BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P52286
(194 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
6GSA-C nrPDB 389 e-109
1NEX-A nrPDB 304 1e-83
5AN3-D nrPDB 229 6e-61
3WSO-B nrPDB 157 4e-39
1P22-B nrPDB 149 8e-37
1FS2-B nrPDB 124 2e-29
5HZG-C nrPDB 122 1e-28
5ZB2-B nrPDB 28 2.7
4EEF-G nrPDB 28 2.9
1HV2-A nrPDB 28 3.1
6ENY-D nrPDB 27 4.8
5A5T-C nrPDB 27 6.3
3EU9-A nrPDB 27 6.6
2RCB-A nrPDB 27 6.7
3M9V-A nrPDB 27 8.2
>6GSA-C nrPDB
Length = 197
Score = 389 bits (1000), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/193 (100%), Positives = 193/193 (100%)
Query: 2 VTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKD 61
VTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKD
Sbjct: 3 VTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKD 62
Query: 62 NNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDR 121
NNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDR
Sbjct: 63 NNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDR 122
Query: 122 EFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEE 181
EFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEE
Sbjct: 123 EFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEE 182
Query: 182 AAIRRENEWAEDR 194
AAIRRENEWAEDR
Sbjct: 183 AAIRRENEWAEDR 195
>1NEX-A nrPDB
Length = 169
Score = 304 bits (779), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 166/194 (85%), Positives = 166/194 (85%), Gaps = 28/194 (14%)
Query: 1 MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSK 60
MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDM
Sbjct: 4 MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDM------------------------ 39
Query: 61 DNNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD 120
GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD
Sbjct: 40 ----GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD 95
Query: 121 REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEE 180
REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEE
Sbjct: 96 REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEE 155
Query: 181 EAAIRRENEWAEDR 194
EAAIRRENEWAEDR
Sbjct: 156 EAAIRRENEWAEDR 169
>5AN3-D nrPDB
Length = 131
Score = 229 bits (584), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 129/158 (81%), Positives = 130/158 (82%), Gaps = 27/158 (17%)
Query: 1 MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSK 60
MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLND
Sbjct: 1 MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDA------------------------ 36
Query: 61 DNNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD 120
+GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD
Sbjct: 37 ---SGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD 93
Query: 121 REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMI 158
REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMI
Sbjct: 94 REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMI 131
>3WSO-B nrPDB
Length = 166
Score = 157 bits (396), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 90/193 (46%), Positives = 123/193 (63%), Gaps = 35/193 (18%)
Query: 5 NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNN 64
++ L S +GE F VD +IA++S+ +K L D+
Sbjct: 6 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDL---------------------------- 37
Query: 65 GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSA---PVDSWDR 121
G DD+ DDD + P+PNV +++L+KVI+W HH+D P EDD++ K PV WD+
Sbjct: 38 GMDDEGDDDPV--PLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPV--WDQ 93
Query: 122 EFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEE 181
EFLKVDQ L+E+ILAANYL+IK LLD CK VA MI+G++PEEIR+TFNI NDFT EEE
Sbjct: 94 EFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 153
Query: 182 AAIRRENEWAEDR 194
A +R+EN+W E++
Sbjct: 154 AQVRKENQWCEEK 166
>1P22-B nrPDB
Length = 145
Score = 149 bits (376), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 113/190 (59%), Gaps = 47/190 (24%)
Query: 5 NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNN 64
++ L S +GE F VD +IA++S+ +K L D+
Sbjct: 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDL---------------------------- 34
Query: 65 GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFL 124
G D +P+PNV +++L+KVI+W HH+D D DD + WD+EFL
Sbjct: 35 GMDP--------VPLPNVNAAILKKVIQWCTHHKD----DPPDD-------IPVWDQEFL 75
Query: 125 KVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAI 184
KVDQ L+E+ILAANYL+IK LLD CK VA MI+G++PEEIR+TFNI NDFT EEEA +
Sbjct: 76 KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQV 135
Query: 185 RRENEWAEDR 194
R+EN+W E++
Sbjct: 136 RKENQWCEEK 145
>1FS2-B nrPDB
Length = 141
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 104/176 (59%), Gaps = 41/176 (23%)
Query: 5 NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNN 64
++ L S +GE F VD +IA++S+ +K L D+
Sbjct: 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDL---------------------------- 34
Query: 65 GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSA---PVDSWDR 121
G D +P+PNV +++L+KVI+W HH+D P EDD++ K PV WD+
Sbjct: 35 GMDP--------VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPV--WDQ 84
Query: 122 EFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFT 177
EFLKVDQ L+E+ILAANYL+IK LLD CK VA MI+G++PEEIR+TFNI NDFT
Sbjct: 85 EFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFT 140
>5HZG-C nrPDB
Length = 169
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 86/117 (73%), Gaps = 2/117 (1%)
Query: 77 MPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAP--VDSWDREFLKVDQEMLYEI 134
+P+PNV S +L KVIE+ + H ++ + + ++ + +WD +F+K+DQ L+E+
Sbjct: 51 VPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFEL 110
Query: 135 ILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 191
ILAANYLNIK LLD C+ VA+MI+G++PEEIR TFNI NDFTPEEE +RREN+WA
Sbjct: 111 ILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWA 167
>5ZB2-B nrPDB
Length = 103
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 11/60 (18%)
Query: 84 SSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNI 143
S +L+K +E+ ++ + EDDD+ P EF ++ EM E++LAA+YL+I
Sbjct: 55 SHILEKAVEYLNYNLKYSGVSEDDDE----IP------EF-EIPTEMSLELLLAADYLSI 103
>4EEF-G nrPDB
Length = 74
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 8/21 (38%), Positives = 17/21 (80%)
Query: 152 KVVAEMIRGRSPEEIRRTFNI 172
K VA+ ++GR+PEE+++ + +
Sbjct: 47 KKVAQYVKGRTPEEVKKHYEL 67
>1HV2-A nrPDB
Length = 99
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 11/60 (18%)
Query: 84 SSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNI 143
S +L+K +E+ ++ + EDDD+ P EF ++ EM E++LAA+YL+I
Sbjct: 51 SHILEKAVEYLNYNLKYSGVSEDDDE----IP------EF-EIPTEMSLELLLAADYLSI 99
>6ENY-D nrPDB
Length = 481
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 6 VVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDS 53
V + + +GE+F + ++ + L+ +L D D NL+ SE +S
Sbjct: 302 VAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPES 349
>5A5T-C nrPDB
Length = 843
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 37 HDSNLQNNSDSESDSDSETNHKSKDNNNGDDDDEDDDEI 75
H +N + N + +D D+E N +D+ D+DED+D +
Sbjct: 85 HITNYKQNPEQSADEDAEKN--EEDSEGSSDEDEDEDGV 121
>3EU9-A nrPDB
Length = 240
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 131 LYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEI---RRTFNIVNDFTPEEEA 182
L+ +LA N I LL+AG V A+ I+G S ++ R+ ++N +A
Sbjct: 181 LHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235
>2RCB-A nrPDB
Length = 292
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 94 AEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKV 153
AE + ++FP+ R SAP L D L I+ + L+ + +DA CK+
Sbjct: 179 AEAYIKASFPEMHAHMRRHSAPTTPHGVAMLTSDPPKLNAFIMDKSLLDYEVSIDADCKL 238
Query: 154 V 154
+
Sbjct: 239 L 239
>3M9V-A nrPDB
Length = 439
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Query: 73 DEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRK 112
D + +P +RS+ AEH RD FP + D RK
Sbjct: 29 DRLAAHLPRIRSTA-------AEHDRDGTFPTDTFDALRK 61
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
6GSA-C nrPDB 273 4e-74
1NEX-A nrPDB 246 4e-66
3WSO-B nrPDB 218 1e-57
1P22-B nrPDB 209 5e-55
1FS2-B nrPDB 188 1e-48
5AN3-D nrPDB 184 2e-47
5HZG-C nrPDB 166 6e-42
Sequences not found previously or not previously below threshold:
2BMB-A nrPDB 29 0.87
4DJT-A nrPDB 29 1.2
1JZX-K nrPDB 28 2.2
5ZB2-B nrPDB 28 2.5
6ENY-D nrPDB 28 2.6
1HV2-A nrPDB 28 3.9
3LN6-A nrPDB 27 4.2
2VDU-B nrPDB 27 6.0
4EEF-G nrPDB 27 6.0
CONVERGED!
>6GSA-C nrPDB
Length = 197
Score = 273 bits (697), Expect = 4e-74, Method: Composition-based stats.
Identities = 193/193 (100%), Positives = 193/193 (100%)
Query: 2 VTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKD 61
VTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKD
Sbjct: 3 VTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKD 62
Query: 62 NNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDR 121
NNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDR
Sbjct: 63 NNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDR 122
Query: 122 EFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEE 181
EFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEE
Sbjct: 123 EFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEE 182
Query: 182 AAIRRENEWAEDR 194
AAIRRENEWAEDR
Sbjct: 183 AAIRRENEWAEDR 195
>1NEX-A nrPDB
Length = 169
Score = 246 bits (628), Expect = 4e-66, Method: Composition-based stats.
Identities = 166/194 (85%), Positives = 166/194 (85%), Gaps = 28/194 (14%)
Query: 1 MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSK 60
MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDM
Sbjct: 4 MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDM------------------------ 39
Query: 61 DNNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD 120
GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD
Sbjct: 40 ----GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD 95
Query: 121 REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEE 180
REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEE
Sbjct: 96 REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEE 155
Query: 181 EAAIRRENEWAEDR 194
EAAIRRENEWAEDR
Sbjct: 156 EAAIRRENEWAEDR 169
>3WSO-B nrPDB
Length = 166
Score = 218 bits (554), Expect = 1e-57, Method: Composition-based stats.
Identities = 88/191 (46%), Positives = 122/191 (63%), Gaps = 31/191 (16%)
Query: 5 NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNN 64
++ L S +GE F VD +IA++S+ +K L D+
Sbjct: 6 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDL---------------------------- 37
Query: 65 GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSA-PVDSWDREF 123
G DD+ DDD +P+PNV +++L+KVI+W HH+D P EDD++ K + WD+EF
Sbjct: 38 GMDDEGDDDP--VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEF 95
Query: 124 LKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAA 183
LKVDQ L+E+ILAANYL+IK LLD CK VA MI+G++PEEIR+TFNI NDFT EEEA
Sbjct: 96 LKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 155
Query: 184 IRRENEWAEDR 194
+R+EN+W E++
Sbjct: 156 VRKENQWCEEK 166
>1P22-B nrPDB
Length = 145
Score = 209 bits (532), Expect = 5e-55, Method: Composition-based stats.
Identities = 80/190 (42%), Positives = 111/190 (58%), Gaps = 47/190 (24%)
Query: 5 NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNN 64
++ L S +GE F VD +IA++S+ +K L D+
Sbjct: 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDL---------------------------- 34
Query: 65 GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFL 124
G D +P+PNV +++L+KVI+W HH+D D + WD+EFL
Sbjct: 35 GMDP--------VPLPNVNAAILKKVIQWCTHHKDDPPDD-----------IPVWDQEFL 75
Query: 125 KVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAI 184
KVDQ L+E+ILAANYL+IK LLD CK VA MI+G++PEEIR+TFNI NDFT EEEA +
Sbjct: 76 KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQV 135
Query: 185 RRENEWAEDR 194
R+EN+W E++
Sbjct: 136 RKENQWCEEK 145
>1FS2-B nrPDB
Length = 141
Score = 188 bits (477), Expect = 1e-48, Method: Composition-based stats.
Identities = 75/175 (42%), Positives = 103/175 (58%), Gaps = 37/175 (21%)
Query: 5 NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNN 64
++ L S +GE F VD +IA++S+ +K L D+
Sbjct: 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDL---------------------------- 34
Query: 65 GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSA-PVDSWDREF 123
G D +P+PNV +++L+KVI+W HH+D P EDD++ K + WD+EF
Sbjct: 35 GMDP--------VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEF 86
Query: 124 LKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTP 178
LKVDQ L+E+ILAANYL+IK LLD CK VA MI+G++PEEIR+TFNI NDFT
Sbjct: 87 LKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTE 141
>5AN3-D nrPDB
Length = 131
Score = 184 bits (467), Expect = 2e-47, Method: Composition-based stats.
Identities = 129/158 (81%), Positives = 130/158 (82%), Gaps = 27/158 (17%)
Query: 1 MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSK 60
MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLND
Sbjct: 1 MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDA------------------------ 36
Query: 61 DNNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD 120
+GDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD
Sbjct: 37 ---SGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWD 93
Query: 121 REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMI 158
REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMI
Sbjct: 94 REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMI 131
>5HZG-C nrPDB
Length = 169
Score = 166 bits (419), Expect = 6e-42, Method: Composition-based stats.
Identities = 72/190 (37%), Positives = 107/190 (56%), Gaps = 37/190 (19%)
Query: 6 VVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNNG 65
+VL S +GE F V++ +A S + + + D
Sbjct: 15 IVLKSSDGESFEVEEAVALESQTIAHMVED------------------------------ 44
Query: 66 DDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAP--VDSWDREF 123
D + +P+PNV S +L KVIE+ + H ++ + + ++ + +WD +F
Sbjct: 45 -----DCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADF 99
Query: 124 LKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAA 183
+K+DQ L+E+ILAANYLNIK LLD C+ VA+MI+G++PEEIR TFNI NDFTPEEE
Sbjct: 100 MKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEE 159
Query: 184 IRRENEWAED 193
+RREN+WA +
Sbjct: 160 VRRENQWAFE 169
>2BMB-A nrPDB
Length = 545
Score = 29.5 bits (64), Expect = 0.87, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 100 SNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAG-CKVVAEMI 158
+ PD D A ++S + +K+ ++ L YL+ ++D G C I
Sbjct: 232 NATPDSFSDGGEHFADIESQLNDIIKLCKDAL--------YLHESVIIDVGGCSTRPNSI 283
Query: 159 RGRSPEEIRRTFNIVNDFTPEEE 181
+ EEIRR+ ++ E
Sbjct: 284 QASEEEEIRRSIPLIKAIRESTE 306
>4DJT-A nrPDB
Length = 218
Score = 29.1 bits (63), Expect = 1.2, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 116 VDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVND 175
+ W +EF V I++ AN ++IK K+V E+++G++ E + ++
Sbjct: 103 LARWVKEFQAV-VGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN 161
Query: 176 F 176
F
Sbjct: 162 F 162
>1JZX-K nrPDB
Length = 205
Score = 28.3 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 75 IVMPVPNVRSSVLQKVIEW 93
I +P+P V S VL +V+ W
Sbjct: 15 IELPLPEVNSGVLHEVVTW 33
>5ZB2-B nrPDB
Length = 103
Score = 27.9 bits (60), Expect = 2.5, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 77 MPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIIL 136
+ + S +L+K +E+ ++ + EDDD+ + ++ EM E++L
Sbjct: 48 IELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPE-----------FEIPTEMSLELLL 96
Query: 137 AANYLNI 143
AA+YL+I
Sbjct: 97 AADYLSI 103
>6ENY-D nrPDB
Length = 481
Score = 27.9 bits (60), Expect = 2.6, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 42/110 (38%), Gaps = 8/110 (7%)
Query: 6 VVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNNG 65
V + + +GE+F + ++ + L+ +L D D NL+ SE +S
Sbjct: 302 VAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAEN 361
Query: 66 DDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAP 115
D+ +++ + +++ W H ++ ++ + P
Sbjct: 362 FDEIVNNENKDV--------LIEFYAPWCGHCKNLEPKYKELGEKLSKDP 403
>1HV2-A nrPDB
Length = 99
Score = 27.6 bits (59), Expect = 3.9, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 77 MPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIIL 136
+ + S +L+K +E+ ++ + EDDD+ + ++ EM E++L
Sbjct: 44 IELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPE-----------FEIPTEMSLELLL 92
Query: 137 AANYLNI 143
AA+YL+I
Sbjct: 93 AADYLSI 99
>3LN6-A nrPDB
Length = 750
Score = 27.2 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 27 LLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNNGDDDDEDDDEIVMPVPNVRSSV 86
L + L D+ + E D + H S + + D ++P+ V
Sbjct: 428 LSTQLLLFDVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKNGNMTSKDNYIVPLAMANKVV 487
Query: 87 LQKVIEWAEHHRDSNFPDEDDDDSRK 112
+K+++ E H + F DE D
Sbjct: 488 TKKILD--EKHFPTPFGDEFTDRKEA 511
>2VDU-B nrPDB
Length = 450
Score = 26.8 bits (57), Expect = 6.0, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 35/80 (43%)
Query: 5 NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNN 64
NV+ +S + F V E S + KN+ + + +N+ ++ +E + +
Sbjct: 356 NVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVVNNEKSNEFDSAIIQSVQ 415
Query: 65 GDDDDEDDDEIVMPVPNVRS 84
GD + E + P+ NV S
Sbjct: 416 GDSNLVTKKEEIYPLYNVSS 435
>4EEF-G nrPDB
Length = 74
Score = 26.8 bits (57), Expect = 6.0, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 17/22 (77%)
Query: 152 KVVAEMIRGRSPEEIRRTFNIV 173
K VA+ ++GR+PEE+++ + +
Sbjct: 47 KKVAQYVKGRTPEEVKKHYELE 68
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.307 0.115 0.315
Lambda K H
0.267 0.0349 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,170,957
Number of Sequences: 36641
Number of extensions: 272204
Number of successful extensions: 1284
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 858
Number of HSP's gapped (non-prelim): 296
length of query: 194
length of database: 10,336,785
effective HSP length: 92
effective length of query: 102
effective length of database: 6,965,813
effective search space: 710512926
effective search space used: 710512926
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.4 bits)