BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P49643 (509 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 5EXR-B nrPDB 1047 0.0 4BPU-B nrPDB 509 e-145 4BPX-B nrPDB 474 e-134 3L9Q-A nrPDB 410 e-115 3LGB-A nrPDB 153 2e-37 4P22-A nrPDB 32 0.89 3PLN-A nrPDB 30 1.8 4LZZ-A nrPDB 30 1.9 1NY5-A nrPDB 30 2.1 4CCA-A nrPDB 30 2.8 5HMQ-A nrPDB 29 3.8 4L4U-A nrPDB 29 5.7 1X0M-A nrPDB 28 7.1 3AV7-A nrPDB 28 7.5 >5EXR-B nrPDB Length = 509 Score = 1047 bits (2707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 509/509 (100%), Positives = 509/509 (100%) Query: 1 MEFSGRKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLG 60 MEFSGRKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLG Sbjct: 1 MEFSGRKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLG 60 Query: 61 VSYVKGTEQYQSKLESELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWF 120 VSYVKGTEQYQSKLESELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWF Sbjct: 61 VSYVKGTEQYQSKLESELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWF 120 Query: 121 IQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGF 180 IQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGF Sbjct: 121 IQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGF 180 Query: 181 ESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAV 240 ESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAV Sbjct: 181 ESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAV 240 Query: 241 QSDERLQPLLNHLSHSYTGQDYSTQGNVGKISLDQIDLLSTKSFPPCMRQLHKALRENHH 300 QSDERLQPLLNHLSHSYTGQDYSTQGNVGKISLDQIDLLSTKSFPPCMRQLHKALRENHH Sbjct: 241 QSDERLQPLLNHLSHSYTGQDYSTQGNVGKISLDQIDLLSTKSFPPCMRQLHKALRENHH 300 Query: 301 LRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIKGKMDPDKFDKGYSYNIRHSFGKEGKRT 360 LRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIKGKMDPDKFDKGYSYNIRHSFGKEGKRT Sbjct: 301 LRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIKGKMDPDKFDKGYSYNIRHSFGKEGKRT 360 Query: 361 DYTPFSCLKIILSNPPSQGDYHGCPFRHSDPELLKQKLQSYKISPGGISQILDLVKGTHY 420 DYTPFSCLKIILSNPPSQGDYHGCPFRHSDPELLKQKLQSYKISPGGISQILDLVKGTHY Sbjct: 361 DYTPFSCLKIILSNPPSQGDYHGCPFRHSDPELLKQKLQSYKISPGGISQILDLVKGTHY 420 Query: 421 QVACQKYFEMIHNVDDCGFSLNHPNQFFCESQRILNGGKDIKKEPIQPETPQPKPSVQKT 480 QVACQKYFEMIHNVDDCGFSLNHPNQFFCESQRILNGGKDIKKEPIQPETPQPKPSVQKT Sbjct: 421 QVACQKYFEMIHNVDDCGFSLNHPNQFFCESQRILNGGKDIKKEPIQPETPQPKPSVQKT 480 Query: 481 KDASSALASLNSSLEMDMEGLEDYFSEDS 509 KDASSALASLNSSLEMDMEGLEDYFSEDS Sbjct: 481 KDASSALASLNSSLEMDMEGLEDYFSEDS 509 >4BPU-B nrPDB Length = 253 Score = 509 bits (1312), Expect = e-145, Method: Compositional matrix adjust. Identities = 253/253 (100%), Positives = 253/253 (100%) Query: 1 MEFSGRKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLG 60 MEFSGRKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLG Sbjct: 1 MEFSGRKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLG 60 Query: 61 VSYVKGTEQYQSKLESELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWF 120 VSYVKGTEQYQSKLESELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWF Sbjct: 61 VSYVKGTEQYQSKLESELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWF 120 Query: 121 IQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGF 180 IQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGF Sbjct: 121 IQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGF 180 Query: 181 ESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAV 240 ESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAV Sbjct: 181 ESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAV 240 Query: 241 QSDERLQPLLNHL 253 QSDERLQPLLNHL Sbjct: 241 QSDERLQPLLNHL 253 >4BPX-B nrPDB Length = 269 Score = 474 bits (1219), Expect = e-134, Method: Compositional matrix adjust. Identities = 235/235 (100%), Positives = 235/235 (100%) Query: 19 NASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESEL 78 NASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESEL Sbjct: 35 NASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESEL 94 Query: 79 RKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKD 138 RKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKD Sbjct: 95 RKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKD 154 Query: 139 KIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGFESIYKIPFADALDLFRGR 198 KIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGFESIYKIPFADALDLFRGR Sbjct: 155 KIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGFESIYKIPFADALDLFRGR 214 Query: 199 KVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAVQSDERLQPLLNHL 253 KVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAVQSDERLQPLLNHL Sbjct: 215 KVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAVQSDERLQPLLNHL 269 >3L9Q-A nrPDB Length = 195 Score = 410 bits (1053), Expect = e-115, Method: Compositional matrix adjust. Identities = 193/193 (100%), Positives = 193/193 (100%) Query: 272 SLDQIDLLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQFWKQEF 331 SLDQIDLLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQFWKQEF Sbjct: 3 SLDQIDLLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQFWKQEF 62 Query: 332 IKGKMDPDKFDKGYSYNIRHSFGKEGKRTDYTPFSCLKIILSNPPSQGDYHGCPFRHSDP 391 IKGKMDPDKFDKGYSYNIRHSFGKEGKRTDYTPFSCLKIILSNPPSQGDYHGCPFRHSDP Sbjct: 63 IKGKMDPDKFDKGYSYNIRHSFGKEGKRTDYTPFSCLKIILSNPPSQGDYHGCPFRHSDP 122 Query: 392 ELLKQKLQSYKISPGGISQILDLVKGTHYQVACQKYFEMIHNVDDCGFSLNHPNQFFCES 451 ELLKQKLQSYKISPGGISQILDLVKGTHYQVACQKYFEMIHNVDDCGFSLNHPNQFFCES Sbjct: 123 ELLKQKLQSYKISPGGISQILDLVKGTHYQVACQKYFEMIHNVDDCGFSLNHPNQFFCES 182 Query: 452 QRILNGGKDIKKE 464 QRILNGGKDIKKE Sbjct: 183 QRILNGGKDIKKE 195 >3LGB-A nrPDB Length = 194 Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 73/180 (40%), Positives = 108/180 (60%), Gaps = 8/180 (4%) Query: 281 TKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIKGKMDPDK 340 + ++P C++ L + L++NHHLR+ GR Q LFLKGIGL+ ++AL+FW + F M +K Sbjct: 15 SSNYPLCIKNLMEGLKKNHHLRYYGRQQLSLFLKGIGLSADEALKFWSEAFTN--MTMEK 72 Query: 341 FDKGYSYNIRHSFGKEGKRTDYTPFSCLKIILSNPPSQGDYHGCPFRHSDPELLKQKLQS 400 F+K Y Y+ RH++G EG R +Y P+ C I+ P +GDYHGCPFR E L +L+S Sbjct: 73 FNKEYRYSFRHNYGLEGNRINYKPWDCHTILSKPRPGRGDYHGCPFRDWSHERLSAELRS 132 Query: 401 YKISPGGISQILDLVKGTHYQVACQKYFEMIHNVDDCGFSLN------HPNQFFCESQRI 454 K++ I +LD + Y +AC K FEM HN + HPN +F S+++ Sbjct: 133 MKLTQAQIISVLDSCQKGEYTIACTKVFEMTHNSASADLEIGEQTHIAHPNLYFERSRQL 192 >4P22-A nrPDB Length = 446 Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 34/67 (50%) Query: 226 LSKALALTARSLPAVQSDERLQPLLNHLSHSYTGQDYSTQGNVGKISLDQIDLLSTKSFP 285 ++ A A+ AR+LPAVQ + + L+ L++ G +G ++ ++ + F Sbjct: 366 VALAQAVNARALPAVQQNNLDEDLIRKLAYVAAGDLAPINAFIGGLAAQEVMKACSGKFM 425 Query: 286 PCMRQLH 292 P M+ L+ Sbjct: 426 PIMQWLY 432 >3PLN-A nrPDB Length = 424 Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust. Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 120 FIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQE-IVASSPS 172 +Q ++D+L + S + +IQ++L + L F A +D+ R + ++ ++P+ Sbjct: 66 IVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNADYVIIATPT 119 >4LZZ-A nrPDB Length = 268 Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 25/157 (15%) Query: 158 EKTLREQEIVASSPSLSGLKLGFESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAI 217 EK L+E+E V SP + + E I KI A+ L G E G K++VA Sbjct: 12 EKDLKEEEYVFESPKMKEI---LEKIKKISCAECPVLITG-----ESGVG----KEVVAR 59 Query: 218 ILNEFRAKLSKA-LALTARSLPAVQSDERLQPLLNHLSHSYTGQDYSTQG-----NVGKI 271 ++++ + + +AL S+P D L + ++TG S +G + G + Sbjct: 60 LIHKLSDRSKEPFVALNVASIP---RDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTL 116 Query: 272 SLDQIDLLSTKSFPPCMRQLHKALRENHHLRHGGRMQ 308 LD+I LS ++ +L + + R GGR + Sbjct: 117 FLDEIGELSLEA----QAKLLRVIESGKFYRLGGRKE 149 >1NY5-A nrPDB Length = 387 Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 25/168 (14%) Query: 158 EKTLREQEIVASSPSLSGLKLGFESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAI 217 EK L+E+E V SP + + E I KI A+ L G E G K++VA Sbjct: 131 EKDLKEEEYVFESPKMKEI---LEKIKKISCAECPVLITG-----ESGVG----KEVVAR 178 Query: 218 ILNEFRAKLSKA-LALTARSLPAVQSDERLQPLLNHLSHSYTGQDYSTQG-----NVGKI 271 ++++ + + +AL S+P D L + ++TG S +G + G + Sbjct: 179 LIHKLSDRSKEPFVALNVASIP---RDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTL 235 Query: 272 SLDQIDLLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLT 319 LD+I LS ++ +R + R GGR + + ++ + T Sbjct: 236 FLDEIGELSLEAQAKLLR----VIESGKFYRLGGRKEIEVNVRILAAT 279 >4CCA-A nrPDB Length = 598 Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 396 QKLQSYKISPGGISQILDLVKGTHYQVACQKYFEMIHNVDDCGFSLNHPNQFFCESQRIL 455 ++L + K + +SQIL K YQ KY +H DDC + C ++ L Sbjct: 319 KRLTTDKANIKDLSQILK--KMPQYQKELNKYSTHLHLADDCMKHFKGSVEKLCSVEQDL 376 Query: 456 NGGKDIKKEPIQ 467 G D + E I+ Sbjct: 377 AMGSDAEGEKIK 388 >5HMQ-A nrPDB Length = 637 Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust. Identities = 16/70 (22%), Positives = 36/70 (51%) Query: 114 EELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSL 173 E RR +Q+ +D +F ++ + L S +Q +A+ DE+ + + ++ Sbjct: 69 EGCRRDRLQKNLDRAERKFDLMQELGTDLVLVCSNVQADALGDEQLLVDDLRLLGEHAGK 128 Query: 174 SGLKLGFESI 183 GL++G+E++ Sbjct: 129 RGLRIGYEAL 138 >4L4U-A nrPDB Length = 447 Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 25/157 (15%) Query: 158 EKTLREQEIVASSPSLSGLKLGFESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAI 217 EK L+E+E V SP + + E I KI A+ L G E G K++VA Sbjct: 139 EKDLKEEEYVFESPKMKEI---LEKIKKISCAECPVLITG-----ESGVG----KEVVAR 186 Query: 218 ILNEFRAKLSKA-LALTARSLPAVQSDERLQPLLNHLSHSYTGQDYSTQG-----NVGKI 271 ++++ + + +AL S+P D L + ++TG S +G + G + Sbjct: 187 LIHKSSDRSKEPFVALNVASIP---RDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTL 243 Query: 272 SLDQIDLLSTKSFPPCMRQLHKALRENHHLRHGGRMQ 308 LD+I LS ++ +R + R GGR + Sbjct: 244 FLDEIGELSLEAQAKLLR----VIESGKFYRLGGRKE 276 >1X0M-A nrPDB Length = 403 Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 10/72 (13%) Query: 46 AIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLKFSYRENLEDEYEPRRRDHISHFI 105 ID K+L+ GV+YV G Y + +L F+Y + D I I Sbjct: 341 GIDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTYVDE----------DKIMEGI 390 Query: 106 LRLAYCQSEELR 117 RLA EEL+ Sbjct: 391 KRLAETIKEELK 402 >3AV7-A nrPDB Length = 448 Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 10/72 (13%) Query: 46 AIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLKFSYRENLEDEYEPRRRDHISHFI 105 ID K+L+ GV+YV G Y + +L F+Y + D I I Sbjct: 386 GIDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTYVDE----------DKIMEGI 435 Query: 106 LRLAYCQSEELR 117 RLA EEL+ Sbjct: 436 KRLAETIKEELK 447 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 5EXR-B nrPDB 1011 0.0 4BPU-B nrPDB 515 e-146 4BPX-B nrPDB 485 e-137 3L9Q-A nrPDB 372 e-103 3LGB-A nrPDB 316 2e-86 Sequences not found previously or not previously below threshold: 3PLN-A nrPDB 32 0.85 5HMQ-A nrPDB 30 2.1 4WMZ-A nrPDB 30 2.4 4P22-A nrPDB 30 3.6 6QTP-A nrPDB 29 4.3 5BS3-B nrPDB 29 4.3 2XCO-A nrPDB 29 4.3 3AV7-A nrPDB 29 4.5 1X0M-A nrPDB 29 4.5 5MZA-B nrPDB 29 6.1 1Z7Z-I nrPDB 29 6.1 1MQ8-A nrPDB 29 6.1 CONVERGED! >5EXR-B nrPDB Length = 509 Score = 1011 bits (2615), Expect = 0.0, Method: Composition-based stats. Identities = 509/509 (100%), Positives = 509/509 (100%) Query: 1 MEFSGRKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLG 60 MEFSGRKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLG Sbjct: 1 MEFSGRKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLG 60 Query: 61 VSYVKGTEQYQSKLESELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWF 120 VSYVKGTEQYQSKLESELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWF Sbjct: 61 VSYVKGTEQYQSKLESELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWF 120 Query: 121 IQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGF 180 IQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGF Sbjct: 121 IQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGF 180 Query: 181 ESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAV 240 ESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAV Sbjct: 181 ESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAV 240 Query: 241 QSDERLQPLLNHLSHSYTGQDYSTQGNVGKISLDQIDLLSTKSFPPCMRQLHKALRENHH 300 QSDERLQPLLNHLSHSYTGQDYSTQGNVGKISLDQIDLLSTKSFPPCMRQLHKALRENHH Sbjct: 241 QSDERLQPLLNHLSHSYTGQDYSTQGNVGKISLDQIDLLSTKSFPPCMRQLHKALRENHH 300 Query: 301 LRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIKGKMDPDKFDKGYSYNIRHSFGKEGKRT 360 LRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIKGKMDPDKFDKGYSYNIRHSFGKEGKRT Sbjct: 301 LRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIKGKMDPDKFDKGYSYNIRHSFGKEGKRT 360 Query: 361 DYTPFSCLKIILSNPPSQGDYHGCPFRHSDPELLKQKLQSYKISPGGISQILDLVKGTHY 420 DYTPFSCLKIILSNPPSQGDYHGCPFRHSDPELLKQKLQSYKISPGGISQILDLVKGTHY Sbjct: 361 DYTPFSCLKIILSNPPSQGDYHGCPFRHSDPELLKQKLQSYKISPGGISQILDLVKGTHY 420 Query: 421 QVACQKYFEMIHNVDDCGFSLNHPNQFFCESQRILNGGKDIKKEPIQPETPQPKPSVQKT 480 QVACQKYFEMIHNVDDCGFSLNHPNQFFCESQRILNGGKDIKKEPIQPETPQPKPSVQKT Sbjct: 421 QVACQKYFEMIHNVDDCGFSLNHPNQFFCESQRILNGGKDIKKEPIQPETPQPKPSVQKT 480 Query: 481 KDASSALASLNSSLEMDMEGLEDYFSEDS 509 KDASSALASLNSSLEMDMEGLEDYFSEDS Sbjct: 481 KDASSALASLNSSLEMDMEGLEDYFSEDS 509 >4BPU-B nrPDB Length = 253 Score = 515 bits (1327), Expect = e-146, Method: Composition-based stats. Identities = 253/253 (100%), Positives = 253/253 (100%) Query: 1 MEFSGRKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLG 60 MEFSGRKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLG Sbjct: 1 MEFSGRKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLG 60 Query: 61 VSYVKGTEQYQSKLESELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWF 120 VSYVKGTEQYQSKLESELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWF Sbjct: 61 VSYVKGTEQYQSKLESELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWF 120 Query: 121 IQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGF 180 IQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGF Sbjct: 121 IQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGF 180 Query: 181 ESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAV 240 ESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAV Sbjct: 181 ESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAV 240 Query: 241 QSDERLQPLLNHL 253 QSDERLQPLLNHL Sbjct: 241 QSDERLQPLLNHL 253 >4BPX-B nrPDB Length = 269 Score = 485 bits (1249), Expect = e-137, Method: Composition-based stats. Identities = 235/235 (100%), Positives = 235/235 (100%) Query: 19 NASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESEL 78 NASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESEL Sbjct: 35 NASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESEL 94 Query: 79 RKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKD 138 RKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKD Sbjct: 95 RKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKD 154 Query: 139 KIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGFESIYKIPFADALDLFRGR 198 KIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGFESIYKIPFADALDLFRGR Sbjct: 155 KIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGFESIYKIPFADALDLFRGR 214 Query: 199 KVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAVQSDERLQPLLNHL 253 KVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAVQSDERLQPLLNHL Sbjct: 215 KVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAVQSDERLQPLLNHL 269 >3L9Q-A nrPDB Length = 195 Score = 372 bits (954), Expect = e-103, Method: Composition-based stats. Identities = 193/193 (100%), Positives = 193/193 (100%) Query: 272 SLDQIDLLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQFWKQEF 331 SLDQIDLLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQFWKQEF Sbjct: 3 SLDQIDLLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQFWKQEF 62 Query: 332 IKGKMDPDKFDKGYSYNIRHSFGKEGKRTDYTPFSCLKIILSNPPSQGDYHGCPFRHSDP 391 IKGKMDPDKFDKGYSYNIRHSFGKEGKRTDYTPFSCLKIILSNPPSQGDYHGCPFRHSDP Sbjct: 63 IKGKMDPDKFDKGYSYNIRHSFGKEGKRTDYTPFSCLKIILSNPPSQGDYHGCPFRHSDP 122 Query: 392 ELLKQKLQSYKISPGGISQILDLVKGTHYQVACQKYFEMIHNVDDCGFSLNHPNQFFCES 451 ELLKQKLQSYKISPGGISQILDLVKGTHYQVACQKYFEMIHNVDDCGFSLNHPNQFFCES Sbjct: 123 ELLKQKLQSYKISPGGISQILDLVKGTHYQVACQKYFEMIHNVDDCGFSLNHPNQFFCES 182 Query: 452 QRILNGGKDIKKE 464 QRILNGGKDIKKE Sbjct: 183 QRILNGGKDIKKE 195 >3LGB-A nrPDB Length = 194 Score = 316 bits (809), Expect = 2e-86, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 108/180 (60%), Gaps = 8/180 (4%) Query: 281 TKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIKGKMDPDK 340 + ++P C++ L + L++NHHLR+ GR Q LFLKGIGL+ ++AL+FW + F M +K Sbjct: 15 SSNYPLCIKNLMEGLKKNHHLRYYGRQQLSLFLKGIGLSADEALKFWSEAFTN--MTMEK 72 Query: 341 FDKGYSYNIRHSFGKEGKRTDYTPFSCLKIILSNPPSQGDYHGCPFRHSDPELLKQKLQS 400 F+K Y Y+ RH++G EG R +Y P+ C I+ P +GDYHGCPFR E L +L+S Sbjct: 73 FNKEYRYSFRHNYGLEGNRINYKPWDCHTILSKPRPGRGDYHGCPFRDWSHERLSAELRS 132 Query: 401 YKISPGGISQILDLVKGTHYQVACQKYFEMIHNVDDCGFSLN------HPNQFFCESQRI 454 K++ I +LD + Y +AC K FEM HN + HPN +F S+++ Sbjct: 133 MKLTQAQIISVLDSCQKGEYTIACTKVFEMTHNSASADLEIGEQTHIAHPNLYFERSRQL 192 >3PLN-A nrPDB Length = 424 Score = 31.6 bits (70), Expect = 0.85, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 121 IQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQE-IVASSPS 172 +Q ++D+L + S + +IQ++L + L F A +D+ R + ++ ++P+ Sbjct: 67 VQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNADYVIIATPT 119 >5HMQ-A nrPDB Length = 637 Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 36/70 (51%) Query: 114 EELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSL 173 E RR +Q+ +D +F ++ + L S +Q +A+ DE+ + + ++ Sbjct: 69 EGCRRDRLQKNLDRAERKFDLMQELGTDLVLVCSNVQADALGDEQLLVDDLRLLGEHAGK 128 Query: 174 SGLKLGFESI 183 GL++G+E++ Sbjct: 129 RGLRIGYEAL 138 >4WMZ-A nrPDB Length = 539 Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 5/98 (5%) Query: 402 KISPGGISQIL-DLVKGTHYQVACQKYFEMIHNVDDCGFSLNHPNQFFCESQRILNGGKD 460 K++ I+ +L ++ G + A + ++H + + + E R+L+GGK Sbjct: 298 KMTDQEIANLLIGVLMGGQHTSAATSAWILLHLAERPDVQ----QELYEEQMRVLDGGKK 353 Query: 461 IKKEPIQPETPQPKPSVQKTKDASSALASLNSSLEMDM 498 + E P ++++T L SL + DM Sbjct: 354 ELTYDLLQEMPLLNQTIKETLRMHHPLHSLFRKVMKDM 391 >4P22-A nrPDB Length = 446 Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 32/64 (50%) Query: 229 ALALTARSLPAVQSDERLQPLLNHLSHSYTGQDYSTQGNVGKISLDQIDLLSTKSFPPCM 288 A A+ AR+LPAVQ + + L+ L++ G +G ++ ++ + F P M Sbjct: 369 AQAVNARALPAVQQNNLDEDLIRKLAYVAAGDLAPINAFIGGLAAQEVMKACSGKFMPIM 428 Query: 289 RQLH 292 + L+ Sbjct: 429 QWLY 432 >6QTP-A nrPDB Length = 490 Score = 29.2 bits (64), Expect = 4.3, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 15/126 (11%) Query: 27 QFYLQPPSENISLIEFENLAIDRVKLLKS-----------VENLGVSYVKGTEQYQSKLE 75 Q+ L+ + ++E +A+D + + S +E+L + +Q Q+ L+ Sbjct: 367 QYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILD 426 Query: 76 SELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSIL 135 LR+L R+ +E EY ++IS LA EE+ ++ E+ +R RF Sbjct: 427 MRLRRLTGLERDKIEAEYN-ELLNYISELETILA---DEEVLLQLVRDELTEIRDRFGDD 482 Query: 136 PKDKIQ 141 + +IQ Sbjct: 483 RRTEIQ 488 >5BS3-B nrPDB Length = 692 Score = 29.2 bits (64), Expect = 4.3, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 15/126 (11%) Query: 27 QFYLQPPSENISLIEFENLAIDRVKLLKS-----------VENLGVSYVKGTEQYQSKLE 75 Q+ L+ + ++E +A+D + + S +E+L + +Q Q+ L+ Sbjct: 569 QYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILD 628 Query: 76 SELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSIL 135 LR+L R+ +E EY ++IS LA EE+ ++ E+ +R RF Sbjct: 629 MRLRRLTGLERDKIEAEYN-ELLNYISELETILA---DEEVLLQLVRDELTEIRDRFGDD 684 Query: 136 PKDKIQ 141 + +IQ Sbjct: 685 RRTEIQ 690 >2XCO-A nrPDB Length = 726 Score = 29.2 bits (64), Expect = 4.3, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 15/126 (11%) Query: 27 QFYLQPPSENISLIEFENLAIDRVKLLKS-----------VENLGVSYVKGTEQYQSKLE 75 Q+ L+ + ++E +A+D + + S +E+L + +Q Q+ L+ Sbjct: 603 QYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILD 662 Query: 76 SELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSIL 135 LR+L R+ +E EY ++IS LA EE+ ++ E+ +R RF Sbjct: 663 MRLRRLTGLERDKIEAEYN-ELLNYISELETILA---DEEVLLQLVRDELTEIRDRFGDD 718 Query: 136 PKDKIQ 141 + +IQ Sbjct: 719 RRTEIQ 724 >3AV7-A nrPDB Length = 448 Score = 29.2 bits (64), Expect = 4.5, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 10/72 (13%) Query: 46 AIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLKFSYRENLEDEYEPRRRDHISHFI 105 ID K+L+ GV+YV G Y + +L F+Y + D I I Sbjct: 386 GIDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTYVD----------EDKIMEGI 435 Query: 106 LRLAYCQSEELR 117 RLA EEL+ Sbjct: 436 KRLAETIKEELK 447 >1X0M-A nrPDB Length = 403 Score = 29.2 bits (64), Expect = 4.5, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 10/72 (13%) Query: 46 AIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLKFSYRENLEDEYEPRRRDHISHFI 105 ID K+L+ GV+YV G Y + +L F+Y + D I I Sbjct: 341 GIDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTYVD----------EDKIMEGI 390 Query: 106 LRLAYCQSEELR 117 RLA EEL+ Sbjct: 391 KRLAETIKEELK 402 >5MZA-B nrPDB Length = 186 Score = 28.9 bits (63), Expect = 6.1, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%) Query: 454 ILNGGKDIKKEPIQPETPQPKPSVQKTKDASSALASLNSSLEMDMEGLE 502 +L G K++K+EP E + +V +D A S + L++ +GLE Sbjct: 123 LLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLE 171 >1Z7Z-I nrPDB Length = 450 Score = 28.9 bits (63), Expect = 6.1, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%) Query: 454 ILNGGKDIKKEPIQPETPQPKPSVQKTKDASSALASLNSSLEMDMEGLE 502 +L G K++K+EP E + +V +D A S + L++ +GLE Sbjct: 123 LLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLE 171 >1MQ8-A nrPDB Length = 291 Score = 28.9 bits (63), Expect = 6.1, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%) Query: 454 ILNGGKDIKKEPIQPETPQPKPSVQKTKDASSALASLNSSLEMDMEGLE 502 +L G K++K+EP E + +V +D A S + L++ +GLE Sbjct: 123 LLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLE 171 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.316 0.136 0.388 Lambda K H 0.267 0.0420 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,894,463 Number of Sequences: 36641 Number of extensions: 884286 Number of successful extensions: 2455 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 26 Number of HSP's that attempted gapping in prelim test: 2426 Number of HSP's gapped (non-prelim): 55 length of query: 509 length of database: 10,336,785 effective HSP length: 101 effective length of query: 408 effective length of database: 6,636,044 effective search space: 2707505952 effective search space used: 2707505952 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 61 (28.1 bits)