BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P53193 (184 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 3UO2-A nrPDB 363 e-101 3BVO-A nrPDB 66 8e-12 4IT5-A nrPDB 64 3e-11 1FPO-A nrPDB 55 1e-08 4J80-A nrPDB 36 0.011 5A4J-A nrPDB 33 0.089 3LZ8-A nrPDB 33 0.097 2XHS-A nrPDB 32 0.21 6N3Q-D nrPDB 29 1.0 6G4S-u nrPDB 27 4.9 5TJR-A nrPDB 27 5.0 >3UO2-A nrPDB Length = 175 Score = 363 bits (931), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/175 (100%), Positives = 175/175 (100%) Query: 10 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTL 69 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTL Sbjct: 1 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTL 60 Query: 70 KDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAGVKLLEK 129 KDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAGVKLLEK Sbjct: 61 KDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAGVKLLEK 120 Query: 130 QNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAFKDWAPGKQLEMNH 184 QNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAFKDWAPGKQLEMNH Sbjct: 121 QNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAFKDWAPGKQLEMNH 175 >3BVO-A nrPDB Length = 207 Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 85/152 (55%), Gaps = 13/152 (8%) Query: 29 WTIDQSRLRKEYRQLQAQHHPDMAQQG-------SEQSSTL-NQAYHTLKDPLRRSQYML 80 + +D ++L+ Y+QLQ HPD Q SE+ STL N AY TL PL R Y+L Sbjct: 55 FRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL 114 Query: 81 KLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEA 140 K L I++ E+T E+ D Q L+++++I+++L++ + EA +K +E K + ++ Sbjct: 115 K-LHGIEIP-ERTDYEM---DRQFLIEIMEINEKLAEAESEAAMKEIESIVKAKQKEFTD 169 Query: 141 QLGQCYNDKDYAAAVKLTVELKYWYNLAKAFK 172 + + D+ A ++ +++Y+ N+ + K Sbjct: 170 NVSSAFEQDDFEEAKEILTKMRYFSNIEEKIK 201 >4IT5-A nrPDB Length = 174 Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 20/112 (17%) Query: 13 TFYELFPKTFPKKLPI-WTIDQSRLRKEYRQLQAQHHPDMAQQGSE--------QSSTLN 63 ++ELF LPI + +D S L ++R LQ + HPD SE Q++ +N Sbjct: 5 NYFELF------GLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQIN 58 Query: 64 QAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDEL 115 AY TLKDPLRR++Y+L L+ I++ EQ T DP L++ +++ +EL Sbjct: 59 DAYQTLKDPLRRAEYLLS-LQGIEMNAEQQ----TLQDPMFLMEQMELREEL 105 >1FPO-A nrPDB Length = 171 Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 16/115 (13%) Query: 29 WTIDQSRLRKEYRQLQAQHHPDMAQQGSE--------QSSTLNQAYHTLKDPLRRSQYML 80 + +D L ++ LQ Q+HPD GS+ QS+T+NQA+ TL+ PL R++Y+L Sbjct: 13 YQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLL 72 Query: 81 KLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIH---DELSQMDDEAGVKLLEKQNK 132 L DL EQ T D L++ L++ DE+ Q DEA ++ K+ K Sbjct: 73 S-LHGFDLASEQH----TVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVK 122 >4J80-A nrPDB Length = 284 Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust. Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 2/48 (4%) Query: 33 QSRLRKEYRQLQAQHHPDM--AQQGSEQSSTLNQAYHTLKDPLRRSQY 78 Q +++ Y++L Q+HPD+ + + E+ +N+AY + DP +R Y Sbjct: 19 QEEIKRAYKRLARQYHPDVNKSPEAEEKFKEINEAYAVMSDPEKRRIY 66 >5A4J-A nrPDB Length = 559 Score = 32.7 bits (73), Expect = 0.089, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 118 MDDEAGVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAFKD 173 M ++ +++ ++ E I+D+ ++G C +D +Y K ++ YNL K F+D Sbjct: 1 MSYKSDIEIAQEAKIEHIKDVATKIGLCEDDIEYYGKYKAKID----YNLLKRFED 52 >3LZ8-A nrPDB Length = 329 Score = 32.7 bits (73), Expect = 0.097, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%) Query: 30 TIDQSRLRKEYRQLQAQHHPDMAQQGSEQS--STLNQAYHTLKDPLRRSQY 78 T D ++ YR+L ++HPD++++ ++ L +A+ LKD RR++Y Sbjct: 39 TDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEY 89 >2XHS-A nrPDB Length = 245 Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 11/63 (17%) Query: 67 HTLKDPLRRSQYMLKLLRNID----------LTQEQTSNEVTTSDPQLLLKVLDIHDELS 116 H L+DPLR S + + +++ID L Q+QT N+V +L+ KVLD + S Sbjct: 3 HMLEDPLRVSPMIREFVQSIDDREWQTQLFALLQKQTYNQVEVDLFELMCKVLD-QNLFS 61 Query: 117 QMD 119 Q+D Sbjct: 62 QVD 64 >6N3Q-D nrPDB Length = 663 Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust. Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 9/53 (16%) Query: 36 LRKEYRQLQAQHHPDMAQQG---------SEQSSTLNQAYHTLKDPLRRSQYM 79 ++ YR+L + HPD +G E + +AY +L D L R Y+ Sbjct: 141 IKSAYRKLSVKFHPDKLAKGLTPDEKSVMEETYVQITKAYESLTDELVRQNYL 193 >6G4S-u nrPDB Length = 804 Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust. Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 11/78 (14%) Query: 111 IHDEL--SQMDDEAGVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLA 168 +HD+L ++D+EA K+LEK +ER++++ + +D AA ++ Y Sbjct: 454 VHDDLYDKKVDEEAEAKMLEKYKQERLEEMFPD--EVDTPRDVAARIRFQK-----YRGL 506 Query: 169 KAFK--DWAPGKQLEMNH 184 K+F+ W P + L ++ Sbjct: 507 KSFRTSPWDPKENLPQDY 524 >5TJR-A nrPDB Length = 531 Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust. Identities = 14/62 (22%), Positives = 33/62 (53%) Query: 114 ELSQMDDEAGVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAFKD 173 +L + ++E VKL+ +++ + I+D +L + + +YA A ++ +Y N+ Sbjct: 106 QLLEANEERIVKLISEEHGKTIEDAAGELKRGIENVEYATAAPEILKGEYSRNVGPNIDA 165 Query: 174 WA 175 W+ Sbjct: 166 WS 167 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 3UO2-A nrPDB 251 1e-67 3BVO-A nrPDB 173 6e-44 4IT5-A nrPDB 118 1e-27 1FPO-A nrPDB 112 1e-25 Sequences not found previously or not previously below threshold: 4J80-A nrPDB 40 6e-04 3LZ8-A nrPDB 37 0.004 6N3Q-D nrPDB 36 0.012 4FCY-A nrPDB 31 0.35 4ZV2-A nrPDB 31 0.37 5MMJ-m nrPDB 30 0.60 2L6L-A nrPDB 29 0.96 6ERI-BM nrPDB 29 1.5 3X0U-A nrPDB 29 1.7 4WB7-A nrPDB 29 1.8 5SUM-A nrPDB 28 2.5 1GRJ-A nrPDB 28 2.6 2PX0-A nrPDB 27 5.8 6HXJ-A nrPDB 27 5.9 1QSA-A nrPDB 27 6.7 5UI8-M nrPDB 26 8.4 5NSR-M nrPDB 26 8.4 2Z2R-A nrPDB 26 9.0 6GH6-M nrPDB 26 9.9 >3UO2-A nrPDB Length = 175 Score = 251 bits (641), Expect = 1e-67, Method: Composition-based stats. Identities = 175/175 (100%), Positives = 175/175 (100%) Query: 10 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTL 69 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTL Sbjct: 1 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTL 60 Query: 70 KDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAGVKLLEK 129 KDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAGVKLLEK Sbjct: 61 KDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAGVKLLEK 120 Query: 130 QNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAFKDWAPGKQLEMNH 184 QNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAFKDWAPGKQLEMNH Sbjct: 121 QNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAFKDWAPGKQLEMNH 175 >3BVO-A nrPDB Length = 207 Score = 173 bits (437), Expect = 6e-44, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 85/152 (55%), Gaps = 13/152 (8%) Query: 29 WTIDQSRLRKEYRQLQAQHHPDMAQQGS-------EQSSTL-NQAYHTLKDPLRRSQYML 80 + +D ++L+ Y+QLQ HPD Q S E+ STL N AY TL PL R Y+L Sbjct: 55 FRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL 114 Query: 81 KLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEA 140 K L I++ E+T E+ D Q L+++++I+++L++ + EA +K +E K + ++ Sbjct: 115 K-LHGIEIP-ERTDYEM---DRQFLIEIMEINEKLAEAESEAAMKEIESIVKAKQKEFTD 169 Query: 141 QLGQCYNDKDYAAAVKLTVELKYWYNLAKAFK 172 + + D+ A ++ +++Y+ N+ + K Sbjct: 170 NVSSAFEQDDFEEAKEILTKMRYFSNIEEKIK 201 >4IT5-A nrPDB Length = 174 Score = 118 bits (296), Expect = 1e-27, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 83/173 (47%), Gaps = 24/173 (13%) Query: 13 TFYELFPKTFPKKLPI-WTIDQSRLRKEYRQLQAQHHPDMAQQGSE--------QSSTLN 63 ++ELF LPI + +D S L ++R LQ + HPD SE Q++ +N Sbjct: 5 NYFELF------GLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQIN 58 Query: 64 QAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQ----MD 119 AY TLKDPLRR++Y+L L+ I++ EQ T DP L++ +++ +EL D Sbjct: 59 DAYQTLKDPLRRAEYLLS-LQGIEMNAEQQ----TLQDPMFLMEQMELREELESVTACAD 113 Query: 120 DEAGVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAFK 172 EA + + + + AQL ++ AA +LK+ L + Sbjct: 114 PEAALVAFDTKVTAMQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLKNEVE 166 >1FPO-A nrPDB Length = 171 Score = 112 bits (279), Expect = 1e-25, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 23/167 (13%) Query: 13 TFYELFPKTFPKKLPI-WTIDQSRLRKEYRQLQAQHHPDMAQQGS--------EQSSTLN 63 ++ LF LP + +D L ++ LQ Q+HPD GS +QS+T+N Sbjct: 2 DYFTLF------GLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATIN 55 Query: 64 QAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDEL---SQMDD 120 QA+ TL+ PL R++Y+L L DL EQ T D L++ L++ +EL Q D Sbjct: 56 QAWQTLRHPLMRAEYLLS-LHGFDLASEQH----TVRDTAFLMEQLELREELDEIEQAKD 110 Query: 121 EAGVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNL 167 EA ++ K+ K+ + + +++ + AA +L++ L Sbjct: 111 EARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKL 157 >4J80-A nrPDB Length = 284 Score = 39.8 bits (91), Expect = 6e-04, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Query: 33 QSRLRKEYRQLQAQHHPD--MAQQGSEQSSTLNQAYHTLKDPLRRSQY 78 Q +++ Y++L Q+HPD + + E+ +N+AY + DP +R Y Sbjct: 19 QEEIKRAYKRLARQYHPDVNKSPEAEEKFKEINEAYAVMSDPEKRRIY 66 >3LZ8-A nrPDB Length = 329 Score = 37.1 bits (84), Expect = 0.004, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 2/49 (4%) Query: 32 DQSRLRKEYRQLQAQHHPDMAQQGSEQS--STLNQAYHTLKDPLRRSQY 78 D ++ YR+L ++HPD++++ ++ L +A+ LKD RR++Y Sbjct: 41 DLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEY 89 >6N3Q-D nrPDB Length = 663 Score = 35.5 bits (80), Expect = 0.012, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 17/71 (23%) Query: 36 LRKEYRQLQAQHHPDMAQQG---------SEQSSTLNQAYHTLKDPLRRSQYM------- 79 ++ YR+L + HPD +G E + +AY +L D L R Y+ Sbjct: 141 IKSAYRKLSVKFHPDKLAKGLTPDEKSVMEETYVQITKAYESLTDELVRQNYLKYGHPDG 200 Query: 80 -LKLLRNIDLT 89 I L Sbjct: 201 PQSTSHGIALP 211 >4FCY-A nrPDB Length = 529 Score = 30.9 bits (68), Expect = 0.35, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 44/125 (35%), Gaps = 13/125 (10%) Query: 29 WTIDQSRLRKEYRQLQAQHHPDMAQ----------QGSEQSSTLNQAYHTLKDPLRRSQ- 77 + + S LR +Y Q+Q PD A + +S A+ L R + Sbjct: 62 YQVSASTLRDKYYQVQKFAKPDWAAALVDGRGASRRNVHKSEFDEDAWQFLIADYLRPEK 121 Query: 78 -YMLKLLRNIDLTQEQTSNEVTTSDPQL-LLKVLDIHDELSQMDDEAGVKLLEKQNKERI 135 K ++L + + + ++ LD ++ + E + L + + Sbjct: 122 PAFRKCYERLELAAREHGWSIPSRATAFRRIQQLDEAMVVACREGEHALMHLIPAQQRTV 181 Query: 136 QDIEA 140 + ++A Sbjct: 182 EHLDA 186 >4ZV2-A nrPDB Length = 233 Score = 30.9 bits (68), Expect = 0.37, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 9/97 (9%) Query: 82 LLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEAQ 141 ++ + +T+E+ +V SDP + + +K LE + + + Q Sbjct: 73 VIAGMTITEERKK-QVDFSDPYF-----EAGQAIVVKKGNDSIKSLEDL---KGKKVGVQ 123 Query: 142 LGQCYNDKDYAAAVKLTVELKYWYNLAKAFKDWAPGK 178 LG A V++K + N ++AF++ G+ Sbjct: 124 LGSTSEQHVKKVAKDAGVKVKKFDNFSEAFQELKSGR 160 >5MMJ-m nrPDB Length = 172 Score = 30.1 bits (66), Expect = 0.60, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 20/83 (24%) Query: 74 RRSQYMLKLLRNI----------DLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAG 123 +R +Y L+ + I DLT E + + D ++L + DE+++ E Sbjct: 59 KRVEYSLQYIHGIGRSRARQILCDLTLENKLTKELSED-----ELLQVRDEVTKYMIEGD 113 Query: 124 VKLLEKQNKERIQDIEAQLGQCY 146 ++ R+++I QCY Sbjct: 114 LRRFNAIAIRRLKEI-----QCY 131 >2L6L-A nrPDB Length = 155 Score = 29.4 bits (64), Expect = 0.96, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 16/89 (17%) Query: 34 SRLRKEYRQLQAQHHPDMAQQG---------SEQSSTLNQAYHTLKDPLRRSQYMLKLLR 84 S L+++Y++L +HPD ++ ++QA+ L + + +Y L+ Sbjct: 25 SDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR-- 82 Query: 85 NIDLTQEQTSNEVTTSDPQLLLKVLDIHD 113 E V D Q+ L+ + ++ Sbjct: 83 -----CEDDLRNVGPVDAQVYLEEMSWNE 106 >6ERI-BM nrPDB Length = 111 Score = 28.6 bits (62), Expect = 1.5, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 20/83 (24%) Query: 74 RRSQYMLKLLRNI----------DLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAG 123 +R +Y L+ + I DLT E + + D ++L + DE+++ E Sbjct: 12 KRVEYSLQYIHGIGRSRARQILCDLTLENKLTKELSED-----ELLQVRDEVTKYMIEGD 66 Query: 124 VKLLEKQNKERIQDIEAQLGQCY 146 ++ R+++I QCY Sbjct: 67 LRRFNAIAIRRLKEI-----QCY 84 >3X0U-A nrPDB Length = 446 Score = 28.6 bits (62), Expect = 1.7, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Query: 110 DIHDELSQMDDEAGVKLLEKQNKERIQDIEAQ---LGQCYNDKDYAAAVKLTVEL--KYW 164 + D + + DE+ + + +I++ + + + + YAAA + L Y Sbjct: 78 QLRDRIQDLVDESIIDAINGILDSKIKETRDKIQDINETIENFGYAAAKDDYIGLVTHYL 137 Query: 165 YNLAKAFK 172 L + FK Sbjct: 138 IGLEENFK 145 >4WB7-A nrPDB Length = 405 Score = 28.6 bits (62), Expect = 1.8, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Query: 36 LRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQY 78 +++ YR+ ++HPD ++ E+ + +AY L DP +R + Sbjct: 19 IKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIF 63 >5SUM-A nrPDB Length = 468 Score = 27.8 bits (60), Expect = 2.5, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 89 TQEQTSNEVTTSD--PQLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEAQLGQCY 146 + ++ NE + SD P+ + +I +S + D+A ++ L ++ +R + ++ + C Sbjct: 91 PKGESKNEKSLSDDLPKFDISEFEITSSVSDLFDDAKLESLSSKSVKRTKLVDGFVTLCP 150 Query: 147 NDKD 150 KD Sbjct: 151 IKKD 154 >1GRJ-A nrPDB Length = 158 Score = 27.8 bits (60), Expect = 2.6, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 83 LRNIDLTQEQTSNEVTTSDPQLLLKVLDIHD--ELSQMDDEAGVKLLEKQNKERIQDIEA 140 LR + +E+ + P+++ + + + +L + + + + + RI+DIEA Sbjct: 8 LRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEA 67 Query: 141 QLGQC 145 +L Sbjct: 68 KLSNA 72 >2PX0-A nrPDB Length = 296 Score = 26.7 bits (57), Expect = 5.8, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 57/151 (37%), Gaps = 2/151 (1%) Query: 12 STFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKD 71 S + + P+ K + + + L+ + G + + + + L D Sbjct: 32 SAYQSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAGGLTEENVVGKLQEILCD 91 Query: 72 PLRRSQYMLKLLRN--IDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAGVKLLEK 129 L + + + + I L + + TT + +L+ H +++ + + + Sbjct: 92 MLPSADKWQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVE 151 Query: 130 QNKERIQDIEAQLGQCYNDKDYAAAVKLTVE 160 Q K + ++A L CY +++ A +L E Sbjct: 152 QLKTYAELLQAPLEVCYTKEEFQQAKELFSE 182 >6HXJ-A nrPDB Length = 398 Score = 26.7 bits (57), Expect = 5.9, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 41/82 (50%), Gaps = 8/82 (9%) Query: 76 SQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAGVKLLEKQNKERI 135 ++ ++ +D+ N + Q+ L ++L+++ +AG E + ER+ Sbjct: 116 AELLISKHGGVDI----EDNWDSVRRIQIELDENPTIEQLTELAKDAG---FEGEIAERV 168 Query: 136 QDIEAQLGQCYNDKDYAAAVKL 157 I ++L C++++D A ++++ Sbjct: 169 GKICSRLILCFDNED-AQSIEI 189 >1QSA-A nrPDB Length = 618 Score = 26.7 bits (57), Expect = 6.7, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 38/87 (43%), Gaps = 9/87 (10%) Query: 107 KVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEAQLGQ-CYNDKDYAAAVKLTVELKYWY 165 ++ + + + D K + + +AQL + +N++ + +V+ T+ K W Sbjct: 384 EMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWD 443 Query: 166 NLAKA--------FKDWAPGKQLEMNH 184 +L + FK + GK++ ++ Sbjct: 444 HLEERFPLAYNDLFKRYTSGKEIPQSY 470 >5UI8-M nrPDB Length = 477 Score = 26.3 bits (56), Expect = 8.4, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 5/86 (5%) Query: 57 EQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELS 116 +Q L + P + L L ++L QE + LL+ D+HDE+ Sbjct: 2 KQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNP----LLEQTDLHDEVE 57 Query: 117 QMDDEAGVKLLEKQNKERIQDIEAQL 142 + E + L+ + +++ +L Sbjct: 58 AKEVEDR-ESLDTVDALEQKEMPDEL 82 >5NSR-M nrPDB Length = 573 Score = 26.3 bits (56), Expect = 8.4, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 5/86 (5%) Query: 57 EQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELS 116 +Q L + P + L L ++L QE + LL+ D+HDE+ Sbjct: 2 KQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNP----LLEQTDLHDEVE 57 Query: 117 QMDDEAGVKLLEKQNKERIQDIEAQL 142 + E + L+ + +++ +L Sbjct: 58 AKEVEDR-ESLDTVDALEQKEMPDEL 82 >2Z2R-A nrPDB Length = 292 Score = 26.3 bits (56), Expect = 9.0, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 4 YLVQRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLN 63 + V++ F +EL K K PIW + Q Q P+ +G E +LN Sbjct: 34 FEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISG-----QEQPKPEQIAKGQEIVESLN 88 Query: 64 Q 64 + Sbjct: 89 E 89 >6GH6-M nrPDB Length = 497 Score = 25.9 bits (55), Expect = 9.9, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 5/86 (5%) Query: 57 EQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELS 116 +Q L + P + L L ++L QE + LL+ D+HDE+ Sbjct: 22 KQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNP----LLEQTDLHDEVE 77 Query: 117 QMDDEAGVKLLEKQNKERIQDIEAQL 142 + E + L+ + +++ +L Sbjct: 78 AKEVEDR-ESLDTVDALEQKEMPDEL 102 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.308 0.126 0.317 Lambda K H 0.267 0.0387 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,129,765 Number of Sequences: 36641 Number of extensions: 198753 Number of successful extensions: 868 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 47 Number of HSP's that attempted gapping in prelim test: 829 Number of HSP's gapped (non-prelim): 67 length of query: 184 length of database: 10,336,785 effective HSP length: 91 effective length of query: 93 effective length of database: 7,002,454 effective search space: 651228222 effective search space used: 651228222 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 56 (26.3 bits)