BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P63045 (116 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 2KOG-A nrPDB 237 8e-64 1SFC-A nrPDB 197 9e-52 6MDM-J nrPDB 184 9e-48 3IPD-A nrPDB 178 4e-46 5CCI-A nrPDB 126 2e-30 1L4A-A nrPDB 122 3e-29 2NPS-A nrPDB 65 7e-12 4WY4-A nrPDB 57 2e-09 3B5N-A nrPDB 52 8e-08 4B93-A nrPDB 46 5e-06 1GL2-A nrPDB 42 9e-05 5Y6P-a8 nrPDB 33 0.031 2NUP-C nrPDB 32 0.058 2DQ3-A nrPDB 31 0.11 3KYQ-A nrPDB 31 0.14 5KR6-A nrPDB 27 1.5 5WDH-A nrPDB 26 3.1 4AKV-A nrPDB 26 3.4 1MPX-A nrPDB 26 3.8 5KR3-A nrPDB 26 4.7 5KHA-A nrPDB 25 6.0 5N9J-E nrPDB 25 6.2 4WFO-A nrPDB 25 10.0 >2KOG-A nrPDB Length = 119 Score = 237 bits (605), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 116/116 (100%), Positives = 116/116 (100%) Query: 1 MSATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL 60 MSATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL Sbjct: 4 MSATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL 63 Query: 61 SELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST 116 SELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST Sbjct: 64 SELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST 119 >1SFC-A nrPDB Length = 96 Score = 197 bits (501), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 96/96 (100%), Positives = 96/96 (100%) Query: 1 MSATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL 60 MSATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL Sbjct: 1 MSATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL 60 Query: 61 SELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM 96 SELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM Sbjct: 61 SELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM 96 >6MDM-J nrPDB Length = 117 Score = 184 bits (466), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 89/89 (100%), Positives = 89/89 (100%) Query: 1 MSATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL 60 MSATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL Sbjct: 29 MSATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL 88 Query: 61 SELDDRADALQAGASQFETSAAKLKRKYW 89 SELDDRADALQAGASQFETSAAKLKRKYW Sbjct: 89 SELDDRADALQAGASQFETSAAKLKRKYW 117 >3IPD-A nrPDB Length = 91 Score = 178 bits (452), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 87/87 (100%), Positives = 87/87 (100%) Query: 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 89 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW Sbjct: 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 64 Query: 90 WKNLKMMIILGVICAIILIIIIVYFST 116 WKNLKMMIILGVICAIILIIIIVYFST Sbjct: 65 WKNLKMMIILGVICAIILIIIIVYFST 91 >5CCI-A nrPDB Length = 63 Score = 126 bits (316), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 62/62 (100%), Positives = 62/62 (100%) Query: 28 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 87 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK Sbjct: 2 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 61 Query: 88 YW 89 YW Sbjct: 62 YW 63 >1L4A-A nrPDB Length = 80 Score = 122 bits (307), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 58/67 (86%), Positives = 63/67 (94%) Query: 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 88 ++RLQQTQAQV+EVVDIMRVNVDKVLERD K+SELDDRADALQAGASQFE SA KLKRK+ Sbjct: 14 SKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKF 73 Query: 89 WWKNLKM 95 WWKN KM Sbjct: 74 WWKNCKM 80 >2NPS-A nrPDB Length = 74 Score = 65.1 bits (157), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 47/67 (70%) Query: 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 88 N +++ Q QVDEV+D+M+ N+ KV+ER ++L EL D++++L A+ F + +L+R+ Sbjct: 7 NDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQM 66 Query: 89 WWKNLKM 95 WW+ K+ Sbjct: 67 WWRGCKI 73 >4WY4-A nrPDB Length = 64 Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 44/63 (69%) Query: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 90 R++ Q++V+ V +IM NV+++L R + L L ++ + L+A + F+T++ K+ RK+WW Sbjct: 2 RVRNLQSEVEGVKNIMTQNVERILARGENLEHLRNKTEDLEATSEHFKTTSQKVARKFWW 61 Query: 91 KNL 93 KN+ Sbjct: 62 KNV 64 >3B5N-A nrPDB Length = 61 Score = 51.6 bits (122), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 39/59 (66%) Query: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 89 R + QA++D+ V IMR N++KV ER ++L+ ++D+AD L A F+ A ++++ W Sbjct: 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61 >4B93-A nrPDB Length = 189 Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 5/95 (5%) Query: 5 AATVPPAAPAGEGGP--PAPPPNLTSNRRLQ---QTQAQVDEVVDIMRVNVDKVLERDQK 59 A T P A E A + + N+ L +TQAQVDE+ IM N+D V +R ++ Sbjct: 95 AQTALPYAMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGER 154 Query: 60 LSELDDRADALQAGASQFETSAAKLKRKYWWKNLK 94 L L D+ + L + F+T++ L R KN+K Sbjct: 155 LELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIK 189 >1GL2-A nrPDB Length = 65 Score = 41.6 bits (96), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 38/58 (65%) Query: 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 86 N R++ Q++V+ V +IM NV+++L R + L L ++ + L+A + F+T++ K+ R Sbjct: 8 NDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65 >5Y6P-a8 nrPDB Length = 514 Score = 33.1 bits (74), Expect = 0.031, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 39/84 (46%) Query: 1 MSATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL 60 M++ AA VPPAA G PA P R+ + A ++ + + V + L+ +L Sbjct: 234 MTSLAANVPPAAYRVVDGLPAIPNAEHPTRKFELPNASLERFRNEVEVAKARELQLRVEL 293 Query: 61 SELDDRADALQAGASQFETSAAKL 84 E + D ++G + F AA + Sbjct: 294 KEAYAKRDEYRSGFAGFRAMAADM 317 >2NUP-C nrPDB Length = 196 Score = 32.0 bits (71), Expect = 0.058, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 34/63 (53%) Query: 28 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 87 + R L ++ +V IM N+++VL+R + LS LD +A+ L + + ++ A L + Sbjct: 132 ARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMR 191 Query: 88 YWW 90 + Sbjct: 192 STY 194 >2DQ3-A nrPDB Length = 425 Score = 31.2 bits (69), Expect = 0.11, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 24/38 (63%) Query: 50 VDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 87 VDKVLE D++ E+ R +AL++ ++ KLKR+ Sbjct: 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKRE 66 >3KYQ-A nrPDB Length = 199 Score = 30.8 bits (68), Expect = 0.14, Method: Compositional matrix adjust. Identities = 15/52 (28%), Positives = 30/52 (57%) Query: 32 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAK 83 + + QA++DE I+ ++ +LER +KL +L +++ L + F +A K Sbjct: 140 MSKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARK 191 >5KR6-A nrPDB Length = 479 Score = 27.3 bits (59), Expect = 1.5, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 8/45 (17%) Query: 11 AAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLE 55 A P G+ APP L T+A+VDE+VDI + VD V + Sbjct: 440 AMPHGDILGFAPP--------LVITRAEVDEIVDIAKQAVDAVAD 476 >5WDH-A nrPDB Length = 376 Score = 26.2 bits (56), Expect = 3.1, Method: Composition-based stats. Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%) Query: 7 TVPPAA---PAGEGGPPAPPPNLTSNR 30 T PP P+G GGP PP L+ +R Sbjct: 39 TPPPGLLLFPSGPGGPSDPPTRLSLSR 65 >4AKV-A nrPDB Length = 386 Score = 26.2 bits (56), Expect = 3.4, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 7/65 (10%) Query: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGAS-------QFETSAAK 83 ++ + +A+ DE+V + ++ Q L +++DR D +A + Q T A++ Sbjct: 154 KMGKRRAEKDEMVGASFLLTFQIPTEHQDLQDVEDRVDTFKAFSKKMDDSVLQLSTVASE 213 Query: 84 LKRKY 88 L RK+ Sbjct: 214 LVRKH 218 >1MPX-A nrPDB Length = 615 Score = 26.2 bits (56), Expect = 3.8, Method: Compositional matrix adjust. Identities = 12/30 (40%), Positives = 18/30 (60%) Query: 64 DDRADALQAGASQFETSAAKLKRKYWWKNL 93 DD ++ LQAG++ AA L++ WW L Sbjct: 220 DDYSNFLQAGSAGDFAKAAGLEQLPWWHKL 249 >5KR3-A nrPDB Length = 479 Score = 25.8 bits (55), Expect = 4.7, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 8/45 (17%) Query: 11 AAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLE 55 A P G+ APP L T+A+VDE+V I + VD+V + Sbjct: 440 AMPHGDILGFAPP--------LVTTRAEVDEIVGIAKQAVDEVAD 476 >5KHA-A nrPDB Length = 549 Score = 25.4 bits (54), Expect = 6.0, Method: Compositional matrix adjust. Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 2/25 (8%) Query: 24 PNLTSNRRLQQTQAQVDEVVDIMRV 48 PNL N+R+Q+ AQ+ EV DI+ V Sbjct: 67 PNL--NKRMQKAFAQLSEVKDIVMV 89 >5N9J-E nrPDB Length = 376 Score = 25.4 bits (54), Expect = 6.2, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 24/41 (58%) Query: 47 RVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 87 R N++KV+ +K ++ +D A+ LQ + S AKL +K Sbjct: 25 RENIEKVISNMEKEAKHEDDANTLQPKTEEEIESLAKLFKK 65 >4WFO-A nrPDB Length = 858 Score = 24.6 bits (52), Expect = 10.0, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 16/32 (50%) Query: 78 ETSAAKLKRKYWWKNLKMMIILGVICAIILII 109 E LK K WW L+ + L +C II+ I Sbjct: 673 EKGHGDLKDKPWWPKLQTLEDLVEVCLIIIWI 704 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 2KOG-A nrPDB 190 1e-49 1SFC-A nrPDB 149 2e-37 6MDM-J nrPDB 145 3e-36 3IPD-A nrPDB 140 1e-34 4B93-A nrPDB 123 2e-29 2NPS-A nrPDB 102 4e-23 1L4A-A nrPDB 100 2e-22 4WY4-A nrPDB 98 8e-22 5CCI-A nrPDB 91 1e-19 1GL2-A nrPDB 86 5e-18 3B5N-A nrPDB 83 3e-17 Sequences not found previously or not previously below threshold: 3ZYM-A nrPDB 51 1e-07 3KYQ-A nrPDB 49 6e-07 2NUP-C nrPDB 44 1e-05 5X5L-A nrPDB 32 0.089 4M35-A nrPDB 30 0.26 3VLI-A nrPDB 29 0.39 4L5I-A nrPDB 29 0.47 3HXX-A nrPDB 28 1.1 4NUY-A nrPDB 27 1.5 3PQV-A nrPDB 27 1.6 5YZ0-C nrPDB 27 1.6 4F0L-A nrPDB 27 1.7 2E87-A nrPDB 27 1.8 6HIV-Cd nrPDB 27 2.6 2DQ3-A nrPDB 27 2.8 1F2H-A nrPDB 26 3.5 4P1T-A nrPDB 26 3.8 3CPZ-A nrPDB 26 3.8 5KR3-A nrPDB 26 4.2 1YF2-A nrPDB 26 4.3 4H9D-A nrPDB 25 5.3 5KQW-A nrPDB 25 5.7 4CJ6-A nrPDB 25 5.9 2VG4-A nrPDB 25 5.9 5KR6-A nrPDB 25 6.0 4OR2-A nrPDB 25 7.6 >2KOG-A nrPDB Length = 119 Score = 190 bits (482), Expect = 1e-49, Method: Composition-based stats. Identities = 116/116 (100%), Positives = 116/116 (100%) Query: 1 MSATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL 60 MSATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL Sbjct: 4 MSATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL 63 Query: 61 SELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST 116 SELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST Sbjct: 64 SELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST 119 >1SFC-A nrPDB Length = 96 Score = 149 bits (377), Expect = 2e-37, Method: Composition-based stats. Identities = 96/96 (100%), Positives = 96/96 (100%) Query: 1 MSATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL 60 MSATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL Sbjct: 1 MSATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL 60 Query: 61 SELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM 96 SELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM Sbjct: 61 SELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM 96 >6MDM-J nrPDB Length = 117 Score = 145 bits (367), Expect = 3e-36, Method: Composition-based stats. Identities = 89/89 (100%), Positives = 89/89 (100%) Query: 1 MSATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL 60 MSATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL Sbjct: 29 MSATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL 88 Query: 61 SELDDRADALQAGASQFETSAAKLKRKYW 89 SELDDRADALQAGASQFETSAAKLKRKYW Sbjct: 89 SELDDRADALQAGASQFETSAAKLKRKYW 117 >3IPD-A nrPDB Length = 91 Score = 140 bits (353), Expect = 1e-34, Method: Composition-based stats. Identities = 87/90 (96%), Positives = 88/90 (97%) Query: 27 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 86 + RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR Sbjct: 2 SHMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 61 Query: 87 KYWWKNLKMMIILGVICAIILIIIIVYFST 116 KYWWKNLKMMIILGVICAIILIIIIVYFST Sbjct: 62 KYWWKNLKMMIILGVICAIILIIIIVYFST 91 >4B93-A nrPDB Length = 189 Score = 123 bits (308), Expect = 2e-29, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 5/95 (5%) Query: 5 AATVPPAAPAGEGGP--PAPPPNLTSNRRLQ---QTQAQVDEVVDIMRVNVDKVLERDQK 59 A T P A E A + + N+ L +TQAQVDE+ IM N+D V +R ++ Sbjct: 95 AQTALPYAMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGER 154 Query: 60 LSELDDRADALQAGASQFETSAAKLKRKYWWKNLK 94 L L D+ + L + F+T++ L R KN+K Sbjct: 155 LELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIK 189 >2NPS-A nrPDB Length = 74 Score = 102 bits (253), Expect = 4e-23, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 47/67 (70%) Query: 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 88 N +++ Q QVDEV+D+M+ N+ KV+ER ++L EL D++++L A+ F + +L+R+ Sbjct: 7 NDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQM 66 Query: 89 WWKNLKM 95 WW+ K+ Sbjct: 67 WWRGCKI 73 >1L4A-A nrPDB Length = 80 Score = 100 bits (248), Expect = 2e-22, Method: Composition-based stats. Identities = 58/67 (86%), Positives = 63/67 (94%) Query: 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 88 ++RLQQTQAQV+EVVDIMRVNVDKVLERD K+SELDDRADALQAGASQFE SA KLKRK+ Sbjct: 14 SKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKF 73 Query: 89 WWKNLKM 95 WWKN KM Sbjct: 74 WWKNCKM 80 >4WY4-A nrPDB Length = 64 Score = 98.2 bits (243), Expect = 8e-22, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 44/64 (68%) Query: 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 89 R++ Q++V+ V +IM NV+++L R + L L ++ + L+A + F+T++ K+ RK+W Sbjct: 1 DRVRNLQSEVEGVKNIMTQNVERILARGENLEHLRNKTEDLEATSEHFKTTSQKVARKFW 60 Query: 90 WKNL 93 WKN+ Sbjct: 61 WKNV 64 >5CCI-A nrPDB Length = 63 Score = 90.5 bits (223), Expect = 1e-19, Method: Composition-based stats. Identities = 62/62 (100%), Positives = 62/62 (100%) Query: 28 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 87 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK Sbjct: 2 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 61 Query: 88 YW 89 YW Sbjct: 62 YW 63 >1GL2-A nrPDB Length = 65 Score = 85.5 bits (210), Expect = 5e-18, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 38/58 (65%) Query: 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 86 N R++ Q++V+ V +IM NV+++L R + L L ++ + L+A + F+T++ K+ R Sbjct: 8 NDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65 >3B5N-A nrPDB Length = 61 Score = 82.8 bits (203), Expect = 3e-17, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 39/59 (66%) Query: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 89 R + QA++D+ V IMR N++KV ER ++L+ ++D+AD L A F+ A ++++ W Sbjct: 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61 >3ZYM-A nrPDB Length = 310 Score = 50.8 bits (120), Expect = 1e-07, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 21/31 (67%) Query: 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKL 60 R++ Q++V+ V +IM NV+++L R + L Sbjct: 280 DRVRNLQSEVEGVKNIMTQNVERILARGENL 310 >3KYQ-A nrPDB Length = 199 Score = 48.5 bits (114), Expect = 6e-07, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%) Query: 3 ATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSE 62 + AT+ A G P + + QA++DE I+ ++ +LER +KL + Sbjct: 114 GSPATIHYTALDGHLSRYQNPR---EADPMSKVQAELDETKIILHNTMESLLERGEKLDD 170 Query: 63 LDDRADALQAGASQFETSAAK 83 L +++ L + F +A K Sbjct: 171 LVSKSEVLGTQSKAFYKTARK 191 >2NUP-C nrPDB Length = 196 Score = 44.3 bits (103), Expect = 1e-05, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 31/55 (56%) Query: 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKL 84 R L ++ +V IM N+++VL+R + LS LD +A+ L + + ++ A L Sbjct: 134 RNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYL 188 >5X5L-A nrPDB Length = 109 Score = 31.6 bits (70), Expect = 0.089, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Query: 26 LTSNRR-LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKL 84 + N++ L +++ M KV R + ++ + +DAL+ ++ +KL Sbjct: 20 HSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMNHCMNDSDALERTV---DSHVSKL 76 Query: 85 KRKYWWKNLKMMII 98 ++K + + M+I Sbjct: 77 RKKLEEQGIFQMLI 90 >4M35-A nrPDB Length = 168 Score = 30.0 bits (66), Expect = 0.26, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%) Query: 33 QQTQAQVDEVVDIMRVNVDKVLERDQKLSELDD-RADALQAGAS-----QFETSAAKL 84 + Q+DE+VD R D + ER + L + D R+D + A + FE S A + Sbjct: 57 RDLHLQLDELVDFAREGSDTIAERMRALDAVPDGRSDTVAATTTLPEFPAFERSTADV 114 >3VLI-A nrPDB Length = 737 Score = 29.3 bits (64), Expect = 0.39, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 5/62 (8%) Query: 24 PNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAK 83 P T + +VD V + ++ ++ + E L D AD L AS+ Sbjct: 566 PEHTDAPSFDALKPKVDGVRNYIQDDITRPAE-----EVLVDNADLLNLTASELTALIGG 620 Query: 84 LK 85 ++ Sbjct: 621 MR 622 >4L5I-A nrPDB Length = 318 Score = 28.9 bits (63), Expect = 0.47, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 38/62 (61%), Gaps = 3/62 (4%) Query: 35 TQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLK 94 TQ+++ + + + R+ V ++LE+ + + + ++ G ++ET +L+R++ ++++ Sbjct: 33 TQSEISDRLGLTRLKVSRLLEKGHQSGIIRVQINSRFEGCLEYET---QLRRQFSLQHVR 89 Query: 95 MM 96 ++ Sbjct: 90 VI 91 >3HXX-A nrPDB Length = 441 Score = 27.7 bits (60), Expect = 1.1, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Query: 27 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL--SELDDRADALQAGASQFE 78 ++ L++ QAQV++V+ + LER L EL + G + F Sbjct: 343 SAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDGETAFR 396 >4NUY-A nrPDB Length = 899 Score = 27.3 bits (59), Expect = 1.5, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 8/68 (11%) Query: 27 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSE-----LDDRADALQAGASQFETSA 81 T+N+ +Q+ Q+ + D N+D +LE K + D A A+ F + Sbjct: 737 TTNKPIQEASLQIFNIKDY---NLDNLLENPNKFDDEKYWITVDTYSAQGERATAFSNTL 793 Query: 82 AKLKRKYW 89 + KYW Sbjct: 794 NNITSKYW 801 >3PQV-A nrPDB Length = 365 Score = 27.3 bits (59), Expect = 1.6, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAG--ASQFETSAAKLK 85 RL+ T+ Q+DE + ++ KV + L +DD L A F + K+ Sbjct: 309 RLRITKDQIDERFVWLLRDIKKVFGTEILLKPVDDNTTDLIATIKGIGFTNTNKKIA 365 >5YZ0-C nrPDB Length = 791 Score = 27.3 bits (59), Expect = 1.6, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 25/105 (23%) Query: 13 PAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDD------- 65 P+G+ P N L+ QAQ E+ + M+V ++VL ++ ++ L D Sbjct: 98 PSGKNRETVPIK---DNFELEVLQAQYKELKEKMKVMEEEVLIKNGEIKILRDSLHQTES 154 Query: 66 ---------------RADALQAGASQFETSAAKLKRKYWWKNLKM 95 + AL +F L+ + +K+ +M Sbjct: 155 VLEEQRRSHFLLEQEKTQALSDKEKEFSKKLQSLQSELQFKDAEM 199 >4F0L-A nrPDB Length = 458 Score = 27.3 bits (59), Expect = 1.7, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 17/33 (51%) Query: 73 GASQFETSAAKLKRKYWWKNLKMMIILGVICAI 105 + F + L W +N+++ I GVIC+I Sbjct: 9 SSQHFIHARQALLPDGWAENVRIGIAGGVICSI 41 >2E87-A nrPDB Length = 357 Score = 27.0 bits (58), Expect = 1.8, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 18 GPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 72 P N RL++ + +V V +++R N+ KVLER LS L L Sbjct: 30 SSFKPRGNKVKKARLRE-ELRVRTVSNVVRDNLRKVLERTPGLSTLPKFYQELVD 83 >6HIV-Cd nrPDB Length = 440 Score = 26.6 bits (57), Expect = 2.6, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 10/68 (14%) Query: 10 PAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMR-------VNVDKVLERDQKLSE 62 P+APAG+ P R+ QA DE++ + V+ V ER + + Sbjct: 320 PSAPAGDANTPMRRRKKGKLDRVHALQAHQDELLAKLSSQGLKEGVDASSVPERGKIVQS 379 Query: 63 ---LDDRA 67 + D+A Sbjct: 380 RGRIRDKA 387 >2DQ3-A nrPDB Length = 425 Score = 26.6 bits (57), Expect = 2.8, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 24/38 (63%) Query: 50 VDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 87 VDKVLE D++ E+ R +AL++ ++ KLKR+ Sbjct: 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKRE 66 >1F2H-A nrPDB Length = 169 Score = 26.2 bits (56), Expect = 3.5, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 4/75 (5%) Query: 1 MSATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVD-IMRVNVDKVLERDQK 59 + A AA A + P RL A + + I+ D++ RD++ Sbjct: 95 LRAALQRSLAAALA-QHSVPLQLELRAGAERLDALLADEERCLSCILAQQPDRL--RDEE 151 Query: 60 LSELDDRADALQAGA 74 L+EL+D L+ G+ Sbjct: 152 LAELEDALRNLKCGS 166 >4P1T-A nrPDB Length = 746 Score = 26.2 bits (56), Expect = 3.8, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 11/74 (14%) Query: 35 TQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLK 94 T + E + ++ ++ K++E+ + D+ + + WWK ++ Sbjct: 151 TSVNIYEHIGKLQEDIKKIIEKGT--PQQKDKIGGVGSSTENVNA---------WWKGIE 199 Query: 95 MMIILGVICAIILI 108 + V CAI I Sbjct: 200 REMWDAVRCAITKI 213 >3CPZ-A nrPDB Length = 362 Score = 26.2 bits (56), Expect = 3.8, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 11/74 (14%) Query: 35 TQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLK 94 T + E + ++ ++ K++E+ + D+ + + WWK ++ Sbjct: 143 TSVNIYEHIGKLQEDIKKIIEKGT--PQQKDKIGGVGSSTENVNA---------WWKGIE 191 Query: 95 MMIILGVICAIILI 108 + V CAI I Sbjct: 192 REMWDAVRCAITKI 205 >5KR3-A nrPDB Length = 479 Score = 25.8 bits (55), Expect = 4.2, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 8/45 (17%) Query: 11 AAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLE 55 A P G+ APP L T+A+VDE+V I + VD+V + Sbjct: 440 AMPHGDILGFAPP--------LVTTRAEVDEIVGIAKQAVDEVAD 476 >1YF2-A nrPDB Length = 425 Score = 25.8 bits (55), Expect = 4.3, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Query: 22 PPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLER 56 P P L +++ + ++DE ++I+ +++K LER Sbjct: 164 PLPPLEEQKQIAKILTKIDEGIEIIEKSINK-LER 197 >4H9D-A nrPDB Length = 112 Score = 25.4 bits (54), Expect = 5.3, Method: Composition-based stats. Identities = 7/15 (46%), Positives = 10/15 (66%) Query: 78 ETSAAKLKRKYWWKN 92 + A +L+R WWKN Sbjct: 17 KEKARELRRSQWWKN 31 >5KQW-A nrPDB Length = 479 Score = 25.4 bits (54), Expect = 5.7, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 16/21 (76%) Query: 35 TQAQVDEVVDIMRVNVDKVLE 55 T+A+VDE+V I + VD+V + Sbjct: 456 TRAEVDEIVGIAKQAVDEVAD 476 >4CJ6-A nrPDB Length = 317 Score = 25.4 bits (54), Expect = 5.9, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 17 GGPPAPPPNLT---SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAG 73 GP + P T + L + + +E V ++ V ++L+ A+ +Q Sbjct: 34 FGPCSQLPRHTLQKAKDELNEREETREEAVRELQEMVQAQAASGEELAVAV--AERVQEK 91 Query: 74 ASQF 77 S F Sbjct: 92 DSGF 95 >2VG4-A nrPDB Length = 284 Score = 25.4 bits (54), Expect = 5.9, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 13/27 (48%) Query: 2 SATAATVPPAAPAGEGGPPAPPPNLTS 28 ++T V P PA G P PP TS Sbjct: 17 TSTWPVVFPELPAAPYGGPCRPPQHTS 43 >5KR6-A nrPDB Length = 479 Score = 25.4 bits (54), Expect = 6.0, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 16/21 (76%) Query: 35 TQAQVDEVVDIMRVNVDKVLE 55 T+A+VDE+VDI + VD V + Sbjct: 456 TRAEVDEIVDIAKQAVDAVAD 476 >4OR2-A nrPDB Length = 389 Score = 25.0 bits (53), Expect = 7.6, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 7/56 (12%) Query: 64 DDRADALQAGASQFETSAAKLKRKYW-------WKNLKMMIILGVICAIILIIIIV 112 + + QA A Q +T+ +KY W N++ +I + C IL+ + V Sbjct: 84 EGKVKEAQAAAEQLKTTRNAYIQKYLIPVRYLEWSNIESIIAIAFSCLGILVTLFV 139 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.312 0.133 0.342 Lambda K H 0.267 0.0407 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,881,863 Number of Sequences: 36641 Number of extensions: 118681 Number of successful extensions: 707 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 28 Number of HSP's that attempted gapping in prelim test: 619 Number of HSP's gapped (non-prelim): 109 length of query: 116 length of database: 10,336,785 effective HSP length: 81 effective length of query: 35 effective length of database: 7,368,864 effective search space: 257910240 effective search space used: 257910240 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 52 (24.6 bits)