BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P63172
         (113 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

5JPW-A nrPDB                                                          236   2e-63
5WI4-A nrPDB                                                          228   6e-61
3FM7-A nrPDB                                                          169   2e-43
1XDX-A nrPDB                                                          155   3e-39
5U2G-A nrPDB                                                           32   0.080
3TW5-A nrPDB                                                           27   1.7  
3A9Z-A nrPDB                                                           27   1.8  
5OHS-A nrPDB                                                           27   2.6  
1RQX-A nrPDB                                                           26   4.8  
2CHR-A nrPDB                                                           25   5.0  
5KXJ-A nrPDB                                                           25   5.4  
3JRU-B nrPDB                                                           25   7.1  
6MRT-A nrPDB                                                           25   7.2  
1KNR-A nrPDB                                                           25   7.6  
4Z9M-A nrPDB                                                           25   8.7  

>5JPW-A nrPDB
          Length = 143

 Score =  236 bits (602), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP 60
           MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP
Sbjct: 3   MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP 62

Query: 61  FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI 113
           FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI
Sbjct: 63  FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI 115


>5WI4-A nrPDB
          Length = 145

 Score =  228 bits (580), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 106/113 (93%), Positives = 112/113 (99%)

Query: 1   MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP 60
           MED+QA+EETAFVVDEVS+IVKEAIESAIGGNAYQHSKVNQWTTNV+EQTLSQLTKLG+P
Sbjct: 3   MEDFQASEETAFVVDEVSSIVKEAIESAIGGNAYQHSKVNQWTTNVLEQTLSQLTKLGRP 62

Query: 61  FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI 113
           FKYIVTCVIMQKNGAGLH+ASSCFWDSSTDGSCTVRWENKTMYCIVS FGLSI
Sbjct: 63  FKYIVTCVIMQKNGAGLHSASSCFWDSSTDGSCTVRWENKTMYCIVSTFGLSI 115


>3FM7-A nrPDB
          Length = 111

 Score =  169 bits (429), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 79/113 (69%), Positives = 94/113 (83%), Gaps = 2/113 (1%)

Query: 1   MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP 60
           M+D  + EE+ F+VD+VS  +KEAIE+ IGGNAYQH KVN WT  VVE  L+ LTK  KP
Sbjct: 1   MDD--SREESQFIVDDVSKTIKEAIETTIGGNAYQHDKVNNWTGQVVENCLTVLTKEQKP 58

Query: 61  FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI 113
           +KYIVT +IMQKNGAGLHTASSC+W++ TDGSCTVRWENKTMYCIVS FGL++
Sbjct: 59  YKYIVTAMIMQKNGAGLHTASSCYWNNDTDGSCTVRWENKTMYCIVSVFGLAV 111


>1XDX-A nrPDB
          Length = 114

 Score =  155 bits (392), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 68/108 (62%), Positives = 89/108 (82%)

Query: 6   AAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKPFKYIV 65
           A EE AFV D+VSNI+KE+I++ +    Y  +KV+QWT++ +E  + +LT L KPFKY+V
Sbjct: 7   AVEEAAFVADDVSNIIKESIDAVLQNQQYSEAKVSQWTSSCLEHCIKRLTALNKPFKYVV 66

Query: 66  TCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI 113
           TC+IMQKNGAGLHTA+SC+WDS+TDGS TVRWENK+MYCI + FGL+I
Sbjct: 67  TCIIMQKNGAGLHTAASCWWDSTTDGSRTVRWENKSMYCICTVFGLAI 114


>5U2G-A nrPDB
          Length = 838

 Score = 31.6 bits (70), Expect = 0.080,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 5/40 (12%)

Query: 24  AIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKPFKY 63
           AIE+ +GG +Y+ SK N+ T     Q+L Q+    KPF Y
Sbjct: 399 AIEAVVGGFSYEQSKFNRAT-----QSLVQVGSSIKPFIY 433


>3TW5-A nrPDB
          Length = 367

 Score = 27.3 bits (59), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 34  YQHSKVNQWTTNVVEQTLSQLTKLGKPFKYIVTCVIMQKNGAGLHTA-SSCFWDSS---- 88
           YQ S   QW+              GK  K  +  V  +KNG    +    C  D      
Sbjct: 45  YQDSINVQWSQGQPSAAEKYAKAFGKDVKTFMDAV-SKKNGIDSQSGRKKCSSDDDCSTL 103

Query: 89  TDGS-CTVRWENKTMYCIVSAFGLS 112
           TDGS C++R    + YCI + FG+S
Sbjct: 104 TDGSSCSIRTGKTSGYCIPTWFGIS 128


>3A9Z-A nrPDB
          Length = 432

 Score = 26.9 bits (58), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 3   DYQAAEETAFVVDEVSNIVKEAIESAIG--GNAYQHSKVNQWTTNVVEQTLSQLTKLGKP 60
           DY A   T  +  EV   V EA++ A G   ++Y   +  +   N    +L+++   GKP
Sbjct: 23  DYNA---TTPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIG-GKP 78

Query: 61  FKYIVTCVIMQKNGAGLHTASSCFWDSST 89
              I T    + N   +H+   CF +  T
Sbjct: 79  QDIIFTSGGTESNNLVIHSTVRCFHEQQT 107


>5OHS-A nrPDB
          Length = 672

 Score = 26.6 bits (57), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 15  DEVSNIVKEAIESAIGGNAYQHSKVNQWTT 44
           D +  ++  A+ S + GNAY HS +  +T+
Sbjct: 464 DGLVTVICGALSSGLMGNAYHHSDIGGYTS 493


>1RQX-A nrPDB
          Length = 338

 Score = 25.8 bits (55), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 9/65 (13%)

Query: 22  KEAIES--AIGGNAY-------QHSKVNQWTTNVVEQTLSQLTKLGKPFKYIVTCVIMQK 72
           ++A+ES  A GG  Y        H           E+  +Q  +LG  F Y+V C +   
Sbjct: 142 EDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGS 201

Query: 73  NGAGL 77
             AG+
Sbjct: 202 TQAGM 206


>2CHR-A nrPDB
          Length = 370

 Score = 25.4 bits (54), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 23  EAIESAIGGNAYQHSKVNQ-WTTNVVEQTLSQLTKLG 58
           EA+ +++G  AY    VNQ W   V    + +L  LG
Sbjct: 179 EALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALG 215


>5KXJ-A nrPDB
          Length = 557

 Score = 25.4 bits (54), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 25  IESAIGGNAYQHSKVNQWTTNV-VEQTLSQLTKLGKPFKYIVTCVIMQKNGAGLH 78
           +E A+        +++++  N  V   L +L  L +  + IV C +M+K   GLH
Sbjct: 460 LERALRRITMLQQEIDEYYANFRVSNNLLELRNLVQVAELIVRCAMMRKESRGLH 514


>3JRU-B nrPDB
          Length = 490

 Score = 25.0 bits (53), Expect = 7.1,   Method: Composition-based stats.
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 20  IVKEAIESAIGGNAYQHSKV 39
           +V  A+E+AI GNAY+ S V
Sbjct: 310 VVVPAVENAIDGNAYRPSDV 329


>6MRT-A nrPDB
          Length = 324

 Score = 25.0 bits (53), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 1  MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQ---WTTNVVEQTLSQLTKL 57
          +++  A   T  V D+   +VK AIE+A G     +  ++Q   W T   ++T+ +L++ 
Sbjct: 14 LDEVDAGSMTEIVADKTVEVVKNAIETADGALDLYNKYLDQVIPWQT--FDETIKELSRF 71

Query: 58 GKPF 61
           + +
Sbjct: 72 KQEY 75


>1KNR-A nrPDB
          Length = 540

 Score = 25.0 bits (53), Expect = 7.6,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 47  VEQTLSQLTKLGKPFKYIVTCVIMQKNGAGLH 78
           V   L +L  L +  + IV C +M+K   GLH
Sbjct: 483 VSNNLLELRNLVQVAELIVRCAMMRKESRGLH 514


>4Z9M-A nrPDB
          Length = 392

 Score = 24.6 bits (52), Expect = 8.7,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 16  EVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKPFKYIVTCVIMQKN 73
           EV N+   A+E   G  A ++ K+++ T    ++ +       KP   ++TC  M ++
Sbjct: 163 EVENVAITALEGLKGDLAGRYYKLSEMTEQDQQRLIDDHFLFDKPVSPLLTCAGMARD 220


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

5JPW-A nrPDB                                                          204   5e-54
5WI4-A nrPDB                                                          198   4e-52
3FM7-A nrPDB                                                          181   5e-47
1XDX-A nrPDB                                                          179   2e-46

Sequences not found previously or not previously below threshold:

3TW5-A nrPDB                                                           29   0.35 
5U2G-A nrPDB                                                           29   0.44 
6MRT-A nrPDB                                                           27   2.0  
5ZRV-A nrPDB                                                           26   3.1  
6N8J-m nrPDB                                                           26   3.7  
5OHS-A nrPDB                                                           25   7.4  
3EBY-A nrPDB                                                           25   9.8  


CONVERGED!
>5JPW-A nrPDB
          Length = 143

 Score =  204 bits (520), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP 60
           MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP
Sbjct: 3   MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP 62

Query: 61  FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI 113
           FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI
Sbjct: 63  FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI 115


>5WI4-A nrPDB
          Length = 145

 Score =  198 bits (504), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 106/113 (93%), Positives = 112/113 (99%)

Query: 1   MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP 60
           MED+QA+EETAFVVDEVS+IVKEAIESAIGGNAYQHSKVNQWTTNV+EQTLSQLTKLG+P
Sbjct: 3   MEDFQASEETAFVVDEVSSIVKEAIESAIGGNAYQHSKVNQWTTNVLEQTLSQLTKLGRP 62

Query: 61  FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI 113
           FKYIVTCVIMQKNGAGLH+ASSCFWDSSTDGSCTVRWENKTMYCIVS FGLSI
Sbjct: 63  FKYIVTCVIMQKNGAGLHSASSCFWDSSTDGSCTVRWENKTMYCIVSTFGLSI 115


>3FM7-A nrPDB
          Length = 111

 Score =  181 bits (460), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 79/113 (69%), Positives = 94/113 (83%), Gaps = 2/113 (1%)

Query: 1   MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP 60
           M+D  + EE+ F+VD+VS  +KEAIE+ IGGNAYQH KVN WT  VVE  L+ LTK  KP
Sbjct: 1   MDD--SREESQFIVDDVSKTIKEAIETTIGGNAYQHDKVNNWTGQVVENCLTVLTKEQKP 58

Query: 61  FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI 113
           +KYIVT +IMQKNGAGLHTASSC+W++ TDGSCTVRWENKTMYCIVS FGL++
Sbjct: 59  YKYIVTAMIMQKNGAGLHTASSCYWNNDTDGSCTVRWENKTMYCIVSVFGLAV 111


>1XDX-A nrPDB
          Length = 114

 Score =  179 bits (454), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 68/108 (62%), Positives = 89/108 (82%)

Query: 6   AAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKPFKYIV 65
           A EE AFV D+VSNI+KE+I++ +    Y  +KV+QWT++ +E  + +LT L KPFKY+V
Sbjct: 7   AVEEAAFVADDVSNIIKESIDAVLQNQQYSEAKVSQWTSSCLEHCIKRLTALNKPFKYVV 66

Query: 66  TCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI 113
           TC+IMQKNGAGLHTA+SC+WDS+TDGS TVRWENK+MYCI + FGL+I
Sbjct: 67  TCIIMQKNGAGLHTAASCWWDSTTDGSRTVRWENKSMYCICTVFGLAI 114


>3TW5-A nrPDB
          Length = 367

 Score = 29.3 bits (64), Expect = 0.35,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 34  YQHSKVNQWTTNVVEQTLSQLTKLGKPFKYIVTCVIMQKNGAGLHTA-SSCFWDSS---- 88
           YQ S   QW+              GK  K  +  V  +KNG    +    C  D      
Sbjct: 45  YQDSINVQWSQGQPSAAEKYAKAFGKDVKTFMDAV-SKKNGIDSQSGRKKCSSDDDCSTL 103

Query: 89  TDGS-CTVRWENKTMYCIVSAFGLS 112
           TDGS C++R    + YCI + FG+S
Sbjct: 104 TDGSSCSIRTGKTSGYCIPTWFGIS 128


>5U2G-A nrPDB
          Length = 838

 Score = 29.3 bits (64), Expect = 0.44,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 5/40 (12%)

Query: 24  AIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKPFKY 63
           AIE+ +GG +Y+ SK N+ T     Q+L Q+    KPF Y
Sbjct: 399 AIEAVVGGFSYEQSKFNRAT-----QSLVQVGSSIKPFIY 433


>6MRT-A nrPDB
          Length = 324

 Score = 27.0 bits (58), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 1  MEDYQAAEETAFVVDEVSNIVKEAIESAIGG----NAYQHSKVNQWTTNVVEQTLSQLTK 56
          +++  A   T  V D+   +VK AIE+A G     N Y   +V  W     ++T+ +L++
Sbjct: 14 LDEVDAGSMTEIVADKTVEVVKNAIETADGALDLYNKYL-DQVIPW--QTFDETIKELSR 70

Query: 57 LGKPFKYIVTCVI 69
            + +    + ++
Sbjct: 71 FKQEYSQAASVLV 83


>5ZRV-A nrPDB
          Length = 763

 Score = 26.2 bits (56), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 26/64 (40%)

Query: 32  NAYQHSKVNQWTTNVVEQTLSQLTKLGKPFKYIVTCVIMQKNGAGLHTASSCFWDSSTDG 91
           N     K  Q  T + ++    + KL K  K IV  +     G GL  A SC +  +T  
Sbjct: 105 NMLAACKTLQEVTQLSQEAQRIVEKLEKSTKPIVAAINGSCLGGGLEVAISCQYRIATKD 164

Query: 92  SCTV 95
             TV
Sbjct: 165 RKTV 168


>6N8J-m nrPDB
          Length = 486

 Score = 26.2 bits (56), Expect = 3.7,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 22  KEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQ 53
           K+ +++ +G    Q  K N WT+   E   S+
Sbjct: 174 KQVLDATLGLMGNQEDKENGWTSAAKEAIFSK 205


>5OHS-A nrPDB
          Length = 672

 Score = 25.0 bits (53), Expect = 7.4,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 15  DEVSNIVKEAIESAIGGNAYQHSKVNQWTT 44
           D +  ++  A+ S + GNAY HS +  +T+
Sbjct: 464 DGLVTVICGALSSGLMGNAYHHSDIGGYTS 493


>3EBY-A nrPDB
          Length = 163

 Score = 24.7 bits (52), Expect = 9.8,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 13 VVDEVSNIVKEAIE--SAIGGNAYQHSKVNQWTTNVVEQTLSQLTK 56
          V  EV+ + + AI+  +A  G      ++ QW T  V+  L Q+  
Sbjct: 4  VAAEVAQVAQSAIDDFNAAYGLCLDDDRLEQWPTLFVDDCLYQVIA 49


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.316    0.132    0.408 

Lambda     K      H
   0.267   0.0405    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,380,817
Number of Sequences: 36641
Number of extensions: 146720
Number of successful extensions: 407
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 37
length of query: 113
length of database: 10,336,785
effective HSP length: 79
effective length of query: 34
effective length of database: 7,442,146
effective search space: 253032964
effective search space used: 253032964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.7 bits)