BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P54790 (616 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 5ZR1-C nrPDB 1256 0.0 6M7X-A nrPDB 35 0.094 4ZGX-A nrPDB 32 0.91 4ZZA-A nrPDB 31 1.2 5UJ8-A nrPDB 30 2.3 3RPD-A nrPDB 29 7.6 >5ZR1-C nrPDB Length = 616 Score = 1256 bits (3251), Expect = 0.0, Method: Compositional matrix adjust. Identities = 616/616 (100%), Positives = 616/616 (100%) Query: 1 MSDLNQSKKMNVSEFADAQRSHYTVYPSLPQSNKNDKHIPFVKLLSGKESEVNVEKRWEL 60 MSDLNQSKKMNVSEFADAQRSHYTVYPSLPQSNKNDKHIPFVKLLSGKESEVNVEKRWEL Sbjct: 1 MSDLNQSKKMNVSEFADAQRSHYTVYPSLPQSNKNDKHIPFVKLLSGKESEVNVEKRWEL 60 Query: 61 YHQLHSHFHDQVDHIIDNIEADLKAEISDLLYSETTQKRRCFNTIFLLGSDSTTKIELKD 120 YHQLHSHFHDQVDHIIDNIEADLKAEISDLLYSETTQKRRCFNTIFLLGSDSTTKIELKD Sbjct: 61 YHQLHSHFHDQVDHIIDNIEADLKAEISDLLYSETTQKRRCFNTIFLLGSDSTTKIELKD 120 Query: 121 ESSRYNVLIELTPKESPNVRMMLRRSMYKLYSAADAEEHPTIKYEDINDEDGDFTEQNND 180 ESSRYNVLIELTPKESPNVRMMLRRSMYKLYSAADAEEHPTIKYEDINDEDGDFTEQNND Sbjct: 121 ESSRYNVLIELTPKESPNVRMMLRRSMYKLYSAADAEEHPTIKYEDINDEDGDFTEQNND 180 Query: 181 VSYDLSLVENFKRLFGKDLAMVFNFKDVDSINFNTLDNFIILLKSAFKYDHVKISLIFNI 240 VSYDLSLVENFKRLFGKDLAMVFNFKDVDSINFNTLDNFIILLKSAFKYDHVKISLIFNI Sbjct: 181 VSYDLSLVENFKRLFGKDLAMVFNFKDVDSINFNTLDNFIILLKSAFKYDHVKISLIFNI 240 Query: 241 NTNLSNIEKNLRQSTIRLLKRNYHKLDVSSNKGFKYGNQIFQSFLDTVDGKLNLSDRFVE 300 NTNLSNIEKNLRQSTIRLLKRNYHKLDVSSNKGFKYGNQIFQSFLDTVDGKLNLSDRFVE Sbjct: 241 NTNLSNIEKNLRQSTIRLLKRNYHKLDVSSNKGFKYGNQIFQSFLDTVDGKLNLSDRFVE 300 Query: 301 FILSKMANNTNHNLQLLTKMLDYSLMSYFFQNAFSVFIDPVNVDFLNDDYLKILSRCPTF 360 FILSKMANNTNHNLQLLTKMLDYSLMSYFFQNAFSVFIDPVNVDFLNDDYLKILSRCPTF Sbjct: 301 FILSKMANNTNHNLQLLTKMLDYSLMSYFFQNAFSVFIDPVNVDFLNDDYLKILSRCPTF 360 Query: 361 MFFVEGLIKQHAPADEILSLLTNKNRGLEEFFVEFLVRENPINGHAKFVARFLEEELNIT 420 MFFVEGLIKQHAPADEILSLLTNKNRGLEEFFVEFLVRENPINGHAKFVARFLEEELNIT Sbjct: 361 MFFVEGLIKQHAPADEILSLLTNKNRGLEEFFVEFLVRENPINGHAKFVARFLEEELNIT 420 Query: 421 NFNLIELYHNLLIGKLDSYLDRWSACKEYKDRLHFEPIDTIFQELFTLDNRSGLLTQSIF 480 NFNLIELYHNLLIGKLDSYLDRWSACKEYKDRLHFEPIDTIFQELFTLDNRSGLLTQSIF Sbjct: 421 NFNLIELYHNLLIGKLDSYLDRWSACKEYKDRLHFEPIDTIFQELFTLDNRSGLLTQSIF 480 Query: 481 PSYKSNIEDNLLSWEQVLPSLDKENYDTLSGDLDKIMAPVLGQLFKLYREANMTINIYDF 540 PSYKSNIEDNLLSWEQVLPSLDKENYDTLSGDLDKIMAPVLGQLFKLYREANMTINIYDF Sbjct: 481 PSYKSNIEDNLLSWEQVLPSLDKENYDTLSGDLDKIMAPVLGQLFKLYREANMTINIYDF 540 Query: 541 YIAFRETLPKEEILNFIRKDPSNTKLLELAETPDAFDKVALILFMQAIFAFENMGLIKFQ 600 YIAFRETLPKEEILNFIRKDPSNTKLLELAETPDAFDKVALILFMQAIFAFENMGLIKFQ Sbjct: 541 YIAFRETLPKEEILNFIRKDPSNTKLLELAETPDAFDKVALILFMQAIFAFENMGLIKFQ 600 Query: 601 STKSYDLVEKCVWRGI 616 STKSYDLVEKCVWRGI Sbjct: 601 STKSYDLVEKCVWRGI 616 >6M7X-A nrPDB Length = 484 Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 9/98 (9%) Query: 440 LDRWSACKEYKDRLHFEPIDTIFQELFTLDNRSGLLTQSIFPS----YKSNIEDNLLSWE 495 L RW++ K +K+ HFE D IFQ DN + Q + S Y S + + LL+ E Sbjct: 221 LSRWTSPKVWKE--HFEAWDCIFQ---YGDNCIQKIYQELAFSRPQQYTSIVAELLLNAE 275 Query: 496 QVLPSLDKENYDTLSGDLDKIMAPVLGQLFKLYREANM 533 ++ + + +G +D + P+L LF+L R N+ Sbjct: 276 LSPDAIKANSMELTAGSVDTTVFPLLMTLFELARNPNV 313 >4ZGX-A nrPDB Length = 489 Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 9/98 (9%) Query: 440 LDRWSACKEYKDRLHFEPIDTIFQELFTLDNRSGLLTQSIF---PS-YKSNIEDNLLSWE 495 L RW + K +K+ HFE D IFQ DN + Q + P Y + + LL E Sbjct: 221 LSRWISPKVWKE--HFEAWDCIFQ---YGDNCIQKIYQELAFNRPQHYTGIVAELLLKAE 275 Query: 496 QVLPSLDKENYDTLSGDLDKIMAPVLGQLFKLYREANM 533 L ++ + + +G +D P+L LF+L R ++ Sbjct: 276 LSLEAIKANSMELTAGSVDTTAFPLLMTLFELARNPDV 313 >4ZZA-A nrPDB Length = 396 Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 37/94 (39%) Query: 209 DSINFNTLDNFIILLKSAFKYDHVKISLIFNINTNLSNIEKNLRQSTIRLLKRNYHKLDV 268 D I FN +F S +D L+ +N + NI KNL Q++ KR Y Sbjct: 63 DVITFNGDYSFGTFAASGVFHDFTDDPLVSELNEGMVNIAKNLVQTSDPAKKRLYGLPFA 122 Query: 269 SSNKGFKYGNQIFQSFLDTVDGKLNLSDRFVEFI 302 + G+ Y +F+ D D F+ + Sbjct: 123 GNASGYIYNKDLFRKVGLDPDNPPQTWDEFIAML 156 >5UJ8-A nrPDB Length = 712 Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust. Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 13/100 (13%) Query: 517 MAPVLGQLFKLYREANMTINIYDFYIAFRETLPKEEILNFIRKDPSNTKLLELAETPDAF 576 +AP + +KL+ E + IN+ D+ AF + E ++ +N+ T + Sbjct: 626 IAPDICIAYKLHLECSRLINLVDWSEAFATVVTAAEKMD------ANSA------TSEEM 673 Query: 577 DKVALILFMQAIFAFENMGLIKFQSTKSYDLVEKCVWRGI 616 +++ F++A+ E +G IK K+ D V + W G Sbjct: 674 NEIIHARFIRAVSELELLGFIKPTKQKT-DHVARLTWGGC 712 >3RPD-A nrPDB Length = 357 Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust. Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 4/77 (5%) Query: 483 YKSNIEDNLLSWEQVLPSLDKENYDTLSGDLDKIMAPVLGQLFKLYREANMTINIYDFYI 542 +K + +E+V P L K N D +S + P+ +L +L R + + D Sbjct: 237 WKKTLGSEWRQYEEVFPKLQKSNIDIISLECHNSHVPM--ELLELIRGKKVMVGAIDVAT 294 Query: 543 AFRETLPKEEILNFIRK 559 ET EE+ + +RK Sbjct: 295 DTIET--AEEVADTLRK 309 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 5ZR1-C nrPDB 1229 0.0 Sequences not found previously or not previously below threshold: 6M7X-A nrPDB 37 0.025 5UJ8-A nrPDB 36 0.042 4ZGX-A nrPDB 33 0.46 4ZZA-A nrPDB 32 0.61 2FLC-A nrPDB 31 1.2 2R5R-A nrPDB 30 2.4 4OFZ-A nrPDB 30 3.0 6EF3-H nrPDB 29 5.9 5SZN-A nrPDB 29 6.9 5WXL-A nrPDB 28 8.8 5A53-C nrPDB 28 8.8 3JCT-v nrPDB 28 8.8 CONVERGED! >5ZR1-C nrPDB Length = 616 Score = 1229 bits (3181), Expect = 0.0, Method: Composition-based stats. Identities = 616/616 (100%), Positives = 616/616 (100%) Query: 1 MSDLNQSKKMNVSEFADAQRSHYTVYPSLPQSNKNDKHIPFVKLLSGKESEVNVEKRWEL 60 MSDLNQSKKMNVSEFADAQRSHYTVYPSLPQSNKNDKHIPFVKLLSGKESEVNVEKRWEL Sbjct: 1 MSDLNQSKKMNVSEFADAQRSHYTVYPSLPQSNKNDKHIPFVKLLSGKESEVNVEKRWEL 60 Query: 61 YHQLHSHFHDQVDHIIDNIEADLKAEISDLLYSETTQKRRCFNTIFLLGSDSTTKIELKD 120 YHQLHSHFHDQVDHIIDNIEADLKAEISDLLYSETTQKRRCFNTIFLLGSDSTTKIELKD Sbjct: 61 YHQLHSHFHDQVDHIIDNIEADLKAEISDLLYSETTQKRRCFNTIFLLGSDSTTKIELKD 120 Query: 121 ESSRYNVLIELTPKESPNVRMMLRRSMYKLYSAADAEEHPTIKYEDINDEDGDFTEQNND 180 ESSRYNVLIELTPKESPNVRMMLRRSMYKLYSAADAEEHPTIKYEDINDEDGDFTEQNND Sbjct: 121 ESSRYNVLIELTPKESPNVRMMLRRSMYKLYSAADAEEHPTIKYEDINDEDGDFTEQNND 180 Query: 181 VSYDLSLVENFKRLFGKDLAMVFNFKDVDSINFNTLDNFIILLKSAFKYDHVKISLIFNI 240 VSYDLSLVENFKRLFGKDLAMVFNFKDVDSINFNTLDNFIILLKSAFKYDHVKISLIFNI Sbjct: 181 VSYDLSLVENFKRLFGKDLAMVFNFKDVDSINFNTLDNFIILLKSAFKYDHVKISLIFNI 240 Query: 241 NTNLSNIEKNLRQSTIRLLKRNYHKLDVSSNKGFKYGNQIFQSFLDTVDGKLNLSDRFVE 300 NTNLSNIEKNLRQSTIRLLKRNYHKLDVSSNKGFKYGNQIFQSFLDTVDGKLNLSDRFVE Sbjct: 241 NTNLSNIEKNLRQSTIRLLKRNYHKLDVSSNKGFKYGNQIFQSFLDTVDGKLNLSDRFVE 300 Query: 301 FILSKMANNTNHNLQLLTKMLDYSLMSYFFQNAFSVFIDPVNVDFLNDDYLKILSRCPTF 360 FILSKMANNTNHNLQLLTKMLDYSLMSYFFQNAFSVFIDPVNVDFLNDDYLKILSRCPTF Sbjct: 301 FILSKMANNTNHNLQLLTKMLDYSLMSYFFQNAFSVFIDPVNVDFLNDDYLKILSRCPTF 360 Query: 361 MFFVEGLIKQHAPADEILSLLTNKNRGLEEFFVEFLVRENPINGHAKFVARFLEEELNIT 420 MFFVEGLIKQHAPADEILSLLTNKNRGLEEFFVEFLVRENPINGHAKFVARFLEEELNIT Sbjct: 361 MFFVEGLIKQHAPADEILSLLTNKNRGLEEFFVEFLVRENPINGHAKFVARFLEEELNIT 420 Query: 421 NFNLIELYHNLLIGKLDSYLDRWSACKEYKDRLHFEPIDTIFQELFTLDNRSGLLTQSIF 480 NFNLIELYHNLLIGKLDSYLDRWSACKEYKDRLHFEPIDTIFQELFTLDNRSGLLTQSIF Sbjct: 421 NFNLIELYHNLLIGKLDSYLDRWSACKEYKDRLHFEPIDTIFQELFTLDNRSGLLTQSIF 480 Query: 481 PSYKSNIEDNLLSWEQVLPSLDKENYDTLSGDLDKIMAPVLGQLFKLYREANMTINIYDF 540 PSYKSNIEDNLLSWEQVLPSLDKENYDTLSGDLDKIMAPVLGQLFKLYREANMTINIYDF Sbjct: 481 PSYKSNIEDNLLSWEQVLPSLDKENYDTLSGDLDKIMAPVLGQLFKLYREANMTINIYDF 540 Query: 541 YIAFRETLPKEEILNFIRKDPSNTKLLELAETPDAFDKVALILFMQAIFAFENMGLIKFQ 600 YIAFRETLPKEEILNFIRKDPSNTKLLELAETPDAFDKVALILFMQAIFAFENMGLIKFQ Sbjct: 541 YIAFRETLPKEEILNFIRKDPSNTKLLELAETPDAFDKVALILFMQAIFAFENMGLIKFQ 600 Query: 601 STKSYDLVEKCVWRGI 616 STKSYDLVEKCVWRGI Sbjct: 601 STKSYDLVEKCVWRGI 616 >6M7X-A nrPDB Length = 484 Score = 36.9 bits (84), Expect = 0.025, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 9/98 (9%) Query: 440 LDRWSACKEYKDRLHFEPIDTIFQELFTLDNRSGLLTQSIFPS----YKSNIEDNLLSWE 495 L RW++ K +K+ HFE D IFQ DN + Q + S Y S + + LL+ E Sbjct: 221 LSRWTSPKVWKE--HFEAWDCIFQ---YGDNCIQKIYQELAFSRPQQYTSIVAELLLNAE 275 Query: 496 QVLPSLDKENYDTLSGDLDKIMAPVLGQLFKLYREANM 533 ++ + + +G +D + P+L LF+L R N+ Sbjct: 276 LSPDAIKANSMELTAGSVDTTVFPLLMTLFELARNPNV 313 >5UJ8-A nrPDB Length = 712 Score = 36.2 bits (82), Expect = 0.042, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 41/207 (19%) Query: 201 MVFNFKDVDSINFNTLDNFIILLKSAFKYDHVKISLIFNINTNLSNIEKNLRQSTIRLLK 260 +V KD++S L +FII+ S+ + LIF I T+ I + L + LL Sbjct: 215 VVVILKDMESFATKVLQDFIII--SSQHLHEFPLILIFGIATSPIIIHRLLPHAVSSLL- 271 Query: 261 RNYHKLDVSSNKGFKYGNQIFQSF-----LDTVDGKLNLSDRFV----EFILSKMAN--- 308 ++FQS L TV KL L+ +F E +L + N Sbjct: 272 ----------------CIELFQSLSCKEHLTTVLDKLLLTTQFPFKINEKVLQVLTNIFL 315 Query: 309 NTNHNLQLLTKMLDYSLMSYFFQNAFSVFIDPV-----NVDFLNDDYLKILSRCPTFMFF 363 + ++Q K L SL+ +F+ SV + ++FL+++ + + R P+F + Sbjct: 316 YHDFSVQNFIKGLQLSLLEHFYSQPLSVLCCNLPEAKRRINFLSNNQCENIRRLPSFRRY 375 Query: 364 VEGLIKQHAPADEILSLLTNKNRGLEE 390 VE KQ +++ ++LLTN+ EE Sbjct: 376 VE---KQ--ASEKQVALLTNERYLKEE 397 >4ZGX-A nrPDB Length = 489 Score = 32.7 bits (73), Expect = 0.46, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 9/98 (9%) Query: 440 LDRWSACKEYKDRLHFEPIDTIFQELFTLDNRSGLLTQSIF----PSYKSNIEDNLLSWE 495 L RW + K +K+ HFE D IFQ DN + Q + Y + + LL E Sbjct: 221 LSRWISPKVWKE--HFEAWDCIFQ---YGDNCIQKIYQELAFNRPQHYTGIVAELLLKAE 275 Query: 496 QVLPSLDKENYDTLSGDLDKIMAPVLGQLFKLYREANM 533 L ++ + + +G +D P+L LF+L R ++ Sbjct: 276 LSLEAIKANSMELTAGSVDTTAFPLLMTLFELARNPDV 313 >4ZZA-A nrPDB Length = 396 Score = 32.3 bits (72), Expect = 0.61, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 5/131 (3%) Query: 173 DFTEQNNDVSYDLSLVENFKRLFGKDLAMVFNFKDV-DSINFNTLDNFIILLKSAFKYDH 231 +F ++N D+ +++ N + DL F V D I FN +F S +D Sbjct: 30 EFEKENPDIRININNSANAQ----TDLRTRFVKDRVPDVITFNGDYSFGTFAASGVFHDF 85 Query: 232 VKISLIFNINTNLSNIEKNLRQSTIRLLKRNYHKLDVSSNKGFKYGNQIFQSFLDTVDGK 291 L+ +N + NI KNL Q++ KR Y + G+ Y +F+ D Sbjct: 86 TDDPLVSELNEGMVNIAKNLVQTSDPAKKRLYGLPFAGNASGYIYNKDLFRKVGLDPDNP 145 Query: 292 LNLSDRFVEFI 302 D F+ + Sbjct: 146 PQTWDEFIAML 156 >2FLC-A nrPDB Length = 247 Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%) Query: 36 DKHIPFVKLLSGKESEVNVEKRWELYHQLHSHFHDQVDHIIDNIEADLKAEISDLLYSET 95 D H VKL+S K ++K W ++Q F D + I+ + +L +S T Sbjct: 76 DIHNIQVKLVSNKRGFNQIDKHWLAHYQEMWKFDDNLLRILRHFTGELPP-----YHSNT 130 Query: 96 TQKRRCFNTIF 106 KRR F T F Sbjct: 131 KDKRRMFMTEF 141 >2R5R-A nrPDB Length = 271 Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%) Query: 21 SHYTVYPSLPQSNKNDKHIPFVKLLSGKESEVNVEKRWELYHQLHSHFHDQVDHI 75 + + +Y +LP + K FV++L+ E E++VE E+ + S HI Sbjct: 52 AQFNMYVNLPHNFKGTHMSRFVEILNSHEREISVESFEEILRSMVSRLESDSGHI 106 >4OFZ-A nrPDB Length = 514 Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 8/68 (11%) Query: 208 VDSINFNTLDNFIILLKSAFKYDHVKISLIFNINTNLSNIEKNLRQSTIRLLKRNYHKLD 267 +D+ N T+D+F L+ +K + +++F + EK+L + + +LKR Y KL Sbjct: 79 IDNDNVQTVDDFKNLM---YKMQETRRAIVFALLN-----EKDLTKDDVEILKRAYEKLT 130 Query: 268 VSSNKGFK 275 + F+ Sbjct: 131 DNQTHSFQ 138 >6EF3-H nrPDB Length = 467 Score = 29.2 bits (64), Expect = 5.9, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 12/47 (25%) Query: 121 ESSRYNVLIELTPKESPNVRMMLRRSMYKLYSAADAEEHPTIKYEDI 167 + S+YN+ + L P+ P+V MM EE P + Y D+ Sbjct: 177 DRSKYNIELPLPPRIDPSVTMM------------TVEEKPDVTYSDV 211 >5SZN-A nrPDB Length = 537 Score = 28.8 bits (63), Expect = 6.9, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 19/81 (23%) Query: 113 TTKIELKDESSRYNVLIELTPKESPNVRMMLRRSMYKLYSAADAEEHPTIKYEDINDEDG 172 T +I ++++S YN+ + T + +P++ E H T+ DIND Sbjct: 378 TAQILDREKASEYNITVTATDRGTPSM---------------STEVHITLYVADINDNPP 422 Query: 173 DFTEQNNDVSYDLSLVENFKR 193 F++ SY + L EN R Sbjct: 423 AFSQ----TSYSVYLPENNPR 439 >5WXL-A nrPDB Length = 271 Score = 28.5 bits (62), Expect = 8.8, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 17/104 (16%) Query: 125 YNVLIELTPKESPNVRMMLRRSMYKLYSAADAEEHPTIKYEDINDEDGDFTEQNNDVSYD 184 ++++++L+ + P+++ R++ + HP +ED++ + F + ND S Sbjct: 26 HDIMVDLSALKKPDMKRFNRKN----------DIHP---FEDMSPLE--FFSEKNDCSLM 70 Query: 185 LSLVENFKRLFGKDLAMVFNFKDVDSINFNTLDNFIILLKSAFK 228 + + + KR F +K D I DNF +L S FK Sbjct: 71 VLMTSSKKRKNNMTFIRTFGYKIYDMIELMVADNFKLL--SDFK 112 >5A53-C nrPDB Length = 230 Score = 28.5 bits (62), Expect = 8.8, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 17/104 (16%) Query: 125 YNVLIELTPKESPNVRMMLRRSMYKLYSAADAEEHPTIKYEDINDEDGDFTEQNNDVSYD 184 ++++++L+ + P+++ R++ + HP +ED++ + F + ND S Sbjct: 21 HDIMVDLSALKKPDMKRFNRKN----------DIHP---FEDMSPLE--FFSEKNDCSLM 65 Query: 185 LSLVENFKRLFGKDLAMVFNFKDVDSINFNTLDNFIILLKSAFK 228 + + + KR F +K D I DNF +L S FK Sbjct: 66 VLMTSSKKRKNNMTFIRTFGYKIYDMIELMVADNFKLL--SDFK 107 >3JCT-v nrPDB Length = 344 Score = 28.5 bits (62), Expect = 8.8, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 17/104 (16%) Query: 125 YNVLIELTPKESPNVRMMLRRSMYKLYSAADAEEHPTIKYEDINDEDGDFTEQNNDVSYD 184 ++++++L+ + P+++ R++ + HP +ED++ + F + ND S Sbjct: 43 HDIMVDLSALKKPDMKRFNRKN----------DIHP---FEDMSPLE--FFSEKNDCSLM 87 Query: 185 LSLVENFKRLFGKDLAMVFNFKDVDSINFNTLDNFIILLKSAFK 228 + + + KR F +K D I DNF +L S FK Sbjct: 88 VLMTSSKKRKNNMTFIRTFGYKIYDMIELMVADNFKLL--SDFK 129 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.321 0.137 0.393 Lambda K H 0.267 0.0452 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,156,054 Number of Sequences: 36641 Number of extensions: 1358097 Number of successful extensions: 3285 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 32 Number of HSP's that attempted gapping in prelim test: 3271 Number of HSP's gapped (non-prelim): 47 length of query: 616 length of database: 10,336,785 effective HSP length: 103 effective length of query: 513 effective length of database: 6,562,762 effective search space: 3366696906 effective search space used: 3366696906 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 62 (28.3 bits)