BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P54791
         (529 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

5V8F-D nrPDB                                                         1088   0.0  
5UJ7-C nrPDB                                                          122   3e-28
4XGC-D nrPDB                                                          118   8e-27
2QBY-A nrPDB                                                           36   0.036
5UJM-A nrPDB                                                           32   0.77 
2D1C-A nrPDB                                                           29   4.5  
2Q98-A nrPDB                                                           28   7.5  
2O4U-X nrPDB                                                           28   8.2  

>5V8F-D nrPDB
          Length = 529

 Score = 1088 bits (2814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/529 (100%), Positives = 529/529 (100%)

Query: 1   MTISEARLSPQVNLLPIKRHSNEEVEETAAILKKRTIDNEKCKDSDPGFGSLQRRLLQQL 60
           MTISEARLSPQVNLLPIKRHSNEEVEETAAILKKRTIDNEKCKDSDPGFGSLQRRLLQQL
Sbjct: 1   MTISEARLSPQVNLLPIKRHSNEEVEETAAILKKRTIDNEKCKDSDPGFGSLQRRLLQQL 60

Query: 61  YGTLPTDEKIIFTYLQDCQQEIDRIIKQSIIQKESHSVILVGPRQSYKTYLLDYELSLLQ 120
           YGTLPTDEKIIFTYLQDCQQEIDRIIKQSIIQKESHSVILVGPRQSYKTYLLDYELSLLQ
Sbjct: 61  YGTLPTDEKIIFTYLQDCQQEIDRIIKQSIIQKESHSVILVGPRQSYKTYLLDYELSLLQ 120

Query: 121 QSYKEQFITIRLNGFIHSEQTAINGIATQLEQQLQKIHGSEEKIDDTSLETISSGSLTEV 180
           QSYKEQFITIRLNGFIHSEQTAINGIATQLEQQLQKIHGSEEKIDDTSLETISSGSLTEV
Sbjct: 121 QSYKEQFITIRLNGFIHSEQTAINGIATQLEQQLQKIHGSEEKIDDTSLETISSGSLTEV 180

Query: 181 FEKILLLLDSTTKTRNEDSGEVDRESITKITVVFIFDEIDTFAGPVRQTLLYNLFDMVEH 240
           FEKILLLLDSTTKTRNEDSGEVDRESITKITVVFIFDEIDTFAGPVRQTLLYNLFDMVEH
Sbjct: 181 FEKILLLLDSTTKTRNEDSGEVDRESITKITVVFIFDEIDTFAGPVRQTLLYNLFDMVEH 240

Query: 241 SRVPVCIFGCTTKLNILEYLEKRVKSRFSQRVIYMPQIQNLDDMVDAVRNLLTVRSEISP 300
           SRVPVCIFGCTTKLNILEYLEKRVKSRFSQRVIYMPQIQNLDDMVDAVRNLLTVRSEISP
Sbjct: 241 SRVPVCIFGCTTKLNILEYLEKRVKSRFSQRVIYMPQIQNLDDMVDAVRNLLTVRSEISP 300

Query: 301 WVSQWNETLEKELSDPRSNLNRHIRMNFETFRSLPTLKNSIIPLVATSKNFGSLCTAIKS 360
           WVSQWNETLEKELSDPRSNLNRHIRMNFETFRSLPTLKNSIIPLVATSKNFGSLCTAIKS
Sbjct: 301 WVSQWNETLEKELSDPRSNLNRHIRMNFETFRSLPTLKNSIIPLVATSKNFGSLCTAIKS 360

Query: 361 CSFLDIYNKNQLSNNLTGRLQSLSDLELAILISAARVALRAKDGSFNFNLAYAEYEKMIK 420
           CSFLDIYNKNQLSNNLTGRLQSLSDLELAILISAARVALRAKDGSFNFNLAYAEYEKMIK
Sbjct: 361 CSFLDIYNKNQLSNNLTGRLQSLSDLELAILISAARVALRAKDGSFNFNLAYAEYEKMIK 420

Query: 421 AINSRIPTVAPTTNVGTGQSTFSIDNTIKLWLKKDVKNVWENLVQLDFFTEKSAVGLRDN 480
           AINSRIPTVAPTTNVGTGQSTFSIDNTIKLWLKKDVKNVWENLVQLDFFTEKSAVGLRDN
Sbjct: 421 AINSRIPTVAPTTNVGTGQSTFSIDNTIKLWLKKDVKNVWENLVQLDFFTEKSAVGLRDN 480

Query: 481 ATAAFYASNYQFQGTMIPFDLRSYQMQIILQELRRIIPKSNMYYSWTQL 529
           ATAAFYASNYQFQGTMIPFDLRSYQMQIILQELRRIIPKSNMYYSWTQL
Sbjct: 481 ATAAFYASNYQFQGTMIPFDLRSYQMQIILQELRRIIPKSNMYYSWTQL 529


>5UJ7-C nrPDB
          Length = 436

 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 175/349 (50%), Gaps = 43/349 (12%)

Query: 80  QEIDRIIKQSIIQKESHSVILVGPRQSYKTYLLDYELSLLQQ--SYKEQFITIRLNGFIH 137
           + +  ++K++ +  ES+SV+++GPR S KT L+++ L  L +     E  + + LNG + 
Sbjct: 45  KHLSELLKRTALHGESNSVLIIGPRGSGKTMLINHALKELMEIEEVSENVLQVHLNGLLQ 104

Query: 138 -SEQTAINGIATQLEQQLQKIHGSEEKIDDTSLETISSGSLTEVFEKILLLLDSTTKTRN 196
            +++ A+  I  QL   L+ + G  +K+  +  E +S             LL++  K   
Sbjct: 105 INDKIALKEITRQL--NLENVVG--DKVFGSFAENLS------------FLLEALKKG-- 146

Query: 197 EDSGEVDRESITKITVVFIFDEIDTFAGPVRQTLLYNLFDMVEHSRVPVCIFGCTTKLNI 256
                 DR S     V+FI DE D FA    QTLLYNLFD+ + ++ P+ + G T +L+I
Sbjct: 147 ------DRTS--SCPVIFILDEFDLFAHHKNQTLLYNLFDISQSAQTPIAVIGLTCRLDI 198

Query: 257 LEYLEKRVKSRFSQRVIYMPQIQNLDDMVDAVRNLLTVRSEISP--WVSQWNETLEKELS 314
           LE LEKRVKSRFS R I++         V   +  L++ +E     +  +WNE ++  LS
Sbjct: 199 LELLEKRVKSRFSHRQIHLMNSFGFPQYVKIFKEQLSLPAEFPDKVFAEKWNENVQY-LS 257

Query: 315 DPRS---NLNRHIRMNFETFRSLPTLKNSIIPLVATSKNFGSLCTAIKSCSFLDIYNKNQ 371
           + RS    L +H  ++ +  RSL  L    +  V  S  F +    +++     + +K  
Sbjct: 258 EDRSVQEVLQKHFNIS-KNLRSLHMLLMLALNRVTASHPFMTAVDLMEASQLCSMDSKAN 316

Query: 372 LSNNLTGRLQSLSDLELAILISAARVALRAKDGSFNFNLAYAEYEKMIK 420
           +       +  LS LE+ ++I+   +    ++  FNF + Y E++K ++
Sbjct: 317 I-------VHGLSVLEICLIIAMKHLNDIYEEEPFNFQMVYNEFQKFVQ 358


>4XGC-D nrPDB
          Length = 459

 Score =  118 bits (295), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 165/366 (45%), Gaps = 72/366 (19%)

Query: 94  ESHSVILVGPRQSYKTYLLDYELS--LLQQSYKEQFITIRLNGFIHSE-QTAINGIATQL 150
           ES+S++L+GPR S KT L++  L+  L  +S+ E  + + L+G +H++ + A+  I  Q+
Sbjct: 48  ESNSLLLLGPRGSGKTTLINSVLADLLPNKSFGENTLIVHLDGNLHTDDRVALKSITVQM 107

Query: 151 EQQLQKIHGSEEKIDDTSLETISSGSLTEVFEKILLLLDSTTKTRNEDSGEVDRESITKI 210
           +                 LE  + G +   F + L  L    K   + S           
Sbjct: 108 Q-----------------LENAADGKVFGSFAENLAFLLQCLKAGGKHSK---------- 140

Query: 211 TVVFIFDEIDTFAGPVRQTLLYNLFDMVEHSRVPVCIFGCTTKLNILEYLEKRVKSRFSQ 270
           +V+FI +E D F     QTLLYNLFD+ + ++ P+C+ G T +L+++E LEKRVKSRFS 
Sbjct: 141 SVIFILEEFDLFCAHHNQTLLYNLFDVSQSAQAPICVLGVTCRLDVIELLEKRVKSRFSH 200

Query: 271 RVIYM-PQIQNLDDMVDAVRNLLTV---------------------------RSEISP-- 300
           R +++ P ++  +D VD  R+LL++                           R+   P  
Sbjct: 201 RQVFLFPSLRRFEDYVDLCRDLLSLPTGNSLLLAAEKIYNLQNIQSGALYFSRNHFDPGE 260

Query: 301 ------WVSQWNETLEKELSDPRSNLNRHIRMNFETFRSLPTLKNSIIPLVATSKNFGSL 354
                     WN+ + K L+  ++        +F+   S   LKN +  LVA  +     
Sbjct: 261 YGFSPRLRDAWNKQICKVLATQQARSTLQALHDFDI--SEAYLKNFLFRLVAHLRPQSPH 318

Query: 355 CTAIKSCSFLDIYNKNQLSNNLTGRLQSLSDLELAILISAARVALRAKDGSFNFNLAYAE 414
            TA K  +    +  +     L G    LS LEL ++I+    +      SFNF + YA 
Sbjct: 319 ITAEKMAAVGSQFEGDDKIELLCG----LSVLELCLIIAIKHHSQIYDRDSFNFEIIYAR 374

Query: 415 YEKMIK 420
           + K  K
Sbjct: 375 FSKFAK 380


>2QBY-A nrPDB
          Length = 386

 Score = 36.2 bits (82), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 212 VVFIFDEIDTFAGPVRQTLLYNLFDM-VEHSRVPVCIFGCTTKLNILEYLEKRVKSRFSQ 270
           VV + DEID F       +LY L  +  E ++  +   G T  +  ++ L+ RVKS  S+
Sbjct: 130 VVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSE 189

Query: 271 RVIYMPQIQNLDDMVDAVRNLLTVRSEIS 299
             I  P   N +++ D    +LT R++++
Sbjct: 190 EEIIFPP-YNAEELED----ILTKRAQMA 213


>5UJM-A nrPDB
          Length = 522

 Score = 32.0 bits (71), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 179 EVFEKILLLLDSTTKTRNEDSGEVDRESITKI----TVVFIFDEIDTFAGPVRQTLLYNL 234
           +V+ +IL  L     T N  +  + ++  T+     T V + DE+D      +Q ++YNL
Sbjct: 239 QVYVQILQKLTGQKATANHAAELLAKQFCTRGSPQETTVLLVDELDILWTH-KQDIMYNL 297

Query: 235 FDMVEHSRVPVCIFGCTTKLNILE-YLEKRVKSRFS-QRVIYMP 276
           FD   H    + +      +++ E  +  RV SR    R+ + P
Sbjct: 298 FDWPTHKEARLVVLAIANTMDLPERIMMNRVSSRLGLTRMCFQP 341


>2D1C-A nrPDB
          Length = 496

 Score = 29.3 bits (64), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 250 CTTKLNILEYLEKRVKSRFSQRVIYMPQIQNLDDMVDAVRNLLTVRSE 297
           C TK NI++  E  +K  F Q     P I+ +  +VD   + L  R E
Sbjct: 188 CATKSNIMKLAEGTLKRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPE 235


>2Q98-A nrPDB
          Length = 191

 Score = 28.5 bits (62), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 1   MTISEARLSPQVNLLPIKRHSNEEVEETAAILKKRTIDNEKC 42
           M   E+RLS   NLL   R  + +++    +LK R I N  C
Sbjct: 150 MADEESRLSAYYNLLHCLRRDSHKIDNYLKLLKCRIIHNNNC 191


>2O4U-X nrPDB
          Length = 334

 Score = 28.5 bits (62), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 365 DIYNKNQLSNNLTGRLQSLSDLELAILISAARVALRAKDGSFNFNL--AYAEYEKMIKAI 422
            I +   +S++ T  LQ+L   E  ++  AAR   RAK+ +   ++  AY  YE++ K  
Sbjct: 6   GIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDP 65

Query: 423 NSRIPTVA 430
           N  +  V 
Sbjct: 66  NVEVAYVG 73


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

5V8F-D nrPDB                                                          864   0.0  
4XGC-D nrPDB                                                          393   e-109
5UJ7-C nrPDB                                                          387   e-108

Sequences not found previously or not previously below threshold:

2QBY-A nrPDB                                                           57   3e-08
5UJM-A nrPDB                                                           46   4e-05
2V1U-A nrPDB                                                           41   0.001
5V8F-9 nrPDB                                                           39   0.008
5UJ7-A nrPDB                                                           38   0.008
5ZFR-A nrPDB                                                           34   0.20 
4U00-A nrPDB                                                           33   0.30 
5L22-B nrPDB                                                           33   0.36 
5TSG-B nrPDB                                                           32   0.44 
5V8F-A nrPDB                                                           32   0.53 
2QBY-B nrPDB                                                           32   0.58 
5FL3-A nrPDB                                                           32   0.59 
6B4O-A nrPDB                                                           32   0.87 
5V6R-A nrPDB                                                           31   0.98 
5W0T-A nrPDB                                                           31   1.5  
3QGY-A nrPDB                                                           30   1.8  
1IQP-A nrPDB                                                           30   2.0  
6HA8-V nrPDB                                                           30   2.3  
2YBX-A nrPDB                                                           30   2.3  
3GTD-A nrPDB                                                           30   2.4  
5DO7-A nrPDB                                                           30   2.5  
1SAV-A nrPDB                                                           30   2.6  
6QUZ-B nrPDB                                                           30   2.6  
5DGX-A nrPDB                                                           30   2.9  
4Q7L-A nrPDB                                                           30   2.9  
3PXI-A nrPDB                                                           30   3.0  
3PVS-A nrPDB                                                           30   3.6  
5XU1-A nrPDB                                                           29   3.8  
3UPU-A nrPDB                                                           29   4.3  
4ZPX-A nrPDB                                                           29   5.7  
3K1J-A nrPDB                                                           29   5.7  
2QAG-C nrPDB                                                           29   5.7  
3JC8-Ba nrPDB                                                          29   5.8  
3VX4-A nrPDB                                                           29   6.0  
2Q98-A nrPDB                                                           29   6.2  
4MKI-B nrPDB                                                           29   6.3  
1HXR-A nrPDB                                                           29   6.8  
2EYU-A nrPDB                                                           29   6.9  
2EWW-A nrPDB                                                           29   7.3  
5Z6Q-A nrPDB                                                           29   7.3  
5BQ5-A nrPDB                                                           29   7.3  
2WUI-A nrPDB                                                           29   7.3  
3GZD-A nrPDB                                                           29   7.5  
2OUK-A nrPDB                                                           28   8.4  
1SXJ-D nrPDB                                                           28   9.7  
5HAF-A nrPDB                                                           28   10.0 

>5V8F-D nrPDB
          Length = 529

 Score =  864 bits (2233), Expect = 0.0,   Method: Composition-based stats.
 Identities = 529/529 (100%), Positives = 529/529 (100%)

Query: 1   MTISEARLSPQVNLLPIKRHSNEEVEETAAILKKRTIDNEKCKDSDPGFGSLQRRLLQQL 60
           MTISEARLSPQVNLLPIKRHSNEEVEETAAILKKRTIDNEKCKDSDPGFGSLQRRLLQQL
Sbjct: 1   MTISEARLSPQVNLLPIKRHSNEEVEETAAILKKRTIDNEKCKDSDPGFGSLQRRLLQQL 60

Query: 61  YGTLPTDEKIIFTYLQDCQQEIDRIIKQSIIQKESHSVILVGPRQSYKTYLLDYELSLLQ 120
           YGTLPTDEKIIFTYLQDCQQEIDRIIKQSIIQKESHSVILVGPRQSYKTYLLDYELSLLQ
Sbjct: 61  YGTLPTDEKIIFTYLQDCQQEIDRIIKQSIIQKESHSVILVGPRQSYKTYLLDYELSLLQ 120

Query: 121 QSYKEQFITIRLNGFIHSEQTAINGIATQLEQQLQKIHGSEEKIDDTSLETISSGSLTEV 180
           QSYKEQFITIRLNGFIHSEQTAINGIATQLEQQLQKIHGSEEKIDDTSLETISSGSLTEV
Sbjct: 121 QSYKEQFITIRLNGFIHSEQTAINGIATQLEQQLQKIHGSEEKIDDTSLETISSGSLTEV 180

Query: 181 FEKILLLLDSTTKTRNEDSGEVDRESITKITVVFIFDEIDTFAGPVRQTLLYNLFDMVEH 240
           FEKILLLLDSTTKTRNEDSGEVDRESITKITVVFIFDEIDTFAGPVRQTLLYNLFDMVEH
Sbjct: 181 FEKILLLLDSTTKTRNEDSGEVDRESITKITVVFIFDEIDTFAGPVRQTLLYNLFDMVEH 240

Query: 241 SRVPVCIFGCTTKLNILEYLEKRVKSRFSQRVIYMPQIQNLDDMVDAVRNLLTVRSEISP 300
           SRVPVCIFGCTTKLNILEYLEKRVKSRFSQRVIYMPQIQNLDDMVDAVRNLLTVRSEISP
Sbjct: 241 SRVPVCIFGCTTKLNILEYLEKRVKSRFSQRVIYMPQIQNLDDMVDAVRNLLTVRSEISP 300

Query: 301 WVSQWNETLEKELSDPRSNLNRHIRMNFETFRSLPTLKNSIIPLVATSKNFGSLCTAIKS 360
           WVSQWNETLEKELSDPRSNLNRHIRMNFETFRSLPTLKNSIIPLVATSKNFGSLCTAIKS
Sbjct: 301 WVSQWNETLEKELSDPRSNLNRHIRMNFETFRSLPTLKNSIIPLVATSKNFGSLCTAIKS 360

Query: 361 CSFLDIYNKNQLSNNLTGRLQSLSDLELAILISAARVALRAKDGSFNFNLAYAEYEKMIK 420
           CSFLDIYNKNQLSNNLTGRLQSLSDLELAILISAARVALRAKDGSFNFNLAYAEYEKMIK
Sbjct: 361 CSFLDIYNKNQLSNNLTGRLQSLSDLELAILISAARVALRAKDGSFNFNLAYAEYEKMIK 420

Query: 421 AINSRIPTVAPTTNVGTGQSTFSIDNTIKLWLKKDVKNVWENLVQLDFFTEKSAVGLRDN 480
           AINSRIPTVAPTTNVGTGQSTFSIDNTIKLWLKKDVKNVWENLVQLDFFTEKSAVGLRDN
Sbjct: 421 AINSRIPTVAPTTNVGTGQSTFSIDNTIKLWLKKDVKNVWENLVQLDFFTEKSAVGLRDN 480

Query: 481 ATAAFYASNYQFQGTMIPFDLRSYQMQIILQELRRIIPKSNMYYSWTQL 529
           ATAAFYASNYQFQGTMIPFDLRSYQMQIILQELRRIIPKSNMYYSWTQL
Sbjct: 481 ATAAFYASNYQFQGTMIPFDLRSYQMQIILQELRRIIPKSNMYYSWTQL 529


>4XGC-D nrPDB
          Length = 459

 Score =  393 bits (1009), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/406 (26%), Positives = 183/406 (45%), Gaps = 76/406 (18%)

Query: 54  RRLLQQLYGTLPTDEKIIFTYLQDCQQEIDRIIKQSIIQKESHSVILVGPRQSYKTYLLD 113
           RR L++    L  D   +  Y ++ +  +  +++++    ES+S++L+GPR S KT L++
Sbjct: 12  RRFLKE---RLQRDYTTLRGYAKE-RSNVRLLLQRTAEMGESNSLLLLGPRGSGKTTLIN 67

Query: 114 YELS--LLQQSYKEQFITIRLNGFIHSE-QTAINGIATQLEQQLQKIHGSEEKIDDTSLE 170
             L+  L  +S+ E  + + L+G +H++ + A+  I  Q++                 LE
Sbjct: 68  SVLADLLPNKSFGENTLIVHLDGNLHTDDRVALKSITVQMQ-----------------LE 110

Query: 171 TISSGSLTEVFEKILLLLDSTTKTRNEDSGEVDRESITKITVVFIFDEIDTFAGPVRQTL 230
             + G +   F + L  L    K   + S           +V+FI +E D F     QTL
Sbjct: 111 NAADGKVFGSFAENLAFLLQCLKAGGKHSK----------SVIFILEEFDLFCAHHNQTL 160

Query: 231 LYNLFDMVEHSRVPVCIFGCTTKLNILEYLEKRVKSRFSQRVIYM-PQIQNLDDMVDAVR 289
           LYNLFD+ + ++ P+C+ G T +L+++E LEKRVKSRFS R +++ P ++  +D VD  R
Sbjct: 161 LYNLFDVSQSAQAPICVLGVTCRLDVIELLEKRVKSRFSHRQVFLFPSLRRFEDYVDLCR 220

Query: 290 NLLTV---------------------------RSEISP--------WVSQWNETLEKELS 314
           +LL++                           R+   P            WN+ + K L+
Sbjct: 221 DLLSLPTGNSLLLAAEKIYNLQNIQSGALYFSRNHFDPGEYGFSPRLRDAWNKQICKVLA 280

Query: 315 DPRSNLNRHIRMNFETFRSLPTLKNSIIPLVATSKNFGSLCTAIKSCSFLDIYNKNQLSN 374
             ++        +F+   S   LKN +  LVA  +      TA K  +    +  +    
Sbjct: 281 TQQARSTLQALHDFDI--SEAYLKNFLFRLVAHLRPQSPHITAEKMAAVGSQFEGDDKIE 338

Query: 375 NLTGRLQSLSDLELAILISAARVALRAKDGSFNFNLAYAEYEKMIK 420
            L G    LS LEL ++I+    +      SFNF + YA + K  K
Sbjct: 339 LLCG----LSVLELCLIIAIKHHSQIYDRDSFNFEIIYARFSKFAK 380


>5UJ7-C nrPDB
          Length = 436

 Score =  387 bits (994), Expect = e-108,   Method: Composition-based stats.
 Identities = 100/349 (28%), Positives = 175/349 (50%), Gaps = 43/349 (12%)

Query: 80  QEIDRIIKQSIIQKESHSVILVGPRQSYKTYLLDYELSLLQQ--SYKEQFITIRLNGFIH 137
           + +  ++K++ +  ES+SV+++GPR S KT L+++ L  L +     E  + + LNG + 
Sbjct: 45  KHLSELLKRTALHGESNSVLIIGPRGSGKTMLINHALKELMEIEEVSENVLQVHLNGLLQ 104

Query: 138 -SEQTAINGIATQLEQQLQKIHGSEEKIDDTSLETISSGSLTEVFEKILLLLDSTTKTRN 196
            +++ A+  I  QL   L+ + G  +K+  +  E +S             LL++  K   
Sbjct: 105 INDKIALKEITRQL--NLENVVG--DKVFGSFAENLS------------FLLEALKKG-- 146

Query: 197 EDSGEVDRESITKITVVFIFDEIDTFAGPVRQTLLYNLFDMVEHSRVPVCIFGCTTKLNI 256
                 DR S     V+FI DE D FA    QTLLYNLFD+ + ++ P+ + G T +L+I
Sbjct: 147 ------DRTS--SCPVIFILDEFDLFAHHKNQTLLYNLFDISQSAQTPIAVIGLTCRLDI 198

Query: 257 LEYLEKRVKSRFSQRVIYMPQIQNLDDMVDAVRNLLTVRSEISP--WVSQWNETLEKELS 314
           LE LEKRVKSRFS R I++         V   +  L++ +E     +  +WNE ++  LS
Sbjct: 199 LELLEKRVKSRFSHRQIHLMNSFGFPQYVKIFKEQLSLPAEFPDKVFAEKWNENVQY-LS 257

Query: 315 DPRS---NLNRHIRMNFETFRSLPTLKNSIIPLVATSKNFGSLCTAIKSCSFLDIYNKNQ 371
           + RS    L +H  ++ +  RSL  L    +  V  S  F +    +++     + +K  
Sbjct: 258 EDRSVQEVLQKHFNIS-KNLRSLHMLLMLALNRVTASHPFMTAVDLMEASQLCSMDSKAN 316

Query: 372 LSNNLTGRLQSLSDLELAILISAARVALRAKDGSFNFNLAYAEYEKMIK 420
           +       +  LS LE+ ++I+   +    ++  FNF + Y E++K ++
Sbjct: 317 I-------VHGLSVLEICLIIAMKHLNDIYEEEPFNFQMVYNEFQKFVQ 358


>2QBY-A nrPDB
          Length = 386

 Score = 56.7 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 99/258 (38%), Gaps = 38/258 (14%)

Query: 76  QDCQQEIDRIIKQSIIQKESHSVILVGPRQSYKTYLLDYELSLLQQSYKEQFITIRLNGF 135
           +D  ++I  I+     +++ +++ + G   + KT ++ + LS L + +  +F  + +N  
Sbjct: 26  EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-- 83

Query: 136 IHSEQTAINGIATQLEQQLQKIHGSEEKIDDTSLETISSGSLTEVFEKILLLLDSTTKTR 195
                        Q++        +  ++    LE++    +      I  L     K  
Sbjct: 84  -----------TRQID--------TPYRVLADLLESL-DVKVPFTGLSIAELYRRLVKAV 123

Query: 196 NEDSGEVDRESITKITVVFIFDEIDTFAGPVRQTLLYNLFDM-VEHSRVPVCIFGCTTKL 254
            +   +          VV + DEID F       +LY L  +  E ++  +   G T  +
Sbjct: 124 RDYGSQ----------VVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173

Query: 255 NILEYLEKRVKSRFSQRVIYMPQIQNLDDMVDAVRNLLTVRSEISPWVSQWNETLEKELS 314
             ++ L+ RVKS  S+  I  P         + + ++LT R++++       + + K  +
Sbjct: 174 KFVDLLDPRVKSSLSEEEIIFP-----PYNAEELEDILTKRAQMAFKPGVLPDNVIKLCA 228

Query: 315 DPRSNLNRHIRMNFETFR 332
              +  +   R   +  R
Sbjct: 229 ALAAREHGDARRALDLLR 246


>5UJM-A nrPDB
          Length = 522

 Score = 45.9 bits (107), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 121/364 (33%), Gaps = 61/364 (16%)

Query: 80  QEIDRIIKQSIIQKESHSVILVGPRQSYKTYLLDYELSLLQQSYKEQ----FITIRLNGF 135
           Q+I   ++  ++      + + G   + KT  +   +  LQQ+ +      F  I +NG 
Sbjct: 173 QDIYNFVESKLLDHTGGCMYISGVPGTGKTATVHEVIRCLQQAAQANDVPPFQYIEVNGM 232

Query: 136 IHSEQTAINGIATQLEQQLQKIHGSEEKIDDTSLETISSGSLTEVFEKILLLLDSTTKTR 195
             +E                       ++    L+ ++    T      LL     T+  
Sbjct: 233 KLTE---------------------PHQVYVQILQKLTGQKATANHAAELLAKQFCTRGS 271

Query: 196 NEDSGEVDRESITKITVVFIFDEIDTFAGPVRQTLLYNLFDMVEHSRVPVCIFGCTTKLN 255
            ++            T V + DE+D       Q ++YNLFD   H    + +      ++
Sbjct: 272 PQE------------TTVLLVDELDILWTHK-QDIMYNLFDWPTHKEARLVVLAIANTMD 318

Query: 256 ILE-YLEKRVKSRFS-QRVIYMPQIQNLDDMVDAVRNLLTVRSEISPWVSQWNETLEKEL 313
           + E  +  RV SR    R+ + P       +   +R+ L           Q        +
Sbjct: 319 LPERIMMNRVSSRLGLTRMCFQP--YTYSQLQQILRSRLKHLKAFEDDAIQ-------LV 369

Query: 314 SDPRSNLNRHIRMNFETFRSLPTLKNSIIPLVATSKNFGSLCTAI--KSCSFLDIYNKNQ 371
           +   + L+   R   +  R    +        +  K        I     +  ++++ + 
Sbjct: 370 ARKVAALSGDARRCLDICRRATEICEF-----SQQKPDSPGLVTIAHSMEAVDEMFSSSY 424

Query: 372 LSNNLTGRLQSLSDLELAILISAARVALRAKDGSFNFNLAYAEYEKMIKAINSRIPTVAP 431
           ++      +++ S LE + L +      R+      F   Y+++  + +      PT++ 
Sbjct: 425 IT-----AIKNSSVLEQSFLRAILAEFRRSGLEEATFQQIYSQHVALCRMEGLPYPTMSE 479

Query: 432 TTNV 435
           T  V
Sbjct: 480 TMAV 483


>2V1U-A nrPDB
          Length = 387

 Score = 40.9 bits (94), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 192 TKTRNEDSGEVDRESITKITVVFIFDEIDTFAG-PVRQTLLYNLFDMVEH--SRVPVCIF 248
                     V R S  +   + + DEID     P  Q LLY +  + +    RV V + 
Sbjct: 112 LSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLV 171

Query: 249 GCTTKLNILEYLEKRVKSRFSQRVIYMPQIQNLDDMVDAVRNLLTVRSE 297
           G T  L  +E LE RVKS   +  +  P           +R++L  R+E
Sbjct: 172 GITNSLGFVENLEPRVKSSLGEVELVFP-----PYTAPQLRDILETRAE 215


>5V8F-9 nrPDB
          Length = 513

 Score = 38.6 bits (88), Expect = 0.008,   Method: Composition-based stats.
 Identities = 64/387 (16%), Positives = 124/387 (32%), Gaps = 55/387 (14%)

Query: 80  QEIDRIIKQSIIQKESHSVILVGPRQSYKTYLLDYELSLLQQSYKEQFITIRLNGFIHSE 139
           +++   + ++I +  S S+ + GP  + KT  LD  +    QS      T R    +   
Sbjct: 86  EQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHT 145

Query: 140 QTAINGIATQLEQQLQKIHGSEEKIDDTSLETISSGSLTEVFEKILLLLD-----STTKT 194
              +  ++       +   G  E +  TS+  IS G  + +F+KI          +    
Sbjct: 146 NPNLQNLS-----WFELPDGRLESVAVTSINCISLGEPSSIFQKIFDSFQDLNGPTLQIK 200

Query: 195 RNEDSGEVDRESITKITVVFIFDEIDTFAGPVR------QTLLYNLFDMVEHSRVPVCIF 248
             +   +       K T V + DE+D             +T+L  LF + +   V   + 
Sbjct: 201 NMQHLQKFLEPYHKKTTFVVVLDEMDRLLHANTSETQSVRTIL-ELFLLAKLPTVSFVLI 259

Query: 249 GCTTKLNILEYLEKRVKSRFSQRVIYMPQIQNLDDMVD------AVRNLLTVRS-EISPW 301
           G    L+    ++ R  SR +     +PQ                ++ + ++ +    P 
Sbjct: 260 GMANSLD----MKDRFLSRLNLDRGLLPQTIVFQPYTAEQMYEIVIQKMSSLPTIIFQPM 315

Query: 302 VSQWNETLEKELSDPRSNLNRHIRMNFETFRSLPTLKNSIIP--LVATSKNFGSLCTAIK 359
             ++        +     L   +R + E +        S     L +         + +K
Sbjct: 316 AIKFAAKKCAGNTGDLRKLFDVLRGSIEIYELEKRFLLSPTRGSLNSAQVPLTPTTSPVK 375

Query: 360 --------------SCSFLDIYNKNQLSNNLTGRLQSLSDLELAILI-SAARVALRAKDG 404
                                +  N  +     +L     L L  +I S    +    D 
Sbjct: 376 KSYPEPQGKIGLNYIAKVFSKFVNNNSTRTRIAKLNIQQKLILCTIIQSLKLNSDATIDE 435

Query: 405 SFNFNLAYAEYEKMIKAINSRIPTVAP 431
           SF+           IKAI ++  T+AP
Sbjct: 436 SFD---------HYIKAI-TKTDTLAP 452


>5UJ7-A nrPDB
          Length = 391

 Score = 38.2 bits (87), Expect = 0.008,   Method: Composition-based stats.
 Identities = 51/364 (14%), Positives = 120/364 (32%), Gaps = 61/364 (16%)

Query: 80  QEIDRIIKQSIIQKESHSVILVGPRQSYKTYLLDYELSLLQQSYKEQ----FITIRLNGF 135
           Q+I   ++  ++      + + G   + KT  +   +  LQQ+ +      F  I +NG 
Sbjct: 42  QDIYNFVESKLLDHTGGCMYISGVPGTGKTATVHEVIRCLQQAAQANDVPPFQYIEVNGM 101

Query: 136 IHSEQTAINGIATQLEQQLQKIHGSEEKIDDTSLETISSGSLTEVFEKILLLLDSTTKTR 195
             +E                       ++    L+ ++    T      LL     T+  
Sbjct: 102 KLTE---------------------PHQVYVQILQKLTGQKATANHAAELLAKQFCTRGS 140

Query: 196 NEDSGEVDRESITKITVVFIFDEIDTFAGPVRQTLLYNLFDMVEHSRVPVCIFGCTTKLN 255
            +++  +  + +  +                +Q ++YNLFD   H    + +      ++
Sbjct: 141 PQETTVLLVDELDLLWT-------------HKQDIMYNLFDWPTHKEARLVVLAIANTMD 187

Query: 256 ILE-YLEKRVKSRFS-QRVIYMPQIQNLDDMVDAVRNLLTVRSEISPWVSQWNETLEKEL 313
           + E  +  RV SR    R+ + P       +   +R+ L           Q        +
Sbjct: 188 LPERIMMNRVSSRLGLTRMCFQP--YTYSQLQQILRSRLKHLKAFEDDAIQ-------LV 238

Query: 314 SDPRSNLNRHIRMNFETFRSLPTLKNSIIPLVATSKNFGSLCT--AIKSCSFLDIYNKNQ 371
           +   + L+   R   +  R    +        +  K         A    +  ++++ + 
Sbjct: 239 ARKVAALSGDARRCLDICRRATEICEF-----SQQKPDSPGLVTIAHSMEAVDEMFSSSY 293

Query: 372 LSNNLTGRLQSLSDLELAILISAARVALRAKDGSFNFNLAYAEYEKMIKAINSRIPTVAP 431
           ++      +++ S LE + L +      R+      F   Y+++  + +      PT++ 
Sbjct: 294 IT-----AIKNSSVLEQSFLRAILAEFRRSGLEEATFQQIYSQHVALCRMEGLPYPTMSE 348

Query: 432 TTNV 435
           T  V
Sbjct: 349 TMAV 352


>5ZFR-A nrPDB
          Length = 582

 Score = 33.6 bits (75), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 88  QSIIQKESHSVILVGPRQSYKTYLLDYELSLLQQS 122
           +  I K    V++ GP  S KT  L   LS L ++
Sbjct: 325 KEAIHKPFGMVLVTGPTGSGKTVSLYSALSELNKT 359


>4U00-A nrPDB
          Length = 244

 Score = 33.2 bits (74), Expect = 0.30,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 98  VILVGPRQSYKTYLLDYELSLLQQSYKEQFITIRLNGFIHSEQTAINGIATQLEQQLQK 156
           ++++GP  S K+ L+     L  + ++E  + +  +G    +  A+  I  ++    Q+
Sbjct: 33  LVIIGPSGSGKSTLIRTINRL--EDFQEGEVVV--DGLSVKDDRALREIRREVGMVFQQ 87


>5L22-B nrPDB
          Length = 572

 Score = 32.8 bits (73), Expect = 0.36,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 65/181 (35%), Gaps = 22/181 (12%)

Query: 98  VILVGPRQSYKTYLLDYELSLLQQSYKEQFITIRLNG--FIHSEQTAINGIATQLEQQLQ 155
           V ++GP  S K+ L+   L +    +     T+ ++G      ++         L Q ++
Sbjct: 362 VAIIGPSGSGKSSLVRTILGIWLPVHG----TVEIDGADLKQWDRDYFGKFVGYLPQDIE 417

Query: 156 KIHGSEEKIDDTSLE-----TISSGSLTEVFEKILLLLD---------STTKTRNEDSGE 201
              G+  +      E      I +  L+   + I+ L D           T +  +    
Sbjct: 418 LFEGTVAENIARFGELDSEKIIEAAKLSGAHDVIIKLPDGYDTYIGPGGITLSGGQRQRI 477

Query: 202 VDRESITKITVVFIFDEIDTFAGPVRQTLLYNLFDMVEHSRVPVCIFGCTTKLNILEYLE 261
               ++     + I DE D+      +  LYN   ++E  +  V     + ++ +L  ++
Sbjct: 478 ALARALYGNPRIVILDEPDSNLDEQGEQALYNA--LIELKKRKVTTIIVSHRIRLLNLVD 535

Query: 262 K 262
           K
Sbjct: 536 K 536


>5TSG-B nrPDB
          Length = 588

 Score = 32.4 bits (72), Expect = 0.44,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 88  QSIIQKESHSVILVGPRQSYKTYLLDYELSLLQQS 122
           +  I K    V++ GP  S KT  L   L  L ++
Sbjct: 331 KEAIHKPFGMVLVTGPTGSGKTVSLYSALGELNKT 365


>5V8F-A nrPDB
          Length = 913

 Score = 32.4 bits (72), Expect = 0.53,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 39/191 (20%)

Query: 89  SIIQKESHSVILV-GPRQSYKTYLLDYELSLLQQSYKE----QFITIRLNGFIHSEQTAI 143
           S I+ +S + I V G     KT  +   +  L  S  +     F+ + +NG         
Sbjct: 465 SAIESDSATTIYVAGTPGVGKTLTVREVVKELLSSSAQREIPDFLYVEINGL-------- 516

Query: 144 NGIATQLEQQLQKIHGSEEKIDDTSLETISSGSLTEVFEKILLLLDSTTKTRNEDSGEVD 203
                ++ +          K+    L   +S    E + K +                  
Sbjct: 517 -----KMVKPTDCYETLWNKVSGERLTWAASMESLEFYFKRV------------------ 553

Query: 204 RESITKITVVFIFDEIDTFAGPVRQTLLYNLFDMVEHSRVPVCIFGCTTKLNILE-YLEK 262
                K T+V + DE+D       Q ++YN F+   +    + +      +++ E  L  
Sbjct: 554 -PKNKKKTIVVLLDELDAMVT-KSQDIMYNFFNWTTYENAKLIVIAVANTMDLPERQLGN 611

Query: 263 RVKSRFSQRVI 273
           ++ SR     I
Sbjct: 612 KITSRIGFTRI 622


>2QBY-B nrPDB
          Length = 384

 Score = 32.0 bits (71), Expect = 0.58,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 64/181 (35%), Gaps = 32/181 (17%)

Query: 97  SVILVGPRQSYKTYLLDYELSLLQQSYKEQFITIRLNGFIHSEQTAINGIATQLEQQLQK 156
           S + +G   + KT++  Y  + +++  KE             E   +     Q     ++
Sbjct: 47  SNLFLGLTGTGKTFVSKYIFNEIEEVKKED-----------EEYKDVK----QAYVNCRE 91

Query: 157 IHGSEEKIDDTSLETISSGSLTEVFEKILLLLDSTTKTRNEDSGEVDRESITKITVVFIF 216
           + G+ + +  +    ++  S+ +    +   +D                    I  +   
Sbjct: 92  VGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNG------------TRNIRAIIYL 139

Query: 217 DEIDTFAGPV-RQTLLYNLFDMVEHSRVPVCIFGCTTKLNILEYLEKRVKSRFSQRVIYM 275
           DE+DT         +LY L      S   + +   +  +N+ +Y+E RV S     VI+ 
Sbjct: 140 DEVDTLVKRRGGDIVLYQLL----RSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFK 195

Query: 276 P 276
           P
Sbjct: 196 P 196


>5FL3-A nrPDB
          Length = 368

 Score = 32.0 bits (71), Expect = 0.59,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 82  IDRIIKQSIIQKESHSVILVGPRQSYKTYLLDYELSLLQQSYKEQFITIRLN-GFIHSEQ 140
           + R + +S+  KE   +++ GP  S K+  L   +  +   Y +  ITI     F+H  +
Sbjct: 120 LPREVMESLAAKERGLILVTGPTGSGKSTTLAALIDHINLHYAKNIITIEDPIEFLHKHK 179

Query: 141 TAINGIATQLEQQLQ 155
                +  Q E  L 
Sbjct: 180 ---KSLVVQREVGLD 191


>6B4O-A nrPDB
          Length = 452

 Score = 31.6 bits (70), Expect = 0.87,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 221 TFAGPVRQTLLYNLFDMVEHSRVPVCIFGCTTKLNILEYLEKRVKSRFSQRVIYMPQIQN 280
            F G     L YNL   V  +  PV   G T K  + EY E +VK     R  + P    
Sbjct: 327 LFNGQTDLYLDYNLVPTVVFTHPPVATIGLTEKAALEEYGEDQVK---IYRSSFTPMYFA 383

Query: 281 LDDMVDAV 288
           L +     
Sbjct: 384 LGEYRQKC 391


>5V6R-A nrPDB
          Length = 587

 Score = 31.2 bits (69), Expect = 0.98,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 64/192 (33%), Gaps = 40/192 (20%)

Query: 258 EYLEKRVKSRFSQRVIYMPQI------------QNLDDMVDAVRNLLTVRSEISPWVSQW 305
           E +E +   R S R   +P+I            Q   D  D  + +L++R +  P   ++
Sbjct: 344 ELVEPKKSHRQSHRKKVLPEIYLTRLLSTKGTLQKFLD--DLFKAILSIREDKPPLAVKY 401

Query: 306 NETLEKELSDPRSNLNRHIRMNFETFRSLPTLKNSIIPLVATSKNFGSLCTAIKSCSFLD 365
                +E ++ R   +      ++T                 S         +K+  F+ 
Sbjct: 402 FFDFLEEQAEKRGISDPDTLHIWKT----------------NSLPLRFWVNILKNPQFVF 445

Query: 366 IYNKNQLSNNLTGRLQSLSDLELAILISAARVALRAKDGSFNFNLAYA----EYEKMIKA 421
              K    +        LS +  A + + +   L+    S    L YA    EY K ++ 
Sbjct: 446 DIEKTDHID------ACLSVIAQAFIDACSISDLQLGKDSPTNKLLYAKEIPEYRKTVQR 499

Query: 422 INSRIPTVAPTT 433
              +I  + P +
Sbjct: 500 YYKQIQDMTPLS 511


>5W0T-A nrPDB
          Length = 304

 Score = 30.9 bits (68), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 7/96 (7%)

Query: 82  IDRIIKQSIIQKESHSVILVGPRQSYKTYLLDYELSLLQQSYKEQFITIRLNGFI---HS 138
           +  +   S + +    V+L GP    KT L       L +     FI+IR++  +   + 
Sbjct: 64  MPEVYSNSPLLQAPSGVLLYGPPGCGKTMLA----KALAKESGANFISIRMSSIMDKWYG 119

Query: 139 EQTAINGIATQLEQQLQKIHGSEEKIDDTSLETISS 174
           E   I      L  +LQ      ++ID    E  S+
Sbjct: 120 ESNKIVDAMFSLANKLQPCIIFIDEIDSFLRERSST 155


>3QGY-A nrPDB
          Length = 286

 Score = 30.5 bits (67), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 103 PRQSYKTYLLDYELSLLQQSYKEQFITIRLNGFIHSEQTAINGI 146
           PR S    +   EL+ +Q+    QF  + L  +++ ++ AI  I
Sbjct: 16  PRGSLHMVIDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTI 59


>1IQP-A nrPDB
          Length = 327

 Score = 30.5 bits (67), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 79  QQEIDRIIKQSIIQKESHSVILVGPRQSYKTYLLDYELSLLQQSYKEQ 126
           Q+ I + +K  +       ++  GP    KT      L+L ++ + E 
Sbjct: 30  QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTT---AALALARELFGEN 74


>6HA8-V nrPDB
          Length = 548

 Score = 30.1 bits (66), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 89  SIIQKESHSVILVGPRQSYKTYLLDYEL 116
           +I   E   V ++GP  S KT LL+  L
Sbjct: 319 TIQHGEK--VAIIGPNGSGKTTLLNIIL 344


>2YBX-A nrPDB
          Length = 394

 Score = 30.1 bits (66), Expect = 2.3,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 72/210 (34%), Gaps = 16/210 (7%)

Query: 275 MPQIQNLDDMVDAVRNLLTVRSEISPWVSQWNETLEKEL-SDPRSNLNRHIRMNFETFRS 333
           MP      +    V   L  R  I     Q + T    L +D ++        +++    
Sbjct: 73  MPSHFKFKEYCPMVFRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYD---- 128

Query: 334 LPTLKNSIIPLVATSKNFGSLCTAIKSCSFLDIYNKNQLSNNLTGRLQ-SLSDLELAILI 392
               K  II  + +           K   ++   +   L     G  + ++  +E+ +++
Sbjct: 129 ----KRYIIKTITSEDVAEMHNILKKYHQYIVECHGITLLPQFLGMYRLNVDGVEIYVIV 184

Query: 393 S---AARVALRAKDGSFNFNLAYAEYEKMIKAINSRIPTVAPTTNVGTGQSTFSIDNTIK 449
           +    +      +      +    E     KA    +PT+     +  GQ  +  DN  K
Sbjct: 185 TRNVFSHRLSVYRKYDLKGSTVAREASDKEKA--KELPTLKDNDFINEGQKIYIDDNNKK 242

Query: 450 LWLKKDVKNVWENLVQLDFFTEKSAVGLRD 479
           ++L+K  K+V E L QL        VG+ D
Sbjct: 243 VFLEKLKKDV-EFLAQLKLMDYSLLVGIHD 271


>3GTD-A nrPDB
          Length = 482

 Score = 30.1 bits (66), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 47/115 (40%)

Query: 71  IFTYLQDCQQEIDRIIKQSIIQKESHSVILVGPRQSYKTYLLDYELSLLQQSYKEQFITI 130
           + TYLQD  ++ D+IIK      +  + + +    S     ++Y L  ++ + K+ ++  
Sbjct: 188 LLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKVYLLA 247

Query: 131 RLNGFIHSEQTAINGIATQLEQQLQKIHGSEEKIDDTSLETISSGSLTEVFEKIL 185
           +    + +   +  G   +  Q++ +      K      E++++      F   L
Sbjct: 248 QGGTAVGTGINSKIGFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTL 302


>5DO7-A nrPDB
          Length = 666

 Score = 30.1 bits (66), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 75  LQDCQQEIDR-IIKQSIIQKESHSVI-LVGPRQSYKTYLLD 113
           +  C+Q+  R I+K   +  ES  ++ ++G   S KT LLD
Sbjct: 57  ITSCRQQWTRQILKDVSLYVESGQIMCILGSSGSGKTTLLD 97


>1SAV-A nrPDB
          Length = 320

 Score = 30.1 bits (66), Expect = 2.6,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 16/156 (10%)

Query: 47  PGFGS-LQRRLLQQLYGTLPTDEKIIFTYL--------QDCQQEIDRIIKQSIIQKESHS 97
           PGF        L++    L TDE+ I T L        Q+       +  + ++      
Sbjct: 13  PGFDERADAETLRKAMKGLGTDEESILTLLTSRSNAQRQEISAAFKTLFGRDLLDDLKSE 72

Query: 98  VILVGPRQSYKTYLLDYELSLLQQSYKEQFITIRLNGFIHSEQTAINGIATQLEQQLQKI 157
           +       + K   L   L    + Y    +   L G   +E+     IA++  ++L+ I
Sbjct: 73  L-------TGKFEKLIVALMKPSRLYDAYELKHALKGAGTNEKVLTEIIASRTPEELRAI 125

Query: 158 HGSEEKIDDTSLETISSGSLTEVFEKILLLLDSTTK 193
               E+   +SLE    G  +  ++++L++L    +
Sbjct: 126 KQVYEEEYGSSLEDDVVGDTSGYYQRMLVVLLQANR 161


>6QUZ-B nrPDB
          Length = 599

 Score = 30.1 bits (66), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 12/102 (11%)

Query: 85  IIKQSIIQ-KESHSVILVGPRQSYKTYLLDYELSLLQQSYKEQFITIRLNGFIHSEQTAI 143
           ++K      K    V LVGP  S KT +++    LL + Y      I ++G        I
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVN----LLMRFYDVDRGQILVDG------IDI 419

Query: 144 NGIATQLEQQLQKIHGSEEKIDDTSL-ETISSGSLTEVFEKI 184
             I     +    I   +  +  T++ E +  G+     E+I
Sbjct: 420 RKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEI 461


>5DGX-A nrPDB
          Length = 256

 Score = 29.7 bits (65), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 11/102 (10%)

Query: 93  KESHSVILVGPRQSYKTYLLDYELSLLQQSYKEQFITIRLNGFIHSEQTAINGIATQLEQ 152
           K   +V  VG   S KT L     S++ + Y +    I L+G + + +  +  + + L  
Sbjct: 42  KAGQTVAFVGKSGSGKTTLT----SIISRFYTQHEGEILLDG-VDTRELTLENLRSHLSI 96

Query: 153 QLQKIHGSEEKIDDTSLETISSGSLTEVFEKILLLLDSTTKT 194
             Q +H      DDT    I+ G   EV E+ +  +D+  + 
Sbjct: 97  VSQNVH----LFDDTVYNNIAFGLSREVSEEEV--IDALKRA 132


>4Q7L-A nrPDB
          Length = 256

 Score = 29.7 bits (65), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 12/102 (11%)

Query: 85  IIKQSIIQ-KESHSVILVGPRQSYKTYLLDYELSLLQQSYKEQFITIRLNGFIHSEQTAI 143
           ++K      K    V LVGP  S KT +++    LL + Y      I ++G        I
Sbjct: 20  VLKDITFHIKPGQKVALVGPTGSGKTTIVN----LLMRFYDVDRGQILVDG------IDI 69

Query: 144 NGIATQLEQQLQKIHGSEEKIDDTSL-ETISSGSLTEVFEKI 184
             I     +    I   +  +  T++ E +  G+     E+I
Sbjct: 70  RKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEI 111


>3PXI-A nrPDB
          Length = 758

 Score = 29.7 bits (65), Expect = 3.0,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 13/138 (9%)

Query: 97  SVILVGPRQSYKTYLLDYELSLLQQSYKEQFITIRLNGFIHSEQTAINGIATQLEQQ--- 153
           S I +GP    KT L    L+      +E  I I ++ ++    T+   +  ++ ++   
Sbjct: 523 SFIFLGPTGVGKTELAR-ALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRRKPYS 581

Query: 154 ---LQKIHGSEEKIDDTSLETISSGSLTEV------FEKILLLLDSTTKTRNEDSGEVDR 204
              L  I  +   + +  L+ +  G LT+       F   +L++ S      +D    + 
Sbjct: 582 VVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGEL 641

Query: 205 ESITKITVVFIFDEIDTF 222
           +   +   +   DEI  F
Sbjct: 642 KRAFRPEFINRIDEIIVF 659


>3PVS-A nrPDB
          Length = 447

 Score = 29.7 bits (65), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 79  QQEI---DRIIKQSIIQKESHSVILVGPRQSYKTYL 111
           QQ +    + + ++I     HS+IL GP  + KT L
Sbjct: 31  QQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTL 66


>5XU1-A nrPDB
          Length = 245

 Score = 29.3 bits (64), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 69  KIIFTYLQDCQQEIDRIIKQSIIQKESHSVILVGPRQSYKTYLLDYELSLLQQSYKEQFI 128
           K IF   ++  QE+  +   ++   E   V ++GP  S K+ L++    L   +  E ++
Sbjct: 20  KNIFRSYRNGDQELQVLKNINLEVNEGEFVAIMGPSGSGKSTLMNTIGMLDTPTSGEYYL 79


>3UPU-A nrPDB
          Length = 459

 Score = 29.3 bits (64), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 62  GTLPTDEKIIFTYLQDCQQEIDRIIKQSIIQKESHSVILVGPRQSYKTYLLDYELSLLQQ 121
           G +P    + F  L + Q+    I+ +  I+++ H V + GP  +  T L  + +  L  
Sbjct: 13  GLVPRGSHMTFDDLTEGQKNAFNIVMK-AIKEKKHHVTINGPAGTGATTLTKFIIEALI- 70

Query: 122 SYKEQFITI 130
           S  E  I +
Sbjct: 71  STGETGIIL 79


>4ZPX-A nrPDB
          Length = 413

 Score = 28.9 bits (63), Expect = 5.7,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 79  QQEIDRIIKQSIIQKESHSVILVGPRQSYKTYLLDYELSLLQQSYKEQFIT 129
           Q+    +IK +  QK    V+L+G   + K+ L      LL     E  + 
Sbjct: 46  QEHAVEVIKTAANQKRH--VLLIGEPGTGKSMLGQAMAELLPTETLEDILV 94


>3K1J-A nrPDB
          Length = 604

 Score = 28.9 bits (63), Expect = 5.7,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 79  QQEIDRIIKQSIIQKESHSVILVGPRQSYKTYLLDYELSLLQQSYKEQFIT 129
           Q+    +IK +  QK    V+L+G   + K+ L      LL     E  + 
Sbjct: 46  QEHAVEVIKTAANQKRH--VLLIGEPGTGKSMLGQAMAELLPTETLEDILV 94


>2QAG-C nrPDB
          Length = 418

 Score = 28.9 bits (63), Expect = 5.7,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 83  DRIIKQSIIQKESHSVILVGPRQSYKTYLLDYEL--SLLQQSYKEQFITIRLNGFIHSEQ 140
           +++ ++S+ +    ++++VG     K+ L++      L    Y      I+    +   +
Sbjct: 19  NQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSK 78

Query: 141 TAINGIATQLEQQLQKIHGSEEKIDDT 167
             I     QL   +    G  + +D++
Sbjct: 79  VLIKEGGVQLLLTIVDTPGFGDAVDNS 105


>3JC8-Ba nrPDB
          Length = 566

 Score = 28.9 bits (63), Expect = 5.8,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 88  QSIIQKESHSVILVGPRQSYKTYLLDYELSLLQ 120
           +  I +    V++ GP  S KT  L   LS L 
Sbjct: 307 KEAIDRPYGMVLVTGPTGSGKTTTLYSALSSLN 339


>3VX4-A nrPDB
          Length = 273

 Score = 28.9 bits (63), Expect = 6.0,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 93  KESHSVILVGPRQSYKTYLLDYELSLLQQSYKEQFITIRLNGFIHS--EQTAINGIATQL 150
           K+   V LVG   S KT L      L+   Y+     +R+NG      ++TA+    + L
Sbjct: 59  KKGSKVSLVGASGSGKTTLA----KLIVNFYEPNKGIVRINGNDLKVIDKTALRRHISYL 114

Query: 151 EQQLQKIHGS 160
            QQ     GS
Sbjct: 115 PQQAYVFSGS 124


>2Q98-A nrPDB
          Length = 191

 Score = 28.9 bits (63), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 1   MTISEARLSPQVNLLPIKRHSNEEVEETAAILKKRTIDNEKC 42
           M   E+RLS   NLL   R  + +++    +LK R I N  C
Sbjct: 150 MADEESRLSAYYNLLHCLRRDSHKIDNYLKLLKCRIIHNNNC 191


>4MKI-B nrPDB
          Length = 298

 Score = 28.6 bits (62), Expect = 6.3,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 54/136 (39%), Gaps = 21/136 (15%)

Query: 100 LVGPRQSYKTYLLDYELSLLQQSYKEQFITIRLNGF-IHSEQTAINGIATQL-------E 151
           ++G   S K+ L+     LL+ S  +    I +NG  I  ++ ++  I  Q+       E
Sbjct: 42  IIGHTGSGKSTLIQQLNGLLKPSKGK----IYINGIDITDKKVSLKDIRKQVGLVFQYPE 97

Query: 152 QQLQKIHGSEEKIDDTSLETISSGSLTEVFEKILLLLDSTTKTRNE-----DSGEVDRES 206
            QL +    ++     S   +S   + E   + + ++  + +  ++       G+  R +
Sbjct: 98  YQLFEETVFKDIAFGPSNLGLSEEEVKERVYEAMEIVGISKELADKSPFELSGGQKRRVA 157

Query: 207 ITKI----TVVFIFDE 218
           I  I      + I DE
Sbjct: 158 IAGILAMRPKILILDE 173


>1HXR-A nrPDB
          Length = 115

 Score = 28.6 bits (62), Expect = 6.8,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query: 268 FSQRVIYMPQIQNLDDMVD 286
           FS+R +++P ++   D+VD
Sbjct: 30  FSRRQLFLPSMRKKPDLVD 48


>2EYU-A nrPDB
          Length = 261

 Score = 28.6 bits (62), Expect = 6.9,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 18/39 (46%)

Query: 92  QKESHSVILVGPRQSYKTYLLDYELSLLQQSYKEQFITI 130
            ++   +++ GP  S K+  +   +  + Q+     ITI
Sbjct: 22  HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 60


>2EWW-A nrPDB
          Length = 372

 Score = 28.6 bits (62), Expect = 7.3,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 18/39 (46%)

Query: 92  QKESHSVILVGPRQSYKTYLLDYELSLLQQSYKEQFITI 130
            ++   +++ GP  S K+  +   +  + Q+     ITI
Sbjct: 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 171


>5Z6Q-A nrPDB
          Length = 392

 Score = 28.6 bits (62), Expect = 7.3,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 89  SIIQKESHSVILVGPRQSYKTYLLDYELSLLQQSY---KEQFITIRLNGFIHSEQTAING 145
           + ++  +  ++L GP  + KT L     +    ++       +T +  G       A+  
Sbjct: 145 TGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFA 204

Query: 146 IATQLEQQL 154
           +A +L+  +
Sbjct: 205 VARELQPSI 213


>5BQ5-A nrPDB
          Length = 189

 Score = 28.6 bits (62), Expect = 7.3,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 79  QQEIDRIIKQSIIQKESHSVILVGPRQSYKTYL-LDYELSLLQQSYKEQFITIR 131
           ++ I  ++  S I ++ + ++ +GP    KT+L +   +  + + YK  FIT  
Sbjct: 24  ERRIRELLTLSFIDRKEN-ILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAH 76


>2WUI-A nrPDB
          Length = 210

 Score = 28.6 bits (62), Expect = 7.3,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 7/84 (8%)

Query: 258 EYLEKRVKSRFSQRVIYMPQIQN-LDDMVDAVRNLLTVRSEISPWVS--QWNETLEKELS 314
           E LEK+   RF  R I     +  L   +D     + ++S          W E L     
Sbjct: 127 ELLEKQ-GQRFGLRQIRRAVERGELPARLDVELASIYLQSLWDGICGTLAWTERLR---D 182

Query: 315 DPRSNLNRHIRMNFETFRSLPTLK 338
           DP +   R  R   ++ RS P L 
Sbjct: 183 DPWNRAERMFRAGLDSLRSSPYLL 206


>3GZD-A nrPDB
          Length = 440

 Score = 28.6 bits (62), Expect = 7.5,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 4/33 (12%)

Query: 255 NILEYLEKRVKSRFSQRVIYM----PQIQNLDD 283
           ++ +YLE+R+++ F Q+ I++    P  Q L +
Sbjct: 320 DVRDYLEERLEAEFGQKRIHLNSQFPGTQRLPN 352


>2OUK-A nrPDB
          Length = 263

 Score = 28.2 bits (61), Expect = 8.4,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 6/75 (8%)

Query: 84  RIIKQSIIQ-KESHSVILVGPRQSYKTYLLDYELSLLQQSYKEQFITIRLNG-FIHSEQT 141
            ++K   +  +E   V+++GP  S K+  L   L+LL + + E  I I  +G  + ++ T
Sbjct: 38  EVLKGINVHIREGEVVVVIGPSGSGKSTFLR-CLNLL-EDFDEGEIII--DGINLKAKDT 93

Query: 142 AINGIATQLEQQLQK 156
            +N +  ++    Q+
Sbjct: 94  NLNKVREEVGMVFQR 108


>1SXJ-D nrPDB
          Length = 353

 Score = 28.2 bits (61), Expect = 9.7,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 13/131 (9%)

Query: 48  GFGSLQRRLLQQL-----YGTLPTDEKIIFTYLQD--CQQEIDRIIKQSIIQKESHSVIL 100
           GFG  ++R + +L         P  EK     L +   Q     ++K+++       ++ 
Sbjct: 4   GFGPNKKRKISKLAAEQSLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLF 63

Query: 101 VGPRQSYKTYLLDYELSLLQQSYKEQFITIRLNGFIHSEQTAINGIATQLEQQLQKIHGS 160
            GP  + KT  +   L+L ++ Y    +  R+     S++  I  I  +  +   ++  S
Sbjct: 64  YGPPGTGKTSTI---LALTKELYGPDLMKSRILELNASDERGI-SIVREKVKNFARLTVS 119

Query: 161 EEKIDDTSLET 171
           +    D  LE 
Sbjct: 120 KPSKHD--LEN 128


>5HAF-A nrPDB
          Length = 338

 Score = 28.2 bits (61), Expect = 10.0,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 240 HSRVPVCIFGCTTKLNIL--EYLEKRVKSRFSQRVIYMPQI 278
               P+ +   TTK NIL  + LEK  +S  S   +++   
Sbjct: 178 SVNYPIGLIHPTTKENILSTQLLEKIAQSGLSHNEVFLVNT 218


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.318    0.128    0.335 

Lambda     K      H
   0.267   0.0392    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,146,166
Number of Sequences: 36641
Number of extensions: 687233
Number of successful extensions: 2403
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 2351
Number of HSP's gapped (non-prelim): 87
length of query: 529
length of database: 10,336,785
effective HSP length: 102
effective length of query: 427
effective length of database: 6,599,403
effective search space: 2817945081
effective search space used: 2817945081
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.2 bits)