BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P53610 (377 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 1N4R-B nrPDB 787 0.0 3HXF-B nrPDB 141 4e-34 3DRA-B nrPDB 115 3e-26 2ZIR-B nrPDB 111 5e-25 4LNB-B nrPDB 100 2e-21 4YDO-B nrPDB 92 5e-19 3SFX-B nrPDB 73 2e-13 5YFB-A nrPDB 31 0.76 3LWS-A nrPDB 30 1.8 3U48-A nrPDB 29 3.0 4AZ1-A nrPDB 28 8.8 >1N4R-B nrPDB Length = 377 Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/377 (100%), Positives = 377/377 (100%) Query: 1 MAATEDDRLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDM 60 MAATEDDRLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDM Sbjct: 1 MAATEDDRLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDM 60 Query: 61 LDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSG 120 LDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSG Sbjct: 61 LDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSG 120 Query: 121 HIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASC 180 HIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASC Sbjct: 121 HIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASC 180 Query: 181 ICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVF 240 ICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVF Sbjct: 181 ICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVF 240 Query: 241 SEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILS 300 SEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILS Sbjct: 241 SEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILS 300 Query: 301 TQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQS 360 TQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQS Sbjct: 301 TQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQS 360 Query: 361 WKTKDSKQCSDNVHISS 377 WKTKDSKQCSDNVHISS Sbjct: 361 WKTKDSKQCSDNVHISS 377 >3HXF-B nrPDB Length = 331 Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 95/318 (29%), Positives = 154/318 (48%), Gaps = 34/318 (10%) Query: 39 RYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGS 98 Y E R++ ++ L+ +D++ L +NK++I+ +I S Q CG Sbjct: 38 EYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQ----------HECG---- 83 Query: 99 SYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLED 158 G+ + +P H+ T + + ++ L D + ++ + +A +++LQ ED Sbjct: 84 ---GVSASIGHDP---------HLLYTLSAVQ-ILTLYDSIHVINVDKVVAYVQSLQKED 130 Query: 159 GSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLES 218 GSF G E D RF +CA +L ++++KAI ++ M++D G G ES Sbjct: 131 GSFAGDIWG-EIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSES 189 Query: 219 HGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWV 276 H G +C L + +L +V S + + W RQ G +GRP K D CYS+WV Sbjct: 190 HAGQIYCCTGFLAITSQLHQVNS----DLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWV 245 Query: 277 GATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESG 336 A+LK++ + + EK R++IL+ QD GGFA P D H FGI GLSL+ E Sbjct: 246 LASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQ 305 Query: 337 ICKVHPALNVSTRTSERL 354 I V P + +R+ Sbjct: 306 IKPVSPVFCMPEEVLQRV 323 >3DRA-B nrPDB Length = 390 Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 97/399 (24%), Positives = 173/399 (43%), Gaps = 80/399 (20%) Query: 21 LRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQ 80 L ++H +FF RCL LP S ++++L I +F L GL ++ N++ I + + Sbjct: 5 LINKHEKFFNRCLIGLPSTAQSEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIIN 64 Query: 81 VLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDL- 139 E+ + FR + Y T YD +++ T L L+IL Sbjct: 65 QFMIENNQII---SFRSTHYFQ---------KTNQKYDCPNLSSTLFALYNLLILKSPYH 112 Query: 140 SRVDKEACLAGLRALQLEDG----SFCAV----------PEGSENDMRFVYCASCICYML 185 + ++++ + L Q++DG F + E D+R Y A I +++ Sbjct: 113 TIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLM 172 Query: 186 -------------NNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCL 232 +N + +D+ +I ++ + G + ESH G TFC IASL L Sbjct: 173 KYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKL 232 Query: 233 MGKLEEVFSEKELNRIKRWCIMRQQN------------------------------GYHG 262 + + ++L K W I RQ + G++G Sbjct: 233 LN-----YPLEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNG 287 Query: 263 RPNKPVDTCYSFWVGATLKLLKI--FQYTNFEKNRNYILS-TQDRLVGGFAKWPDSHPDA 319 R NK DTCYS+W +L + + + + K +Y+L+ TQ++L GGF + PDS PD Sbjct: 288 RENKLSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDP 347 Query: 320 LHAYFGICGLSL--MEESGICKVHPALNVSTRTSERLRD 356 +H+Y + LSL E+ + +++P L ++ + + ++ Sbjct: 348 MHSYLALASLSLWNHEKFALQEINPILTITKESYQFFKE 386 >2ZIR-B nrPDB Length = 440 Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 93/340 (27%), Positives = 147/340 (43%), Gaps = 52/340 (15%) Query: 17 RLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWI 76 RL R++H + +R L+ L + Y L+ SR + ++ L L++LD Sbjct: 73 RLVLQREKHFHYLKRGLRQLTDAYECLDASRPWLCYWILHSLELLDE------------- 119 Query: 77 YSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILG 136 P D C F P +P H+A TY ++ L I+G Sbjct: 120 ------PIPQIVATDVCQFL--ELCQSPDGGFGGGPGQYP----HLAPTYAAVNALCIIG 167 Query: 137 DD--LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMK 194 + + +++E L L +L+ DGSF + G E D+R YCA+ + + N + + Sbjct: 168 TEEAYNVINREKLLQYLYSLKQPDGSF-LMHVGGEVDVRSAYCAASVASLTNIITPDLFE 226 Query: 195 KAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELN--RIKRWC 252 +I R +++ G+ G+E+HGG TFCG+A+L ++ K E+ LN + +W Sbjct: 227 GTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKK------ERSLNLKSLLQWV 280 Query: 253 IMRQ---QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTN-----------FEKN--RN 296 RQ + G+ GR NK VD CYSFW L LL + F + + Sbjct: 281 TSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQE 340 Query: 297 YILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESG 336 YIL GG P D H + + GLS+ + G Sbjct: 341 YILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFG 380 Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust. Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 8/173 (4%) Query: 178 ASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLE 237 A CI ++ ++ +K + Y+ D G E S +C + + L Sbjct: 162 ALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAAS----VASLT 217 Query: 238 EVFSEKELNRIKRWCIMRQQN---GYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKN 294 + + W I R QN G G P Y+F A L +LK + N + Sbjct: 218 NIITPDLFEGTAEW-IARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 276 Query: 295 RNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVS 347 ++ S Q R GGF + D ++++ L L+ + + PAL++S Sbjct: 277 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMS 329 >4LNB-B nrPDB Length = 519 Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 87/351 (24%), Positives = 142/351 (40%), Gaps = 60/351 (17%) Query: 22 RDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQV 81 R H+ + L+ P + +L+ SR + ++AL+GL +L ++ +I + Q Sbjct: 126 RKDHLEYLYDSLEDYPASFVALDASRPWMVYWALAGLCLLGEDVTRFRERVISTFTAAQN 185 Query: 82 LPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSR 141 + SSY + LS ++ G++ + Sbjct: 186 STGGIGGGHGQMSHVASSYAAV-------------------------LSIAMVGGEEAFK 220 Query: 142 -VDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAI--- 197 +D++A L L+ DG F V EG E D+R YCA + +L+ + + Sbjct: 221 LIDRKAMWKWLGKLKQPDGGF-TVCEGGEEDVRGAYCAMVVHALLDLPLALPPEAEARQN 279 Query: 198 ----------SYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSE-KELN 246 Y+ R +Y+ G++ G E+HG FC +A LCL+G+ E V + Sbjct: 280 GLETFTDGLPEYLSRCQTYEGGISGSPGSEAHGAYAFCALACLCLLGRPEVVVPRYMNIA 339 Query: 247 RIKRWCIMRQ---QNGYHGRPNKPVDTCYSFWVGATLKLLK----------------IFQ 287 + W RQ + G+ GR NK VD CYS WVG L++ + Sbjct: 340 TLLPWLSARQYAPEGGFSGRTNKLVDGCYSHWVGNCWPLVQAALDGTQPLAGPKRSSVGN 399 Query: 288 YTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGIC 338 + E YILS +GG P HPD+ H + + GLS ++ C Sbjct: 400 LYSREGLTRYILSCCQCKLGGLRDKPGKHPDSYHTCYALTGLSTVQYYHYC 450 >4YDO-B nrPDB Length = 587 Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 87/359 (24%), Positives = 147/359 (40%), Gaps = 57/359 (15%) Query: 20 FLRDRHVRFFQRCL-QVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYS 78 F D H+++ L +P Y L+ + + ++ L+ ++ + + I++ I + Sbjct: 166 FYIDAHLKYILSSLIDPMPSGYQVLDVNHSWMIYWLLNSYYLIQNPTMEINQSILDLIVN 225 Query: 79 LQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLII---- 134 + +C G S G+PF+ GH+A TY + LI+ Sbjct: 226 ----------KITKCINYGDSLSGVPFDGIGGGNNQ----LGHLASTYAAILTLILTDQY 271 Query: 135 -LGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLN--NW--- 188 L D+L + ++ L + G+ + E E D R YCA I +LN N+ Sbjct: 272 ELLDNLRELIRDWLLTLKKRSSCGSGASFIMHENGEMDARSTYCALIIINLLNLTNYEEN 331 Query: 189 --SGMDMKKAI----SYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSE 242 S ++ I +++ +Y+ G + E+HGG T+C +AS L+ + FS Sbjct: 332 SSSPEELDPLIDGVENWLNSCQTYEGGFSNIPNTEAHGGYTYCALASYFLLYDNRKQFSS 391 Query: 243 KEL---------NRIKRWCIMRQ---QNGYHGRPNKPVDTCYSFWVGATLKLLKIF---- 286 ++ W + RQ + G GR NK VD CY FW+G LL++ Sbjct: 392 GSTSSLSNSVCWEKLLEWSVHRQHELEGGVDGRTNKLVDACYGFWIGGLSPLLQLIIMNS 451 Query: 287 ----------QYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEES 335 + + EK R Y+L GGF P D H + + GLS++E S Sbjct: 452 SQGQGQQQEVKVFDEEKLRQYLLIIAQDESGGFKDKPGKQVDYYHTNYSLSGLSILEHS 510 >3SFX-B nrPDB Length = 520 Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 82/314 (26%), Positives = 127/314 (40%), Gaps = 64/314 (20%) Query: 4 TEDDRLAGSGEGERLDFLRDR-HVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLD 62 T D S G+R LR + H +F LP ++ SL+ SR + F+ + LD+L Sbjct: 44 TADPNALVSEHGKRYSGLRKQEHTQFLASSFFQLPGKFVSLDASRPWLVFWTVHSLDLLG 103 Query: 63 -SLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGH 121 +LD KD ++ + L L + GF G P N S+ P H Sbjct: 104 VALDQGTKDRVVSTL--LHFLSP-------KGGFGGG-----PAN-SQIP---------H 139 Query: 122 IAMTYTGLSCLIILGDDLSRVDKEACLAGLRAL-------QLEDGSFCAVPEGSENDMRF 174 + TY + L I G+D S + A +++ + DG F V EG E D+R Sbjct: 140 LLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFV-VCEGGEVDVRG 198 Query: 175 VYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLA----------------------- 211 YC + +L+ + + ++ +Y+ G A Sbjct: 199 TYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSC 258 Query: 212 QGAGLESHGGSTFCGIASLCLMG--KLEEVFSEKELNRIKRWCIMRQQN-----GYHGRP 264 + + E+HGG T C + S L+ L + N RW +++Q G+ GR Sbjct: 259 RVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRT 318 Query: 265 NKPVDTCYSFWVGA 278 NK VD CYS+WVG Sbjct: 319 NKLVDGCYSWWVGG 332 >5YFB-A nrPDB Length = 703 Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 22/126 (17%) Query: 35 VLPERYSSLETSRL-TIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRC 93 VL E SS+E R T+A + +S LD+L + V+K DI + Y +L + R Sbjct: 491 VLGEVSSSMEECRAETVALYLVSNLDILKIFNYVDKQDIEDIQYITFLL-------MARA 543 Query: 94 GFRGSSYLGIPFNP-SKNPGTAHPYDSGHIA--MTYTGLSCLIILGDD-------LSRVD 143 G R + ++P +K G AH I + G++ L ++ D RVD Sbjct: 544 GLRALEF----YDPATKKHGQAHMQARMGITQYLIQAGIARLELIQDANGELENLYVRVD 599 Query: 144 KEACLA 149 +E L+ Sbjct: 600 REKVLS 605 >3LWS-A nrPDB Length = 357 Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust. Identities = 13/48 (27%), Positives = 24/48 (50%) Query: 312 WPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQ 359 W D + AY +C L + E+ G+ ++HP + ++RL L + Sbjct: 82 WSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAADRLMTLDE 129 >3U48-A nrPDB Length = 775 Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 191 MDMKKAISYIRRSMSYDNGLAQ----GAGLESHGGSTFCGIASLCLMGKLEEVFSEKELN 246 M M + I+ + M+ D + Q GAG + G ++ GIA GK+ +F+ K + Sbjct: 1 MKMNQFINALMAKMTLDEKIGQLNLPGAGDITTGQASSSGIAQKIKEGKVGGLFNIKSVT 60 Query: 247 RIKR 250 +IK Sbjct: 61 KIKE 64 >4AZ1-A nrPDB Length = 302 Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Query: 291 FEKNRNYILSTQDRLVGGFAK----WPDSHPDALHAYFGICGLSLMEESG 336 +EK + ++ GGF K WP+ A G CGL++ E+ G Sbjct: 109 YEKKISLVIMVTKLEEGGFVKADRYWPEERGSGSIAVSGNCGLTISEDPG 158 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 1N4R-B nrPDB 539 e-154 2ZIR-B nrPDB 350 5e-97 3HXF-B nrPDB 345 2e-95 3DRA-B nrPDB 341 3e-94 4YDO-B nrPDB 340 7e-94 4LNB-B nrPDB 336 8e-93 3SFX-B nrPDB 313 8e-86 Sequences not found previously or not previously below threshold: 2IW3-A nrPDB 28 6.9 5KR3-A nrPDB 27 9.6 CONVERGED! >1N4R-B nrPDB Length = 377 Score = 539 bits (1388), Expect = e-154, Method: Composition-based stats. Identities = 377/377 (100%), Positives = 377/377 (100%) Query: 1 MAATEDDRLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDM 60 MAATEDDRLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDM Sbjct: 1 MAATEDDRLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDM 60 Query: 61 LDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSG 120 LDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSG Sbjct: 61 LDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSG 120 Query: 121 HIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASC 180 HIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASC Sbjct: 121 HIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASC 180 Query: 181 ICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVF 240 ICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVF Sbjct: 181 ICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVF 240 Query: 241 SEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILS 300 SEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILS Sbjct: 241 SEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILS 300 Query: 301 TQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQS 360 TQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQS Sbjct: 301 TQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQS 360 Query: 361 WKTKDSKQCSDNVHISS 377 WKTKDSKQCSDNVHISS Sbjct: 361 WKTKDSKQCSDNVHISS 377 >2ZIR-B nrPDB Length = 440 Score = 350 bits (898), Expect = 5e-97, Method: Composition-based stats. Identities = 97/392 (24%), Positives = 156/392 (39%), Gaps = 66/392 (16%) Query: 17 RLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWI 76 RL R++H + +R L+ L + Y L+ SR + ++ L L++LD Sbjct: 73 RLVLQREKHFHYLKRGLRQLTDAYECLDASRPWLCYWILHSLELLDE------------- 119 Query: 77 YSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILG 136 P D C F P +P H+A TY ++ L I+G Sbjct: 120 ------PIPQIVATDVCQFL--ELCQSPDGGFGGGPGQYP----HLAPTYAAVNALCIIG 167 Query: 137 DD--LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMK 194 + + +++E L L +L+ DGSF + G E D+R YCA+ + + N + + Sbjct: 168 TEEAYNVINREKLLQYLYSLKQPDGSF-LMHVGGEVDVRSAYCAASVASLTNIITPDLFE 226 Query: 195 KAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIM 254 +I R +++ G+ G+E+HGG TFCG+A+L ++ K L + +W Sbjct: 227 GTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKER----SLNLKSLLQWVTS 282 Query: 255 RQ---QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTN-------------FEKNRNYI 298 RQ + G+ GR NK VD CYSFW L LL + + + YI Sbjct: 283 RQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYI 342 Query: 299 LSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESG----------------ICKVHP 342 L GG P D H + + GLS+ + G + HP Sbjct: 343 LMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGAMLHDVVMGVPENVLQPTHP 402 Query: 343 ALNV-STRTSERLRDLHQSWKTKDSKQCSDNV 373 N+ + + Q ++C D V Sbjct: 403 VYNIGPDKVIQATTHFLQK-PVPGFEECEDAV 433 >3HXF-B nrPDB Length = 331 Score = 345 bits (885), Expect = 2e-95, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 159/339 (46%), Gaps = 35/339 (10%) Query: 19 DFLRDRHVRFFQR-CLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIY 77 L ++H + + Y E R++ ++ L+ +D++ L +NK++I+ +I Sbjct: 17 TLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIK 76 Query: 78 SLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGD 137 S Q CG G+ + +P H+ T + + ++ L D Sbjct: 77 SCQ----------HECG-------GVSASIGHDP---------HLLYTLSAVQ-ILTLYD 109 Query: 138 DLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAI 197 + ++ + +A +++LQ EDGSF E D RF +CA +L ++++KAI Sbjct: 110 SIHVINVDKVVAYVQSLQKEDGSFAGDIW-GEIDTRFSFCAVATLALLGKLDAINVEKAI 168 Query: 198 SYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ- 256 ++ M++D G G ESH G +C L + +L +V S + + W RQ Sbjct: 169 EFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNS----DLLGWWLCERQL 224 Query: 257 -QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDS 315 G +GRP K D CYS+WV A+LK++ + + EK R++IL+ QD GGFA P Sbjct: 225 PSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGD 284 Query: 316 HPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERL 354 D H FGI GLSL+ E I V P + +R+ Sbjct: 285 MVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPEEVLQRV 323 >3DRA-B nrPDB Length = 390 Score = 341 bits (874), Expect = 3e-94, Method: Composition-based stats. Identities = 97/400 (24%), Positives = 171/400 (42%), Gaps = 80/400 (20%) Query: 20 FLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSL 79 L ++H +FF RCL LP S ++++L I +F L GL ++ N++ I + + Sbjct: 4 LLINKHEKFFNRCLIGLPSTAQSEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFII 63 Query: 80 QVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDL 139 E+ + FR + Y T YD +++ T L L+IL Sbjct: 64 NQFMIENNQII---SFRSTHYFQ---------KTNQKYDCPNLSSTLFALYNLLILKSPY 111 Query: 140 S-RVDKEACLAGLRALQLED----GSFCAV----------PEGSENDMRFVYCASCICYM 184 ++++ + L Q++D G F + E D+R Y A I ++ Sbjct: 112 HTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHL 171 Query: 185 L-------------NNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLC 231 + +N + +D+ +I ++ + G + ESH G TFC IASL Sbjct: 172 MKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLK 231 Query: 232 LMGKLEEVFSEKELNRIKRWCIMRQQ------------------------------NGYH 261 L+ + ++L K W I RQ G++ Sbjct: 232 LLN-----YPLEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFN 286 Query: 262 GRPNKPVDTCYSFWVGATLKLLKI--FQYTNFEKNRNYILS-TQDRLVGGFAKWPDSHPD 318 GR NK DTCYS+W +L + + + + K +Y+L+ TQ++L GGF + PDS PD Sbjct: 287 GRENKLSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPD 346 Query: 319 ALHAYFGICGLSL--MEESGICKVHPALNVSTRTSERLRD 356 +H+Y + LSL E+ + +++P L ++ + + ++ Sbjct: 347 PMHSYLALASLSLWNHEKFALQEINPILTITKESYQFFKE 386 >4YDO-B nrPDB Length = 587 Score = 340 bits (871), Expect = 7e-94, Method: Composition-based stats. Identities = 86/359 (23%), Positives = 145/359 (40%), Gaps = 57/359 (15%) Query: 20 FLRDRHVRFFQRCL-QVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYS 78 F D H+++ L +P Y L+ + + ++ L+ ++ + + I++ I + Sbjct: 166 FYIDAHLKYILSSLIDPMPSGYQVLDVNHSWMIYWLLNSYYLIQNPTMEINQSILDLIVN 225 Query: 79 LQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLII---- 134 + +C G S G+PF+ GH+A TY + LI+ Sbjct: 226 ----------KITKCINYGDSLSGVPFDGIGGGNNQ----LGHLASTYAAILTLILTDQY 271 Query: 135 -LGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNW----- 188 L D+L + ++ L + G+ + E E D R YCA I +LN Sbjct: 272 ELLDNLRELIRDWLLTLKKRSSCGSGASFIMHENGEMDARSTYCALIIINLLNLTNYEEN 331 Query: 189 --SGMDMKKAI----SYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSE 242 S ++ I +++ +Y+ G + E+HGG T+C +AS L+ + FS Sbjct: 332 SSSPEELDPLIDGVENWLNSCQTYEGGFSNIPNTEAHGGYTYCALASYFLLYDNRKQFSS 391 Query: 243 KEL---------NRIKRWCIMRQ---QNGYHGRPNKPVDTCYSFWVGATLKLLKIF---- 286 ++ W + RQ + G GR NK VD CY FW+G LL++ Sbjct: 392 GSTSSLSNSVCWEKLLEWSVHRQHELEGGVDGRTNKLVDACYGFWIGGLSPLLQLIIMNS 451 Query: 287 ----------QYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEES 335 + + EK R Y+L GGF P D H + + GLS++E S Sbjct: 452 SQGQGQQQEVKVFDEEKLRQYLLIIAQDESGGFKDKPGKQVDYYHTNYSLSGLSILEHS 510 >4LNB-B nrPDB Length = 519 Score = 336 bits (862), Expect = 8e-93, Method: Composition-based stats. Identities = 91/377 (24%), Positives = 148/377 (39%), Gaps = 66/377 (17%) Query: 20 FLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSL 79 R H+ + L+ P + +L+ SR + ++AL+GL +L ++ +I + Sbjct: 124 LQRKDHLEYLYDSLEDYPASFVALDASRPWMVYWALAGLCLLGEDVTRFRERVISTFTAA 183 Query: 80 QVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDL 139 Q + SSY + LS ++ G++ Sbjct: 184 QNSTGGIGGGHGQMSHVASSYAAV-------------------------LSIAMVGGEEA 218 Query: 140 SR-VDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAI- 197 + +D++A L L+ DG F V EG E D+R YCA + +L+ + + Sbjct: 219 FKLIDRKAMWKWLGKLKQPDGGF-TVCEGGEEDVRGAYCAMVVHALLDLPLALPPEAEAR 277 Query: 198 ------------SYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSE-KE 244 Y+ R +Y+ G++ G E+HG FC +A LCL+G+ E V Sbjct: 278 QNGLETFTDGLPEYLSRCQTYEGGISGSPGSEAHGAYAFCALACLCLLGRPEVVVPRYMN 337 Query: 245 LNRIKRWCIMRQ---QNGYHGRPNKPVDTCYSFWVGATLKLLK----------------I 285 + + W RQ + G+ GR NK VD CYS WVG L++ + Sbjct: 338 IATLLPWLSARQYAPEGGFSGRTNKLVDGCYSHWVGNCWPLVQAALDGTQPLAGPKRSSV 397 Query: 286 FQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALN 345 + E YILS +GG P HPD+ H + + GLS ++ C + Sbjct: 398 GNLYSREGLTRYILSCCQCKLGGLRDKPGKHPDSYHTCYALTGLSTVQYYHYCTDSSVSS 457 Query: 346 VSTRTSERLRDLHQSWK 362 +S SWK Sbjct: 458 KDDFSSAF------SWK 468 >3SFX-B nrPDB Length = 520 Score = 313 bits (802), Expect = 8e-86, Method: Composition-based stats. Identities = 86/405 (21%), Positives = 137/405 (33%), Gaps = 99/405 (24%) Query: 4 TEDDRLAGSGEGERLDFLRDR-HVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLD 62 T D S G+R LR + H +F LP ++ SL+ SR + F+ + LD+L Sbjct: 44 TADPNALVSEHGKRYSGLRKQEHTQFLASSFFQLPGKFVSLDASRPWLVFWTVHSLDLLG 103 Query: 63 -SLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGH 121 +LD KD ++ + + P H Sbjct: 104 VALDQGTKDRVVSTLL----------------------HFLSPKGGFGGGPANSQ--IPH 139 Query: 122 IAMTYTGLSCLIILGDDLSRVDKEACLAGLRA-------LQLEDGSFCAVPEGSENDMRF 174 + TY + L I G+D S + A ++ + DG F V EG E D+R Sbjct: 140 LLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFV-VCEGGEVDVRG 198 Query: 175 VYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQ---------------------- 212 YC + +L+ + + ++ +Y+ G A Sbjct: 199 TYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSC 258 Query: 213 -GAGLESHGGSTFCGIASLCLMG--KLEEVFSEKELNRIKRWCIMRQ-----QNGYHGRP 264 + E+HGG T C + S L+ L + N RW +++Q G+ GR Sbjct: 259 RVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRT 318 Query: 265 NKPVDTCYSFWVGATLKLLK--------------IFQYTNFEK----------------- 293 NK VD CYS+WVG + + + EK Sbjct: 319 NKLVDGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEKEGDWEDVPPIPPIFNRV 378 Query: 294 -NRNYILSTQDRL---VGGFAKWPDSHPDALHAYFGICGLSLMEE 334 + + L + GG P PD H + GLS+ + Sbjct: 379 ALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQH 423 >2IW3-A nrPDB Length = 986 Score = 27.9 bits (60), Expect = 6.9, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 1/99 (1%) Query: 71 DIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLS 130 D+ E + S Q P + + C G + + + A T+ Sbjct: 862 DMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQR-P 920 Query: 131 CLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSE 169 LI+L + + +D+++ A +AL+ +G + +E Sbjct: 921 HLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAE 959 >5KR3-A nrPDB Length = 479 Score = 27.5 bits (59), Expect = 9.6, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 4/90 (4%) Query: 109 KNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGS 168 P SGH L+ L IL + + A L+ Q +F A P Sbjct: 337 HGPMGHGWTYSGHPICAAAALANLDILERENLTGNAADVGAYLQ--QRLHEAFGAHPLVG 394 Query: 169 ENDMRFVYCASCICYMLNNWSGMDMKKAIS 198 E +R V + + +M + + A+ Sbjct: 395 E--VRGVGMLAALEFMADKDARTPFDPALK 422 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.313 0.122 0.323 Lambda K H 0.267 0.0373 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,407,906 Number of Sequences: 36641 Number of extensions: 506396 Number of successful extensions: 1233 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 1126 Number of HSP's gapped (non-prelim): 32 length of query: 377 length of database: 10,336,785 effective HSP length: 99 effective length of query: 278 effective length of database: 6,709,326 effective search space: 1865192628 effective search space used: 1865192628 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 60 (27.9 bits)