BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P53207 (620 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 6G90-J nrPDB 1265 0.0 3V53-A nrPDB 34 0.20 4BN9-A nrPDB 32 0.59 2CFV-A nrPDB 31 1.5 4XBH-A nrPDB 31 2.0 4CTH-A nrPDB 30 3.2 5O71-A nrPDB 29 7.8 >6G90-J nrPDB Length = 620 Score = 1265 bits (3273), Expect = 0.0, Method: Compositional matrix adjust. Identities = 620/620 (100%), Positives = 620/620 (100%) Query: 1 MRDIVFVSPQLYLSSQEGWKSDSAKSGFIPILKNDLQRFQDSLKHIVDARNSLSETLLNS 60 MRDIVFVSPQLYLSSQEGWKSDSAKSGFIPILKNDLQRFQDSLKHIVDARNSLSETLLNS Sbjct: 1 MRDIVFVSPQLYLSSQEGWKSDSAKSGFIPILKNDLQRFQDSLKHIVDARNSLSETLLNS 60 Query: 61 NDDGSIHNSDQNTGLNKDKEASIADNNSANKCATSSSRYQELKQFLPISLDQQIHTVSLQ 120 NDDGSIHNSDQNTGLNKDKEASIADNNSANKCATSSSRYQELKQFLPISLDQQIHTVSLQ Sbjct: 61 NDDGSIHNSDQNTGLNKDKEASIADNNSANKCATSSSRYQELKQFLPISLDQQIHTVSLQ 120 Query: 121 GVSSSFSRGQIESLLDHCLNLALTETQSNSALKVEAWSSFSSFLDTQDIFIRFSKVDEDE 180 GVSSSFSRGQIESLLDHCLNLALTETQSNSALKVEAWSSFSSFLDTQDIFIRFSKVDEDE Sbjct: 121 GVSSSFSRGQIESLLDHCLNLALTETQSNSALKVEAWSSFSSFLDTQDIFIRFSKVDEDE 180 Query: 181 AFVNTLNYCKALFAFIRKLHEDFKIELHLDLNTKEYVEDRTGTIPSVKPEKASEFYSVFK 240 AFVNTLNYCKALFAFIRKLHEDFKIELHLDLNTKEYVEDRTGTIPSVKPEKASEFYSVFK Sbjct: 181 AFVNTLNYCKALFAFIRKLHEDFKIELHLDLNTKEYVEDRTGTIPSVKPEKASEFYSVFK 240 Query: 241 NIEDQTDERNSKKEQLDDSSTQYKVDTNTLSDLPSDALDQLCKDIIEFRTKVVSIEKEKK 300 NIEDQTDERNSKKEQLDDSSTQYKVDTNTLSDLPSDALDQLCKDIIEFRTKVVSIEKEKK Sbjct: 241 NIEDQTDERNSKKEQLDDSSTQYKVDTNTLSDLPSDALDQLCKDIIEFRTKVVSIEKEKK 300 Query: 301 MKSTYEESRRQRHQMQKVFDQIRKNHSGAKGSANTEEEDTNMEDEDEEDDTEDDLALEKR 360 MKSTYEESRRQRHQMQKVFDQIRKNHSGAKGSANTEEEDTNMEDEDEEDDTEDDLALEKR Sbjct: 301 MKSTYEESRRQRHQMQKVFDQIRKNHSGAKGSANTEEEDTNMEDEDEEDDTEDDLALEKR 360 Query: 361 KEERDLEESNRRYEDMLHQLHSNTEPKIKSIRADIMSAENYEEHLEKNRSLYLKELLHLA 420 KEERDLEESNRRYEDMLHQLHSNTEPKIKSIRADIMSAENYEEHLEKNRSLYLKELLHLA Sbjct: 361 KEERDLEESNRRYEDMLHQLHSNTEPKIKSIRADIMSAENYEEHLEKNRSLYLKELLHLA 420 Query: 421 NDVHYDHHRSFKEQEERRDEEDRAKNGNAKELAPIQLSDGKAISAGKAAAITLPEGTVKS 480 NDVHYDHHRSFKEQEERRDEEDRAKNGNAKELAPIQLSDGKAISAGKAAAITLPEGTVKS Sbjct: 421 NDVHYDHHRSFKEQEERRDEEDRAKNGNAKELAPIQLSDGKAISAGKAAAITLPEGTVKS 480 Query: 481 ENYNADKNVSESSEHVKIKFDFKKAIDHSVESSSEDEGYRESELPPTKPSERSAAEDRLP 540 ENYNADKNVSESSEHVKIKFDFKKAIDHSVESSSEDEGYRESELPPTKPSERSAAEDRLP Sbjct: 481 ENYNADKNVSESSEHVKIKFDFKKAIDHSVESSSEDEGYRESELPPTKPSERSAAEDRLP 540 Query: 541 FTADELNIRLTNLKESRYVDELVREFLGVYEDELVEYILENIRVNQSKQALLNELRETFD 600 FTADELNIRLTNLKESRYVDELVREFLGVYEDELVEYILENIRVNQSKQALLNELRETFD Sbjct: 541 FTADELNIRLTNLKESRYVDELVREFLGVYEDELVEYILENIRVNQSKQALLNELRETFD 600 Query: 601 EDGETIADRLWSRKEFRLGT 620 EDGETIADRLWSRKEFRLGT Sbjct: 601 EDGETIADRLWSRKEFRLGT 620 >3V53-A nrPDB Length = 119 Score = 33.9 bits (76), Expect = 0.20, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 32/54 (59%) Query: 558 YVDELVREFLGVYEDELVEYILENIRVNQSKQALLNELRETFDEDGETIADRLW 611 ++++ + E++G E LV+++ + + S Q++L+++ DE+ E ++W Sbjct: 50 WINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKMW 103 >4BN9-A nrPDB Length = 201 Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust. Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 1/87 (1%) Query: 236 YSVFKNIEDQTDERNSKKEQLDDSSTQYKVDTNTLSDLPSDALDQLCKDIIEFRTKVVSI 295 Y++ +N++D+ + KE + S T + T L L DA D+L +I+ K ++ Sbjct: 13 YALGRNVQDEEKVIETIKEAVRFSPTAFNSQTGRLLILTGDAQDKLWDEIVAPELK-AAM 71 Query: 296 EKEKKMKSTYEESRRQRHQMQKVFDQI 322 E + +S ++ +R + + F I Sbjct: 72 EAQGVPESAWDNTRAKLDGFKAAFGTI 98 >2CFV-A nrPDB Length = 316 Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 456 QLSDGKAISAGKAAAITLPEGTVKSENYNADKNVSESSEHVKIKFDFKKAIDHSVESSSE 515 Q D I+ + I LPE T++ KN+ S H +F F A DH V +++ Sbjct: 162 QAQDYGDITVAMTSEIVLPEWTIRDFTV---KNIQTSESHPLRQFHFTSAPDHGVPDTTD 218 >4XBH-A nrPDB Length = 696 Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 6/46 (13%) Query: 571 EDELVEYILENIRVNQSKQALLNELRETFDED----GETIADRLWS 612 EDE E I++N++ +QSKQ L +LRE D+D G I + +S Sbjct: 450 EDEYFENIIQNLKFSQSKQ--LKKLREKVDKDEWITGAAIVNAFYS 493 >4CTH-A nrPDB Length = 709 Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 6/46 (13%) Query: 571 EDELVEYILENIRVNQSKQALLNELRETFDED----GETIADRLWS 612 EDE E I++N++ +QSKQ L +LRE D+D G + + +S Sbjct: 463 EDEYFENIIQNLKFSQSKQ--LKKLREKVDKDEWISGAAVVNAFYS 506 >5O71-A nrPDB Length = 716 Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Query: 508 HSVESSSEDEGYRESELPPTKPSERSAAEDR----LPFTADELNIRLTNLKESRYVDE 561 ++ S++E +G SELP T PS +A R PFT + L R++ E Sbjct: 487 QTLPSTTEQQGALSSELPSTSPSSVAAISSRSVIHKPFTQSRIPPDLPMHPAPRHITE 544 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 6G90-J nrPDB 1159 0.0 Sequences not found previously or not previously below threshold: 5GM6-Y nrPDB 39 0.005 3KYC-B nrPDB 37 0.022 3V53-A nrPDB 36 0.039 4XBH-A nrPDB 36 0.067 4CTH-A nrPDB 35 0.100 4K92-A nrPDB 33 0.34 2CJK-A nrPDB 33 0.37 5VY8-A nrPDB 33 0.44 4BN9-A nrPDB 33 0.46 2CFV-A nrPDB 32 0.61 4OEU-A nrPDB 32 0.83 6MAT-A nrPDB 32 0.86 6H4J-A nrPDB 32 1.1 5O71-A nrPDB 31 1.6 6O9L-1 nrPDB 30 2.7 6NMI-C nrPDB 30 2.7 4MMP-A nrPDB 30 2.9 2P22-C nrPDB 30 4.3 5OQL-B nrPDB 29 4.5 3VKK-A nrPDB 29 5.0 3RQF-A nrPDB 29 8.5 CONVERGED! >6G90-J nrPDB Length = 620 Score = 1159 bits (2997), Expect = 0.0, Method: Composition-based stats. Identities = 620/620 (100%), Positives = 620/620 (100%) Query: 1 MRDIVFVSPQLYLSSQEGWKSDSAKSGFIPILKNDLQRFQDSLKHIVDARNSLSETLLNS 60 MRDIVFVSPQLYLSSQEGWKSDSAKSGFIPILKNDLQRFQDSLKHIVDARNSLSETLLNS Sbjct: 1 MRDIVFVSPQLYLSSQEGWKSDSAKSGFIPILKNDLQRFQDSLKHIVDARNSLSETLLNS 60 Query: 61 NDDGSIHNSDQNTGLNKDKEASIADNNSANKCATSSSRYQELKQFLPISLDQQIHTVSLQ 120 NDDGSIHNSDQNTGLNKDKEASIADNNSANKCATSSSRYQELKQFLPISLDQQIHTVSLQ Sbjct: 61 NDDGSIHNSDQNTGLNKDKEASIADNNSANKCATSSSRYQELKQFLPISLDQQIHTVSLQ 120 Query: 121 GVSSSFSRGQIESLLDHCLNLALTETQSNSALKVEAWSSFSSFLDTQDIFIRFSKVDEDE 180 GVSSSFSRGQIESLLDHCLNLALTETQSNSALKVEAWSSFSSFLDTQDIFIRFSKVDEDE Sbjct: 121 GVSSSFSRGQIESLLDHCLNLALTETQSNSALKVEAWSSFSSFLDTQDIFIRFSKVDEDE 180 Query: 181 AFVNTLNYCKALFAFIRKLHEDFKIELHLDLNTKEYVEDRTGTIPSVKPEKASEFYSVFK 240 AFVNTLNYCKALFAFIRKLHEDFKIELHLDLNTKEYVEDRTGTIPSVKPEKASEFYSVFK Sbjct: 181 AFVNTLNYCKALFAFIRKLHEDFKIELHLDLNTKEYVEDRTGTIPSVKPEKASEFYSVFK 240 Query: 241 NIEDQTDERNSKKEQLDDSSTQYKVDTNTLSDLPSDALDQLCKDIIEFRTKVVSIEKEKK 300 NIEDQTDERNSKKEQLDDSSTQYKVDTNTLSDLPSDALDQLCKDIIEFRTKVVSIEKEKK Sbjct: 241 NIEDQTDERNSKKEQLDDSSTQYKVDTNTLSDLPSDALDQLCKDIIEFRTKVVSIEKEKK 300 Query: 301 MKSTYEESRRQRHQMQKVFDQIRKNHSGAKGSANTEEEDTNMEDEDEEDDTEDDLALEKR 360 MKSTYEESRRQRHQMQKVFDQIRKNHSGAKGSANTEEEDTNMEDEDEEDDTEDDLALEKR Sbjct: 301 MKSTYEESRRQRHQMQKVFDQIRKNHSGAKGSANTEEEDTNMEDEDEEDDTEDDLALEKR 360 Query: 361 KEERDLEESNRRYEDMLHQLHSNTEPKIKSIRADIMSAENYEEHLEKNRSLYLKELLHLA 420 KEERDLEESNRRYEDMLHQLHSNTEPKIKSIRADIMSAENYEEHLEKNRSLYLKELLHLA Sbjct: 361 KEERDLEESNRRYEDMLHQLHSNTEPKIKSIRADIMSAENYEEHLEKNRSLYLKELLHLA 420 Query: 421 NDVHYDHHRSFKEQEERRDEEDRAKNGNAKELAPIQLSDGKAISAGKAAAITLPEGTVKS 480 NDVHYDHHRSFKEQEERRDEEDRAKNGNAKELAPIQLSDGKAISAGKAAAITLPEGTVKS Sbjct: 421 NDVHYDHHRSFKEQEERRDEEDRAKNGNAKELAPIQLSDGKAISAGKAAAITLPEGTVKS 480 Query: 481 ENYNADKNVSESSEHVKIKFDFKKAIDHSVESSSEDEGYRESELPPTKPSERSAAEDRLP 540 ENYNADKNVSESSEHVKIKFDFKKAIDHSVESSSEDEGYRESELPPTKPSERSAAEDRLP Sbjct: 481 ENYNADKNVSESSEHVKIKFDFKKAIDHSVESSSEDEGYRESELPPTKPSERSAAEDRLP 540 Query: 541 FTADELNIRLTNLKESRYVDELVREFLGVYEDELVEYILENIRVNQSKQALLNELRETFD 600 FTADELNIRLTNLKESRYVDELVREFLGVYEDELVEYILENIRVNQSKQALLNELRETFD Sbjct: 541 FTADELNIRLTNLKESRYVDELVREFLGVYEDELVEYILENIRVNQSKQALLNELRETFD 600 Query: 601 EDGETIADRLWSRKEFRLGT 620 EDGETIADRLWSRKEFRLGT Sbjct: 601 EDGETIADRLWSRKEFRLGT 620 >5GM6-Y nrPDB Length = 876 Score = 39.4 bits (90), Expect = 0.005, Method: Composition-based stats. Identities = 49/190 (25%), Positives = 77/190 (40%), Gaps = 20/190 (10%) Query: 238 VFKNIEDQTDERNSKKEQLDDSSTQYKVDTNTLSDLPSDALDQLCKDIIEFRTKVVS--- 294 VF N ++ N K EQL K D S+ L D E TK S Sbjct: 61 VFSNTNQGPEKNNLKGEQLGSQKKSSKYDEKITSNNELTTKKGLLGD-SENETKYASSNS 119 Query: 295 ---IEKEKKMKSTYEESRRQRHQMQKVFDQIRKNHSGAKGSANTEEEDTNMEDEDEEDDT 351 +E K+K+ E + R +M + Q+R +G + +D +E D+ D Sbjct: 120 KFNVEVTHKIKNAKEIDKINRQRMWEE-QQLRNAMAG----QSDHPDDITLEGSDKYDYV 174 Query: 352 ED-DLALEKRKEERD-LEESNRRYEDMLHQLHSNTEPKIKSIRA--DIMSAENYEEHL-- 405 D D ++ EE D L E +YE L Q E +I +I+ ++ Y++ L Sbjct: 175 FDTDAMIDYTNEEDDLLPEEKLQYEARLAQALETEEKRILTIQEARKLLPVHQYKDELLQ 234 Query: 406 --EKNRSLYL 413 +KN+ L + Sbjct: 235 EIKKNQVLII 244 >3KYC-B nrPDB Length = 660 Score = 37.0 bits (84), Expect = 0.022, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 65/160 (40%), Gaps = 33/160 (20%) Query: 217 VEDRTGTIPSVKPEKASEFYSVFKNIEDQTDE---RNSKKEQLDDSSTQYKVDTNTL--S 271 +ED GTI E +E N + E RN + Q DD Y + N L Sbjct: 502 IEDGKGTILISSEEGETE-----ANNHKKLSEFGIRNGSRLQADDFLQDYTLLINILHSE 556 Query: 272 DLPSDALDQLCKDIIEFRTKVVSIEKEKKMKSTYEESRRQRHQMQKVFDQIRKNHSGAKG 331 DL D ++ D E KV + E KS S GA+ Sbjct: 557 DLGKDVEFEVVGDAPE---KVGPKQAEDAAKSITNGS-----------------DDGAQP 596 Query: 332 SANT--EEEDTNMEDEDEEDDTED-DLALEKRKEERDLEE 368 S +T E++D + D DEED + + D++ E+R +R L+E Sbjct: 597 STSTAQEQDDVLIVDSDEEDSSNNADVSEEERSRKRKLDE 636 >3V53-A nrPDB Length = 119 Score = 36.3 bits (82), Expect = 0.039, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 32/54 (59%) Query: 558 YVDELVREFLGVYEDELVEYILENIRVNQSKQALLNELRETFDEDGETIADRLW 611 ++++ + E++G E LV+++ + + S Q++L+++ DE+ E ++W Sbjct: 50 WINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKMW 103 >4XBH-A nrPDB Length = 696 Score = 35.5 bits (80), Expect = 0.067, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 6/50 (12%) Query: 567 LGVYEDELVEYILENIRVNQSKQALLNELRETFDED----GETIADRLWS 612 L EDE E I++N++ +QSKQ L +LRE D+D G I + +S Sbjct: 446 LNYKEDEYFENIIQNLKFSQSKQ--LKKLREKVDKDEWITGAAIVNAFYS 493 >4CTH-A nrPDB Length = 709 Score = 35.1 bits (79), Expect = 0.100, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%) Query: 567 LGVYEDELVEYILENIRVNQSKQALLNELRETFDED 602 L EDE E I++N++ +QSKQ L +LRE D+D Sbjct: 459 LNYKEDEYFENIIQNLKFSQSKQ--LKKLREKVDKD 492 >4K92-A nrPDB Length = 273 Score = 33.2 bits (74), Expect = 0.34, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 9/88 (10%) Query: 325 NHSGAKGSANTEEEDTNMEDEDEEDDTEDDLALEKRKEERDLEESNRRYEDMLHQLHSNT 384 +H G+K SA +E DE++ DD+ + + RDLEES + ++L + Sbjct: 2 SHMGSKSSA--AKEGAGAVDEEDFIKAFDDVPVVQIYSSRDLEESINKIREILSDDKHDW 59 Query: 385 EPKI---KSIRADIMSA----ENYEEHL 405 E ++ K IR+ +++ +N+ +HL Sbjct: 60 EQRVNALKKIRSLLLAGAAEYDNFFQHL 87 >2CJK-A nrPDB Length = 167 Score = 33.2 bits (74), Expect = 0.37, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 15/87 (17%) Query: 218 EDRTGTI------PSVKPEKASEFYSVFKNIEDQTDERNSKKEQLDDSSTQYKVDTNTLS 271 +D+TG I P V+P++ EF+S + I D + LD + Q + Sbjct: 84 QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIID-------AQLMLDKDTGQSRGFGFVTY 136 Query: 272 DLPSDALDQLCKD-IIEFRTKVVSIEK 297 D +DA+D++C++ I+F+ + + I++ Sbjct: 137 D-SADAVDRVCQNKFIDFKDRKIEIKR 162 >5VY8-A nrPDB Length = 908 Score = 32.8 bits (73), Expect = 0.44, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 24/179 (13%) Query: 344 DEDEEDDTEDDLALEKRKE---ERDLEESNRRYEDMLHQLHSNTEPKIKSIRADIMSAEN 400 DED + T+D L L ++KE + +LE +RY + H T+ K K + EN Sbjct: 434 DEDADSTTKDRLKLARQKEASLQEELEPLRQRYNEEKHGHEELTQAKKK-----LDELEN 488 Query: 401 YEEHLEKNRSLYLKELLHLANDVHY----DHHRSFKEQEERRDEEDRAKNGNAKELAPIQ 456 E+ A D+ Y D + ++ E++ EE+R N+ IQ Sbjct: 489 KALDAERRYD------TATAADLRYFAIPDIKKQIEKLEDQVAEEERRAGANSM----IQ 538 Query: 457 -LSDGKAISAGKAAAITLP-EGTVKSENYNADKNVSESSEHVKIKFDFKKAIDHSVESS 513 + D IS A +P + +SEN + S V + D KA+ ++V S Sbjct: 539 NVVDSDTISETAARLTGIPVKKLSESENEKLIHMERDLSSEVVGQMDAIKAVSNAVRLS 597 >4BN9-A nrPDB Length = 201 Score = 32.8 bits (73), Expect = 0.46, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 1/93 (1%) Query: 230 EKASEFYSVFKNIEDQTDERNSKKEQLDDSSTQYKVDTNTLSDLPSDALDQLCKDIIEFR 289 E Y++ +N++D+ + KE + S T + T L L DA D+L +I+ Sbjct: 7 ENRRTIYALGRNVQDEEKVIETIKEAVRFSPTAFNSQTGRLLILTGDAQDKLWDEIVAPE 66 Query: 290 TKVVSIEKEKKMKSTYEESRRQRHQMQKVFDQI 322 K ++E + +S ++ +R + + F I Sbjct: 67 LK-AAMEAQGVPESAWDNTRAKLDGFKAAFGTI 98 >2CFV-A nrPDB Length = 316 Score = 32.4 bits (72), Expect = 0.61, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 456 QLSDGKAISAGKAAAITLPEGTVKSENYNADKNVSESSEHVKIKFDFKKAIDHSVESSSE 515 Q D I+ + I LPE T++ KN+ S H +F F A DH V +++ Sbjct: 162 QAQDYGDITVAMTSEIVLPEWTIRDFTV---KNIQTSESHPLRQFHFTSAPDHGVPDTTD 218 >4OEU-A nrPDB Length = 494 Score = 32.0 bits (71), Expect = 0.83, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%) Query: 338 EDTNMEDED----EEDDTEDDLALEKRKEERDLEESNRRYEDMLHQLHSN 383 +D+ + DE D + D+AL+K + +LEE + Y+D + L+ N Sbjct: 402 QDSALNDEGWNFGHYHDKKVDIALQKARNTSNLEERKKYYKDFIDALYEN 451 >6MAT-A nrPDB Length = 813 Score = 32.0 bits (71), Expect = 0.86, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 9/89 (10%) Query: 300 KMKSTYEESRRQRHQMQKVFDQIRKNHSGAKGSANTEEEDT---------NMEDEDEEDD 350 + + T E +R R + V+D I++++S ED+ +EE D Sbjct: 23 EQQGTDENGKRPRLTVDYVYDTIKRSNSSLARQKKRMLEDSIERVLAVRKEQAKAEEETD 82 Query: 351 TEDDLALEKRKEERDLEESNRRYEDMLHQ 379 ++D + ++R+ ER +R ++L++ Sbjct: 83 SDDLIEAQERERERQKAAQAQRDANLLNR 111 >6H4J-A nrPDB Length = 552 Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 7/68 (10%) Query: 508 HSVESSSEDEGYRESELPPTKPSERSAAEDR----LPFTADELNIRLTNLKESRYVDELV 563 ++ S++E +G SELP T PS +A R PFT + L R++ E Sbjct: 331 QTLPSTTEQQGALSSELPSTSPSSVAAISSRSVIHKPFTQSRIPPDLPMHPAPRHITE-- 388 Query: 564 REFLGVYE 571 E L V E Sbjct: 389 -EELSVLE 395 >5O71-A nrPDB Length = 716 Score = 30.9 bits (68), Expect = 1.6, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 7/68 (10%) Query: 508 HSVESSSEDEGYRESELPPTKPSERSAAEDRL----PFTADELNIRLTNLKESRYVDELV 563 ++ S++E +G SELP T PS +A R PFT + L R++ E Sbjct: 487 QTLPSTTEQQGALSSELPSTSPSSVAAISSRSVIHKPFTQSRIPPDLPMHPAPRHITE-- 544 Query: 564 REFLGVYE 571 E L V E Sbjct: 545 -EELSVLE 551 >6O9L-1 nrPDB Length = 548 Score = 30.1 bits (66), Expect = 2.7, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 9/79 (11%) Query: 326 HSGAKGSANTEEEDTNMEDEDEEDDTEDDLALE-KRKEERDLEESNRRYED--MLHQLHS 382 H+G + + E T +++ D D L + KRK ++LEE NR ++ +L QL+ Sbjct: 70 HAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQEDPVLFQLYK 129 Query: 383 NTEPKIKSIRADIMSAENY 401 + + + ++SAE + Sbjct: 130 DL------VVSQVISAEEF 142 >6NMI-C nrPDB Length = 548 Score = 30.1 bits (66), Expect = 2.7, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 9/79 (11%) Query: 326 HSGAKGSANTEEEDTNMEDEDEEDDTEDDLALE-KRKEERDLEESNRRYED--MLHQLHS 382 H+G + + E T +++ D D L + KRK ++LEE NR ++ +L QL+ Sbjct: 70 HAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQEDPVLFQLYK 129 Query: 383 NTEPKIKSIRADIMSAENY 401 + + + ++SAE + Sbjct: 130 DL------VVSQVISAEEF 142 >4MMP-A nrPDB Length = 308 Score = 30.1 bits (66), Expect = 2.9, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 23/155 (14%) Query: 122 VSSSFSRGQIESLLDHCLNLALTETQSNSALKVEAWSSFSSFLDTQDIFIRFSKVDEDEA 181 + + F +G ++ + D LN+ + N + + + +S D + + +R + A Sbjct: 99 LDTKFGQGLLKKI-DKELNVQVLSVAYNGTRQTTSNRAINSIEDMKGLKLRVPNAATNLA 157 Query: 182 FVNTLNYCKALFAFIRKLHEDFKIELHLDLNTKEYVEDRTGTIPSVKPEKASEFYSVFKN 241 + + AF E++L L T V+ + +P+++ +K FY V K Sbjct: 158 YAKYVGAAPTPMAFS---------EVYLALQTNS-VDGQENPLPTIQAQK---FYEVQKY 204 Query: 242 IEDQTDERNSKKEQLDDSSTQYKVDTNTLSDLPSD 276 + N +QL Y + +TL+DLP D Sbjct: 205 LALTNHILN---DQL------YLISNDTLADLPED 230 >2P22-C nrPDB Length = 192 Score = 29.7 bits (65), Expect = 4.3, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 5/60 (8%) Query: 233 SEFYSVFKNIEDQTD-ERNSKKEQLDDSSTQYKVDTNTLSDLPSDALDQLCKDIIEFRTK 291 SEF + +I + E+N+KK LD+ S+Q ++T T S +D LDQ K+ ++ RT+ Sbjct: 118 SEFSKKYGDIALKKKLEQNTKK--LDEESSQ--LETTTRSIDSADDLDQFIKNYLDIRTQ 173 >5OQL-B nrPDB Length = 907 Score = 29.3 bits (64), Expect = 4.5, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 16/118 (13%) Query: 298 EKKMKSTYEESRRQRHQMQKVF-----DQIRKNHSGAKGSANTEEEDTNMEDEDEEDDTE 352 E KM Y + + H+ + +F D+ R H G ++++ ED E+D Sbjct: 131 EDKMIERYTQEALRAHKKKGMFDLEDDDEARLTH---MGKPLFDDDEAPKEDFSEDDLPS 187 Query: 353 DDLALEKRKEERDLEESNRRYEDMLHQLHSNT-EPKIKSIRADIMSAENYEEHLEKNR 409 D + R E R L+ +R + + L +P+ K R +I YEE + K++ Sbjct: 188 GDESDTTRAERRALKR--QRLAEAMEGLEDEAGQPERKKTRKEI-----YEEIIAKSK 238 >3VKK-A nrPDB Length = 469 Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Query: 498 IKFDFKKAIDHSVESSSEDEGYRESELPPTKPSERSAAEDRLPFTADELNIRLTNLKESR 557 I D+ + + + S S+ +GY S LP E+ + TAD ++ + + Sbjct: 260 IDGDYPEVVKSQIASMSQKQGYPSSRLPEFTEEEKKMIKG----TADFFAVQYYTTRLIK 315 Query: 558 YVDELVREFLGVYEDELVEY 577 Y + E LG+ +D +E+ Sbjct: 316 YQENKKGE-LGILQDAEIEF 334 >3RQF-A nrPDB Length = 214 Score = 28.6 bits (62), Expect = 8.5, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 16/118 (13%) Query: 349 DDTEDDLALEKRKEERDLEESNRRYEDMLHQLHSNTEPKIKSIRA--DIMSAENYEEHLE 406 DD E+ + E +DL E R + +L ++ +++ ++ DI SA Sbjct: 88 DDVEEYMIERPEPEFQDLNEKARALKQILSKIPDEINDRVRFLQTIKDIASA-------- 139 Query: 407 KNRSLYLKELLHLANDVHYDHHRSFKEQEERRDEEDRAKNGNAKELAPIQLSDGKAIS 464 +KELL N+V + + E + +E + + + DGKAI+ Sbjct: 140 ------IKELLDTVNNVFKKYQYQNRRALEHQKKEFVKYSKSFSDTLKTYFKDGKAIN 191 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.309 0.127 0.343 Lambda K H 0.267 0.0396 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,939,681 Number of Sequences: 36641 Number of extensions: 933584 Number of successful extensions: 4210 Number of sequences better than 10.0: 84 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 157 Number of HSP's that attempted gapping in prelim test: 3441 Number of HSP's gapped (non-prelim): 538 length of query: 620 length of database: 10,336,785 effective HSP length: 103 effective length of query: 517 effective length of database: 6,562,762 effective search space: 3392947954 effective search space used: 3392947954 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 62 (28.5 bits)