BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P53860 (351 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 4M8Z-A nrPDB 718 0.0 3B7N-A nrPDB 67 2e-11 1AUA-A nrPDB 65 5e-11 4TLG-A nrPDB 35 0.051 1O6U-A nrPDB 34 0.079 4UYB-A nrPDB 33 0.17 3GYG-A nrPDB 31 0.82 4CJ6-A nrPDB 30 2.3 2YK0-A nrPDB 28 8.0 6GB2-BC nrPDB 27 9.8 >4M8Z-A nrPDB Length = 351 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/351 (100%), Positives = 351/351 (100%) Query: 1 MFKRFSKKKEAPEDPKNLINIDKPIKELPASIAIPKEKPLTGEQQKMYDEVLKHFSNPDL 60 MFKRFSKKKEAPEDPKNLINIDKPIKELPASIAIPKEKPLTGEQQKMYDEVLKHFSNPDL Sbjct: 1 MFKRFSKKKEAPEDPKNLINIDKPIKELPASIAIPKEKPLTGEQQKMYDEVLKHFSNPDL 60 Query: 61 KVYTSEKNKSEDDLKPLEEEEKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGI 120 KVYTSEKNKSEDDLKPLEEEEKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGI Sbjct: 61 KVYTSEKNKSEDDLKPLEEEEKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGI 120 Query: 121 SHLGEEHGDKITADLVAVENESGKQVILGYENDARPILYLKPGRQNTKTSHRQVQHLVFM 180 SHLGEEHGDKITADLVAVENESGKQVILGYENDARPILYLKPGRQNTKTSHRQVQHLVFM Sbjct: 121 SHLGEEHGDKITADLVAVENESGKQVILGYENDARPILYLKPGRQNTKTSHRQVQHLVFM 180 Query: 181 LERVIDFMPAGQDSLALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKA 240 LERVIDFMPAGQDSLALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKA Sbjct: 181 LERVIDFMPAGQDSLALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKA 240 Query: 241 LLTNIPWLAWTFLKLIHPFIDPLTREKLVFDEPFVKYVPKNELDSLYGGDLKFKYNHDVY 300 LLTNIPWLAWTFLKLIHPFIDPLTREKLVFDEPFVKYVPKNELDSLYGGDLKFKYNHDVY Sbjct: 241 LLTNIPWLAWTFLKLIHPFIDPLTREKLVFDEPFVKYVPKNELDSLYGGDLKFKYNHDVY 300 Query: 301 WPALVETAREKRDHYFKRFQSFGGIVGLSEVDLRGTHEKLLYPVKSESSTV 351 WPALVETAREKRDHYFKRFQSFGGIVGLSEVDLRGTHEKLLYPVKSESSTV Sbjct: 301 WPALVETAREKRDHYFKRFQSFGGIVGLSEVDLRGTHEKLLYPVKSESSTV 351 >3B7N-A nrPDB Length = 320 Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 105/232 (45%), Gaps = 23/232 (9%) Query: 77 LEEEEKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLV 136 LE+ K L LR+LRA K+ + ++ T WR E+G + + E++ + A+ Sbjct: 51 LEKNYKERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAE-- 108 Query: 137 AVENESGK------QVILGYENDARPILYLKPGRQNTK------TSHRQVQHLVFMLERV 184 + E K Q + D RP+ + + G N K T + +++LV E Sbjct: 109 --DKERIKLAKMYPQYYHHVDKDGRPLYFEELGGINLKKMYKITTEKQMLRNLVKEYELF 166 Query: 185 IDF-MPAGQDSLALLIDFK-DYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALL 242 + +PA LI+ D+ + ++ + K+V I Q +YPER+GK + Sbjct: 167 ATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYI 226 Query: 243 TNIPWLAWTFLKLIHPFIDPLTREKLV-----FDEPFVKYVPKNELDSLYGG 289 + P+ T K++ PF+DP+T K+ + + +K +P L YGG Sbjct: 227 IHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKYGG 278 >1AUA-A nrPDB Length = 296 Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 19/219 (8%) Query: 85 LTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEE-HGDKITADLVAVENESG 143 L LR+LRA K+ ++ + WR+++G + ++ H D+ L+A + Sbjct: 50 LDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDE--KPLIA---KFY 104 Query: 144 KQVILGYENDARPILYLKPGRQN------TKTSHRQVQHLVFMLERVIDF-MPAGQDSLA 196 Q + D RP+ + + G N + R +++LV+ E V+ + +PA + Sbjct: 105 PQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAG 164 Query: 197 LLIDFK-DYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKL 255 L++ D+ + +S + +E +I Q +YPER+GK + N P+ T +L Sbjct: 165 HLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRL 224 Query: 256 IHPFIDPLTREKLV-----FDEPFVKYVPKNELDSLYGG 289 PF+DP+T K+ + + +K +P L +GG Sbjct: 225 FKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGG 263 >4TLG-A nrPDB Length = 404 Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 5/80 (6%) Query: 217 PPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLV-----FD 271 P + V ++ IL+ +YPE L ++ P L L+ F+ TR K+V + Sbjct: 167 PAVEVYQQFFSILEANYPETLKNLIVIRAPKLFPVAFNLVKSFMSEETRRKIVILGDNWK 226 Query: 272 EPFVKYVPKNELDSLYGGDL 291 + K++ ++L +GG + Sbjct: 227 QELTKFISPDQLPVEFGGTM 246 >1O6U-A nrPDB Length = 403 Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust. Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%) Query: 217 PPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLV-----FD 271 P + E L + + +YPE L + + P L LI PF+ TR+K++ + Sbjct: 166 PAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWK 225 Query: 272 EPFVKYVPKNELDSLYGGDL 291 E +K++ +++ YGG + Sbjct: 226 EVLLKHISPDQVPVEYGGTM 245 >4UYB-A nrPDB Length = 401 Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%) Query: 217 PPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLV-----FD 271 P + V +E +L+ +YPE L L+ L L+ PF+ TR K++ + Sbjct: 167 PLVEVYQEFFGLLEENYPETLKFMLIVKATKLFPVGYNLMKPFLSEDTRRKIIVLGNNWK 226 Query: 272 EPFVKYVPKNELDSLYGGDL 291 E +K + EL + +GG L Sbjct: 227 EGLLKLISPEELPAQFGGTL 246 >3GYG-A nrPDB Length = 289 Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 26/45 (57%) Query: 5 FSKKKEAPEDPKNLINIDKPIKELPASIAIPKEKPLTGEQQKMYD 49 + ++++ D KNL+ I+K +E S+ I + PL G+ + YD Sbjct: 158 YYQEQDEINDKKNLLAIEKICEEYGVSVNINRCNPLAGDPEDSYD 202 >4CJ6-A nrPDB Length = 317 Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust. Identities = 37/209 (17%), Positives = 88/209 (42%), Gaps = 18/209 (8%) Query: 90 FLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILG 149 FLR++RA K+ + + + + +R ++ E D ++ + V E+G +L Sbjct: 96 FLRFIRARKFNVGRAYELLRGYVNFRLQY------PELFDSLSPEAVRCTIEAGYPGVLS 149 Query: 150 YENDARPILYL---KPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPD 206 + ++ L + + T +Q F+LE++++ + ++ +FK + Sbjct: 150 SRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGF-- 207 Query: 207 VPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTRE 266 + + + + ++++ +LQ +P + PW T ++ PF+ E Sbjct: 208 TMQQAASLRTSDL---RKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLE 264 Query: 267 KLVFD----EPFVKYVPKNELDSLYGGDL 291 ++ F + + +N L S +GG L Sbjct: 265 RVFVHGDDLSGFYQEIDENILPSDFGGTL 293 >2YK0-A nrPDB Length = 790 Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 12/84 (14%) Query: 13 EDPKNLINIDKPIKELPASIAIPKEKPLTGEQQKMYDEVLKHFSNPDLKVYTSE-KNKSE 71 +D KN I+ +KPIK S K PL G +N + ++ S KNK E Sbjct: 449 KDEKNKIDFNKPIKTFSIS-EYCKTCPLYGVT----------CTNRGICIHNSNNKNKGE 497 Query: 72 DDLKPLEEEEKAWLTRECFLRYLR 95 +DL + ++K+ T + + YLR Sbjct: 498 NDLNKINIKDKSPTTFDVDMIYLR 521 >6GB2-BC nrPDB Length = 657 Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 12/73 (16%) Query: 16 KNLINIDKPIKELPASIAIPKEKPLTGEQQKMYDEVLKHFSNP------DLKVYTSEKNK 69 +N ID+ +P I ++ P GE E+L+ S P D + Y E+ K Sbjct: 332 ENGKTIDEAYPSMPVGITGWRDLPSAGE------EILEVESEPRAREVVDWRKYEQEQEK 385 Query: 70 SEDDLKPLEEEEK 82 ++DLK +EE+ K Sbjct: 386 GQEDLKIIEEKRK 398 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 4M8Z-A nrPDB 621 e-178 3B7N-A nrPDB 312 2e-85 1AUA-A nrPDB 300 9e-82 Sequences not found previously or not previously below threshold: 4TLG-A nrPDB 91 1e-18 1O6U-A nrPDB 88 4e-18 4UYB-A nrPDB 87 1e-17 1OIP-A nrPDB 71 8e-13 4CJ6-A nrPDB 66 2e-11 3W67-A nrPDB 66 2e-11 6GB2-BC nrPDB 34 0.15 4DPM-A nrPDB 32 0.59 3GYG-A nrPDB 31 0.68 3IZY-P nrPDB 30 1.1 5U50-A nrPDB 29 2.9 4HKA-A nrPDB 29 2.9 2FAU-A nrPDB 29 3.8 6R3V-A nrPDB 28 4.0 6B9O-A nrPDB 28 5.6 3NF1-A nrPDB 28 7.1 >4M8Z-A nrPDB Length = 351 Score = 621 bits (1602), Expect = e-178, Method: Composition-based stats. Identities = 351/351 (100%), Positives = 351/351 (100%) Query: 1 MFKRFSKKKEAPEDPKNLINIDKPIKELPASIAIPKEKPLTGEQQKMYDEVLKHFSNPDL 60 MFKRFSKKKEAPEDPKNLINIDKPIKELPASIAIPKEKPLTGEQQKMYDEVLKHFSNPDL Sbjct: 1 MFKRFSKKKEAPEDPKNLINIDKPIKELPASIAIPKEKPLTGEQQKMYDEVLKHFSNPDL 60 Query: 61 KVYTSEKNKSEDDLKPLEEEEKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGI 120 KVYTSEKNKSEDDLKPLEEEEKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGI Sbjct: 61 KVYTSEKNKSEDDLKPLEEEEKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGI 120 Query: 121 SHLGEEHGDKITADLVAVENESGKQVILGYENDARPILYLKPGRQNTKTSHRQVQHLVFM 180 SHLGEEHGDKITADLVAVENESGKQVILGYENDARPILYLKPGRQNTKTSHRQVQHLVFM Sbjct: 121 SHLGEEHGDKITADLVAVENESGKQVILGYENDARPILYLKPGRQNTKTSHRQVQHLVFM 180 Query: 181 LERVIDFMPAGQDSLALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKA 240 LERVIDFMPAGQDSLALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKA Sbjct: 181 LERVIDFMPAGQDSLALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKA 240 Query: 241 LLTNIPWLAWTFLKLIHPFIDPLTREKLVFDEPFVKYVPKNELDSLYGGDLKFKYNHDVY 300 LLTNIPWLAWTFLKLIHPFIDPLTREKLVFDEPFVKYVPKNELDSLYGGDLKFKYNHDVY Sbjct: 241 LLTNIPWLAWTFLKLIHPFIDPLTREKLVFDEPFVKYVPKNELDSLYGGDLKFKYNHDVY 300 Query: 301 WPALVETAREKRDHYFKRFQSFGGIVGLSEVDLRGTHEKLLYPVKSESSTV 351 WPALVETAREKRDHYFKRFQSFGGIVGLSEVDLRGTHEKLLYPVKSESSTV Sbjct: 301 WPALVETAREKRDHYFKRFQSFGGIVGLSEVDLRGTHEKLLYPVKSESSTV 351 >3B7N-A nrPDB Length = 320 Score = 312 bits (799), Expect = 2e-85, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 112/251 (44%), Gaps = 15/251 (5%) Query: 77 LEEEEKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLV 136 LE+ K L LR+LRA K+ + ++ T WR E+G + + E++ + A+ Sbjct: 51 LEKNYKERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDK 110 Query: 137 AVEN--ESGKQVILGYENDARPILYLKPGRQNTK------TSHRQVQHLVFMLERVIDF- 187 + Q + D RP+ + + G N K T + +++LV E + Sbjct: 111 ERIKLAKMYPQYYHHVDKDGRPLYFEELGGINLKKMYKITTEKQMLRNLVKEYELFATYR 170 Query: 188 MPAGQDSLALLIDFK-DYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIP 246 +PA LI+ D+ + ++ + K+V I Q +YPER+GK + + P Sbjct: 171 VPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSP 230 Query: 247 WLAWTFLKLIHPFIDPLTREKLV-----FDEPFVKYVPKNELDSLYGGDLKFKYNHDVYW 301 + T K++ PF+DP+T K+ + + +K +P L YGG +D ++ Sbjct: 231 FGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKYGGTSVLHNPNDKFY 290 Query: 302 PALVETAREKR 312 + + R+ R Sbjct: 291 YSDIGPWRDPR 301 >1AUA-A nrPDB Length = 296 Score = 300 bits (767), Expect = 9e-82, Method: Composition-based stats. Identities = 59/241 (24%), Positives = 112/241 (46%), Gaps = 21/241 (8%) Query: 65 SEKNKSEDDLKPLEEE--EKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISH 122 S + K+ +L+ L E+ L LR+LRA K+ ++ + WR+++G Sbjct: 28 SAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDT 87 Query: 123 LGEE-HGDKITADLVAVENESGKQVILGYENDARPILYLKPGRQN------TKTSHRQVQ 175 + ++ H D+ L+A + Q + D RP+ + + G N + R ++ Sbjct: 88 ILQDFHYDE--KPLIA---KFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLK 142 Query: 176 HLVFMLERVIDF-MPAGQDSLALLIDFK-DYPDVPKVPGNSKIPPIGVGKEVLHILQTHY 233 +LV+ E V+ + +PA + L++ D+ + +S + +E +I Q +Y Sbjct: 143 NLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYY 202 Query: 234 PERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLV-----FDEPFVKYVPKNELDSLYG 288 PER+GK + N P+ T +L PF+DP+T K+ + + +K +P L +G Sbjct: 203 PERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFG 262 Query: 289 G 289 G Sbjct: 263 G 263 >4TLG-A nrPDB Length = 404 Score = 90.5 bits (223), Expect = 1e-18, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 93/246 (37%), Gaps = 34/246 (13%) Query: 73 DLKPLEEEEKAWL--------------TRECFLRYLRATKWVLKDCIDRITMTLAWRREF 118 DL P ++E A LR+LRA + L+ D + + +R++ Sbjct: 8 DLSPQQQEALARFRENLQDLLPILPNADDYFLLRWLRARNFDLQKSEDMLRRHMEFRKQQ 67 Query: 119 GISHLGEEHGDKITADLVAVENESGKQVILGYENDARPILYLKPGRQNTK------TSHR 172 + ++ V +SG + GY+ + P+ + G + K + Sbjct: 68 DLDNIV-----TWQPPEVIQLYDSGG--LCGYDYEGCPVYFNIIGSLDPKGLLLSASKQD 120 Query: 173 QVQHLVFMLERVIDFMPAGQDSLALLIDFK-DYPDVPKVPGNSKI-PPIGVGKEVLHILQ 230 ++ + + E ++ L I+ D+ + P + V ++ IL+ Sbjct: 121 MIRKRIKVCELLLHECELQTQKLGRKIEMALMVFDMEGLSLKHLWKPAVEVYQQFFSILE 180 Query: 231 THYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLV-----FDEPFVKYVPKNELDS 285 +YPE L ++ P L L+ F+ TR K+V + + K++ ++L Sbjct: 181 ANYPETLKNLIVIRAPKLFPVAFNLVKSFMSEETRRKIVILGDNWKQELTKFISPDQLPV 240 Query: 286 LYGGDL 291 +GG + Sbjct: 241 EFGGTM 246 >1O6U-A nrPDB Length = 403 Score = 88.2 bits (217), Expect = 4e-18, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 83/223 (37%), Gaps = 28/223 (12%) Query: 86 TRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQ 145 LR+LRA + L+ + + +R++ I ++ E +Q Sbjct: 34 DDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS-----------WQPPEVIQQ 82 Query: 146 VILG----YENDARPILYLKPGRQNTK------TSHRQVQHLVFMLERVIDFMPAGQDSL 195 + G Y+ D P+ Y G + K + ++ + E ++ L Sbjct: 83 YLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKL 142 Query: 196 ALLIDFKDYP-DVPKVPGNSKI-PPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFL 253 ++ D + P + E L + + +YPE L + + P L Sbjct: 143 GRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAY 202 Query: 254 KLIHPFIDPLTREKLV-----FDEPFVKYVPKNELDSLYGGDL 291 LI PF+ TR+K++ + E +K++ +++ YGG + Sbjct: 203 NLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGTM 245 >4UYB-A nrPDB Length = 401 Score = 87.0 bits (214), Expect = 1e-17, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 84/219 (38%), Gaps = 20/219 (9%) Query: 86 TRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQ 145 LR+LRA + L+ + + +R+ I H+ + + V + Sbjct: 35 DDYFLLRWLRARNFDLQKSEALLRKYMEFRKTMDIDHILDWQPPE-------VIQKYMPG 87 Query: 146 VILGYENDARPILYLKPGRQNTK------TSHRQVQHLVFMLERVIDFMPAGQDSLALLI 199 + GY+ D P+ Y G + K T ++ + ER++ + L I Sbjct: 88 GLCGYDRDGCPVWYDIIGPLDPKGLLFSVTKQDLLKTKMRDCERILHECDLQTERLGKKI 147 Query: 200 DF-KDYPDVPKVPGNSKIPPI-GVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIH 257 + D + P+ V +E +L+ +YPE L L+ L L+ Sbjct: 148 ETIVMIFDCEGLGLKHFWKPLVEVYQEFFGLLEENYPETLKFMLIVKATKLFPVGYNLMK 207 Query: 258 PFIDPLTREKLV-----FDEPFVKYVPKNELDSLYGGDL 291 PF+ TR K++ + E +K + EL + +GG L Sbjct: 208 PFLSEDTRRKIIVLGNNWKEGLLKLISPEELPAQFGGTL 246 >1OIP-A nrPDB Length = 278 Score = 70.9 bits (172), Expect = 8e-13, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 78/214 (36%), Gaps = 20/214 (9%) Query: 85 LTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGK 144 LT LR+LRA + L + WR E E D ++ + Sbjct: 47 LTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAE-----CPEISADLHPRSIIGLLKAGYH 101 Query: 145 QVILGYENDARPILYLKPGRQNTK--TSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFK 202 V+ + +L + + K T++ + + E ++ + ++ + K Sbjct: 102 GVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGI------K 155 Query: 203 DYPDVPKVPGNSKIPPI-GVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFID 261 D+ + V K++ +L +P ++ L N P + +I PF+ Sbjct: 156 AIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLT 215 Query: 262 PLTREKLV-----FDEPFVKYVPKNELDSLYGGD 290 +E++ + + +++ P + L YGG+ Sbjct: 216 EKIKERIHMHGNNYKQSLLQHFP-DILPLEYGGE 248 >4CJ6-A nrPDB Length = 317 Score = 66.2 bits (160), Expect = 2e-11, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 108/283 (38%), Gaps = 31/283 (10%) Query: 24 PIKELPASIAIPKEKPLTGEQQKMYDEVLKHFSNPDLKVYTSEKNKSEDDLKPLEEEEKA 83 P +LP + K K E+++ +E ++ +L+ + S ++L E Sbjct: 36 PCSQLPRH-TLQKAKDELNEREETREEAVR-----ELQEMVQAQAASGEELAVAVAERVQ 89 Query: 84 WLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENES- 142 FLR++RA K+ + + + + +R ++ E D ++ + V E+ Sbjct: 90 EKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQY------PELFDSLSPEAVRCTIEAG 143 Query: 143 GKQVILGYENDARPILYLKPGRQNTKTSH----RQVQHLVFMLERVIDFMPAGQDSLALL 198 V+ + R ++ +N ++ +Q F+LE++++ + + Sbjct: 144 YPGVLSSRDKYGRVVMLFNI--ENWQSQEITFDEILQAYCFILEKLLE------NEETQI 195 Query: 199 IDFKDYPDVPKVPGNSKIPP-IGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIH 257 F + ++++ +LQ +P + PW T ++ Sbjct: 196 NGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVK 255 Query: 258 PFIDPLTREKLVFDEP----FVKYVPKNELDSLYGGDLKFKYN 296 PF+ E++ F + + +N L S +GG L KY+ Sbjct: 256 PFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGGTLP-KYD 297 >3W67-A nrPDB Length = 266 Score = 65.9 bits (159), Expect = 2e-11, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 77/213 (36%), Gaps = 20/213 (9%) Query: 85 LTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGK 144 LT LR+LRA + L + WR E E D ++ + Sbjct: 35 LTDAFLLRFLRARDFDLDLAWRLMKNYYKWRAE-----CPELSADLRPRSILGLLKAGYH 89 Query: 145 QVILGYENDARPILYLKPGRQNTK--TSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFK 202 V+ ++ +L + + K T++ + + E ++ + ++ + K Sbjct: 90 GVLRSRDSTGSRVLIYRIAYWDPKVFTAYDVFRVSLITSELIVQEVETQRNGV------K 143 Query: 203 DYPDVPKVPGNSKIPPI-GVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFID 261 D+ + V K++ +L +P ++ L N P + +I PF+ Sbjct: 144 AIFDLEGWQVSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLT 203 Query: 262 PLTREKLV-----FDEPFVKYVPKNELDSLYGG 289 ++++ + +++ P + L YGG Sbjct: 204 EKIKDRIHLHGNNYKSSMLQHFP-DILPREYGG 235 >6GB2-BC nrPDB Length = 657 Score = 33.5 bits (75), Expect = 0.15, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 12/74 (16%) Query: 16 KNLINIDKPIKELPASIAIPKEKPLTGEQQKMYDEVLKHFSNP------DLKVYTSEKNK 69 +N ID+ +P I ++ P GE E+L+ S P D + Y E+ K Sbjct: 332 ENGKTIDEAYPSMPVGITGWRDLPSAGE------EILEVESEPRAREVVDWRKYEQEQEK 385 Query: 70 SEDDLKPLEEEEKA 83 ++DLK +EE+ K Sbjct: 386 GQEDLKIIEEKRKE 399 >4DPM-A nrPDB Length = 359 Score = 31.6 bits (70), Expect = 0.59, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 32/82 (39%) Query: 3 KRFSKKKEAPEDPKNLINIDKPIKELPASIAIPKEKPLTGEQQKMYDEVLKHFSNPDLKV 62 K + + P DPK + ++D LP A P E+ E + H +PD+ + Sbjct: 62 KEIADMEIKPTDPKLMDDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPL 121 Query: 63 YTSEKNKSEDDLKPLEEEEKAW 84 E N L + + + W Sbjct: 122 LVPELNPHTISLIDEQRKRREW 143 >3GYG-A nrPDB Length = 289 Score = 31.2 bits (69), Expect = 0.68, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 26/45 (57%) Query: 5 FSKKKEAPEDPKNLINIDKPIKELPASIAIPKEKPLTGEQQKMYD 49 + ++++ D KNL+ I+K +E S+ I + PL G+ + YD Sbjct: 158 YYQEQDEINDKKNLLAIEKICEEYGVSVNINRCNPLAGDPEDSYD 202 >3IZY-P nrPDB Length = 537 Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 12/69 (17%) Query: 21 IDKPIKELPASIAIPKEKPLTGEQQKMYDEVLKHFSNP------DLKVYTSEKNKSEDDL 74 +++ +P I ++ P G DE+L+ S P D + Y E+ K+++DL Sbjct: 231 VNEAYPSMPVGIIGWRDLPSAG------DEILEVESEPRAREVVDWRKYEQEQEKNKEDL 284 Query: 75 KPLEEEEKA 83 K +EE+ K Sbjct: 285 KLIEEKRKE 293 >5U50-A nrPDB Length = 265 Score = 29.3 bits (64), Expect = 2.9, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 18/104 (17%) Query: 107 RITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILGYENDARPILYLKPGRQ- 165 + W +G S L E + + E E ++D+ P +L+ G Sbjct: 162 MFEASKEWSETYGGSSLLETLYKALDEVVKLPECEI---YSYNPDSDSDP--FLEKGAIW 216 Query: 166 --NTKTSHRQVQHLVFMLERVIDFMPAGQDSL---ALLIDFKDY 204 N +R+++ RV+ F + +L L++ Y Sbjct: 217 SFNFFFYNRKLK-------RVVSFRFSCLSNLVAEGFLVNDSTY 253 >4HKA-A nrPDB Length = 366 Score = 29.3 bits (64), Expect = 2.9, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 56/149 (37%), Gaps = 10/149 (6%) Query: 128 GDKITADLVAVENESGKQVILGYENDARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDF 187 G KI + + ++ Q +L E D RP+ + + ++F + + D Sbjct: 2 GGKIYGEYLMLDKLLDAQCML-SEEDKRPVHDEHLFIITHQAYELWFKQIIFEFDSIRDM 60 Query: 188 MPAGQDSLALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKA--LLTNI 245 + A ++ + K V + N + + + + + IL+T P L Sbjct: 61 LDA-----EVIDETKTLEIVKR--LNRVVLILKLLVDQVPILETMTPLDFMDFRKYLAPA 113 Query: 246 PWLAWTFLKLIHPFIDPLTREKLVFDEPF 274 +LI + LT +++ +++ + Sbjct: 114 SGFQSLQFRLIENKLGVLTEQRVRYNQKY 142 >2FAU-A nrPDB Length = 341 Score = 28.9 bits (63), Expect = 3.8, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 61/183 (33%), Gaps = 38/183 (20%) Query: 172 RQVQHLVFMLERVIDFM---PAGQDSLALLIDFKDYPDVPKVPGNSKIPPIGVG------ 222 R++ LV + ++ + P +S+ + + +D + SK V Sbjct: 140 RRLTDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYF 199 Query: 223 ----------------KEVLHI--LQTHYPERLGKALLTN-IPW-LAWTFLKLIHPFIDP 262 KE+ I T E + K + + P ++L DP Sbjct: 200 LLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDP 259 Query: 263 L----TREKLVFDEPFVKYVPKNELDSLYGGDLKFKYNHDVYWPALVETAREKRDHYFKR 318 K F+ V +E D Y FK + W E R++R ++ +R Sbjct: 260 TPTMRDVNKKFSVRYFLNLVLVDEEDRRY-----FKQQEIILWRKAPEKLRKQRTNFHQR 314 Query: 319 FQS 321 F+S Sbjct: 315 FES 317 >6R3V-A nrPDB Length = 439 Score = 28.5 bits (62), Expect = 4.0, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 3/74 (4%) Query: 213 NSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLVFD- 271 + P + ++ Y + + + + T L L P I +K+ + Sbjct: 131 SDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPLISFKFGQKIFYVN 190 Query: 272 --EPFVKYVPKNEL 283 ++V +L Sbjct: 191 YLSELSEHVKLEQL 204 >6B9O-A nrPDB Length = 981 Score = 28.1 bits (61), Expect = 5.6, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 5/85 (5%) Query: 120 ISHLGEEHGDKITADLVAVENESGKQVILGYENDAR-PILYLKPGRQNTKTSHRQVQHLV 178 +H+ GD + ++I D R LY P + T + + Sbjct: 258 TNHIMWTMGDDFQYQYAESWFKQMDKLIHHVNKDGRVNALYSTP---SIYTEAKNAANQT 314 Query: 179 FMLERVIDFMPAGQDSLALLIDFKD 203 + L+ + D+ P A F Sbjct: 315 WPLK-IDDYFPYADGRNAYWTGFYT 338 >3NF1-A nrPDB Length = 311 Score = 27.7 bits (60), Expect = 7.1, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 154 ARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDF---MPAGQDSLALLIDFK--DYPDV 207 R LY + G R + +LV + +P + +L L D+PDV Sbjct: 10 GRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDV 68 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.312 0.134 0.369 Lambda K H 0.267 0.0414 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,644,899 Number of Sequences: 36641 Number of extensions: 631991 Number of successful extensions: 1899 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 24 Number of HSP's that attempted gapping in prelim test: 1854 Number of HSP's gapped (non-prelim): 46 length of query: 351 length of database: 10,336,785 effective HSP length: 98 effective length of query: 253 effective length of database: 6,745,967 effective search space: 1706729651 effective search space used: 1706729651 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 60 (27.7 bits)