BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P55957
         (195 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

2BID-A nrPDB                                                          400   e-112
2M5I-A nrPDB                                                          273   4e-74
1DDB-A nrPDB                                                          231   2e-61
3A1K-A nrPDB                                                           31   0.31 
3T6N-A nrPDB                                                           29   1.4  
1W9C-A nrPDB                                                           28   2.8  
2X3E-A nrPDB                                                           27   5.1  
1BWO-A nrPDB                                                           27   5.8  
4MOP-A nrPDB                                                           27   7.5  

>2BID-A nrPDB
          Length = 197

 Score =  400 bits (1027), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/195 (100%), Positives = 195/195 (100%)

Query: 1   MDCEVNNGSSLRDECITNLLVFGFLQSCSDNSFRRELDALGHELPVLAPQWEGYDELQTD 60
           MDCEVNNGSSLRDECITNLLVFGFLQSCSDNSFRRELDALGHELPVLAPQWEGYDELQTD
Sbjct: 3   MDCEVNNGSSLRDECITNLLVFGFLQSCSDNSFRRELDALGHELPVLAPQWEGYDELQTD 62

Query: 61  GNRSSHSRLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSE 120
           GNRSSHSRLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSE
Sbjct: 63  GNRSSHSRLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSE 122

Query: 121 EDRNRDLATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQ 180
           EDRNRDLATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQ
Sbjct: 123 EDRNRDLATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQ 182

Query: 181 NLRTYVRSLARNGMD 195
           NLRTYVRSLARNGMD
Sbjct: 183 NLRTYVRSLARNGMD 197


>2M5I-A nrPDB
          Length = 135

 Score =  273 bits (697), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 61  GNRSSHSRLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSE 120
           GNRSSHSRLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSE
Sbjct: 1   GNRSSHSRLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSE 60

Query: 121 EDRNRDLATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQ 180
           EDRNRDLATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQ
Sbjct: 61  EDRNRDLATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQ 120

Query: 181 NLRTYVRSLARNGMD 195
           NLRTYVRSLARNGMD
Sbjct: 121 NLRTYVRSLARNGMD 135


>1DDB-A nrPDB
          Length = 195

 Score =  231 bits (588), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 127/200 (63%), Positives = 150/200 (75%), Gaps = 10/200 (5%)

Query: 1   MDCEVNNGSSLRDECITNLLVFGFLQS--CSDNSFRRELDALGHELPVLAPQWEG--YDE 56
           MD EV+NGS L  + IT+LLVFGFLQS  C+    R+EL+ LG ELPV A  WE    DE
Sbjct: 1   MDSEVSNGSGLGAKHITDLLVFGFLQSSGCT----RQELEVLGRELPVQA-YWEADLEDE 55

Query: 57  LQTDGNRSSHS-RLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRN 115
           LQTDG+++S S   GRIE DSESQE+II NIARHLAQ+GD MD +I P LV  LA Q  N
Sbjct: 56  LQTDGSQASRSFNQGRIEPDSESQEEIIHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMN 115

Query: 116 TSRSEEDRNRDLATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTV 175
            S SEED+   LA AL+++  A+PRDME +K ML++ +LLAKKVASH PSLLRDVFHTTV
Sbjct: 116 GSLSEEDKRNCLAKALDEVKTAFPRDMENDKAMLIMTMLLAKKVASHAPSLLRDVFHTTV 175

Query: 176 NFINQNLRTYVRSLARNGMD 195
           NFINQNL +YVR+L RN MD
Sbjct: 176 NFINQNLFSYVRNLVRNEMD 195


>3A1K-A nrPDB
          Length = 521

 Score = 31.2 bits (69), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 100 SIPPGLVNGLALQLRNTSRSEEDRNR-DLATALEQLLQAYPRDMEK 144
           S+P GLVNGL + +  T R  +D     +  A E+L  A+P   E+
Sbjct: 465 SVPAGLVNGLPVGMMITGRHFDDATVLRVGRAFEKLRGAFPTPAER 510


>3T6N-A nrPDB
          Length = 208

 Score = 28.9 bits (63), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 118 RSEEDRNRDLATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLR 168
           RS+ D++RDLA  L +L   Y  D ++ +T+  L +      A+H P L R
Sbjct: 81  RSDLDKDRDLAATLARLTTVYLADQDRYRTLNELYM-----AAAHRPELQR 126


>1W9C-A nrPDB
          Length = 321

 Score = 28.1 bits (61), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 140 RDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTY 185
           R+ E   TM ++   L   + +  P +   VF  T+N IN++   Y
Sbjct: 90  REPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEY 135


>2X3E-A nrPDB
          Length = 331

 Score = 26.9 bits (58), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 14/90 (15%)

Query: 21  VFGFLQSCSDNSFRRELDALGHELPVLAPQWEGYDELQTDGNRSSHSRLGRIEADSESQE 80
           VFG   +   +S RR LD +G         W+  D          H    RI A    Q 
Sbjct: 218 VFGQAVTQMSDSVRRVLDRVG---------WQASDLHHL----VPHQANTRILAAVADQL 264

Query: 81  DI-IRNIARHLAQVGDSMDRSIPPGLVNGL 109
           D+ +  +  ++A+VG+++  SIP  L +GL
Sbjct: 265 DLPVERVVSNIAEVGNTVAASIPLALAHGL 294


>1BWO-A nrPDB
          Length = 90

 Score = 26.9 bits (58), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 59  TDGNRSSHSRLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPP 103
            DG ++ H++  R ++D +S  + ++ IAR +  + +   RSIPP
Sbjct: 28  CDGVKNLHNQ-ARSQSDRQSACNCLKGIARGIHNLNEDNARSIPP 71


>4MOP-A nrPDB
          Length = 633

 Score = 26.6 bits (57), Expect = 7.5,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 76  SESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRD 126
           S+  ED++ ++    A++G  +  S+P  +  GL L L  T R   D   D
Sbjct: 512 SKEAEDMMTDMCVMSAKIGGFLPGSLPQFMEPGLCLHLGGTHRMGFDEKED 562


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

2BID-A nrPDB                                                          340   3e-94
1DDB-A nrPDB                                                          310   2e-85
2M5I-A nrPDB                                                          226   4e-60

Sequences not found previously or not previously below threshold:

4D0P-A nrPDB                                                           33   0.061
4D10-D nrPDB                                                           33   0.069
5W63-A nrPDB                                                           32   0.19 
1BWO-A nrPDB                                                           29   1.2  
6NU3-c nrPDB                                                           29   1.4  
1W9C-A nrPDB                                                           29   1.5  
2AHV-A nrPDB                                                           28   1.7  
5W61-A nrPDB                                                           28   2.0  
5W5Z-A nrPDB                                                           28   2.0  
2DWP-A nrPDB                                                           28   2.0  
3A1K-A nrPDB                                                           28   2.0  
4BD6-A nrPDB                                                           28   2.8  
6GB2-Bh nrPDB                                                          27   4.7  
5ZIZ-A nrPDB                                                           27   5.0  
4CE4-h nrPDB                                                           27   5.5  
2F23-A nrPDB                                                           27   7.1  


CONVERGED!
>2BID-A nrPDB
          Length = 197

 Score =  340 bits (871), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 195/195 (100%), Positives = 195/195 (100%)

Query: 1   MDCEVNNGSSLRDECITNLLVFGFLQSCSDNSFRRELDALGHELPVLAPQWEGYDELQTD 60
           MDCEVNNGSSLRDECITNLLVFGFLQSCSDNSFRRELDALGHELPVLAPQWEGYDELQTD
Sbjct: 3   MDCEVNNGSSLRDECITNLLVFGFLQSCSDNSFRRELDALGHELPVLAPQWEGYDELQTD 62

Query: 61  GNRSSHSRLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSE 120
           GNRSSHSRLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSE
Sbjct: 63  GNRSSHSRLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSE 122

Query: 121 EDRNRDLATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQ 180
           EDRNRDLATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQ
Sbjct: 123 EDRNRDLATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQ 182

Query: 181 NLRTYVRSLARNGMD 195
           NLRTYVRSLARNGMD
Sbjct: 183 NLRTYVRSLARNGMD 197


>1DDB-A nrPDB
          Length = 195

 Score =  310 bits (795), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 126/198 (63%), Positives = 148/198 (74%), Gaps = 6/198 (3%)

Query: 1   MDCEVNNGSSLRDECITNLLVFGFLQSCSDNSFRRELDALGHELPVLAPQWEG--YDELQ 58
           MD EV+NGS L  + IT+LLVFGFLQS      R+EL+ LG ELPV A  WE    DELQ
Sbjct: 1   MDSEVSNGSGLGAKHITDLLVFGFLQS--SGCTRQELEVLGRELPVQA-YWEADLEDELQ 57

Query: 59  TDGNRSSHS-RLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTS 117
           TDG+++S S   GRIE DSESQE+II NIARHLAQ+GD MD +I P LV  LA Q  N S
Sbjct: 58  TDGSQASRSFNQGRIEPDSESQEEIIHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMNGS 117

Query: 118 RSEEDRNRDLATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNF 177
            SEED+   LA AL+++  A+PRDME +K ML++ +LLAKKVASH PSLLRDVFHTTVNF
Sbjct: 118 LSEEDKRNCLAKALDEVKTAFPRDMENDKAMLIMTMLLAKKVASHAPSLLRDVFHTTVNF 177

Query: 178 INQNLRTYVRSLARNGMD 195
           INQNL +YVR+L RN MD
Sbjct: 178 INQNLFSYVRNLVRNEMD 195


>2M5I-A nrPDB
          Length = 135

 Score =  226 bits (577), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 61  GNRSSHSRLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSE 120
           GNRSSHSRLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSE
Sbjct: 1   GNRSSHSRLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSE 60

Query: 121 EDRNRDLATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQ 180
           EDRNRDLATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQ
Sbjct: 61  EDRNRDLATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQ 120

Query: 181 NLRTYVRSLARNGMD 195
           NLRTYVRSLARNGMD
Sbjct: 121 NLRTYVRSLARNGMD 135


>4D0P-A nrPDB
          Length = 387

 Score = 33.5 bits (75), Expect = 0.061,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 15/100 (15%)

Query: 106 VNGLALQLRNTSRSEED----RNRDLATALE-------QLLQAYPRDMEKEKTMLVLALL 154
           V     QL N+S S +D      + L  A++       + L+A+   M  E   LV++  
Sbjct: 29  VRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQ 88

Query: 155 LAKKVASHTPSL----LRDVFHTTVNFINQNLRTYVRSLA 190
           L     +H P+L     ++++H T+  I   + ++   +A
Sbjct: 89  LLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVA 128


>4D10-D nrPDB
          Length = 410

 Score = 33.1 bits (74), Expect = 0.069,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 15/100 (15%)

Query: 106 VNGLALQLRNTSRSEED----RNRDLATALE-------QLLQAYPRDMEKEKTMLVLALL 154
           V     QL N+S S +D      + L  A++       + L+A+   M  E   LV++  
Sbjct: 9   VRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQ 68

Query: 155 LAKKVASHTPSL----LRDVFHTTVNFINQNLRTYVRSLA 190
           L     +H P+L     ++++H T+  I   + ++   +A
Sbjct: 69  LLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVA 108


>5W63-A nrPDB
          Length = 189

 Score = 31.9 bits (71), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 53/128 (41%), Gaps = 13/128 (10%)

Query: 61  GNRSSHSRLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSE 120
           G   S   LG     SE  +   + +A++L Q+GD +D ++         LQ      + 
Sbjct: 37  GTVVSRHELG----GSELSDPTHKKLAQYLQQIGDELDNNVD--------LQRMLADSAL 84

Query: 121 EDRNRDLATALEQLLQAYPRDMEKEKTMLVLA-LLLAKKVASHTPSLLRDVFHTTVNFIN 179
           +           ++      +  +   +   A  L+ + + +  P ++R + + T++++ 
Sbjct: 85  QPTKEVFVKVAREIFSDGKFNWGRVVALFYFASRLVIEALLTKIPDIIRTIINWTLDYLR 144

Query: 180 QNLRTYVR 187
           +++  ++R
Sbjct: 145 EHVINWIR 152


>1BWO-A nrPDB
          Length = 90

 Score = 29.2 bits (64), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 60  DGNRSSHSRLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPP 103
           DG ++ H    R ++D +S  + ++ IAR +  + +   RSIPP
Sbjct: 29  DGVKNLH-NQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPP 71


>6NU3-c nrPDB
          Length = 332

 Score = 28.9 bits (63), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 17/118 (14%)

Query: 8   GSSLRDECITNLLVFGFLQSCSDNSFRRELDALGHELPVLAPQWEGYDELQTDGNRSSHS 67
           G  L++    +LL   F+ SC   S   +   LG E   +    +   EL   G   S +
Sbjct: 76  GHRLQENFSLDLLKTAFVNSCYIKSEEAKRQQLGIEKEAVLLNLKSNQELSEQGTSFSQT 135

Query: 68  RLGRI----EADSESQ-----------EDIIRNIARHLA--QVGDSMDRSIPPGLVNG 108
            L +       D  ++           E+++ ++AR+LA  Q+  S +  +PP ++  
Sbjct: 136 CLTQFLEDEYPDMPTEGIKNLVDFLTGEEVVCHVARNLAVEQLTLSEEFPVPPAVLQQ 193


>1W9C-A nrPDB
          Length = 321

 Score = 28.9 bits (63), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 131 LEQLLQAYPRDM------EKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQNLRT 184
           L+ +L  Y R++      E   TM ++   L   + +  P +   VF  T+N IN++   
Sbjct: 75  LDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEE 134

Query: 185 Y 185
           Y
Sbjct: 135 Y 135


>2AHV-A nrPDB
          Length = 531

 Score = 28.5 bits (62), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 74  ADSESQEDIIRNIAR-HLAQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRDLATALE 132
           AD   Q    RN++      +GD  DR I P    GL          +  R  DLA   +
Sbjct: 51  ADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISDLAEQNK 110

Query: 133 QLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDV 170
            +   YP+         VL   L +  A+H P ++ D+
Sbjct: 111 IIAYNYPQG--------VLTQTL-RAAAAHQPGIISDI 139


>5W61-A nrPDB
          Length = 194

 Score = 28.5 bits (62), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 45/115 (39%), Gaps = 9/115 (7%)

Query: 75  DSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRDLATALEQL 134
           D   Q+   + ++  L ++GD +D ++         LQ    +   +            +
Sbjct: 48  DPVPQDASTKKLSESLKRIGDELDSNME--------LQRMIAAVDTDSPREVFFRVAADM 99

Query: 135 LQAYPRDMEKEKTMLVLA-LLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYVRS 188
                 +  +   +   A  L+ K +++  P L+R +   T++F+ + L  +++ 
Sbjct: 100 FSDGNFNWGRVVALFYFASKLVLKALSTKVPELIRTIMGWTLDFLRERLLGWIQD 154


>5W5Z-A nrPDB
          Length = 163

 Score = 28.5 bits (62), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 45/115 (39%), Gaps = 9/115 (7%)

Query: 75  DSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRDLATALEQL 134
           D   Q+   + ++  L ++GD +D ++         LQ    +   +            +
Sbjct: 17  DPVPQDASTKKLSESLKRIGDELDSNME--------LQRMIAAVDTDSPREVFFRVAADM 68

Query: 135 LQAYPRDMEKEKTMLVLA-LLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYVRS 188
                 +  +   +   A  L+ K +++  P L+R +   T++F+ + L  +++ 
Sbjct: 69  FSDGNFNWGRVVALFYFASKLVLKALSTKVPELIRTIMGWTLDFLRERLLGWIQD 123


>2DWP-A nrPDB
          Length = 520

 Score = 28.5 bits (62), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 63  RSSHSRLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSEED 122
           R+S + L   E   + +   I +   H+A    ++   +PP +   L  Q    SRS  D
Sbjct: 459 RNSVTPLASPEPTKKPR---INSFEEHVASTSAALPSCLPPEVPTQLPGQNMKGSRSSAD 515

Query: 123 RNR 125
            +R
Sbjct: 516 SSR 518


>3A1K-A nrPDB
          Length = 521

 Score = 28.5 bits (62), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 100 SIPPGLVNGLALQLRNTSRSEEDRNRD-LATALEQLLQAYPRDMEK 144
           S+P GLVNGL + +  T R  +D     +  A E+L  A+P   E+
Sbjct: 465 SVPAGLVNGLPVGMMITGRHFDDATVLRVGRAFEKLRGAFPTPAER 510


>4BD6-A nrPDB
          Length = 174

 Score = 28.1 bits (61), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 45/115 (39%), Gaps = 9/115 (7%)

Query: 75  DSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRDLATALEQL 134
           D   Q+   + ++  L ++GD +D ++         LQ    +   +            +
Sbjct: 48  DPVPQDASTKKLSESLKRIGDELDSNME--------LQRMIAAVDTDSPREVFFRVAADM 99

Query: 135 LQAYPRDMEKEKTMLVLA-LLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYVRS 188
                 +  +   +   A  L+ K +++  P L+R +   T++F+ + L  +++ 
Sbjct: 100 FSDGNFNWGRVVALFYFASKLVLKALSTKVPELIRTIMGWTLDFLRERLLGWIQD 154


>6GB2-Bh nrPDB
          Length = 332

 Score = 27.3 bits (59), Expect = 4.7,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 17/118 (14%)

Query: 8   GSSLRDECITNLLVFGFLQSCSDNSFRRELDALGHELPVLAPQWEGYDELQTDGNRSSHS 67
           G  L++    +LL   F+ SC   S   +   LG +        +   EL   G   S +
Sbjct: 76  GHRLQETFSLDLLKTAFVNSCYIKSEEAKRQKLGIDKEAALLNLKDNQELSEQGISFSQT 135

Query: 68  RLGRIEADS---------------ESQEDIIRNIARHLA--QVGDSMDRSIPPGLVNG 108
            L +   D+                + E+++ ++AR+LA  Q+  S +  +PP ++  
Sbjct: 136 CLTQFFEDAFPDLPTEGVTSLVDFLTSEEVVCHVARNLAVEQLALSAEFPVPPPVLRQ 193


>5ZIZ-A nrPDB
          Length = 323

 Score = 26.9 bits (58), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 6/35 (17%)

Query: 90  LAQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRN 124
           LAQ GD M R      V  LA+Q  N+S S +DR 
Sbjct: 41  LAQAGDKMAR------VTELAVQSNNSSLSPDDRK 69


>4CE4-h nrPDB
          Length = 298

 Score = 26.9 bits (58), Expect = 5.5,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 17/118 (14%)

Query: 8   GSSLRDECITNLLVFGFLQSCSDNSFRRELDALGHELPVLAPQWEGYDELQTDGNRSSHS 67
           G  L++    +LL   F+ SC   S   +   LG +        +   EL   G   S +
Sbjct: 42  GHRLQETFSLDLLKTAFVNSCYIKSEEAKRQKLGIDKEAALLNLKDNQELSEQGISFSQT 101

Query: 68  RLGRIEADS---------------ESQEDIIRNIARHLA--QVGDSMDRSIPPGLVNG 108
            L +   D+                + E+++ ++AR+LA  Q+  S +  +PP ++  
Sbjct: 102 CLTQFFEDAFPDLPTEGVTSLVDFLTSEEVVCHVARNLAVEQLALSAEFPVPPPVLRQ 159


>2F23-A nrPDB
          Length = 156

 Score = 26.6 bits (57), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 31 NSFRRELDALGHELPVLAPQWEGYDELQTDGNRSSHSRLGRIEADSESQEDII 83
              RE + L     +L    E  D+    G  ++     RIEA  +S EDI+
Sbjct: 17 QQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDIL 69


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.313    0.135    0.368 

Lambda     K      H
   0.267   0.0391    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,402,597
Number of Sequences: 36641
Number of extensions: 215343
Number of successful extensions: 690
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 665
Number of HSP's gapped (non-prelim): 35
length of query: 195
length of database: 10,336,785
effective HSP length: 92
effective length of query: 103
effective length of database: 6,965,813
effective search space: 717478739
effective search space used: 717478739
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 56 (26.2 bits)