BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P49642 (420 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 4LIK-A nrPDB 800 0.0 4LIM-A nrPDB 245 2e-65 1V33-A nrPDB 54 9e-08 1G71-A nrPDB 53 2e-07 3I44-A nrPDB 31 0.78 6G9C-A nrPDB 29 3.3 2YMB-A nrPDB 28 5.5 2CGE-A nrPDB 28 9.7 >4LIK-A nrPDB Length = 392 Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/408 (95%), Positives = 388/408 (95%), Gaps = 20/408 (4%) Query: 1 METFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSF 60 METFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSF Sbjct: 5 METFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSF 64 Query: 61 NNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRR 120 NNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRR Sbjct: 65 NNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRR 124 Query: 121 CCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSA 180 CCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSA Sbjct: 125 CCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSA 184 Query: 181 VRSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESW 240 VRSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESW Sbjct: 185 VRSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESW 244 Query: 241 DKILALVPETIHDELQQSFQKSHNSLQRWEHLKKVASRYQNNIKNDKYGPWLEWEIMLQY 300 DKILALVPETIHDELQQSFQKSHNSLQRWEHLKKVASRYQNNIKNDKYGPWLEWEIMLQY Sbjct: 245 DKILALVPETIHDELQQSFQKSHNSLQRWEHLKKVASRYQNNIKNDKYGPWLEWEIMLQY 304 Query: 301 CFPRLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISFICRELDAI 360 CFPRLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISFICRELDA Sbjct: 305 CFPRLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISFICRELDA- 363 Query: 361 STNEEEKEENEAESDVKHRTRDYKKTSLAPYVKVFEHFLENLDKSRKG 408 TRDYKKTSLAPYVKVFEHFLENLDKSRKG Sbjct: 364 -------------------TRDYKKTSLAPYVKVFEHFLENLDKSRKG 392 >4LIM-A nrPDB Length = 391 Score = 245 bits (626), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 128/407 (31%), Positives = 221/407 (54%), Gaps = 36/407 (8%) Query: 13 LKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEKEMQK 72 ++ YY+ L+P+ + WLN+ +REF+ + Y RY SFN+ D + +++K Sbjct: 10 MEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDFKAQIEK 69 Query: 73 MNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICPKCW 132 NP + +IGA+Y+ P + +T+ +A EKELVFDIDM DYD R CCS A +C KCW Sbjct: 70 ANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSGAQVCSKCW 129 Query: 133 TLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLV 192 +++A++I + AL+EDFG+K +WV+SGRRG HCWV D+ R L+ R +++Y++++ Sbjct: 130 KFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRNVLDYVNVI 189 Query: 193 KGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWDKILALVPETIH 252 + ++ K++ L HP + +S+ +K +F L Q+ E+ + I L+P Sbjct: 190 R-DRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQH--AIQTLLPALYD 246 Query: 253 DELQQSFQK------SHNSLQRWEHLKKVASRYQNNIKNDKYGPWL---EWEIMLQYCFP 303 +L S +K +S ++W + ++A+ K D + L + +++L +P Sbjct: 247 KQLIDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVLMTLYP 306 Query: 304 RLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISFICRELDAISTN 363 +LD+ V+K HLLK+PF +HP TG + VPID + F P P + + E++ Sbjct: 307 KLDVEVTKQTIHLLKAPFCIHPATGNVCVPID----ESFAPEKAPKLIDLQTEME----- 357 Query: 364 EEEKEENEAESDVKHRTRDYKKTSLAPYVKVFEHFLENLDKSRKGEL 410 + D T+L P++ F+ ++ +L K+ G + Sbjct: 358 ---------------KNNDVSLTALQPFINQFQAYVSSLLKNELGSV 389 >1V33-A nrPDB Length = 366 Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 59/136 (43%), Gaps = 10/136 (7%) Query: 56 RYQSFNNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDY 115 R + + DLE ++ PY + +P + LG ELVFDID D Sbjct: 69 RKNQYTDIRDLEDYIRATAPYAVYSSVALYEKPQEMEGW-LGT------ELVFDIDAKDL 121 Query: 116 DDVRRC-CSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESV 174 +RRC +CP C +R L+E+ GF +YSG RG H V DE Sbjct: 122 P-LRRCEHEPGTVCPICLNDAKEIVRDTVIILREELGFNDIHIIYSG-RGYHIRVLDEWA 179 Query: 175 RKLSSAVRSGIVEYLS 190 KL S R I+ ++S Sbjct: 180 LKLDSKSRERILSFVS 195 >1G71-A nrPDB Length = 347 Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 11/157 (7%) Query: 36 IKNYFQHREFSFTLKDD-IYIRYQSFNNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTV 94 I + + REF F + R +++ DLE ++ +PY AVYS N Sbjct: 28 IVDTLESREFGFDHNGEGPSDRKNQYSDIRDLEDYIRATSPY-----AVYSSVAFYENPR 82 Query: 95 KLGAFQAQEKELVFDIDMTDYDDVRRCC-SSADICPKCWTLMTMAIRIIDRALKEDFGFK 153 ++ ++ E LVFDID D ++RC +CP C + L+E+ GF+ Sbjct: 83 EMEGWRGAE--LVFDIDAKDL-PLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFE 139 Query: 154 HRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLS 190 + VYSG RG H + DE +L S R I+ ++S Sbjct: 140 NIHVVYSG-RGYHIRILDEWALQLDSKSRERILAFIS 175 >3I44-A nrPDB Length = 497 Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 65/174 (37%), Gaps = 21/174 (12%) Query: 89 NQHNTVK-----LGAFQAQEKELVFDIDMTDYDDVRRCCSSADICPKCWTLMTMAIRIID 143 N NT+K LG A DID VR C ++ T M + I D Sbjct: 259 NASNTLKRVCLELGGKGANIIFADADIDALQRG-VRHCFYNSGQSCNAPTRMLVEQAIYD 317 Query: 144 RALKEDFGFKHRLWVYSGRR-GVHCW--VCDESVRKLSSAVRSGIVEYLSLVKGGQDVKK 200 +A+K + V G + G H V E K+ ++SGI E +LV GG + Sbjct: 318 KAIKTAKDIAEKTQVGPGHQTGNHIGPVVSKEQYDKIQDLIQSGIDEGATLVTGGTGLPM 377 Query: 201 KVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWDKILALVPETIHDE 254 + + P + + + F E E + +L+L+P DE Sbjct: 378 GMERGYYVRPTVFADVKPHMRIFRE------------EIFGPVLSLLPFNTEDE 419 >6G9C-A nrPDB Length = 495 Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%) Query: 217 NIIKKYFEEYALVNQDILENKESWDKILALVPETIHDELQQSFQKSHNSLQRWEH----L 272 N+ + F +A +N D ++ W+ I L P + + Q K SL W Sbjct: 60 NLCEYIFYAFAKLNDDFTVDQFEWNDIDVLYPGVMKQKSSQPDLKVLLSLGGWNAGTATF 119 Query: 273 KKVASRYQNNIK 284 KK+A+ Y N K Sbjct: 120 KKMAATYSNRAK 131 >2YMB-A nrPDB Length = 257 Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Query: 182 RSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEE 225 + GI L ++KG +D K+ +L EKI ++ ++ N IKKY ++ Sbjct: 47 QEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAEN-IKKYLDQ 89 >2CGE-A nrPDB Length = 405 Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 26/196 (13%) Query: 185 IVEYLSLVKGGQD-------VKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENK 237 I E+LS VKG D + +++ KI IRK NI+KK E + +I E+ Sbjct: 86 IPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRK--NIVKKLIEAF----NEIAEDS 139 Query: 238 ESWDKILALVPETIHDELQQSFQKSHNSLQRWEHLKKVASRYQNNIKNDKYGPWLEWEIM 297 E ++K + + I + H Q L K+ RY + D+ ++ Sbjct: 140 EQFEKFYSAFSKNIKLGV-------HEDTQNRAALAKLL-RYNSTKSVDELTSLTDYVTR 191 Query: 298 LQYCFPRLDINVSKGINHLLKSPFSVHPKTGRISV-----PIDLQKVDQFDPFTVPTISF 352 + + + + + KSPF K V PID Q F T+ Sbjct: 192 MPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVD 251 Query: 353 ICRELDAISTNEEEKE 368 I ++ + T+EE+ E Sbjct: 252 ITKDFELEETDEEKAE 267 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 4LIK-A nrPDB 664 0.0 4LIM-A nrPDB 540 e-154 1V33-A nrPDB 201 4e-52 1G71-A nrPDB 199 2e-51 Sequences not found previously or not previously below threshold: 5OFN-A nrPDB 71 9e-13 2R46-A nrPDB 32 0.67 6GMF-A nrPDB 31 0.73 1F5V-A nrPDB 31 0.92 4TTR-A nrPDB 31 1.0 2VSX-A nrPDB 31 1.5 2R2P-A nrPDB 30 1.7 3G4D-A nrPDB 29 3.6 5NGU-A nrPDB 29 4.2 5FXI-A nrPDB 29 4.4 >4LIK-A nrPDB Length = 392 Score = 664 bits (1712), Expect = 0.0, Method: Composition-based stats. Identities = 388/408 (95%), Positives = 388/408 (95%), Gaps = 20/408 (4%) Query: 1 METFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSF 60 METFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSF Sbjct: 5 METFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSF 64 Query: 61 NNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRR 120 NNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRR Sbjct: 65 NNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRR 124 Query: 121 CCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSA 180 CCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSA Sbjct: 125 CCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSA 184 Query: 181 VRSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESW 240 VRSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESW Sbjct: 185 VRSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESW 244 Query: 241 DKILALVPETIHDELQQSFQKSHNSLQRWEHLKKVASRYQNNIKNDKYGPWLEWEIMLQY 300 DKILALVPETIHDELQQSFQKSHNSLQRWEHLKKVASRYQNNIKNDKYGPWLEWEIMLQY Sbjct: 245 DKILALVPETIHDELQQSFQKSHNSLQRWEHLKKVASRYQNNIKNDKYGPWLEWEIMLQY 304 Query: 301 CFPRLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISFICRELDAI 360 CFPRLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISFICRELDA Sbjct: 305 CFPRLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISFICRELDA- 363 Query: 361 STNEEEKEENEAESDVKHRTRDYKKTSLAPYVKVFEHFLENLDKSRKG 408 TRDYKKTSLAPYVKVFEHFLENLDKSRKG Sbjct: 364 -------------------TRDYKKTSLAPYVKVFEHFLENLDKSRKG 392 >4LIM-A nrPDB Length = 391 Score = 540 bits (1390), Expect = e-154, Method: Composition-based stats. Identities = 128/407 (31%), Positives = 221/407 (54%), Gaps = 36/407 (8%) Query: 13 LKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEKEMQK 72 ++ YY+ L+P+ + WLN+ +REF+ + Y RY SFN+ D + +++K Sbjct: 10 MEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDFKAQIEK 69 Query: 73 MNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICPKCW 132 NP + +IGA+Y+ P + +T+ +A EKELVFDIDM DYD R CCS A +C KCW Sbjct: 70 ANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSGAQVCSKCW 129 Query: 133 TLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLV 192 +++A++I + AL+EDFG+K +WV+SGRRG HCWV D+ R L+ R +++Y++++ Sbjct: 130 KFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRNVLDYVNVI 189 Query: 193 KGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWDKILALVPETIH 252 + ++ K++ L HP + +S+ +K +F L Q+ E+ + I L+P Sbjct: 190 R-DRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQH--AIQTLLPALYD 246 Query: 253 DELQQSFQK------SHNSLQRWEHLKKVASRYQNNIKNDKYGPWL---EWEIMLQYCFP 303 +L S +K +S ++W + ++A+ K D + L + +++L +P Sbjct: 247 KQLIDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVLMTLYP 306 Query: 304 RLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISFICRELDAISTN 363 +LD+ V+K HLLK+PF +HP TG + VPID + F P P + + E++ Sbjct: 307 KLDVEVTKQTIHLLKAPFCIHPATGNVCVPID----ESFAPEKAPKLIDLQTEME----- 357 Query: 364 EEEKEENEAESDVKHRTRDYKKTSLAPYVKVFEHFLENLDKSRKGEL 410 + D T+L P++ F+ ++ +L K+ G + Sbjct: 358 ---------------KNNDVSLTALQPFINQFQAYVSSLLKNELGSV 389 >1V33-A nrPDB Length = 366 Score = 201 bits (511), Expect = 4e-52, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 131/332 (39%), Gaps = 48/332 (14%) Query: 36 IKNYFQHREFSFTLKDD-IYIRYQSFNNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTV 94 I + REF F + R + + DLE ++ PY + +P + Sbjct: 48 IVKTLELREFGFDHSGEGPSDRKNQYTDIRDLEDYIRATAPYAVYSSVALYEKPQEMEGW 107 Query: 95 KLGAFQAQEKELVFDIDMTDYDDVRRC-CSSADICPKCWTLMTMAIRIIDRALKEDFGFK 153 ELVFDID D +RRC +CP C +R L+E+ GF Sbjct: 108 -------LGTELVFDIDAKDL-PLRRCEHEPGTVCPICLNDAKEIVRDTVIILREELGFN 159 Query: 154 HRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLVK-GGQDVKKKVHLSEK----I 208 +YSG RG H V DE KL S R I+ ++S + + +K+ L+++ + Sbjct: 160 DIHIIYSG-RGYHIRVLDEWALKLDSKSRERILSFVSASEIEDVEEFRKLLLNKRGWFVL 218 Query: 209 HPFIRKSINIIKKYFEEYALVNQDILENKESWDKILALVPETIHDELQQSFQKS--HNSL 266 + ++ + YF + +P I+ +++S KS + Sbjct: 219 NHGYPRAFRLRFGYFI------------------LRIKLPHLINAGIRKSIAKSILKSKE 260 Query: 267 QRWEHL--KKVASRYQNNIKNDKYGPWLEWEIMLQYCFPR--LDINVSKGINHLLKSPFS 322 + +E K + + + + + L L F + D V+ + +L+ P + Sbjct: 261 EIYEEFVRKAILAAFPQGVGIES----LAKLFALSTRFSKSYFDGRVTVDLKRILRLPST 316 Query: 323 VHPKTGRIS--VPIDLQKVDQFDPFT--VPTI 350 +H K G I+ V + + V +F+PF VP Sbjct: 317 LHSKVGLIAKYVGTNERDVMRFNPFKHAVPKF 348 >1G71-A nrPDB Length = 347 Score = 199 bits (505), Expect = 2e-51, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 11/157 (7%) Query: 36 IKNYFQHREFSFTLKDD-IYIRYQSFNNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTV 94 I + + REF F + R +++ DLE ++ +PY AVYS N Sbjct: 28 IVDTLESREFGFDHNGEGPSDRKNQYSDIRDLEDYIRATSPY-----AVYSSVAFYENPR 82 Query: 95 KLGAFQAQEKELVFDIDMTDYDDVRRC-CSSADICPKCWTLMTMAIRIIDRALKEDFGFK 153 ++ ++ E LVFDID D ++RC +CP C + L+E+ GF+ Sbjct: 83 EMEGWRGAE--LVFDIDAKDL-PLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFE 139 Query: 154 HRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLS 190 + VYSG RG H + DE +L S R I+ ++S Sbjct: 140 NIHVVYSG-RGYHIRILDEWALQLDSKSRERILAFIS 175 >5OFN-A nrPDB Length = 330 Score = 71.0 bits (172), Expect = 9e-13, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 31/192 (16%) Query: 23 YSQYYRWLNYGGVIKNYFQHREFSFT-LKDDIYIRYQSFNNQSDLEKEMQKMN-PYKIDI 80 + YY LN + + REF+ D Y+R+ SF++ +L + N P + Sbjct: 18 FRNYY--LNAELELPKDMELREFALQPFGSDTYVRHLSFSSSEELRDYLVNRNLPLHLFY 75 Query: 81 GAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRR---C--CSSADICPKCWTLM 135 + P+ N + +L+FDID +R C C +A + KC Sbjct: 76 SSARYQLPSARN---MEEKAWMGSDLLFDIDADHLCKLRSIRFCPVCGNAVVSEKCERDN 132 Query: 136 TMAI-----------------RIIDRALKEDFGFKHRLWVYSGRRGVHCWV-CDESVRKL 177 + R + L++DFG K +++ +SG RG H V C + L Sbjct: 133 VETLEYVEMTSECIKRGLEQTRNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGNCALL 191 Query: 178 SSAVRSGIVEYL 189 S R I EY+ Sbjct: 192 DSDERKEIAEYV 203 >2R46-A nrPDB Length = 501 Score = 31.7 bits (70), Expect = 0.67, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 28/176 (15%) Query: 66 LEKEMQKMNPYKID-IGAVYSHRPNQHNTVKLGAFQAQEKELVFDID-MTDYDDVRRCCS 123 + M +PY I I + P H + Q ++K +VF I M ++ + Sbjct: 214 FDDGMHLPSPYGIRLIKGSHIVVPRVHTQKQAYILQNEDKRIVFVIPWMDEFSIIGTTDV 273 Query: 124 SADICPKCWT----LMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSS 179 PK + + + + K+ +W YSG R +CD+ + Sbjct: 274 EYKGDPKAVKIEESEINYLLNVYNTHFKKQLSRDDIVWTYSGVRP----LCDDESDSPQA 329 Query: 180 AVRSGIVE---------YLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEY 226 R ++ LS+ G +K+ ++ + Y++ Sbjct: 330 ITRDYTLDIHDENGKAPLLSVFGGKLTTYRKLA---------EHALEKLTPYYQGI 376 >6GMF-A nrPDB Length = 397 Score = 31.3 bits (69), Expect = 0.73, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 71/179 (39%), Gaps = 31/179 (17%) Query: 106 LVFDIDMTD----------YDDVRRCCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHR 155 ++ DID+T + ++RR + + P+ + + + + R L + GF +R Sbjct: 1 MIADIDITAPEVLRNPYALFAELRRTSAVGRLQPQGF-MAVGRYQDVARVLHDAKGFSNR 59 Query: 156 LWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKS 215 W S RGV K +++ IV+ V + K + +++ P ++ Sbjct: 60 GWAASLPRGV----------KWDTSMPPSIVQ----VDPPRHGKLRTLVTKAFTP---RT 102 Query: 216 INIIKKYFEEYALVNQDILENKESWDKILAL---VPETIHDELQQSFQKSHNSLQRWEH 271 + ++ + A D L K +++ + + +P + E+ + +RW Sbjct: 103 VAQLEPRIRDIAHELVDGLRGKSTFEATVEVTVPMPMIVIAEMLGVAPERRADFKRWSD 161 >1F5V-A nrPDB Length = 240 Score = 31.3 bits (69), Expect = 0.92, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 10/96 (10%) Query: 138 AIRIIDRALKEDF-----GFKHR-----LWVYSGRRGVHCWVCDESVRKLSSAVRSGIVE 187 IRI D+AL+E+ G KH WV+ H +C ++ L+ + G+V+ Sbjct: 48 IIRITDKALREELVTLTGGQKHVAQAAEFWVFCADFNRHLQICPDAQLGLAEQLLLGVVD 107 Query: 188 YLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYF 223 + + + + L +R +I + K Sbjct: 108 TAMMAQNALIAAESLGLGGVYIGGLRNNIEAVTKLL 143 >4TTR-A nrPDB Length = 215 Score = 30.9 bits (68), Expect = 1.0, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 3/75 (4%) Query: 197 DVKKKVHLSEKIHPFIRKSI-NIIKKYFEEYALVNQDILENKESWDKILA--LVPETIHD 253 + +++ L +HP IRK I + Y L+ +L NK + + LV + Sbjct: 91 NSNERLWLESLLHPVIRKKIEEQLIVCTSPYCLIEIPLLFNKHHYPYLQKVLLVIAPLES 150 Query: 254 ELQQSFQKSHNSLQR 268 +L + ++ H + ++ Sbjct: 151 QLDRIVKRDHCTKKQ 165 >2VSX-A nrPDB Length = 395 Score = 30.5 bits (67), Expect = 1.5, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%) Query: 61 NNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDM 112 N + +E+ K+ K + A+YS P Q + F++ ++ D+ Sbjct: 268 NTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL 319 >2R2P-A nrPDB Length = 295 Score = 30.1 bits (66), Expect = 1.7, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 32/66 (48%), Gaps = 5/66 (7%) Query: 220 KKYFEEYALVNQDILENKESWDKILALV--PETIHDELQQSFQKSHNSLQRWEHLKKVAS 277 + Y+E + NQD+++ E ++ + + P ++ + +QK NS +++ + + Sbjct: 226 RPYWE---MTNQDVIKAVEEGYRLPSPMDCPAALYQLMLDCWQKERNSRPKFDEIVNMLD 282 Query: 278 RYQNNI 283 + N Sbjct: 283 KLIRNP 288 >3G4D-A nrPDB Length = 554 Score = 29.0 bits (63), Expect = 3.6, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Query: 328 GRISVPIDLQKVDQFDPFTVPTISFICRELDAISTNEEEKEENEAESDVKHRTRDYKKTS 387 G I P + K DP + + ICR +D ++ ++ + + S ++ +Y T+ Sbjct: 422 GDIVTP-ETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTA 480 Query: 388 LAPYVKVFEHFLENLDKSRKGELLKKSDL 416 Y VF +E+ K E LK +++ Sbjct: 481 QEAY-DVFNKHVESAWKDLNQEFLKPTEM 508 >5NGU-A nrPDB Length = 381 Score = 29.0 bits (63), Expect = 4.2, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 18/116 (15%) Query: 18 RRLFPYSQYYRWLNY------GGVIKN-----YFQHREFSFTL---KDDIYIRY--QSFN 61 R +FP Y LN+ ++ + R + +L + R + + Sbjct: 244 RPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADS 303 Query: 62 NQSDLEKEMQKMNPY-KIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYD 116 DL +M NP+ +I++ +H P E FD+++ D Sbjct: 304 KALDLLDKMLTFNPHKRIEVEQALAH-PYLEQYYDPSDEPIAEAPFKFDMELDDLP 358 >5FXI-A nrPDB Length = 846 Score = 29.0 bits (63), Expect = 4.4, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 42/96 (43%), Gaps = 16/96 (16%) Query: 198 VKKKVHLS--EKIHPFIRKS---INIIKKY-FEEYALVNQDILENKESWDKILALVPETI 251 K +HLS + P+ +S +++ Y + L+ D E + + ++ L+ E Sbjct: 107 SDKSIHLSFLRTVPPYSHQSSVWFEMMRVYNWNHIILLVSDDHEGRAAQKRLETLLEE-- 164 Query: 252 HDELQQSFQKSHNSLQRWEHLKKVASRYQNNIKNDK 287 ++S + + +E+L +++ + K +K Sbjct: 165 --------RESKSKKRNYENLDQLSYDNKRGPKAEK 192 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.308 0.125 0.346 Lambda K H 0.267 0.0388 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,843,729 Number of Sequences: 36641 Number of extensions: 616331 Number of successful extensions: 1931 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 33 Number of HSP's that attempted gapping in prelim test: 1897 Number of HSP's gapped (non-prelim): 47 length of query: 420 length of database: 10,336,785 effective HSP length: 100 effective length of query: 320 effective length of database: 6,672,685 effective search space: 2135259200 effective search space used: 2135259200 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 60 (27.8 bits)