BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P49789 (147 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 1FIT-A nrPDB 303 2e-83 1EMS-A nrPDB 122 4e-29 5CS2-A nrPDB 110 2e-25 3WO5-A nrPDB 59 6e-10 1Y23-A nrPDB 48 1e-06 6IQ1-A nrPDB 46 5e-06 3OJ7-A nrPDB 45 1e-05 3KSV-A nrPDB 39 6e-04 5WA8-A nrPDB 31 0.16 2C82-A nrPDB 30 0.43 4S17-A nrPDB 29 0.79 1IL2-A nrPDB 27 3.7 >1FIT-A nrPDB Length = 147 Score = 303 bits (776), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 147/147 (100%), Positives = 147/147 (100%) Query: 1 MSFRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQ 60 MSFRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQ Sbjct: 1 MSFRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQ 60 Query: 61 TTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKH 120 TTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKH Sbjct: 61 TTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKH 120 Query: 121 DKEDFPASWRSEEEMAAEAAALRVYFQ 147 DKEDFPASWRSEEEMAAEAAALRVYFQ Sbjct: 121 DKEDFPASWRSEEEMAAEAAALRVYFQ 147 >1EMS-A nrPDB Length = 440 Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 69/142 (48%), Positives = 86/142 (60%), Gaps = 2/142 (1%) Query: 2 SFRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQT 61 +F + I +F T SF VN KPV GHVLV P R V R DL E ADLF Sbjct: 298 GLKFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIV 357 Query: 62 TQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKHD 121 ++V ++EKH + TS T +QDG +AGQTV HVH+H+LPR+AGDF N+ IY++L HD Sbjct: 358 AKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRRAGDFGDNE-IYQKLASHD 416 Query: 122 KEDFPASWRSEEEMAAEAAALR 143 KE RS E+MA EA R Sbjct: 417 KEP-ERKPRSNEQMAEEAVVYR 437 >5CS2-A nrPDB Length = 201 Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 29/174 (16%) Query: 3 FRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTT 62 + FG + I VF+ T+ S+ VN KP++PGH+L+ L+ + ++DL +E+ D+ Sbjct: 23 YEFGIYEIDKREVFITTKYSYGFVNNKPLLPGHILLTTLKKKKHYNDLDIEEIIDINLLC 82 Query: 63 QRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKHD- 121 + ++ F+ T + ++QDG EAGQTV HVH+H++PRK D+ ND+IY ++ K + Sbjct: 83 NFMCYIMGNLFNTTDFSIAIQDGKEAGQTVDHVHIHIIPRKINDYKNNDNIYNDMNKINL 142 Query: 122 ----------------------------KEDFPASWRSEEEMAAEAAALRVYFQ 147 E+F S RS E+M EA ++ Y Sbjct: 143 GYGKNIICNSCNNTINVCSQNEIERNFKLEEFNTSIRSIEQMEEEANLIKSYIN 196 >3WO5-A nrPDB Length = 218 Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 13 SVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKH 72 +V + +L +A++N P PGH++V P R V DL E A+L TQ+ V++ Sbjct: 84 GLVVARGKLVYAVLNLYPYNPGHLMVVPYRRVSELEDLTDLESAELMAFTQKAIRVIKNV 143 Query: 73 FHGTSLTFSMQDGPEA-GQTVKHVHVHVLPRKAGD 106 + G A GQ +H+HVHV+PR GD Sbjct: 144 SRPHGFNVGLNLGTSAGGQLAEHLHVHVVPRWGGD 178 >1Y23-A nrPDB Length = 145 Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 40/91 (43%) Query: 12 PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEK 71 PS + E A ++ V GH LV P +E ++ + F ++ + Sbjct: 18 PSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRD 77 Query: 72 HFHGTSLTFSMQDGPEAGQTVKHVHVHVLPR 102 F L +G +AGQ+V H H+H++PR Sbjct: 78 EFEPIGLNTLNNNGEKAGQSVFHYHMHIIPR 108 >6IQ1-A nrPDB Length = 160 Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 21/135 (15%) Query: 12 PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEK 71 PS ++T +++ ++ +P+ HVL+ P + H++ D ++D+ +++ V++ Sbjct: 18 PSFKLIETAKTYSFLDIQPIAEAHVLIIPKHHGAKLHNIPDDYLSDILPVVKKLTKVLKL 77 Query: 72 HFH----GTSLTFSMQDGPEAGQTVKHVHVHVLPRK-------------AGDFHR----N 110 + G +G A Q V HVH H++P+K A DF + + Sbjct: 78 DENNTPEGEGYNVLQNNGRIAHQVVDHVHFHLIPKKDEATGLGVGWPAEATDFDKLGKLH 137 Query: 111 DSIYEELQKHDKEDF 125 + + EEL K D+E Sbjct: 138 EKLKEELAKVDEEKL 152 >3OJ7-A nrPDB Length = 117 Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 3/93 (3%) Query: 12 PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEK 71 PS + + + FA + P+ P H+LV P + + +++ + A + + +V + +K Sbjct: 20 PSTIVYEDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEENEAFIGKVLYKVSLIGKK 79 Query: 72 HF-HGTSLTFSMQDGPEAGQTVKHVHVHVLPRK 103 G + ++ G +AGQTVKH+H H+L K Sbjct: 80 ECPEGYRVVNNI--GEDAGQTVKHIHFHILGGK 110 >3KSV-A nrPDB Length = 149 Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 38/91 (41%) Query: 12 PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEK 71 P +T + A ++ P+ GH+LV P H+L ++ AD+ + V Sbjct: 24 PCAKVAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGVLLAKASRAVAG 83 Query: 72 HFHGTSLTFSMQDGPEAGQTVKHVHVHVLPR 102 +G A Q V HVH H++P+ Sbjct: 84 PDGSMQYNVLQNNGSLAHQEVPHVHFHIIPK 114 >5WA8-A nrPDB Length = 129 Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 6/100 (6%) Query: 5 FGQHLIK--PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTT 62 FG+ + K P+ + + + A + P P H LV P + + + + D+ L Sbjct: 22 FGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQI-SVAEDDDESLLGHL 80 Query: 63 QRVGTVVEKHFHGTSLTFSM--QDGPEAGQTVKHVHVHVL 100 VG G + + M +G + GQ+V HV++HVL Sbjct: 81 MIVGKKCAADL-GLNKGYRMVVNEGSDGGQSVYHVNLHVL 119 >2C82-A nrPDB Length = 413 Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 14/73 (19%) Query: 5 FGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVC------PLRPVERFHD-----LR-- 51 G ++P++ LKT AL N++ +V G LV + PV+ H LR Sbjct: 105 VGALGLRPTLAALKTGARLALANKESLVAGGSLVLRAARPGQIVPVDSEHSALAQCLRGG 164 Query: 52 -PDEVADLFQTTQ 63 PDEVA L T Sbjct: 165 TPDEVAKLVLTAS 177 >4S17-A nrPDB Length = 481 Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust. Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 4/35 (11%) Query: 40 PLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFH 74 P+ P++ DLR D VA+L Q+VG ++E+ H Sbjct: 192 PVPPIDHTQDLRDDMVANL----QKVGLILERSHH 222 >1IL2-A nrPDB Length = 590 Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Query: 22 SFALVNRKPVVP---GHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEK 71 S ++NR V+P HV R R+ DLR E+A +T ++ ++V + Sbjct: 98 SLTIINRADVLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRR 150 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 1FIT-A nrPDB 209 5e-55 1EMS-A nrPDB 194 8e-51 5CS2-A nrPDB 176 2e-45 6IQ1-A nrPDB 127 2e-30 3KSV-A nrPDB 126 4e-30 3WO5-A nrPDB 121 9e-29 1Y23-A nrPDB 121 1e-28 3OJ7-A nrPDB 116 4e-27 Sequences not found previously or not previously below threshold: 5WA8-A nrPDB 70 4e-13 3N1S-A nrPDB 54 2e-08 1HXP-A nrPDB 45 1e-05 6GQD-A nrPDB 43 6e-05 2Q4H-A nrPDB 37 0.004 4I5W-A nrPDB 34 0.032 6ID1-U nrPDB 31 0.18 3T20-A nrPDB 30 0.56 1DDZ-A nrPDB 28 1.6 2QJF-A nrPDB 27 2.3 6G2J-E nrPDB 27 2.5 5C2I-A nrPDB 27 4.0 6HIV-CJ nrPDB 26 5.1 5LC5-E nrPDB 26 6.0 >1FIT-A nrPDB Length = 147 Score = 209 bits (531), Expect = 5e-55, Method: Composition-based stats. Identities = 147/147 (100%), Positives = 147/147 (100%) Query: 1 MSFRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQ 60 MSFRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQ Sbjct: 1 MSFRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQ 60 Query: 61 TTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKH 120 TTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKH Sbjct: 61 TTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKH 120 Query: 121 DKEDFPASWRSEEEMAAEAAALRVYFQ 147 DKEDFPASWRSEEEMAAEAAALRVYFQ Sbjct: 121 DKEDFPASWRSEEEMAAEAAALRVYFQ 147 >1EMS-A nrPDB Length = 440 Score = 194 bits (494), Expect = 8e-51, Method: Composition-based stats. Identities = 69/142 (48%), Positives = 86/142 (60%), Gaps = 2/142 (1%) Query: 2 SFRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQT 61 +F + I +F T SF VN KPV GHVLV P R V R DL E ADLF Sbjct: 298 GLKFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIV 357 Query: 62 TQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKHD 121 ++V ++EKH + TS T +QDG +AGQTV HVH+H+LPR+AGDF N+ IY++L HD Sbjct: 358 AKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRRAGDFGDNE-IYQKLASHD 416 Query: 122 KEDFPASWRSEEEMAAEAAALR 143 KE RS E+MA EA R Sbjct: 417 KEP-ERKPRSNEQMAEEAVVYR 437 >5CS2-A nrPDB Length = 201 Score = 176 bits (447), Expect = 2e-45, Method: Composition-based stats. Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 29/174 (16%) Query: 3 FRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTT 62 + FG + I VF+ T+ S+ VN KP++PGH+L+ L+ + ++DL +E+ D+ Sbjct: 23 YEFGIYEIDKREVFITTKYSYGFVNNKPLLPGHILLTTLKKKKHYNDLDIEEIIDINLLC 82 Query: 63 QRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKHD- 121 + ++ F+ T + ++QDG EAGQTV HVH+H++PRK D+ ND+IY ++ K + Sbjct: 83 NFMCYIMGNLFNTTDFSIAIQDGKEAGQTVDHVHIHIIPRKINDYKNNDNIYNDMNKINL 142 Query: 122 ----------------------------KEDFPASWRSEEEMAAEAAALRVYFQ 147 E+F S RS E+M EA ++ Y Sbjct: 143 GYGKNIICNSCNNTINVCSQNEIERNFKLEEFNTSIRSIEQMEEEANLIKSYIN 196 >6IQ1-A nrPDB Length = 160 Score = 127 bits (319), Expect = 2e-30, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 21/135 (15%) Query: 12 PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEK 71 PS ++T +++ ++ +P+ HVL+ P + H++ D ++D+ +++ V++ Sbjct: 18 PSFKLIETAKTYSFLDIQPIAEAHVLIIPKHHGAKLHNIPDDYLSDILPVVKKLTKVLKL 77 Query: 72 HFH----GTSLTFSMQDGPEAGQTVKHVHVHVLPRK-------------AGDFHR----N 110 + G +G A Q V HVH H++P+K A DF + + Sbjct: 78 DENNTPEGEGYNVLQNNGRIAHQVVDHVHFHLIPKKDEATGLGVGWPAEATDFDKLGKLH 137 Query: 111 DSIYEELQKHDKEDF 125 + + EEL K D+E Sbjct: 138 EKLKEELAKVDEEKL 152 >3KSV-A nrPDB Length = 149 Score = 126 bits (316), Expect = 4e-30, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 3/127 (2%) Query: 12 PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEK 71 P +T + A ++ P+ GH+LV P H+L ++ AD+ + V Sbjct: 24 PCAKVAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGVLLAKASRAVAG 83 Query: 72 HFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKHDKEDF-PASWR 130 +G A Q V HVH H++P+ D I + K ++ + R Sbjct: 84 PDGSMQYNVLQNNGSLAHQEVPHVHFHIIPK--TDEKTGLKIGWDTVKVASDELAEDAKR 141 Query: 131 SEEEMAA 137 E +A Sbjct: 142 YSEAIAK 148 >3WO5-A nrPDB Length = 218 Score = 121 bits (304), Expect = 9e-29, Method: Composition-based stats. Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 13 SVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKH 72 +V + +L +A++N P PGH++V P R V DL E A+L TQ+ V++ Sbjct: 84 GLVVARGKLVYAVLNLYPYNPGHLMVVPYRRVSELEDLTDLESAELMAFTQKAIRVIKNV 143 Query: 73 FHGTSLTFSMQDGPEA-GQTVKHVHVHVLPRKAGD 106 + G A GQ +H+HVHV+PR GD Sbjct: 144 SRPHGFNVGLNLGTSAGGQLAEHLHVHVVPRWGGD 178 >1Y23-A nrPDB Length = 145 Score = 121 bits (303), Expect = 1e-28, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 40/93 (43%) Query: 12 PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEK 71 PS + E A ++ V GH LV P +E ++ + F ++ + Sbjct: 18 PSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRD 77 Query: 72 HFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKA 104 F L +G +AGQ+V H H+H++PR Sbjct: 78 EFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYG 110 >3OJ7-A nrPDB Length = 117 Score = 116 bits (290), Expect = 4e-27, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 1/98 (1%) Query: 12 PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEK 71 PS + + + FA + P+ P H+LV P + + +++ + A + + +V + +K Sbjct: 20 PSTIVYEDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEENEAFIGKVLYKVSLIGKK 79 Query: 72 HFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHR 109 G +AGQTVKH+H H+L K + + Sbjct: 80 EC-PEGYRVVNNIGEDAGQTVKHIHFHILGGKKLAWDK 116 >5WA8-A nrPDB Length = 129 Score = 69.7 bits (169), Expect = 4e-13, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 36/92 (39%) Query: 12 PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEK 71 P+ + + + A + P P H LV P + + + D+ + L Sbjct: 31 PAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAAD 90 Query: 72 HFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRK 103 + +G + GQ+V HV++HVL + Sbjct: 91 LGLNKGYRMVVNEGSDGGQSVYHVNLHVLGGR 122 >3N1S-A nrPDB Length = 119 Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 1/93 (1%) Query: 12 PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEK 71 PS + + +L A + P P H+L+ P + +D+ + L + + E+ Sbjct: 16 PSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQ 75 Query: 72 HFHGT-SLTFSMQDGPEAGQTVKHVHVHVLPRK 103 M GQ V H+H+H+L + Sbjct: 76 EGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGR 108 >1HXP-A nrPDB Length = 348 Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 3/98 (3%) Query: 7 QHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVG 66 + L S ++TE A+V P L+ P V R DL + +DL +++ Sbjct: 204 RELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLT 263 Query: 67 TVVEKHFH-GTSLTFSMQDGPEAGQTVKH--VHVHVLP 101 + + F + P G+ +H +H H P Sbjct: 264 SRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHAHFYP 301 >6GQD-A nrPDB Length = 380 Score = 42.8 bits (99), Expect = 6e-05, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 8/102 (7%) Query: 7 QHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVG 66 Q L++ + L +E LV P L+ P R V R +L P E DL +++ Sbjct: 225 QELLRKERLVLTSEHWLVLVPFWATWPYQTLLLPRRHVRRLPELTPAERDDLASIMKKLL 284 Query: 67 TVVEKHFHGTSLTFSMQ-----DGPEAGQTVKH--VHVHVLP 101 T + F TS +SM G EAG H +H H P Sbjct: 285 TKYDNLFE-TSFPYSMGWHGAPTGSEAGANWDHWQLHAHYYP 325 >2Q4H-A nrPDB Length = 351 Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 7/93 (7%) Query: 20 ELSFALVNRKPVV---PGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGT 76 + S V+ P P + + P FH L + DL + + + K + Sbjct: 229 DESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDP 288 Query: 77 SLTFSMQDGP----EAGQTVKHVHVHVLPRKAG 105 + + P E+ H + ++P+ +G Sbjct: 289 PYNYMIHTSPLKVTESQLPYTHWFLQIVPQLSG 321 Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 8/86 (9%) Query: 11 KPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVE 70 +P +T + F + P H + + D+ P + D+ ++ + Sbjct: 109 QPETGTSRTIVGFGFHDVVIESPVHSI--------QLSDIDPVGIGDILIAYKKRINQIA 160 Query: 71 KHFHGTSLTFSMQDGPEAGQTVKHVH 96 +H + G AG ++ H H Sbjct: 161 QHDSINYIQVFKNQGASAGASMSHSH 186 >4I5W-A nrPDB Length = 333 Score = 33.5 bits (75), Expect = 0.032, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 2/87 (2%) Query: 25 LVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQD 84 L+N+ PVVP H L+ ++ L P ++ + + + Sbjct: 98 LLNKFPVVPEHSLLVTSEFKDQRSALTPSDLMTAYNVLCSLQGDKDDDVTCERYLVFYNC 157 Query: 85 GPEAGQTVKHVHVHV--LPRKAGDFHR 109 GP +G + H H+ + +P K F Sbjct: 158 GPHSGSSQDHKHLQIMQMPEKFIPFQD 184 >6ID1-U nrPDB Length = 894 Score = 31.2 bits (69), Expect = 0.18, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 3/105 (2%) Query: 3 FRFGQHLIKPSVVFLKTELSFALV-NRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQT 61 + F ++ + + N + + GH L+ PL+ L D ++ Sbjct: 677 YCFDSSQFPKHLIVAIGVKVYLCLPNVRSLTEGHCLIVPLQHHRAATLLDEDIWEEIQMF 736 Query: 62 TQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGD 106 + + + E G F + Q LP++ GD Sbjct: 737 RKSLVKMFED--KGLDCIFLETNMSMKKQYHMVYECIPLPKEVGD 779 >3T20-A nrPDB Length = 399 Score = 29.7 bits (65), Expect = 0.56, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 1/77 (1%) Query: 50 LRPDEVADLFQTTQRVGTV-VEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFH 108 L E+ DL T R+ + L + ++G AG + H + L K D Sbjct: 134 LTSKEIKDLGFTAGRLEKTKIRDSSDSEDLALNDKNGRFAGVSADHFDLGGLDYKLTDQL 193 Query: 109 RNDSIYEELQKHDKEDF 125 Y LQ ++ F Sbjct: 194 TASYHYSNLQDVYRQHF 210 >1DDZ-A nrPDB Length = 496 Score = 28.1 bits (61), Expect = 1.6, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 15/28 (53%) Query: 100 LPRKAGDFHRNDSIYEELQKHDKEDFPA 127 +P K+ F N++ +E+ K D E F Sbjct: 33 MPGKSNIFANNEAWRQEMLKQDPEFFNR 60 >2QJF-A nrPDB Length = 405 Score = 27.4 bits (59), Expect = 2.3, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 16/46 (34%) Query: 3 FRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFH 48 +R +K + + FA R PV GH L+ + Sbjct: 177 YRLTPTELKQKFKDMNADAVFAFQLRNPVHNGHALLMQDTHKQLLE 222 >6G2J-E nrPDB Length = 248 Score = 27.4 bits (59), Expect = 2.5, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 17/114 (14%) Query: 12 PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEK 71 P + + + + NRKPV H+ VC P LR + + +T QR + Sbjct: 107 PPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCM----LRDSDS--ILETLQRKLGIKVG 160 Query: 72 HFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKHDKEDF 125 L ++ G V V + ND+ YE+L D E+ Sbjct: 161 ETTPDKLFTLIEV-ECLGACVNAPMVQI----------NDNYYEDLTPKDIEEI 203 >5C2I-A nrPDB Length = 468 Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 3/80 (3%) Query: 50 LRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHV-HVLPRKAGDFH 108 + D++ DL Q ++ + + +AGQ ++H H + + F Sbjct: 154 IADDDIVDLLQIVNQITQKLRQIAEIVHREDGFILRNQAGQIIEHFGFVHGVSQPL--FM 211 Query: 109 RNDSIYEELQKHDKEDFPAS 128 + D + E + D + + Sbjct: 212 KRDVVRERVNNCDFDKWDPK 231 >6HIV-CJ nrPDB Length = 817 Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 97 VHVLPRKAGDFHRNDSIYEELQKHDKEDFPAS 128 +H +P + + H ++ ++L + E FP S Sbjct: 780 LHSIPVQQLEMHHHEKDLQDLPFINHEQFPRS 811 >5LC5-E nrPDB Length = 249 Score = 26.2 bits (56), Expect = 6.0, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 17/114 (14%) Query: 12 PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEK 71 P + + + + NRKPV H+ VC P + E +++G V + Sbjct: 108 PPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQ-----KKLGIKVGE 162 Query: 72 HFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKHDKEDF 125 T + A V + ND+ YE+L D E+ Sbjct: 163 TTPDKLFTLIEVECLGACVNAPMVQI------------NDNYYEDLTPKDIEEI 204 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.309 0.131 0.332 Lambda K H 0.267 0.0402 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,525,819 Number of Sequences: 36641 Number of extensions: 198379 Number of successful extensions: 562 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 513 Number of HSP's gapped (non-prelim): 43 length of query: 147 length of database: 10,336,785 effective HSP length: 88 effective length of query: 59 effective length of database: 7,112,377 effective search space: 419630243 effective search space used: 419630243 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 54 (25.4 bits)