BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P49366 (369 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 1ROZ-A nrPDB 772 0.0 4P63-A nrPDB 277 6e-75 6DFT-B nrPDB 225 3e-59 6DFT-A nrPDB 175 2e-44 4EX5-A nrPDB 31 0.76 3BZK-A nrPDB 28 6.0 >1ROZ-A nrPDB Length = 369 Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/369 (100%), Positives = 369/369 (100%) Query: 1 MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG 60 MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG Sbjct: 1 MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG 60 Query: 61 RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV 120 RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV Sbjct: 61 RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV 120 Query: 121 QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE 180 QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE Sbjct: 121 QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE 180 Query: 181 DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS 240 DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS Sbjct: 181 DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS 240 Query: 241 LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA 300 LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA Sbjct: 241 LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA 300 Query: 301 DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD 360 DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD Sbjct: 301 DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD 360 Query: 361 AFMHEKNED 369 AFMHEKNED Sbjct: 361 AFMHEKNED 369 >4P63-A nrPDB Length = 342 Score = 277 bits (708), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 149/343 (43%), Positives = 213/343 (62%), Gaps = 28/343 (8%) Query: 17 VLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEP 76 VLK S + E +V+G + + ++ + GFQAT+ GRA++ I +K+E Sbjct: 7 VLKKSEKI--EGVEVKGPWLDDAQSLEEVVSYYYRIGFQATHLGRAIE-----IWRKVE- 58 Query: 77 LSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVE 136 + R +FLGYTSN+ISSG+RE I +LV+ VDV+VTTAGGVE Sbjct: 59 ------------EKRERGEEIRVFLGYTSNIISSGLREIIAWLVKEKKVDVIVTTAGGVE 106 Query: 137 EDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFEDWLMPILDQMVMEQNT 196 ED IK L P LG++ + ELR+ G+NRIGN+ VPN+ Y +FE +++P ++++ + Sbjct: 107 EDFIKSLKPFILGDWEVDDAELRKKGVNRIGNIFVPNDRYIEFEKYMIPFFERVLKIEEK 166 Query: 197 EGVKWTPSKMIARLGKEINNP------ESVYYWAQKNHIPVFSPALTDGSLGDMIFF--H 248 T S+ I +G+ ++ +SV YWA KN+IP+F PA+TDGS+GDM++F Sbjct: 167 LSRPLTASEFIYEMGRYMDEKLGKEKEKSVIYWAYKNNIPIFCPAITDGSIGDMLYFFKE 226 Query: 249 SYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGADYAVYINT 308 ++ L++DI D+ +N AI AK T IILGG + KH I NANL R G DYA+YI+T Sbjct: 227 ERRDSRLIIDIANDIVKLNNLAITAKETASIILGGSLPKHAIINANLFRGGTDYAIYIST 286 Query: 309 AQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLV 351 A +DGS SGA P E VSWGKI+ A V+V+ DA+L+FP+LV Sbjct: 287 AVPWDGSLSGAPPREGVSWGKIKAKADYVEVWGDATLIFPILV 329 >6DFT-B nrPDB Length = 342 Score = 225 bits (573), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 129/335 (38%), Positives = 190/335 (56%), Gaps = 36/335 (10%) Query: 43 RALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLG 102 R +L A+ G +ATN GRA + ++++ L D ++ + L Sbjct: 29 RCVLNAYPNIGLEATNLGRARR----IVQRALNDNGMDGNK---------------VMLA 69 Query: 103 YTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENG 162 YTSNLISSG+R+T L + N + +VTTAGGVEED+IKCL T +G+F+L LR NG Sbjct: 70 YTSNLISSGLRDTFACLARENRIGAVVTTAGGVEEDVIKCLGDTLVGDFALNDHALRNNG 129 Query: 163 INRIGNLLVPNENYCKFEDWLMPILDQMVMEQNTE--GVKWTPSKMIARLGKEINN---- 216 +NR+GNLLVPN+NY FED+ +P+L ++ +Q K TPS++IA +G + + Sbjct: 130 LNRVGNLLVPNDNYRNFEDFFVPLLRRLHEQQRDSRWTTKTTPSQIIAEIGAALESVRPN 189 Query: 217 --PESVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAK 274 S+ YW +N IPVFSPA TDGS+GDMI+F++Y GLV+D V D+R + + Sbjct: 190 DCGSSLIYWCYRNDIPVFSPAFTDGSMGDMIYFYNYSRKGLVVDPVPDVRRLRQLGCKST 249 Query: 275 CTG---MIILGGGVVKHHIANANLMRN-GADYAVYINTAQEFDGSDSGARPDEAVSWGKI 330 G I+LG G+ KHH L+RN AD VY+ T + DG +S + G + Sbjct: 250 NVGRITCIVLGAGLPKHH-----LLRNVQADAVVYVTTGSDADGCESSCNVMADRANGLL 304 Query: 331 RVDAQPVKVYADASLVFPLLVAETFAQKMDAFMHE 365 + V+V+ DA+++ PLL+ + K + E Sbjct: 305 SPNCDVVRVHGDATIISPLLLLRSSDGKEKVGVRE 339 >6DFT-A nrPDB Length = 461 Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 80/138 (57%), Positives = 106/138 (76%), Gaps = 1/138 (0%) Query: 219 SVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKN-PGLVLDIVEDLRLINTQAIFAKCTG 277 +V YWA +N +P+FSP+LTDG + + I P L LD+V D+ +N A+ ++ TG Sbjct: 307 TVLYWAARNGVPIFSPSLTDGDIMEFILTAGDTGVPLLQLDLVADIHRLNRLAMRSRRTG 366 Query: 278 MIILGGGVVKHHIANANLMRNGADYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPV 337 M+ILGGGVVKHH+ NANLMRNGADYAV++N AQEFDGSD+GARP EAVSWGK+R+D+ V Sbjct: 367 MMILGGGVVKHHVCNANLMRNGADYAVFLNNAQEFDGSDAGARPGEAVSWGKLRLDSTAV 426 Query: 338 KVYADASLVFPLLVAETF 355 KVY++ ++VFPL+V F Sbjct: 427 KVYSEVTIVFPLIVVHVF 444 Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Query: 44 ALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGY 103 A+L + T GFQA+N RA M+ + P D + T+F+G Sbjct: 39 AVLNRYSTVGFQASNLARAFSICEMMLTPQ-SPSPSLMPTEGDQASESPVMVQPTLFVGV 97 Query: 104 TSNLISSGIRETIRYLV 120 T+NL +G RE IR+L Sbjct: 98 TANLFGTGCREAIRFLC 114 >4EX5-A nrPDB Length = 529 Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust. Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 7/135 (5%) Query: 118 YLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGIN-RIGNLLVPNENY 176 ++ HN +D+ + E L + + + F + + R G++ R E Y Sbjct: 243 FVTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEI-NRNFRNEGVSPRHNPEFTMMEFY 301 Query: 177 CKFED--WLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSP 234 + D WLM ++++ + + + + I G+E++ + + I ++P Sbjct: 302 AAYTDYRWLMDFTERLIRQAAVDALG---TATIQYQGRELDLAQPFHRLTITQAIQKYAP 358 Query: 235 ALTDGSLGDMIFFHS 249 + TDG L D F S Sbjct: 359 SYTDGQLSDDAFLRS 373 >3BZK-A nrPDB Length = 785 Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Query: 2 EGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRG-VNYRALLE 47 +G + EA GALA L TL PES R D +G + +A+LE Sbjct: 118 KGQIALEAGLGALADALFDDPTLVPESEAARFVDAEKGFADVKAVLE 164 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 1ROZ-A nrPDB 620 e-178 4P63-A nrPDB 477 e-135 6DFT-B nrPDB 441 e-124 6DFT-A nrPDB 258 3e-69 Sequences not found previously or not previously below threshold: 4XJR-A nrPDB 34 0.16 4EX5-A nrPDB 30 1.5 3CKK-A nrPDB 30 1.8 5JTV-A nrPDB 28 5.9 5N2I-A nrPDB 28 7.1 CONVERGED! >1ROZ-A nrPDB Length = 369 Score = 620 bits (1600), Expect = e-178, Method: Composition-based stats. Identities = 369/369 (100%), Positives = 369/369 (100%) Query: 1 MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG 60 MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG Sbjct: 1 MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG 60 Query: 61 RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV 120 RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV Sbjct: 61 RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV 120 Query: 121 QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE 180 QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE Sbjct: 121 QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE 180 Query: 181 DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS 240 DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS Sbjct: 181 DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS 240 Query: 241 LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA 300 LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA Sbjct: 241 LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA 300 Query: 301 DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD 360 DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD Sbjct: 301 DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD 360 Query: 361 AFMHEKNED 369 AFMHEKNED Sbjct: 361 AFMHEKNED 369 >4P63-A nrPDB Length = 342 Score = 477 bits (1228), Expect = e-135, Method: Composition-based stats. Identities = 149/343 (43%), Positives = 213/343 (62%), Gaps = 28/343 (8%) Query: 17 VLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEP 76 VLK S + E +V+G + + ++ + GFQAT+ GRA++ I +K+E Sbjct: 7 VLKKSEKI--EGVEVKGPWLDDAQSLEEVVSYYYRIGFQATHLGRAIE-----IWRKVE- 58 Query: 77 LSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVE 136 + R +FLGYTSN+ISSG+RE I +LV+ VDV+VTTAGGVE Sbjct: 59 ------------EKRERGEEIRVFLGYTSNIISSGLREIIAWLVKEKKVDVIVTTAGGVE 106 Query: 137 EDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFEDWLMPILDQMVMEQNT 196 ED IK L P LG++ + ELR+ G+NRIGN+ VPN+ Y +FE +++P ++++ + Sbjct: 107 EDFIKSLKPFILGDWEVDDAELRKKGVNRIGNIFVPNDRYIEFEKYMIPFFERVLKIEEK 166 Query: 197 EGVKWTPSKMIARLGKEINNP------ESVYYWAQKNHIPVFSPALTDGSLGDMIFF--H 248 T S+ I +G+ ++ +SV YWA KN+IP+F PA+TDGS+GDM++F Sbjct: 167 LSRPLTASEFIYEMGRYMDEKLGKEKEKSVIYWAYKNNIPIFCPAITDGSIGDMLYFFKE 226 Query: 249 SYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGADYAVYINT 308 ++ L++DI D+ +N AI AK T IILGG + KH I NANL R G DYA+YI+T Sbjct: 227 ERRDSRLIIDIANDIVKLNNLAITAKETASIILGGSLPKHAIINANLFRGGTDYAIYIST 286 Query: 309 AQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLV 351 A +DGS SGA P E VSWGKI+ A V+V+ DA+L+FP+LV Sbjct: 287 AVPWDGSLSGAPPREGVSWGKIKAKADYVEVWGDATLIFPILV 329 >6DFT-B nrPDB Length = 342 Score = 441 bits (1134), Expect = e-124, Method: Composition-based stats. Identities = 129/338 (38%), Positives = 190/338 (56%), Gaps = 36/338 (10%) Query: 40 VNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTI 99 R +L A+ G +ATN GRA + ++++ L D ++ + Sbjct: 26 EAIRCVLNAYPNIGLEATNLGRARR----IVQRALNDNGMDGNK---------------V 66 Query: 100 FLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELR 159 L YTSNLISSG+R+T L + N + +VTTAGGVEED+IKCL T +G+F+L LR Sbjct: 67 MLAYTSNLISSGLRDTFACLARENRIGAVVTTAGGVEEDVIKCLGDTLVGDFALNDHALR 126 Query: 160 ENGINRIGNLLVPNENYCKFEDWLMPILDQMVMEQNTE--GVKWTPSKMIARLGKEINN- 216 NG+NR+GNLLVPN+NY FED+ +P+L ++ +Q K TPS++IA +G + + Sbjct: 127 NNGLNRVGNLLVPNDNYRNFEDFFVPLLRRLHEQQRDSRWTTKTTPSQIIAEIGAALESV 186 Query: 217 -----PESVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLVLDIVEDLRLINTQAI 271 S+ YW +N IPVFSPA TDGS+GDMI+F++Y GLV+D V D+R + Sbjct: 187 RPNDCGSSLIYWCYRNDIPVFSPAFTDGSMGDMIYFYNYSRKGLVVDPVPDVRRLRQLGC 246 Query: 272 FAKCTG---MIILGGGVVKHHIANANLMRN-GADYAVYINTAQEFDGSDSGARPDEAVSW 327 + G I+LG G+ KHH L+RN AD VY+ T + DG +S + Sbjct: 247 KSTNVGRITCIVLGAGLPKHH-----LLRNVQADAVVYVTTGSDADGCESSCNVMADRAN 301 Query: 328 GKIRVDAQPVKVYADASLVFPLLVAETFAQKMDAFMHE 365 G + + V+V+ DA+++ PLL+ + K + E Sbjct: 302 GLLSPNCDVVRVHGDATIISPLLLLRSSDGKEKVGVRE 339 >6DFT-A nrPDB Length = 461 Score = 258 bits (659), Expect = 3e-69, Method: Composition-based stats. Identities = 118/423 (27%), Positives = 179/423 (42%), Gaps = 102/423 (24%) Query: 31 VRGYDFNRGVNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPLSQDEDQHADLTQS 90 V G + + A+L + T GFQA+N RA M+ + P D Sbjct: 26 VVGPNQEDLHSAEAVLNRYSTVGFQASNLARAFSICEMMLTPQ-SPSPSLMPTEGDQASE 84 Query: 91 RRPLTSCTIFLGYTSNLISSGIRETIRYLVQH---------------------------- 122 + T+F+G T+NL +G RE IR+L Sbjct: 85 SPVMVQPTLFVGVTANLFGTGCREAIRFLCTECVPLPNGVEPATPLDDMAGISCDGTGAL 144 Query: 123 --------NMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKE--------------LRE 160 ++ VLV + G +E D+ + L S G E R Sbjct: 145 KPSPCDSRALIHVLVVSGGAMEHDIRRACESYKL---SRDGAEEEGEQFHHPVERDRSRS 201 Query: 161 NGIN-RIGNLLVPNENYCK---FEDWLMPILDQMVMEQNTEGVKWTPS---KMIARLGKE 213 G + GN+ + F + ++ ++ Q E + + + Sbjct: 202 KGTDCHFGNVRYNSSGVASRNLFSCVMRCLVKRLAEAQRKEKANREAAPIPEAYYDVCSW 261 Query: 214 INNPESVYYWAQKNHIPVFSPALTD-GSLGD---------------MIFFHSYKN----- 252 P +++Y A +F+ AL + G + D ++++ + Sbjct: 262 AITPSTLWYMAGLWMADIFTEALQETGEVTDEKVASEEGLKRAKSTVLYWAARNGVPIFS 321 Query: 253 --------------------PGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIAN 292 P L LD+V D+ +N A+ ++ TGM+ILGGGVVKHH+ N Sbjct: 322 PSLTDGDIMEFILTAGDTGVPLLQLDLVADIHRLNRLAMRSRRTGMMILGGGVVKHHVCN 381 Query: 293 ANLMRNGADYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVA 352 ANLMRNGADYAV++N AQEFDGSD+GARP EAVSWGK+R+D+ VKVY++ ++VFPL+V Sbjct: 382 ANLMRNGADYAVFLNNAQEFDGSDAGARPGEAVSWGKLRLDSTAVKVYSEVTIVFPLIVV 441 Query: 353 ETF 355 F Sbjct: 442 HVF 444 >4XJR-A nrPDB Length = 454 Score = 33.5 bits (75), Expect = 0.16, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 6/80 (7%) Query: 76 PLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGV 135 P D L + YTSNLI+ G ++ I Q + ++ V Sbjct: 54 PGLLAMPTTVDGCVRTPSLVINDLIYAYTSNLITRGCQD-IGKSYQVLQIGIIT-----V 107 Query: 136 EEDLIKCLAPTYLGEFSLRG 155 DL+ L P F++ Sbjct: 108 NSDLVPDLNPRISHTFNIND 127 >4EX5-A nrPDB Length = 529 Score = 30.1 bits (66), Expect = 1.5, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 10/123 (8%) Query: 143 LAPTYLGEFSLR---GKELRENGIN-RIGNLLVPNENYCKFED--WLMPILDQMVMEQNT 196 L +G F + R G++ R E Y + D WLM ++++ + Sbjct: 264 LKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQ--- 320 Query: 197 EGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLV 256 V + I G+E++ + + I ++P+ TDG L D F S L Sbjct: 321 AAVDALGTATIQYQGRELDLAQPFHRLTITQAIQKYAPSYTDGQLSDDAFLRSEL-KRLG 379 Query: 257 LDI 259 +D+ Sbjct: 380 VDV 382 >3CKK-A nrPDB Length = 235 Score = 30.1 bits (66), Expect = 1.8, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 9/92 (9%) Query: 141 KCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFEDWLMPILDQMVMEQNTEGVK 200 + ++PT L E++ + R+G L+ + + DW+ ++ + + Sbjct: 144 RIISPTLLAEYAY---------VLRVGGLVYTITDVLELHDWMCTHFEEHPLFERVPLED 194 Query: 201 WTPSKMIARLGKEINNPESVYYWAQKNHIPVF 232 + ++ LG + V KN +F Sbjct: 195 LSEDPVVGHLGTSTEEGKKVLRNGGKNFPAIF 226 >5JTV-A nrPDB Length = 594 Score = 28.1 bits (61), Expect = 5.9, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Query: 136 EEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCK--FEDWLMPILDQMVME 193 E++L++CL+P F + L + I++ +LV ++ K F + +P L ++ Sbjct: 447 EDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQG 506 Query: 194 QN 195 ++ Sbjct: 507 EH 508 >5N2I-A nrPDB Length = 232 Score = 28.1 bits (61), Expect = 7.1, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%) Query: 281 LGGGVVKHHIANANLMRNGADYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDA 334 LG G+ + NA A+ + A +DG + + V GKI VD Sbjct: 63 LGEGLPVRGMDNA----GAAEAGDVVIVAVPWDGHRALLESLKDVLAGKIVVDC 112 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.312 0.132 0.341 Lambda K H 0.267 0.0399 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,142,669 Number of Sequences: 36641 Number of extensions: 509956 Number of successful extensions: 1248 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 1215 Number of HSP's gapped (non-prelim): 23 length of query: 369 length of database: 10,336,785 effective HSP length: 98 effective length of query: 271 effective length of database: 6,745,967 effective search space: 1828157057 effective search space used: 1828157057 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 60 (27.8 bits)