BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P53184 (216 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 3V8E-A nrPDB 447 e-126 2WT9-A nrPDB 111 3e-25 3PL1-A nrPDB 89 1e-18 1J2R-A nrPDB 33 0.12 3GYZ-A nrPDB 30 1.0 5FA2-A nrPDB 29 1.6 3Q9T-A nrPDB 28 2.1 6MZJ-A nrPDB 28 3.0 2Z00-A nrPDB 28 3.0 5TE7-G nrPDB 27 4.9 6CK9-G nrPDB 27 5.2 4R4H-A nrPDB 27 7.3 5IC5-A nrPDB 27 7.7 >3V8E-A nrPDB Length = 216 Score = 447 bits (1151), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/216 (100%), Positives = 216/216 (100%) Query: 1 MKTLIVVDMQNDFISPLGSLTVPKGEELINPISDLMQDADRDWHRIVVTRDWHPSRHISF 60 MKTLIVVDMQNDFISPLGSLTVPKGEELINPISDLMQDADRDWHRIVVTRDWHPSRHISF Sbjct: 1 MKTLIVVDMQNDFISPLGSLTVPKGEELINPISDLMQDADRDWHRIVVTRDWHPSRHISF 60 Query: 61 AKNHKDKEPYSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQIMDQVVTKHIKIV 120 AKNHKDKEPYSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQIMDQVVTKHIKIV Sbjct: 61 AKNHKDKEPYSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQIMDQVVTKHIKIV 120 Query: 121 DKGFLTDREYYSAFHDIWNFHKTDMNKYLEKHHTDEVYIVGVALEYCVKATAISAAELGY 180 DKGFLTDREYYSAFHDIWNFHKTDMNKYLEKHHTDEVYIVGVALEYCVKATAISAAELGY Sbjct: 121 DKGFLTDREYYSAFHDIWNFHKTDMNKYLEKHHTDEVYIVGVALEYCVKATAISAAELGY 180 Query: 181 KTTVLLDYTRPISDDPEVINKVKEELKAHNINVVDK 216 KTTVLLDYTRPISDDPEVINKVKEELKAHNINVVDK Sbjct: 181 KTTVLLDYTRPISDDPEVINKVKEELKAHNINVVDK 216 >2WT9-A nrPDB Length = 235 Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 67/191 (35%), Positives = 105/191 (54%), Gaps = 16/191 (8%) Query: 2 KTLIVVDMQNDFISPLGSLTVPKGEELINPISDLMQDADRDWHRIVVTRDWHPSRHISFA 61 L+VVD+QN F +P G+L V + +I I+ L + +V+T+DWHP HISFA Sbjct: 31 SALVVVDVQNGF-TPGGNLAVADADTIIPTINQLA----GCFENVVLTQDWHPDNHISFA 85 Query: 62 KNHKDKEPYSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQIMDQVVTKHIKIVD 121 NH K+P+ T D +Q +LWP HC++ T ++ + + T + I+ Sbjct: 86 ANHPGKQPFETIEL------DYGSQ--VLWPKHCIQGTHDAEFHPDL--NIPTAQL-IIR 134 Query: 122 KGFLTDREYYSAFHDIWNFHKTDMNKYLEKHHTDEVYIVGVALEYCVKATAISAAELGYK 181 KGF + YSAF + + T + YL++ D VY+VG+A ++CV TA+ A + G+K Sbjct: 135 KGFHAHIDSYSAFMEADHTTMTGLTGYLKERGIDTVYVVGIATDFCVAWTALDAVKQGFK 194 Query: 182 TTVLLDYTRPI 192 T V+ D + I Sbjct: 195 TLVIEDACKGI 205 >3PL1-A nrPDB Length = 186 Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 99/216 (45%), Gaps = 35/216 (16%) Query: 1 MKTLIVVDMQNDFISPLGSLTVPKGEELINPISDLMQDADRDWHRIVVTRDWH--PSRHI 58 M+ LI+VD+QNDF GSL V G L ISD + +A D+H +V T+D+H P H Sbjct: 1 MRALIIVDVQNDFCEG-GSLAVTGGAALARAISDYLAEA-ADYHHVVATKDFHIDPGDHF 58 Query: 59 SFAKNHKDKEPYSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQIMDQVVTKHIK 118 S ++ WP HCV T G+ + + Sbjct: 59 SGTPDYSSS-----------------------WPPHCVSGTPGADFHPSLDTSAIEA--- 92 Query: 119 IVDKGFLTDREYYSAFHDIWNFHKTDMNKYLEKHHTDEVYIVGVALEYCVKATAISAAEL 178 + KG T YS F + + + T + +L + DEV +VG+A ++CV+ TA A Sbjct: 93 VFYKGAYTGA--YSGFEGV-DENGTPLLNWLRQRGVDEVDVVGIATDHCVRQTAEDAVRN 149 Query: 179 GYKTTVLLDYTRPISDDPEVINKVKEELKAHNINVV 214 G T VL+D T +S D V EE++ ++ +V Sbjct: 150 GLATRVLVDLTAGVSADTTV--AALEEMRTASVELV 183 >1J2R-A nrPDB Length = 199 Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 140 FHKTDMNKYLEKHHTDEVYIVGVALEYCVKATAISAAELGYKTTVLLDYTRPISDD 195 F+ TD+ L + D + + G++ V++TA +A ELG+ + D S + Sbjct: 118 FYGTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAE 173 >3GYZ-A nrPDB Length = 151 Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 18/106 (16%) Query: 106 DQIMDQVVTKHIKIVDKGFLTDREYYSAFHDIWNFHKTDMNKYLEKHHTDEVYIVGVALE 165 D +MD + + +KG + + E + F I++F+ D YI+G+A Sbjct: 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD-------------YIMGLAAI 79 Query: 166 YCVKATAISAAELGYKTTVLL---DYTRPISDDPEVINKVKEELKA 208 Y +K AA+L Y L DYT P+ + ++K LKA Sbjct: 80 YQIKEQFQQAADL-YAVAFALGKNDYT-PVFHTGQCQLRLKAPLKA 123 >5FA2-A nrPDB Length = 353 Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%) Query: 66 DKEPYSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQ-------IMDQVVTKHIK 118 +KE ++ + H+ P D + QE +L V N W + +VDQ I DQ + +K Sbjct: 19 EKECHNVWATHACVPTDPNPQEVVLEQVTENFNMWKNDMVDQMQEDVISIWDQCLKPCVK 78 Query: 119 IVDKGFLT 126 + + LT Sbjct: 79 LTNTSTLT 86 >3Q9T-A nrPDB Length = 577 Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 8/95 (8%) Query: 120 VDKGFLTDREYYSAFHDIWNFHKTDMNKYLEKH-HTDEVYIVGVALEYCVKATAISAAEL 178 +DK D EY A N K + + H D V + G A ++ + Sbjct: 361 IDKYLEKDAEYRKA--KAANGGKDPFSPLGQPHFELDFVCMFGTAFQW-----HFPTPKT 413 Query: 179 GYKTTVLLDYTRPISDDPEVINKVKEELKAHNINV 213 G TV++D RPISD EV + + NIN+ Sbjct: 414 GDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINL 448 >6MZJ-A nrPDB Length = 626 Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 28/49 (57%) Query: 66 DKEPYSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQIMDQVVT 114 +KE ++ + H+ P D + QE +L V N W + +VDQ+ + V++ Sbjct: 32 EKEVHNVWATHACVPTDPNPQEVVLENVTENFNMWKNDMVDQMQEDVIS 80 >2Z00-A nrPDB Length = 426 Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust. Identities = 13/39 (33%), Positives = 21/39 (53%) Query: 173 ISAAELGYKTTVLLDYTRPISDDPEVINKVKEELKAHNI 211 ++A GY V + T+P D PE + +KE+ KA + Sbjct: 74 LAAVRGGYTDLVSMPNTKPPVDTPEAVRALKEKAKALGL 112 >5TE7-G nrPDB Length = 350 Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 61 AKNHKDKEPYSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQIMDQVVT 114 AK HK+ E ++ + H+ P D + QE +L V N W + +VDQ+ + +++ Sbjct: 15 AKAHKE-EVHNIWATHACVPTDPNPQEIVLKNVTENFNMWKNDMVDQMHEDIIS 67 >6CK9-G nrPDB Length = 463 Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 28/49 (57%) Query: 66 DKEPYSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQIMDQVVT 114 +KE ++ + H+ P D + QE +L V N W + +VDQ+ + +++ Sbjct: 30 EKEVHNVWATHACVPTDPNPQEMVLENVTENFNMWKNDMVDQMHEDIIS 78 >4R4H-A nrPDB Length = 433 Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 27/49 (55%) Query: 66 DKEPYSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQIMDQVVT 114 D E ++ + H+ P D + QE +L V N W + +VDQ+ + +++ Sbjct: 62 DTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNNMVDQMHEDIIS 110 >5IC5-A nrPDB Length = 166 Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Query: 154 TDEVYIV---GVALEYCVKATAISAAELGYKTTVLLDYTRPISDDPEVINKVKEELKAHN 210 ++EV +V AL+Y + A E G +LLD P + EV+ +V+ + + Sbjct: 28 SNEVIVVRDGAQALDYLNREGDFRAREEGNPAVILLDLKLPKVNGLEVLQQVRSSTQLRS 87 Query: 211 INVV 214 I VV Sbjct: 88 IPVV 91 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 3V8E-A nrPDB 335 1e-92 2WT9-A nrPDB 251 2e-67 3PL1-A nrPDB 230 3e-61 Sequences not found previously or not previously below threshold: 1J2R-A nrPDB 47 5e-06 1NBA-A nrPDB 42 2e-04 4IV9-A nrPDB 41 6e-04 2O2D-A nrPDB 32 0.20 1NHQ-A nrPDB 28 3.3 2Z00-A nrPDB 27 4.4 4H2H-A nrPDB 27 4.7 1XZW-A nrPDB 27 6.0 2ZOF-A nrPDB 27 7.7 >3V8E-A nrPDB Length = 216 Score = 335 bits (858), Expect = 1e-92, Method: Composition-based stats. Identities = 216/216 (100%), Positives = 216/216 (100%) Query: 1 MKTLIVVDMQNDFISPLGSLTVPKGEELINPISDLMQDADRDWHRIVVTRDWHPSRHISF 60 MKTLIVVDMQNDFISPLGSLTVPKGEELINPISDLMQDADRDWHRIVVTRDWHPSRHISF Sbjct: 1 MKTLIVVDMQNDFISPLGSLTVPKGEELINPISDLMQDADRDWHRIVVTRDWHPSRHISF 60 Query: 61 AKNHKDKEPYSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQIMDQVVTKHIKIV 120 AKNHKDKEPYSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQIMDQVVTKHIKIV Sbjct: 61 AKNHKDKEPYSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQIMDQVVTKHIKIV 120 Query: 121 DKGFLTDREYYSAFHDIWNFHKTDMNKYLEKHHTDEVYIVGVALEYCVKATAISAAELGY 180 DKGFLTDREYYSAFHDIWNFHKTDMNKYLEKHHTDEVYIVGVALEYCVKATAISAAELGY Sbjct: 121 DKGFLTDREYYSAFHDIWNFHKTDMNKYLEKHHTDEVYIVGVALEYCVKATAISAAELGY 180 Query: 181 KTTVLLDYTRPISDDPEVINKVKEELKAHNINVVDK 216 KTTVLLDYTRPISDDPEVINKVKEELKAHNINVVDK Sbjct: 181 KTTVLLDYTRPISDDPEVINKVKEELKAHNINVVDK 216 >2WT9-A nrPDB Length = 235 Score = 251 bits (640), Expect = 2e-67, Method: Composition-based stats. Identities = 67/191 (35%), Positives = 105/191 (54%), Gaps = 16/191 (8%) Query: 2 KTLIVVDMQNDFISPLGSLTVPKGEELINPISDLMQDADRDWHRIVVTRDWHPSRHISFA 61 L+VVD+QN F +P G+L V + +I I+ L + +V+T+DWHP HISFA Sbjct: 31 SALVVVDVQNGF-TPGGNLAVADADTIIPTINQLA----GCFENVVLTQDWHPDNHISFA 85 Query: 62 KNHKDKEPYSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQIMDQVVTKHIKIVD 121 NH K+P+ T D +Q +LWP HC++ T ++ + + T + I+ Sbjct: 86 ANHPGKQPFETIEL------DYGSQ--VLWPKHCIQGTHDAEFHPDL--NIPTAQL-IIR 134 Query: 122 KGFLTDREYYSAFHDIWNFHKTDMNKYLEKHHTDEVYIVGVALEYCVKATAISAAELGYK 181 KGF + YSAF + + T + YL++ D VY+VG+A ++CV TA+ A + G+K Sbjct: 135 KGFHAHIDSYSAFMEADHTTMTGLTGYLKERGIDTVYVVGIATDFCVAWTALDAVKQGFK 194 Query: 182 TTVLLDYTRPI 192 T V+ D + I Sbjct: 195 TLVIEDACKGI 205 >3PL1-A nrPDB Length = 186 Score = 230 bits (587), Expect = 3e-61, Method: Composition-based stats. Identities = 66/216 (30%), Positives = 99/216 (45%), Gaps = 35/216 (16%) Query: 1 MKTLIVVDMQNDFISPLGSLTVPKGEELINPISDLMQDADRDWHRIVVTRDWH--PSRHI 58 M+ LI+VD+QNDF GSL V G L ISD + +A D+H +V T+D+H P H Sbjct: 1 MRALIIVDVQNDFCE-GGSLAVTGGAALARAISDYLAEA-ADYHHVVATKDFHIDPGDHF 58 Query: 59 SFAKNHKDKEPYSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQIMDQVVTKHIK 118 S ++ WP HCV T G+ + + Sbjct: 59 SGTPDYSSS-----------------------WPPHCVSGTPGADFHPSLDTSAIEA--- 92 Query: 119 IVDKGFLTDREYYSAFHDIWNFHKTDMNKYLEKHHTDEVYIVGVALEYCVKATAISAAEL 178 + KG T YS F + + + T + +L + DEV +VG+A ++CV+ TA A Sbjct: 93 VFYKGAYTGA--YSGFEGV-DENGTPLLNWLRQRGVDEVDVVGIATDHCVRQTAEDAVRN 149 Query: 179 GYKTTVLLDYTRPISDDPEVINKVKEELKAHNINVV 214 G T VL+D T +S D V EE++ ++ +V Sbjct: 150 GLATRVLVDLTAGVSADTTV--AALEEMRTASVELV 183 >1J2R-A nrPDB Length = 199 Score = 47.5 bits (111), Expect = 5e-06, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 64/196 (32%), Gaps = 44/196 (22%) Query: 2 KTLIVVDMQNDFISPLGSLTVPKGEELINPISDLMQDADRDWHRIVVTRDWHPSRHISFA 61 L+V+D+Q + G +E++N L + + R + ++ Sbjct: 20 TALVVIDLQEGILPFAGGPHT--ADEVVNRAGKLAAKFRASGQPVFLVR-------VGWS 70 Query: 62 KNHKD--KEPYSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQIMDQVVTKHIKI 119 ++ + K+P + P + W T S + +++ + Sbjct: 71 ADYAEALKQPVDAPSPAKVLPENW-------WQHPAALGTTDSDI------EIIKRQWGA 117 Query: 120 VDKGFLTDREYYSAFHDIWNFHKTDMNKYLEKHHTDEVYIVGVALEYCVKATAISAAELG 179 TD+ L + D + + G++ V++TA +A ELG Sbjct: 118 FY--------------------GTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELG 157 Query: 180 YKTTVLLDYTRPISDD 195 + + D S + Sbjct: 158 FNLVIAEDACSAASAE 173 >1NBA-A nrPDB Length = 264 Score = 42.5 bits (98), Expect = 2e-04, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 60/183 (32%), Gaps = 35/183 (19%) Query: 3 TLIVVDMQNDFISPLGSLTVPKGEELINPISDLMQDADRDWHRIVVTRDWHPSRHISFAK 62 +I +D+ N + P + P E +I + + I+ A Sbjct: 46 AVIHIDLANAWTQPGHPFSCPGMETIIPNV-----------------------QRINEAA 82 Query: 63 NHKDKEPYSTYTYHSPRPGDDSTQEGILWPVHCVKNT-WGSQLVDQIMDQVVTKHIKIVD 121 K + T + R T + LW T QI D++ ++V Sbjct: 83 RAKGVPVFYTTNVYRNRDASSGTNDMGLWYSKIPTETLPADSYWAQIDDRIAPADGEVV- 141 Query: 122 KGFLTDREYYSAFHDIWNFHKTDMNKYLEKHHTDEVYIVGVALEYCVKATAISAAELGYK 181 ++ SAF T++ +L + D + + G CV+ T A G++ Sbjct: 142 ----IEKNRASAF------PGTNLELFLTSNRIDTLIVTGATAAGCVRHTVEDAIAKGFR 191 Query: 182 TTV 184 + Sbjct: 192 PII 194 >4IV9-A nrPDB Length = 557 Score = 40.6 bits (93), Expect = 6e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 2/76 (2%) Query: 22 VPKGEELINPISDLMQDADRDWHRIVVTRDWHPSRHISFA--KNHKDKEPYSTYTYHSPR 79 V + + + D D+ R V+ DW H + A N+ ++ YS + P Sbjct: 436 VDDLAAIHPTFASYLLPVDGDYERYVLHHDWLTDPHSAGAFKLNYPGEDVYSQRLFFQPM 495 Query: 80 PGDDSTQEGILWPVHC 95 + ++ L+ C Sbjct: 496 TANSPNKDTGLYLAGC 511 >2O2D-A nrPDB Length = 613 Score = 32.1 bits (71), Expect = 0.20, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 10/135 (7%) Query: 24 KGEELINPISDLMQDADRDWHRIVVTRDW--HPSRHISFAKNHKDKEPYSTYTYHSPRPG 81 G++++ ++ ++ D R + V T +W H + I N + Sbjct: 162 DGKDVMPAVNKVL-DQMRSFSEKVRTGEWKGHTGKAIRHVVNIGIGGSDLGPVMATEALK 220 Query: 82 DDSTQEGILWPVHCVKNTWGSQLVDQIMDQVVTKHIKIVDKGFLTDREYYSAFHDIWNFH 141 S ++ L V V T ++++ I + + IV T +E + Sbjct: 221 PFSQRDLSLHFVSNVDGTHIAEVLKSID---IEATLFIVASKTFTTQETITNALSA---- 273 Query: 142 KTDMNKYLEKHHTDE 156 + + YL DE Sbjct: 274 RRALLDYLRSRGIDE 288 >1NHQ-A nrPDB Length = 447 Score = 27.8 bits (60), Expect = 3.3, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%) Query: 149 LEKHHTD-EVY-IVGVALEYCVKATAISAAELGYKTTVL--LDYTRPISDDPEVINKVKE 204 L++ D EV +V + Y A + A+ G K TV+ LD + D E + + E Sbjct: 140 LKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTE 199 Query: 205 ELKAHNINV 213 E++A+NI + Sbjct: 200 EMEANNITI 208 >2Z00-A nrPDB Length = 426 Score = 27.5 bits (59), Expect = 4.4, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 20/36 (55%) Query: 173 ISAAELGYKTTVLLDYTRPISDDPEVINKVKEELKA 208 ++A GY V + T+P D PE + +KE+ KA Sbjct: 74 LAAVRGGYTDLVSMPNTKPPVDTPEAVRALKEKAKA 109 >4H2H-A nrPDB Length = 376 Score = 27.5 bits (59), Expect = 4.7, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 4/85 (4%) Query: 133 AFHDIWNFH-KTDMNKYLEKHHTDEV---YIVGVALEYCVKATAISAAELGYKTTVLLDY 188 A HD+W +++ L TD V Y +GV A+ GY + Sbjct: 115 AVHDLWGKRLGVPVHELLGGALTDSVSSYYSLGVMEPDEAARQALEKQREGYSRLQVKLG 174 Query: 189 TRPISDDPEVINKVKEELKAHNINV 213 RPI D E I KV E ++ I + Sbjct: 175 ARPIEIDIEAIRKVWEAVRGTGIAL 199 >1XZW-A nrPDB Length = 426 Score = 27.1 bits (58), Expect = 6.0, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%) Query: 52 WHPSRH-ISFAKNHKDKEPYSTYTYHSPRPGDDSTQEGILW 91 W H I +A + + +P+ +T P P + S LW Sbjct: 196 WTAGNHEIDYAPDIGEYQPFVPFTNRYPTPHEASGSGDPLW 236 >2ZOF-A nrPDB Length = 479 Score = 26.7 bits (57), Expect = 7.7, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 18/143 (12%) Query: 6 VVDMQNDFISPLGSLTVPKGEELINPISDLMQDADRDWHRIVVTRDWHPSRHISFAKN-- 63 V + D IS +G L KG+ LI I+D + + H + D+ FAK+ Sbjct: 240 VHEAMTDLISLMGCLVDKKGKILIPGINDAVAPVTDEEHALYDHIDF---DMEEFAKDVG 296 Query: 64 -----HKDKEP-------YSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQIMDQ 111 H K+ Y + + H + + P V + +LV ++ + Sbjct: 297 AETLLHSCKKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVV-GKFSIRLVPDMIPE 355 Query: 112 VVTKHIKIVDKGFLTDREYYSAF 134 VV++ + + + + F Sbjct: 356 VVSEQVSSYLSKKFAELQSPNKF 378 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.314 0.123 0.323 Lambda K H 0.267 0.0376 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,850,764 Number of Sequences: 36641 Number of extensions: 295608 Number of successful extensions: 997 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 932 Number of HSP's gapped (non-prelim): 60 length of query: 216 length of database: 10,336,785 effective HSP length: 93 effective length of query: 123 effective length of database: 6,929,172 effective search space: 852288156 effective search space used: 852288156 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 57 (26.7 bits)