BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P52286
         (194 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

6GSA-C nrPDB                                                          389   e-109
1NEX-A nrPDB                                                          304   1e-83
5AN3-D nrPDB                                                          229   6e-61
3WSO-B nrPDB                                                          157   4e-39
1P22-B nrPDB                                                          149   8e-37
1FS2-B nrPDB                                                          124   2e-29
5HZG-C nrPDB                                                          122   1e-28
5ZB2-B nrPDB                                                           28   2.7  
4EEF-G nrPDB                                                           28   2.9  
1HV2-A nrPDB                                                           28   3.1  
6ENY-D nrPDB                                                           27   4.8  
5A5T-C nrPDB                                                           27   6.3  
3EU9-A nrPDB                                                           27   6.6  
2RCB-A nrPDB                                                           27   6.7  
3M9V-A nrPDB                                                           27   8.2  

>6GSA-C nrPDB
          Length = 197

 Score =  389 bits (1000), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/193 (100%), Positives = 193/193 (100%)

Query: 2   VTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKD 61
           VTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKD
Sbjct: 3   VTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKD 62

Query: 62  NNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDR 121
           NNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDR
Sbjct: 63  NNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDR 122

Query: 122 EFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEE 181
           EFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEE
Sbjct: 123 EFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEE 182

Query: 182 AAIRRENEWAEDR 194
           AAIRRENEWAEDR
Sbjct: 183 AAIRRENEWAEDR 195


>1NEX-A nrPDB
          Length = 169

 Score =  304 bits (779), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 166/194 (85%), Positives = 166/194 (85%), Gaps = 28/194 (14%)

Query: 1   MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSK 60
           MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDM                        
Sbjct: 4   MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDM------------------------ 39

Query: 61  DNNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD 120
               GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD
Sbjct: 40  ----GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD 95

Query: 121 REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEE 180
           REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEE
Sbjct: 96  REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEE 155

Query: 181 EAAIRRENEWAEDR 194
           EAAIRRENEWAEDR
Sbjct: 156 EAAIRRENEWAEDR 169


>5AN3-D nrPDB
          Length = 131

 Score =  229 bits (584), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 129/158 (81%), Positives = 130/158 (82%), Gaps = 27/158 (17%)

Query: 1   MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSK 60
           MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLND                         
Sbjct: 1   MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDA------------------------ 36

Query: 61  DNNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD 120
              +GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD
Sbjct: 37  ---SGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD 93

Query: 121 REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMI 158
           REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMI
Sbjct: 94  REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMI 131


>3WSO-B nrPDB
          Length = 166

 Score =  157 bits (396), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 90/193 (46%), Positives = 123/193 (63%), Gaps = 35/193 (18%)

Query: 5   NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNN 64
           ++ L S +GE F VD +IA++S+ +K  L D+                            
Sbjct: 6   SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDL---------------------------- 37

Query: 65  GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSA---PVDSWDR 121
           G DD+ DDD +  P+PNV +++L+KVI+W  HH+D   P EDD++  K     PV  WD+
Sbjct: 38  GMDDEGDDDPV--PLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPV--WDQ 93

Query: 122 EFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEE 181
           EFLKVDQ  L+E+ILAANYL+IK LLD  CK VA MI+G++PEEIR+TFNI NDFT EEE
Sbjct: 94  EFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 153

Query: 182 AAIRRENEWAEDR 194
           A +R+EN+W E++
Sbjct: 154 AQVRKENQWCEEK 166


>1P22-B nrPDB
          Length = 145

 Score =  149 bits (376), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 82/190 (43%), Positives = 113/190 (59%), Gaps = 47/190 (24%)

Query: 5   NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNN 64
           ++ L S +GE F VD +IA++S+ +K  L D+                            
Sbjct: 3   SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDL---------------------------- 34

Query: 65  GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFL 124
           G D         +P+PNV +++L+KVI+W  HH+D    D  DD       +  WD+EFL
Sbjct: 35  GMDP--------VPLPNVNAAILKKVIQWCTHHKD----DPPDD-------IPVWDQEFL 75

Query: 125 KVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAI 184
           KVDQ  L+E+ILAANYL+IK LLD  CK VA MI+G++PEEIR+TFNI NDFT EEEA +
Sbjct: 76  KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQV 135

Query: 185 RRENEWAEDR 194
           R+EN+W E++
Sbjct: 136 RKENQWCEEK 145


>1FS2-B nrPDB
          Length = 141

 Score =  124 bits (312), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/176 (43%), Positives = 104/176 (59%), Gaps = 41/176 (23%)

Query: 5   NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNN 64
           ++ L S +GE F VD +IA++S+ +K  L D+                            
Sbjct: 3   SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDL---------------------------- 34

Query: 65  GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSA---PVDSWDR 121
           G D         +P+PNV +++L+KVI+W  HH+D   P EDD++  K     PV  WD+
Sbjct: 35  GMDP--------VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPV--WDQ 84

Query: 122 EFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFT 177
           EFLKVDQ  L+E+ILAANYL+IK LLD  CK VA MI+G++PEEIR+TFNI NDFT
Sbjct: 85  EFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFT 140


>5HZG-C nrPDB
          Length = 169

 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/117 (52%), Positives = 86/117 (73%), Gaps = 2/117 (1%)

Query: 77  MPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAP--VDSWDREFLKVDQEMLYEI 134
           +P+PNV S +L KVIE+ + H ++     +  +   ++   + +WD +F+K+DQ  L+E+
Sbjct: 51  VPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFEL 110

Query: 135 ILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 191
           ILAANYLNIK LLD  C+ VA+MI+G++PEEIR TFNI NDFTPEEE  +RREN+WA
Sbjct: 111 ILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWA 167


>5ZB2-B nrPDB
          Length = 103

 Score = 28.1 bits (61), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 11/60 (18%)

Query: 84  SSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNI 143
           S +L+K +E+  ++   +   EDDD+     P      EF ++  EM  E++LAA+YL+I
Sbjct: 55  SHILEKAVEYLNYNLKYSGVSEDDDE----IP------EF-EIPTEMSLELLLAADYLSI 103


>4EEF-G nrPDB
          Length = 74

 Score = 27.7 bits (60), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 8/21 (38%), Positives = 17/21 (80%)

Query: 152 KVVAEMIRGRSPEEIRRTFNI 172
           K VA+ ++GR+PEE+++ + +
Sbjct: 47  KKVAQYVKGRTPEEVKKHYEL 67


>1HV2-A nrPDB
          Length = 99

 Score = 27.7 bits (60), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 11/60 (18%)

Query: 84  SSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNI 143
           S +L+K +E+  ++   +   EDDD+     P      EF ++  EM  E++LAA+YL+I
Sbjct: 51  SHILEKAVEYLNYNLKYSGVSEDDDE----IP------EF-EIPTEMSLELLLAADYLSI 99


>6ENY-D nrPDB
          Length = 481

 Score = 26.9 bits (58), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 25/48 (52%)

Query: 6   VVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDS 53
           V + + +GE+F + ++ +     L+ +L D  D NL+    SE   +S
Sbjct: 302 VAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPES 349


>5A5T-C nrPDB
          Length = 843

 Score = 26.6 bits (57), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 37  HDSNLQNNSDSESDSDSETNHKSKDNNNGDDDDEDDDEI 75
           H +N + N +  +D D+E N   +D+    D+DED+D +
Sbjct: 85  HITNYKQNPEQSADEDAEKN--EEDSEGSSDEDEDEDGV 121


>3EU9-A nrPDB
          Length = 240

 Score = 26.6 bits (57), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 131 LYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEI---RRTFNIVNDFTPEEEA 182
           L+  +LA N   I  LL+AG  V A+ I+G S  ++   R+   ++N      +A
Sbjct: 181 LHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235


>2RCB-A nrPDB
          Length = 292

 Score = 26.6 bits (57), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 28/61 (45%)

Query: 94  AEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKV 153
           AE +  ++FP+      R SAP        L  D   L   I+  + L+ +  +DA CK+
Sbjct: 179 AEAYIKASFPEMHAHMRRHSAPTTPHGVAMLTSDPPKLNAFIMDKSLLDYEVSIDADCKL 238

Query: 154 V 154
           +
Sbjct: 239 L 239


>3M9V-A nrPDB
          Length = 439

 Score = 26.6 bits (57), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 7/40 (17%)

Query: 73  DEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRK 112
           D +   +P +RS+        AEH RD  FP +  D  RK
Sbjct: 29  DRLAAHLPRIRSTA-------AEHDRDGTFPTDTFDALRK 61


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

6GSA-C nrPDB                                                          273   4e-74
1NEX-A nrPDB                                                          246   4e-66
3WSO-B nrPDB                                                          218   1e-57
1P22-B nrPDB                                                          209   5e-55
1FS2-B nrPDB                                                          188   1e-48
5AN3-D nrPDB                                                          184   2e-47
5HZG-C nrPDB                                                          166   6e-42

Sequences not found previously or not previously below threshold:

2BMB-A nrPDB                                                           29   0.87 
4DJT-A nrPDB                                                           29   1.2  
1JZX-K nrPDB                                                           28   2.2  
5ZB2-B nrPDB                                                           28   2.5  
6ENY-D nrPDB                                                           28   2.6  
1HV2-A nrPDB                                                           28   3.9  
3LN6-A nrPDB                                                           27   4.2  
2VDU-B nrPDB                                                           27   6.0  
4EEF-G nrPDB                                                           27   6.0  


CONVERGED!
>6GSA-C nrPDB
          Length = 197

 Score =  273 bits (697), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 193/193 (100%), Positives = 193/193 (100%)

Query: 2   VTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKD 61
           VTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKD
Sbjct: 3   VTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKD 62

Query: 62  NNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDR 121
           NNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDR
Sbjct: 63  NNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDR 122

Query: 122 EFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEE 181
           EFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEE
Sbjct: 123 EFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEE 182

Query: 182 AAIRRENEWAEDR 194
           AAIRRENEWAEDR
Sbjct: 183 AAIRRENEWAEDR 195


>1NEX-A nrPDB
          Length = 169

 Score =  246 bits (628), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 166/194 (85%), Positives = 166/194 (85%), Gaps = 28/194 (14%)

Query: 1   MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSK 60
           MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDM                        
Sbjct: 4   MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDM------------------------ 39

Query: 61  DNNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD 120
               GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD
Sbjct: 40  ----GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD 95

Query: 121 REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEE 180
           REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEE
Sbjct: 96  REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEE 155

Query: 181 EAAIRRENEWAEDR 194
           EAAIRRENEWAEDR
Sbjct: 156 EAAIRRENEWAEDR 169


>3WSO-B nrPDB
          Length = 166

 Score =  218 bits (554), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 88/191 (46%), Positives = 122/191 (63%), Gaps = 31/191 (16%)

Query: 5   NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNN 64
           ++ L S +GE F VD +IA++S+ +K  L D+                            
Sbjct: 6   SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDL---------------------------- 37

Query: 65  GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSA-PVDSWDREF 123
           G DD+ DDD   +P+PNV +++L+KVI+W  HH+D   P EDD++  K    +  WD+EF
Sbjct: 38  GMDDEGDDDP--VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEF 95

Query: 124 LKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAA 183
           LKVDQ  L+E+ILAANYL+IK LLD  CK VA MI+G++PEEIR+TFNI NDFT EEEA 
Sbjct: 96  LKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 155

Query: 184 IRRENEWAEDR 194
           +R+EN+W E++
Sbjct: 156 VRKENQWCEEK 166


>1P22-B nrPDB
          Length = 145

 Score =  209 bits (532), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 80/190 (42%), Positives = 111/190 (58%), Gaps = 47/190 (24%)

Query: 5   NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNN 64
           ++ L S +GE F VD +IA++S+ +K  L D+                            
Sbjct: 3   SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDL---------------------------- 34

Query: 65  GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFL 124
           G D         +P+PNV +++L+KVI+W  HH+D    D           +  WD+EFL
Sbjct: 35  GMDP--------VPLPNVNAAILKKVIQWCTHHKDDPPDD-----------IPVWDQEFL 75

Query: 125 KVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAI 184
           KVDQ  L+E+ILAANYL+IK LLD  CK VA MI+G++PEEIR+TFNI NDFT EEEA +
Sbjct: 76  KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQV 135

Query: 185 RRENEWAEDR 194
           R+EN+W E++
Sbjct: 136 RKENQWCEEK 145


>1FS2-B nrPDB
          Length = 141

 Score =  188 bits (477), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 75/175 (42%), Positives = 103/175 (58%), Gaps = 37/175 (21%)

Query: 5   NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNN 64
           ++ L S +GE F VD +IA++S+ +K  L D+                            
Sbjct: 3   SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDL---------------------------- 34

Query: 65  GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSA-PVDSWDREF 123
           G D         +P+PNV +++L+KVI+W  HH+D   P EDD++  K    +  WD+EF
Sbjct: 35  GMDP--------VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEF 86

Query: 124 LKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTP 178
           LKVDQ  L+E+ILAANYL+IK LLD  CK VA MI+G++PEEIR+TFNI NDFT 
Sbjct: 87  LKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTE 141


>5AN3-D nrPDB
          Length = 131

 Score =  184 bits (467), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 129/158 (81%), Positives = 130/158 (82%), Gaps = 27/158 (17%)

Query: 1   MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSK 60
           MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLND                         
Sbjct: 1   MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDA------------------------ 36

Query: 61  DNNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD 120
              +GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD
Sbjct: 37  ---SGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD 93

Query: 121 REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMI 158
           REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMI
Sbjct: 94  REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMI 131


>5HZG-C nrPDB
          Length = 169

 Score =  166 bits (419), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 107/190 (56%), Gaps = 37/190 (19%)

Query: 6   VVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNNG 65
           +VL S +GE F V++ +A  S  + + + D                              
Sbjct: 15  IVLKSSDGESFEVEEAVALESQTIAHMVED------------------------------ 44

Query: 66  DDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAP--VDSWDREF 123
                D  +  +P+PNV S +L KVIE+ + H ++     +  +   ++   + +WD +F
Sbjct: 45  -----DCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADF 99

Query: 124 LKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAA 183
           +K+DQ  L+E+ILAANYLNIK LLD  C+ VA+MI+G++PEEIR TFNI NDFTPEEE  
Sbjct: 100 MKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEE 159

Query: 184 IRRENEWAED 193
           +RREN+WA +
Sbjct: 160 VRRENQWAFE 169


>2BMB-A nrPDB
          Length = 545

 Score = 29.5 bits (64), Expect = 0.87,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 9/83 (10%)

Query: 100 SNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAG-CKVVAEMI 158
           +  PD   D     A ++S   + +K+ ++ L        YL+   ++D G C      I
Sbjct: 232 NATPDSFSDGGEHFADIESQLNDIIKLCKDAL--------YLHESVIIDVGGCSTRPNSI 283

Query: 159 RGRSPEEIRRTFNIVNDFTPEEE 181
           +    EEIRR+  ++       E
Sbjct: 284 QASEEEEIRRSIPLIKAIRESTE 306


>4DJT-A nrPDB
          Length = 218

 Score = 29.1 bits (63), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 116 VDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVND 175
           +  W +EF  V       I++ AN ++IK       K+V E+++G++ E    +    ++
Sbjct: 103 LARWVKEFQAV-VGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN 161

Query: 176 F 176
           F
Sbjct: 162 F 162


>1JZX-K nrPDB
          Length = 205

 Score = 28.3 bits (61), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 75 IVMPVPNVRSSVLQKVIEW 93
          I +P+P V S VL +V+ W
Sbjct: 15 IELPLPEVNSGVLHEVVTW 33


>5ZB2-B nrPDB
          Length = 103

 Score = 27.9 bits (60), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 11/67 (16%)

Query: 77  MPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIIL 136
           + +    S +L+K +E+  ++   +   EDDD+  +            ++  EM  E++L
Sbjct: 48  IELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPE-----------FEIPTEMSLELLL 96

Query: 137 AANYLNI 143
           AA+YL+I
Sbjct: 97  AADYLSI 103


>6ENY-D nrPDB
          Length = 481

 Score = 27.9 bits (60), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 42/110 (38%), Gaps = 8/110 (7%)

Query: 6   VVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNNG 65
           V + + +GE+F + ++ +     L+ +L D  D NL+    SE   +S            
Sbjct: 302 VAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAEN 361

Query: 66  DDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAP 115
            D+  +++   +        +++    W  H ++     ++  +     P
Sbjct: 362 FDEIVNNENKDV--------LIEFYAPWCGHCKNLEPKYKELGEKLSKDP 403


>1HV2-A nrPDB
          Length = 99

 Score = 27.6 bits (59), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 11/67 (16%)

Query: 77  MPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIIL 136
           + +    S +L+K +E+  ++   +   EDDD+  +            ++  EM  E++L
Sbjct: 44  IELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPE-----------FEIPTEMSLELLL 92

Query: 137 AANYLNI 143
           AA+YL+I
Sbjct: 93  AADYLSI 99


>3LN6-A nrPDB
          Length = 750

 Score = 27.2 bits (58), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 2/86 (2%)

Query: 27  LLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNNGDDDDEDDDEIVMPVPNVRSSV 86
           L  +  L D+    +      E D   +  H S      + +    D  ++P+      V
Sbjct: 428 LSTQLLLFDVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKNGNMTSKDNYIVPLAMANKVV 487

Query: 87  LQKVIEWAEHHRDSNFPDEDDDDSRK 112
            +K+++  E H  + F DE  D    
Sbjct: 488 TKKILD--EKHFPTPFGDEFTDRKEA 511


>2VDU-B nrPDB
          Length = 450

 Score = 26.8 bits (57), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%)

Query: 5   NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNN 64
           NV+ +S   + F V     E S + KN+   +  +  +N+    ++  +E +     +  
Sbjct: 356 NVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVVNNEKSNEFDSAIIQSVQ 415

Query: 65  GDDDDEDDDEIVMPVPNVRS 84
           GD +     E + P+ NV S
Sbjct: 416 GDSNLVTKKEEIYPLYNVSS 435


>4EEF-G nrPDB
          Length = 74

 Score = 26.8 bits (57), Expect = 6.0,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 17/22 (77%)

Query: 152 KVVAEMIRGRSPEEIRRTFNIV 173
           K VA+ ++GR+PEE+++ + + 
Sbjct: 47  KKVAQYVKGRTPEEVKKHYELE 68


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.307    0.115    0.315 

Lambda     K      H
   0.267   0.0349    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,170,957
Number of Sequences: 36641
Number of extensions: 272204
Number of successful extensions: 1284
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 858
Number of HSP's gapped (non-prelim): 296
length of query: 194
length of database: 10,336,785
effective HSP length: 92
effective length of query: 102
effective length of database: 6,965,813
effective search space: 710512926
effective search space used: 710512926
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.4 bits)