 Query: 108 DCRKPHPGMLLSARDYLHIDMAASYMVG 135 K PG+ + A +G Sbjct: 280 AIVKKLPGVSDEIAAGMAEQFAEGVQLG 307 >2I34-A nrPDB Length = 258 Score = 28.2 bits (61), Expect = 2.0, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 17/67 (25%) Query: 6 PAIFLDRDGTINVDHG-----------YVHEIDNFE------FIDGVIDAMRELKKMGFA 48 PAI LD D T+ + Y ++ D++ + G ID ++ + G Sbjct: 60 PAIVLDLDETVLDNSPHQAMSVKTGKGYPYKWDDWINKAEAEALPGSIDFLKYTESKGVD 119 Query: 49 LVVVTNQ 55 + ++N+ Sbjct: 120 IYYISNR 126 >6D0P-A nrPDB Length = 293 Score = 27.8 bits (60), Expect = 2.7, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 21/33 (63%) Query: 151 TKVLVRTGKPITPEAENAADWVLNSLADLPQAI 183 TK LV TG+P+ E +V+N+ A++ +AI Sbjct: 246 TKFLVLTGQPLNEPIEGYGPFVMNTKAEIMEAI 278 >1AK1-A nrPDB Length = 310 Score = 27.8 bits (60), Expect = 2.8, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 15/42 (35%) Query: 84 VDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYLH 125 L Y P+ + + + RKP P ML +D Sbjct: 7 GLLVMAYGTPYKEEDIERYYTHIRRGRKPEPEMLQDLKDRYE 48 >3HLT-A nrPDB Length = 266 Score = 27.4 bits (59), Expect = 3.7, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 18/49 (36%) Query: 111 KPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGK 159 KP L A + + M+GD D +LV+TGK Sbjct: 179 KPEKTFFLEALRGTGCEPEEAVMIGDDCRDDVGGAQDVGMLGILVKTGK 227 >2C8J-A nrPDB Length = 311 Score = 27.4 bits (59), Expect = 4.2, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 14/41 (34%) Query: 84 VDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYL 124 L Y P+ + + + RKP P ML + Sbjct: 6 GLLVMAYGTPYKEEDIERYYTHIRRGRKPSPEMLEDLTERY 46 >5LY7-A nrPDB Length = 352 Score = 27.0 bits (58), Expect = 4.5, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 16/28 (57%) Query: 125 HIDMAASYMVGDKLEDMQAAVAANVGTK 152 + MA +++VGD ++AA+AA Sbjct: 265 DLSMAGAHVVGDAASRIEAALAAGCDMG 292 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.310 0.127 0.344 Lambda K H 0.267 0.0391 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,069,643 Number of Sequences: 36641 Number of extensions: 242956 Number of successful extensions: 840 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 33 Number of HSP's that attempted gapping in prelim test: 773 Number of HSP's gapped (non-prelim): 85 length of query: 191 length of database: 10,336,785 effective HSP length: 92 effective length of query: 99 effective length of database: 6,965,813 effective search space: 689615487 effective search space used: 689615487 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 56 (26.2 bits)