BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P49366
(369 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
1ROZ-A nrPDB 772 0.0
4P63-A nrPDB 277 6e-75
6DFT-B nrPDB 225 3e-59
6DFT-A nrPDB 175 2e-44
4EX5-A nrPDB 31 0.76
3BZK-A nrPDB 28 6.0
>1ROZ-A nrPDB
Length = 369
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/369 (100%), Positives = 369/369 (100%)
Query: 1 MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG 60
MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG
Sbjct: 1 MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG 60
Query: 61 RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV 120
RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV
Sbjct: 61 RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV 120
Query: 121 QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE 180
QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE
Sbjct: 121 QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE 180
Query: 181 DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS 240
DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS
Sbjct: 181 DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS 240
Query: 241 LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA 300
LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA
Sbjct: 241 LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA 300
Query: 301 DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD 360
DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD
Sbjct: 301 DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD 360
Query: 361 AFMHEKNED 369
AFMHEKNED
Sbjct: 361 AFMHEKNED 369
>4P63-A nrPDB
Length = 342
Score = 277 bits (708), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 149/343 (43%), Positives = 213/343 (62%), Gaps = 28/343 (8%)
Query: 17 VLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEP 76
VLK S + E +V+G + + ++ + GFQAT+ GRA++ I +K+E
Sbjct: 7 VLKKSEKI--EGVEVKGPWLDDAQSLEEVVSYYYRIGFQATHLGRAIE-----IWRKVE- 58
Query: 77 LSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVE 136
+ R +FLGYTSN+ISSG+RE I +LV+ VDV+VTTAGGVE
Sbjct: 59 ------------EKRERGEEIRVFLGYTSNIISSGLREIIAWLVKEKKVDVIVTTAGGVE 106
Query: 137 EDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFEDWLMPILDQMVMEQNT 196
ED IK L P LG++ + ELR+ G+NRIGN+ VPN+ Y +FE +++P ++++ +
Sbjct: 107 EDFIKSLKPFILGDWEVDDAELRKKGVNRIGNIFVPNDRYIEFEKYMIPFFERVLKIEEK 166
Query: 197 EGVKWTPSKMIARLGKEINNP------ESVYYWAQKNHIPVFSPALTDGSLGDMIFF--H 248
T S+ I +G+ ++ +SV YWA KN+IP+F PA+TDGS+GDM++F
Sbjct: 167 LSRPLTASEFIYEMGRYMDEKLGKEKEKSVIYWAYKNNIPIFCPAITDGSIGDMLYFFKE 226
Query: 249 SYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGADYAVYINT 308
++ L++DI D+ +N AI AK T IILGG + KH I NANL R G DYA+YI+T
Sbjct: 227 ERRDSRLIIDIANDIVKLNNLAITAKETASIILGGSLPKHAIINANLFRGGTDYAIYIST 286
Query: 309 AQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLV 351
A +DGS SGA P E VSWGKI+ A V+V+ DA+L+FP+LV
Sbjct: 287 AVPWDGSLSGAPPREGVSWGKIKAKADYVEVWGDATLIFPILV 329
>6DFT-B nrPDB
Length = 342
Score = 225 bits (573), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 129/335 (38%), Positives = 190/335 (56%), Gaps = 36/335 (10%)
Query: 43 RALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLG 102
R +L A+ G +ATN GRA + ++++ L D ++ + L
Sbjct: 29 RCVLNAYPNIGLEATNLGRARR----IVQRALNDNGMDGNK---------------VMLA 69
Query: 103 YTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENG 162
YTSNLISSG+R+T L + N + +VTTAGGVEED+IKCL T +G+F+L LR NG
Sbjct: 70 YTSNLISSGLRDTFACLARENRIGAVVTTAGGVEEDVIKCLGDTLVGDFALNDHALRNNG 129
Query: 163 INRIGNLLVPNENYCKFEDWLMPILDQMVMEQNTE--GVKWTPSKMIARLGKEINN---- 216
+NR+GNLLVPN+NY FED+ +P+L ++ +Q K TPS++IA +G + +
Sbjct: 130 LNRVGNLLVPNDNYRNFEDFFVPLLRRLHEQQRDSRWTTKTTPSQIIAEIGAALESVRPN 189
Query: 217 --PESVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAK 274
S+ YW +N IPVFSPA TDGS+GDMI+F++Y GLV+D V D+R + +
Sbjct: 190 DCGSSLIYWCYRNDIPVFSPAFTDGSMGDMIYFYNYSRKGLVVDPVPDVRRLRQLGCKST 249
Query: 275 CTG---MIILGGGVVKHHIANANLMRN-GADYAVYINTAQEFDGSDSGARPDEAVSWGKI 330
G I+LG G+ KHH L+RN AD VY+ T + DG +S + G +
Sbjct: 250 NVGRITCIVLGAGLPKHH-----LLRNVQADAVVYVTTGSDADGCESSCNVMADRANGLL 304
Query: 331 RVDAQPVKVYADASLVFPLLVAETFAQKMDAFMHE 365
+ V+V+ DA+++ PLL+ + K + E
Sbjct: 305 SPNCDVVRVHGDATIISPLLLLRSSDGKEKVGVRE 339
>6DFT-A nrPDB
Length = 461
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 80/138 (57%), Positives = 106/138 (76%), Gaps = 1/138 (0%)
Query: 219 SVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKN-PGLVLDIVEDLRLINTQAIFAKCTG 277
+V YWA +N +P+FSP+LTDG + + I P L LD+V D+ +N A+ ++ TG
Sbjct: 307 TVLYWAARNGVPIFSPSLTDGDIMEFILTAGDTGVPLLQLDLVADIHRLNRLAMRSRRTG 366
Query: 278 MIILGGGVVKHHIANANLMRNGADYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPV 337
M+ILGGGVVKHH+ NANLMRNGADYAV++N AQEFDGSD+GARP EAVSWGK+R+D+ V
Sbjct: 367 MMILGGGVVKHHVCNANLMRNGADYAVFLNNAQEFDGSDAGARPGEAVSWGKLRLDSTAV 426
Query: 338 KVYADASLVFPLLVAETF 355
KVY++ ++VFPL+V F
Sbjct: 427 KVYSEVTIVFPLIVVHVF 444
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 44 ALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGY 103
A+L + T GFQA+N RA M+ + P D + T+F+G
Sbjct: 39 AVLNRYSTVGFQASNLARAFSICEMMLTPQ-SPSPSLMPTEGDQASESPVMVQPTLFVGV 97
Query: 104 TSNLISSGIRETIRYLV 120
T+NL +G RE IR+L
Sbjct: 98 TANLFGTGCREAIRFLC 114
>4EX5-A nrPDB
Length = 529
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 7/135 (5%)
Query: 118 YLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGIN-RIGNLLVPNENY 176
++ HN +D+ + E L + + + F + + R G++ R E Y
Sbjct: 243 FVTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEI-NRNFRNEGVSPRHNPEFTMMEFY 301
Query: 177 CKFED--WLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSP 234
+ D WLM ++++ + + + + I G+E++ + + I ++P
Sbjct: 302 AAYTDYRWLMDFTERLIRQAAVDALG---TATIQYQGRELDLAQPFHRLTITQAIQKYAP 358
Query: 235 ALTDGSLGDMIFFHS 249
+ TDG L D F S
Sbjct: 359 SYTDGQLSDDAFLRS 373
>3BZK-A nrPDB
Length = 785
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 2 EGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRG-VNYRALLE 47
+G + EA GALA L TL PES R D +G + +A+LE
Sbjct: 118 KGQIALEAGLGALADALFDDPTLVPESEAARFVDAEKGFADVKAVLE 164
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
1ROZ-A nrPDB 620 e-178
4P63-A nrPDB 477 e-135
6DFT-B nrPDB 441 e-124
6DFT-A nrPDB 258 3e-69
Sequences not found previously or not previously below threshold:
4XJR-A nrPDB 34 0.16
4EX5-A nrPDB 30 1.5
3CKK-A nrPDB 30 1.8
5JTV-A nrPDB 28 5.9
5N2I-A nrPDB 28 7.1
CONVERGED!
>1ROZ-A nrPDB
Length = 369
Score = 620 bits (1600), Expect = e-178, Method: Composition-based stats.
Identities = 369/369 (100%), Positives = 369/369 (100%)
Query: 1 MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG 60
MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG
Sbjct: 1 MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG 60
Query: 61 RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV 120
RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV
Sbjct: 61 RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV 120
Query: 121 QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE 180
QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE
Sbjct: 121 QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE 180
Query: 181 DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS 240
DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS
Sbjct: 181 DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS 240
Query: 241 LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA 300
LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA
Sbjct: 241 LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA 300
Query: 301 DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD 360
DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD
Sbjct: 301 DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD 360
Query: 361 AFMHEKNED 369
AFMHEKNED
Sbjct: 361 AFMHEKNED 369
>4P63-A nrPDB
Length = 342
Score = 477 bits (1228), Expect = e-135, Method: Composition-based stats.
Identities = 149/343 (43%), Positives = 213/343 (62%), Gaps = 28/343 (8%)
Query: 17 VLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEP 76
VLK S + E +V+G + + ++ + GFQAT+ GRA++ I +K+E
Sbjct: 7 VLKKSEKI--EGVEVKGPWLDDAQSLEEVVSYYYRIGFQATHLGRAIE-----IWRKVE- 58
Query: 77 LSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVE 136
+ R +FLGYTSN+ISSG+RE I +LV+ VDV+VTTAGGVE
Sbjct: 59 ------------EKRERGEEIRVFLGYTSNIISSGLREIIAWLVKEKKVDVIVTTAGGVE 106
Query: 137 EDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFEDWLMPILDQMVMEQNT 196
ED IK L P LG++ + ELR+ G+NRIGN+ VPN+ Y +FE +++P ++++ +
Sbjct: 107 EDFIKSLKPFILGDWEVDDAELRKKGVNRIGNIFVPNDRYIEFEKYMIPFFERVLKIEEK 166
Query: 197 EGVKWTPSKMIARLGKEINNP------ESVYYWAQKNHIPVFSPALTDGSLGDMIFF--H 248
T S+ I +G+ ++ +SV YWA KN+IP+F PA+TDGS+GDM++F
Sbjct: 167 LSRPLTASEFIYEMGRYMDEKLGKEKEKSVIYWAYKNNIPIFCPAITDGSIGDMLYFFKE 226
Query: 249 SYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGADYAVYINT 308
++ L++DI D+ +N AI AK T IILGG + KH I NANL R G DYA+YI+T
Sbjct: 227 ERRDSRLIIDIANDIVKLNNLAITAKETASIILGGSLPKHAIINANLFRGGTDYAIYIST 286
Query: 309 AQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLV 351
A +DGS SGA P E VSWGKI+ A V+V+ DA+L+FP+LV
Sbjct: 287 AVPWDGSLSGAPPREGVSWGKIKAKADYVEVWGDATLIFPILV 329
>6DFT-B nrPDB
Length = 342
Score = 441 bits (1134), Expect = e-124, Method: Composition-based stats.
Identities = 129/338 (38%), Positives = 190/338 (56%), Gaps = 36/338 (10%)
Query: 40 VNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTI 99
R +L A+ G +ATN GRA + ++++ L D ++ +
Sbjct: 26 EAIRCVLNAYPNIGLEATNLGRARR----IVQRALNDNGMDGNK---------------V 66
Query: 100 FLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELR 159
L YTSNLISSG+R+T L + N + +VTTAGGVEED+IKCL T +G+F+L LR
Sbjct: 67 MLAYTSNLISSGLRDTFACLARENRIGAVVTTAGGVEEDVIKCLGDTLVGDFALNDHALR 126
Query: 160 ENGINRIGNLLVPNENYCKFEDWLMPILDQMVMEQNTE--GVKWTPSKMIARLGKEINN- 216
NG+NR+GNLLVPN+NY FED+ +P+L ++ +Q K TPS++IA +G + +
Sbjct: 127 NNGLNRVGNLLVPNDNYRNFEDFFVPLLRRLHEQQRDSRWTTKTTPSQIIAEIGAALESV 186
Query: 217 -----PESVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLVLDIVEDLRLINTQAI 271
S+ YW +N IPVFSPA TDGS+GDMI+F++Y GLV+D V D+R +
Sbjct: 187 RPNDCGSSLIYWCYRNDIPVFSPAFTDGSMGDMIYFYNYSRKGLVVDPVPDVRRLRQLGC 246
Query: 272 FAKCTG---MIILGGGVVKHHIANANLMRN-GADYAVYINTAQEFDGSDSGARPDEAVSW 327
+ G I+LG G+ KHH L+RN AD VY+ T + DG +S +
Sbjct: 247 KSTNVGRITCIVLGAGLPKHH-----LLRNVQADAVVYVTTGSDADGCESSCNVMADRAN 301
Query: 328 GKIRVDAQPVKVYADASLVFPLLVAETFAQKMDAFMHE 365
G + + V+V+ DA+++ PLL+ + K + E
Sbjct: 302 GLLSPNCDVVRVHGDATIISPLLLLRSSDGKEKVGVRE 339
>6DFT-A nrPDB
Length = 461
Score = 258 bits (659), Expect = 3e-69, Method: Composition-based stats.
Identities = 118/423 (27%), Positives = 179/423 (42%), Gaps = 102/423 (24%)
Query: 31 VRGYDFNRGVNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPLSQDEDQHADLTQS 90
V G + + A+L + T GFQA+N RA M+ + P D
Sbjct: 26 VVGPNQEDLHSAEAVLNRYSTVGFQASNLARAFSICEMMLTPQ-SPSPSLMPTEGDQASE 84
Query: 91 RRPLTSCTIFLGYTSNLISSGIRETIRYLVQH---------------------------- 122
+ T+F+G T+NL +G RE IR+L
Sbjct: 85 SPVMVQPTLFVGVTANLFGTGCREAIRFLCTECVPLPNGVEPATPLDDMAGISCDGTGAL 144
Query: 123 --------NMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKE--------------LRE 160
++ VLV + G +E D+ + L S G E R
Sbjct: 145 KPSPCDSRALIHVLVVSGGAMEHDIRRACESYKL---SRDGAEEEGEQFHHPVERDRSRS 201
Query: 161 NGIN-RIGNLLVPNENYCK---FEDWLMPILDQMVMEQNTEGVKWTPS---KMIARLGKE 213
G + GN+ + F + ++ ++ Q E + + +
Sbjct: 202 KGTDCHFGNVRYNSSGVASRNLFSCVMRCLVKRLAEAQRKEKANREAAPIPEAYYDVCSW 261
Query: 214 INNPESVYYWAQKNHIPVFSPALTD-GSLGD---------------MIFFHSYKN----- 252
P +++Y A +F+ AL + G + D ++++ +
Sbjct: 262 AITPSTLWYMAGLWMADIFTEALQETGEVTDEKVASEEGLKRAKSTVLYWAARNGVPIFS 321
Query: 253 --------------------PGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIAN 292
P L LD+V D+ +N A+ ++ TGM+ILGGGVVKHH+ N
Sbjct: 322 PSLTDGDIMEFILTAGDTGVPLLQLDLVADIHRLNRLAMRSRRTGMMILGGGVVKHHVCN 381
Query: 293 ANLMRNGADYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVA 352
ANLMRNGADYAV++N AQEFDGSD+GARP EAVSWGK+R+D+ VKVY++ ++VFPL+V
Sbjct: 382 ANLMRNGADYAVFLNNAQEFDGSDAGARPGEAVSWGKLRLDSTAVKVYSEVTIVFPLIVV 441
Query: 353 ETF 355
F
Sbjct: 442 HVF 444
>4XJR-A nrPDB
Length = 454
Score = 33.5 bits (75), Expect = 0.16, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 6/80 (7%)
Query: 76 PLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGV 135
P D L + YTSNLI+ G ++ I Q + ++ V
Sbjct: 54 PGLLAMPTTVDGCVRTPSLVINDLIYAYTSNLITRGCQD-IGKSYQVLQIGIIT-----V 107
Query: 136 EEDLIKCLAPTYLGEFSLRG 155
DL+ L P F++
Sbjct: 108 NSDLVPDLNPRISHTFNIND 127
>4EX5-A nrPDB
Length = 529
Score = 30.1 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 10/123 (8%)
Query: 143 LAPTYLGEFSLR---GKELRENGIN-RIGNLLVPNENYCKFED--WLMPILDQMVMEQNT 196
L +G F + R G++ R E Y + D WLM ++++ +
Sbjct: 264 LKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQ--- 320
Query: 197 EGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLV 256
V + I G+E++ + + I ++P+ TDG L D F S L
Sbjct: 321 AAVDALGTATIQYQGRELDLAQPFHRLTITQAIQKYAPSYTDGQLSDDAFLRSEL-KRLG 379
Query: 257 LDI 259
+D+
Sbjct: 380 VDV 382
>3CKK-A nrPDB
Length = 235
Score = 30.1 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 141 KCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFEDWLMPILDQMVMEQNTEGVK 200
+ ++PT L E++ + R+G L+ + + DW+ ++ + +
Sbjct: 144 RIISPTLLAEYAY---------VLRVGGLVYTITDVLELHDWMCTHFEEHPLFERVPLED 194
Query: 201 WTPSKMIARLGKEINNPESVYYWAQKNHIPVF 232
+ ++ LG + V KN +F
Sbjct: 195 LSEDPVVGHLGTSTEEGKKVLRNGGKNFPAIF 226
>5JTV-A nrPDB
Length = 594
Score = 28.1 bits (61), Expect = 5.9, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 136 EEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCK--FEDWLMPILDQMVME 193
E++L++CL+P F + L + I++ +LV ++ K F + +P L ++
Sbjct: 447 EDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQG 506
Query: 194 QN 195
++
Sbjct: 507 EH 508
>5N2I-A nrPDB
Length = 232
Score = 28.1 bits (61), Expect = 7.1, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 281 LGGGVVKHHIANANLMRNGADYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDA 334
LG G+ + NA A+ + A +DG + + V GKI VD
Sbjct: 63 LGEGLPVRGMDNA----GAAEAGDVVIVAVPWDGHRALLESLKDVLAGKIVVDC 112
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.312 0.132 0.341
Lambda K H
0.267 0.0399 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,142,669
Number of Sequences: 36641
Number of extensions: 509956
Number of successful extensions: 1248
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1215
Number of HSP's gapped (non-prelim): 23
length of query: 369
length of database: 10,336,785
effective HSP length: 98
effective length of query: 271
effective length of database: 6,745,967
effective search space: 1828157057
effective search space used: 1828157057
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 60 (27.8 bits)