BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P49366
         (369 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

1ROZ-A nrPDB                                                          772   0.0  
4P63-A nrPDB                                                          277   6e-75
6DFT-B nrPDB                                                          225   3e-59
6DFT-A nrPDB                                                          175   2e-44
4EX5-A nrPDB                                                           31   0.76 
3BZK-A nrPDB                                                           28   6.0  

>1ROZ-A nrPDB
          Length = 369

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/369 (100%), Positives = 369/369 (100%)

Query: 1   MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG 60
           MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG
Sbjct: 1   MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG 60

Query: 61  RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV 120
           RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV
Sbjct: 61  RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV 120

Query: 121 QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE 180
           QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE
Sbjct: 121 QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE 180

Query: 181 DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS 240
           DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS
Sbjct: 181 DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS 240

Query: 241 LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA 300
           LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA
Sbjct: 241 LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA 300

Query: 301 DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD 360
           DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD
Sbjct: 301 DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD 360

Query: 361 AFMHEKNED 369
           AFMHEKNED
Sbjct: 361 AFMHEKNED 369


>4P63-A nrPDB
          Length = 342

 Score =  277 bits (708), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 149/343 (43%), Positives = 213/343 (62%), Gaps = 28/343 (8%)

Query: 17  VLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEP 76
           VLK S  +  E  +V+G   +   +   ++  +   GFQAT+ GRA++     I +K+E 
Sbjct: 7   VLKKSEKI--EGVEVKGPWLDDAQSLEEVVSYYYRIGFQATHLGRAIE-----IWRKVE- 58

Query: 77  LSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVE 136
                       + R       +FLGYTSN+ISSG+RE I +LV+   VDV+VTTAGGVE
Sbjct: 59  ------------EKRERGEEIRVFLGYTSNIISSGLREIIAWLVKEKKVDVIVTTAGGVE 106

Query: 137 EDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFEDWLMPILDQMVMEQNT 196
           ED IK L P  LG++ +   ELR+ G+NRIGN+ VPN+ Y +FE +++P  ++++  +  
Sbjct: 107 EDFIKSLKPFILGDWEVDDAELRKKGVNRIGNIFVPNDRYIEFEKYMIPFFERVLKIEEK 166

Query: 197 EGVKWTPSKMIARLGKEINNP------ESVYYWAQKNHIPVFSPALTDGSLGDMIFF--H 248
                T S+ I  +G+ ++        +SV YWA KN+IP+F PA+TDGS+GDM++F   
Sbjct: 167 LSRPLTASEFIYEMGRYMDEKLGKEKEKSVIYWAYKNNIPIFCPAITDGSIGDMLYFFKE 226

Query: 249 SYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGADYAVYINT 308
             ++  L++DI  D+  +N  AI AK T  IILGG + KH I NANL R G DYA+YI+T
Sbjct: 227 ERRDSRLIIDIANDIVKLNNLAITAKETASIILGGSLPKHAIINANLFRGGTDYAIYIST 286

Query: 309 AQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLV 351
           A  +DGS SGA P E VSWGKI+  A  V+V+ DA+L+FP+LV
Sbjct: 287 AVPWDGSLSGAPPREGVSWGKIKAKADYVEVWGDATLIFPILV 329


>6DFT-B nrPDB
          Length = 342

 Score =  225 bits (573), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 190/335 (56%), Gaps = 36/335 (10%)

Query: 43  RALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLG 102
           R +L A+   G +ATN GRA +    ++++ L     D ++               + L 
Sbjct: 29  RCVLNAYPNIGLEATNLGRARR----IVQRALNDNGMDGNK---------------VMLA 69

Query: 103 YTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENG 162
           YTSNLISSG+R+T   L + N +  +VTTAGGVEED+IKCL  T +G+F+L    LR NG
Sbjct: 70  YTSNLISSGLRDTFACLARENRIGAVVTTAGGVEEDVIKCLGDTLVGDFALNDHALRNNG 129

Query: 163 INRIGNLLVPNENYCKFEDWLMPILDQMVMEQNTE--GVKWTPSKMIARLGKEINN---- 216
           +NR+GNLLVPN+NY  FED+ +P+L ++  +Q       K TPS++IA +G  + +    
Sbjct: 130 LNRVGNLLVPNDNYRNFEDFFVPLLRRLHEQQRDSRWTTKTTPSQIIAEIGAALESVRPN 189

Query: 217 --PESVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAK 274
               S+ YW  +N IPVFSPA TDGS+GDMI+F++Y   GLV+D V D+R +      + 
Sbjct: 190 DCGSSLIYWCYRNDIPVFSPAFTDGSMGDMIYFYNYSRKGLVVDPVPDVRRLRQLGCKST 249

Query: 275 CTG---MIILGGGVVKHHIANANLMRN-GADYAVYINTAQEFDGSDSGARPDEAVSWGKI 330
             G    I+LG G+ KHH     L+RN  AD  VY+ T  + DG +S        + G +
Sbjct: 250 NVGRITCIVLGAGLPKHH-----LLRNVQADAVVYVTTGSDADGCESSCNVMADRANGLL 304

Query: 331 RVDAQPVKVYADASLVFPLLVAETFAQKMDAFMHE 365
             +   V+V+ DA+++ PLL+  +   K    + E
Sbjct: 305 SPNCDVVRVHGDATIISPLLLLRSSDGKEKVGVRE 339


>6DFT-A nrPDB
          Length = 461

 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 80/138 (57%), Positives = 106/138 (76%), Gaps = 1/138 (0%)

Query: 219 SVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKN-PGLVLDIVEDLRLINTQAIFAKCTG 277
           +V YWA +N +P+FSP+LTDG + + I        P L LD+V D+  +N  A+ ++ TG
Sbjct: 307 TVLYWAARNGVPIFSPSLTDGDIMEFILTAGDTGVPLLQLDLVADIHRLNRLAMRSRRTG 366

Query: 278 MIILGGGVVKHHIANANLMRNGADYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPV 337
           M+ILGGGVVKHH+ NANLMRNGADYAV++N AQEFDGSD+GARP EAVSWGK+R+D+  V
Sbjct: 367 MMILGGGVVKHHVCNANLMRNGADYAVFLNNAQEFDGSDAGARPGEAVSWGKLRLDSTAV 426

Query: 338 KVYADASLVFPLLVAETF 355
           KVY++ ++VFPL+V   F
Sbjct: 427 KVYSEVTIVFPLIVVHVF 444



 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 44  ALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGY 103
           A+L  + T GFQA+N  RA      M+  +  P         D       +   T+F+G 
Sbjct: 39  AVLNRYSTVGFQASNLARAFSICEMMLTPQ-SPSPSLMPTEGDQASESPVMVQPTLFVGV 97

Query: 104 TSNLISSGIRETIRYLV 120
           T+NL  +G RE IR+L 
Sbjct: 98  TANLFGTGCREAIRFLC 114


>4EX5-A nrPDB
          Length = 529

 Score = 31.2 bits (69), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 7/135 (5%)

Query: 118 YLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGIN-RIGNLLVPNENY 176
           ++  HN +D+ +      E  L + +   +   F +  +  R  G++ R        E Y
Sbjct: 243 FVTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEI-NRNFRNEGVSPRHNPEFTMMEFY 301

Query: 177 CKFED--WLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSP 234
             + D  WLM   ++++ +   + +    +  I   G+E++  +  +       I  ++P
Sbjct: 302 AAYTDYRWLMDFTERLIRQAAVDALG---TATIQYQGRELDLAQPFHRLTITQAIQKYAP 358

Query: 235 ALTDGSLGDMIFFHS 249
           + TDG L D  F  S
Sbjct: 359 SYTDGQLSDDAFLRS 373


>3BZK-A nrPDB
          Length = 785

 Score = 28.1 bits (61), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 2   EGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRG-VNYRALLE 47
           +G +  EA  GALA  L    TL PES   R  D  +G  + +A+LE
Sbjct: 118 KGQIALEAGLGALADALFDDPTLVPESEAARFVDAEKGFADVKAVLE 164


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

1ROZ-A nrPDB                                                          620   e-178
4P63-A nrPDB                                                          477   e-135
6DFT-B nrPDB                                                          441   e-124
6DFT-A nrPDB                                                          258   3e-69

Sequences not found previously or not previously below threshold:

4XJR-A nrPDB                                                           34   0.16 
4EX5-A nrPDB                                                           30   1.5  
3CKK-A nrPDB                                                           30   1.8  
5JTV-A nrPDB                                                           28   5.9  
5N2I-A nrPDB                                                           28   7.1  


CONVERGED!
>1ROZ-A nrPDB
          Length = 369

 Score =  620 bits (1600), Expect = e-178,   Method: Composition-based stats.
 Identities = 369/369 (100%), Positives = 369/369 (100%)

Query: 1   MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG 60
           MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG
Sbjct: 1   MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG 60

Query: 61  RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV 120
           RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV
Sbjct: 61  RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV 120

Query: 121 QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE 180
           QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE
Sbjct: 121 QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE 180

Query: 181 DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS 240
           DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS
Sbjct: 181 DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS 240

Query: 241 LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA 300
           LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA
Sbjct: 241 LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA 300

Query: 301 DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD 360
           DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD
Sbjct: 301 DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD 360

Query: 361 AFMHEKNED 369
           AFMHEKNED
Sbjct: 361 AFMHEKNED 369


>4P63-A nrPDB
          Length = 342

 Score =  477 bits (1228), Expect = e-135,   Method: Composition-based stats.
 Identities = 149/343 (43%), Positives = 213/343 (62%), Gaps = 28/343 (8%)

Query: 17  VLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEP 76
           VLK S  +  E  +V+G   +   +   ++  +   GFQAT+ GRA++     I +K+E 
Sbjct: 7   VLKKSEKI--EGVEVKGPWLDDAQSLEEVVSYYYRIGFQATHLGRAIE-----IWRKVE- 58

Query: 77  LSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVE 136
                       + R       +FLGYTSN+ISSG+RE I +LV+   VDV+VTTAGGVE
Sbjct: 59  ------------EKRERGEEIRVFLGYTSNIISSGLREIIAWLVKEKKVDVIVTTAGGVE 106

Query: 137 EDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFEDWLMPILDQMVMEQNT 196
           ED IK L P  LG++ +   ELR+ G+NRIGN+ VPN+ Y +FE +++P  ++++  +  
Sbjct: 107 EDFIKSLKPFILGDWEVDDAELRKKGVNRIGNIFVPNDRYIEFEKYMIPFFERVLKIEEK 166

Query: 197 EGVKWTPSKMIARLGKEINNP------ESVYYWAQKNHIPVFSPALTDGSLGDMIFF--H 248
                T S+ I  +G+ ++        +SV YWA KN+IP+F PA+TDGS+GDM++F   
Sbjct: 167 LSRPLTASEFIYEMGRYMDEKLGKEKEKSVIYWAYKNNIPIFCPAITDGSIGDMLYFFKE 226

Query: 249 SYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGADYAVYINT 308
             ++  L++DI  D+  +N  AI AK T  IILGG + KH I NANL R G DYA+YI+T
Sbjct: 227 ERRDSRLIIDIANDIVKLNNLAITAKETASIILGGSLPKHAIINANLFRGGTDYAIYIST 286

Query: 309 AQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLV 351
           A  +DGS SGA P E VSWGKI+  A  V+V+ DA+L+FP+LV
Sbjct: 287 AVPWDGSLSGAPPREGVSWGKIKAKADYVEVWGDATLIFPILV 329


>6DFT-B nrPDB
          Length = 342

 Score =  441 bits (1134), Expect = e-124,   Method: Composition-based stats.
 Identities = 129/338 (38%), Positives = 190/338 (56%), Gaps = 36/338 (10%)

Query: 40  VNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTI 99
              R +L A+   G +ATN GRA +    ++++ L     D ++               +
Sbjct: 26  EAIRCVLNAYPNIGLEATNLGRARR----IVQRALNDNGMDGNK---------------V 66

Query: 100 FLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELR 159
            L YTSNLISSG+R+T   L + N +  +VTTAGGVEED+IKCL  T +G+F+L    LR
Sbjct: 67  MLAYTSNLISSGLRDTFACLARENRIGAVVTTAGGVEEDVIKCLGDTLVGDFALNDHALR 126

Query: 160 ENGINRIGNLLVPNENYCKFEDWLMPILDQMVMEQNTE--GVKWTPSKMIARLGKEINN- 216
            NG+NR+GNLLVPN+NY  FED+ +P+L ++  +Q       K TPS++IA +G  + + 
Sbjct: 127 NNGLNRVGNLLVPNDNYRNFEDFFVPLLRRLHEQQRDSRWTTKTTPSQIIAEIGAALESV 186

Query: 217 -----PESVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLVLDIVEDLRLINTQAI 271
                  S+ YW  +N IPVFSPA TDGS+GDMI+F++Y   GLV+D V D+R +     
Sbjct: 187 RPNDCGSSLIYWCYRNDIPVFSPAFTDGSMGDMIYFYNYSRKGLVVDPVPDVRRLRQLGC 246

Query: 272 FAKCTG---MIILGGGVVKHHIANANLMRN-GADYAVYINTAQEFDGSDSGARPDEAVSW 327
            +   G    I+LG G+ KHH     L+RN  AD  VY+ T  + DG +S        + 
Sbjct: 247 KSTNVGRITCIVLGAGLPKHH-----LLRNVQADAVVYVTTGSDADGCESSCNVMADRAN 301

Query: 328 GKIRVDAQPVKVYADASLVFPLLVAETFAQKMDAFMHE 365
           G +  +   V+V+ DA+++ PLL+  +   K    + E
Sbjct: 302 GLLSPNCDVVRVHGDATIISPLLLLRSSDGKEKVGVRE 339


>6DFT-A nrPDB
          Length = 461

 Score =  258 bits (659), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 118/423 (27%), Positives = 179/423 (42%), Gaps = 102/423 (24%)

Query: 31  VRGYDFNRGVNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPLSQDEDQHADLTQS 90
           V G +     +  A+L  + T GFQA+N  RA      M+  +  P         D    
Sbjct: 26  VVGPNQEDLHSAEAVLNRYSTVGFQASNLARAFSICEMMLTPQ-SPSPSLMPTEGDQASE 84

Query: 91  RRPLTSCTIFLGYTSNLISSGIRETIRYLVQH---------------------------- 122
              +   T+F+G T+NL  +G RE IR+L                               
Sbjct: 85  SPVMVQPTLFVGVTANLFGTGCREAIRFLCTECVPLPNGVEPATPLDDMAGISCDGTGAL 144

Query: 123 --------NMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKE--------------LRE 160
                    ++ VLV + G +E D+ +      L   S  G E               R 
Sbjct: 145 KPSPCDSRALIHVLVVSGGAMEHDIRRACESYKL---SRDGAEEEGEQFHHPVERDRSRS 201

Query: 161 NGIN-RIGNLLVPNENYCK---FEDWLMPILDQMVMEQNTEGVKWTPS---KMIARLGKE 213
            G +   GN+   +        F   +  ++ ++   Q  E      +   +    +   
Sbjct: 202 KGTDCHFGNVRYNSSGVASRNLFSCVMRCLVKRLAEAQRKEKANREAAPIPEAYYDVCSW 261

Query: 214 INNPESVYYWAQKNHIPVFSPALTD-GSLGD---------------MIFFHSYKN----- 252
              P +++Y A      +F+ AL + G + D               ++++ +        
Sbjct: 262 AITPSTLWYMAGLWMADIFTEALQETGEVTDEKVASEEGLKRAKSTVLYWAARNGVPIFS 321

Query: 253 --------------------PGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIAN 292
                               P L LD+V D+  +N  A+ ++ TGM+ILGGGVVKHH+ N
Sbjct: 322 PSLTDGDIMEFILTAGDTGVPLLQLDLVADIHRLNRLAMRSRRTGMMILGGGVVKHHVCN 381

Query: 293 ANLMRNGADYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVA 352
           ANLMRNGADYAV++N AQEFDGSD+GARP EAVSWGK+R+D+  VKVY++ ++VFPL+V 
Sbjct: 382 ANLMRNGADYAVFLNNAQEFDGSDAGARPGEAVSWGKLRLDSTAVKVYSEVTIVFPLIVV 441

Query: 353 ETF 355
             F
Sbjct: 442 HVF 444


>4XJR-A nrPDB
          Length = 454

 Score = 33.5 bits (75), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 76  PLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGV 135
           P         D       L    +   YTSNLI+ G ++ I    Q   + ++      V
Sbjct: 54  PGLLAMPTTVDGCVRTPSLVINDLIYAYTSNLITRGCQD-IGKSYQVLQIGIIT-----V 107

Query: 136 EEDLIKCLAPTYLGEFSLRG 155
             DL+  L P     F++  
Sbjct: 108 NSDLVPDLNPRISHTFNIND 127


>4EX5-A nrPDB
          Length = 529

 Score = 30.1 bits (66), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 10/123 (8%)

Query: 143 LAPTYLGEFSLR---GKELRENGIN-RIGNLLVPNENYCKFED--WLMPILDQMVMEQNT 196
           L    +G F       +  R  G++ R        E Y  + D  WLM   ++++ +   
Sbjct: 264 LKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQ--- 320

Query: 197 EGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLV 256
             V    +  I   G+E++  +  +       I  ++P+ TDG L D  F  S     L 
Sbjct: 321 AAVDALGTATIQYQGRELDLAQPFHRLTITQAIQKYAPSYTDGQLSDDAFLRSEL-KRLG 379

Query: 257 LDI 259
           +D+
Sbjct: 380 VDV 382


>3CKK-A nrPDB
          Length = 235

 Score = 30.1 bits (66), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 9/92 (9%)

Query: 141 KCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFEDWLMPILDQMVMEQNTEGVK 200
           + ++PT L E++          + R+G L+    +  +  DW+    ++  + +      
Sbjct: 144 RIISPTLLAEYAY---------VLRVGGLVYTITDVLELHDWMCTHFEEHPLFERVPLED 194

Query: 201 WTPSKMIARLGKEINNPESVYYWAQKNHIPVF 232
            +   ++  LG      + V     KN   +F
Sbjct: 195 LSEDPVVGHLGTSTEEGKKVLRNGGKNFPAIF 226


>5JTV-A nrPDB
          Length = 594

 Score = 28.1 bits (61), Expect = 5.9,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 136 EEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCK--FEDWLMPILDQMVME 193
           E++L++CL+P     F +    L +  I++   +LV   ++ K  F  + +P L ++   
Sbjct: 447 EDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQG 506

Query: 194 QN 195
           ++
Sbjct: 507 EH 508


>5N2I-A nrPDB
          Length = 232

 Score = 28.1 bits (61), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 281 LGGGVVKHHIANANLMRNGADYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDA 334
           LG G+    + NA      A+    +  A  +DG  +     + V  GKI VD 
Sbjct: 63  LGEGLPVRGMDNA----GAAEAGDVVIVAVPWDGHRALLESLKDVLAGKIVVDC 112


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.312    0.132    0.341 

Lambda     K      H
   0.267   0.0399    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,142,669
Number of Sequences: 36641
Number of extensions: 509956
Number of successful extensions: 1248
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1215
Number of HSP's gapped (non-prelim): 23
length of query: 369
length of database: 10,336,785
effective HSP length: 98
effective length of query: 271
effective length of database: 6,745,967
effective search space: 1828157057
effective search space used: 1828157057
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 60 (27.8 bits)