BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P48598
(259 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
4AXG-A nrPDB 503 e-143
4UEC-A nrPDB 377 e-105
5GW6-A nrPDB 210 5e-55
4DUM-A nrPDB 208 2e-54
5ABX-A nrPDB 189 1e-48
3M94-A nrPDB 187 3e-48
6FC1-A nrPDB 145 2e-35
2IDR-A nrPDB 140 5e-34
2WMC-A nrPDB 140 5e-34
6FBZ-A nrPDB 134 4e-32
5ME5-A nrPDB 133 8e-32
5ME6-A nrPDB 133 1e-31
3HXI-A nrPDB 130 8e-31
2JGB-A nrPDB 128 2e-30
5WB5-A nrPDB 89 2e-18
4B6U-A nrPDB 82 2e-16
6O80-A nrPDB 35 0.031
1PC3-A nrPDB 29 1.9
1NJ2-A nrPDB 29 2.2
1P0H-A nrPDB 28 3.2
>4AXG-A nrPDB
Length = 248
Score = 503 bits (1294), Expect = e-143, Method: Compositional matrix adjust.
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 19 KTSAPSTEQGRPEPPTSAAAPAEAKDVKPKEDPQETGEPAGNTATTTAPAGDDAVRTEHL 78
KTSAPSTEQGRPEPPTSAAAPAEAKDVKPKEDPQETGEPAGNTATTTAPAGDDAVRTEHL
Sbjct: 8 KTSAPSTEQGRPEPPTSAAAPAEAKDVKPKEDPQETGEPAGNTATTTAPAGDDAVRTEHL 67
Query: 79 YKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLF 138
YKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLF
Sbjct: 68 YKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLF 127
Query: 139 KKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINI 198
KKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINI
Sbjct: 128 KKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINI 187
Query: 199 RGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIYT 258
RGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIYT
Sbjct: 188 RGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIYT 247
Query: 259 L 259
L
Sbjct: 248 L 248
>4UEC-A nrPDB
Length = 184
Score = 377 bits (967), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 80 KHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFK 139
KHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFK
Sbjct: 5 KHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFK 64
Query: 140 KNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIR 199
KNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIR
Sbjct: 65 KNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIR 124
Query: 200 GKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIYTL 259
GKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIYTL
Sbjct: 125 GKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIYTL 184
>5GW6-A nrPDB
Length = 196
Score = 210 bits (535), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 99/186 (53%), Positives = 127/186 (68%), Gaps = 2/186 (1%)
Query: 76 EHLYKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDY 135
EH KHPL N W LW+ +ND+SK+W+ I+ FDTVEDFW+LYNHI+ S + G DY
Sbjct: 11 EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDY 70
Query: 136 SLFKKNIRPMWEDAANKQGGRWVITLNKSS-KTDLDNLWLDVLLCLIGEAF-DHSDQICG 193
SLFK I PMWEDAAN +GGRW+ITLNK ++DLD WL+ LLCLIGE+F D+SD +CG
Sbjct: 71 SLFKDGIEPMWEDAANARGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCG 130
Query: 194 AVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNV 253
AV+N+R K +KI+IWT + N EA IG ++ L L + YQ H DT K GS
Sbjct: 131 AVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTT 190
Query: 254 KSIYTL 259
K+ + +
Sbjct: 191 KNRFVV 196
>4DUM-A nrPDB
Length = 240
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/186 (52%), Positives = 126/186 (67%), Gaps = 2/186 (1%)
Query: 76 EHLYKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDY 135
EH KHPL N W LW+ +ND+SK+W+ I+ FDTVEDFW+LYNHI+ S + G DY
Sbjct: 55 EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDY 114
Query: 136 SLFKKNIRPMWEDAANKQGGRWVITLNKSS-KTDLDNLWLDVLLCLIGEAF-DHSDQICG 193
SLFK I PMWED NK+GGRW+ITLNK ++DLD WL+ LLCLIGE+F D+SD +CG
Sbjct: 115 SLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCG 174
Query: 194 AVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNV 253
AV+N+R K +KI+IWT + N EA IG ++ L L + YQ H DT K GS
Sbjct: 175 AVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTT 234
Query: 254 KSIYTL 259
K+ + +
Sbjct: 235 KNRFVV 240
>5ABX-A nrPDB
Length = 190
Score = 189 bits (480), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 86/183 (46%), Positives = 121/183 (66%), Gaps = 5/183 (2%)
Query: 77 HLYKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYS 136
H+ +HPL N W LWYL+ DR+K WED ++ FDTVEDFWSLYNHI+ + GSDY
Sbjct: 3 HMTRHPLQNRWALWYLKADRNKEWEDCLKMVSLFDTVEDFWSLYNHIQSAGGLNWGSDYY 62
Query: 137 LFKKNIRPMWEDAANKQGGRWVITLNKSSKTD----LDNLWLDVLLCLIGEAFD-HSDQI 191
LFK+ I+PMWED N QGGRW++ ++K LD+ WL++L+ ++GE FD + D I
Sbjct: 63 LFKEGIKPMWEDVNNVQGGRWLVVVDKQKLQRRTQLLDHYWLELLMAIVGEQFDEYGDYI 122
Query: 192 CGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGS 251
CGAV+N+R K +K+S+WT D ++ L IG L+ L + L+Y++HKD+ + S
Sbjct: 123 CGAVVNVRQKGDKVSLWTRDATRDDVNLRIGQVLKQKLSIPDTEILRYEVHKDSSARTSS 182
Query: 252 NVK 254
VK
Sbjct: 183 TVK 185
>3M94-A nrPDB
Length = 189
Score = 187 bits (476), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 122/177 (68%), Gaps = 2/177 (1%)
Query: 80 KHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFK 139
+HPL W LWYL+ DRSK WED ++ FDTVEDFWSLYNHI+ S + GSDY LFK
Sbjct: 2 RHPLQCHWALWYLKADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLFK 61
Query: 140 KNIRPMWEDAANKQGGRWVITLNKSSKTD-LDNLWLDVLLCLIGEAF-DHSDQICGAVIN 197
+ I+PMWED N +GGRW++ ++K + LD+ WL++L+ +IGE F D+ + ICGAV+N
Sbjct: 62 EGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAVVN 121
Query: 198 IRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVK 254
+R K +K+S+WT D ++ L IG L+ L + ++Y++HKD+ V+ GS VK
Sbjct: 122 VRQKGDKVSLWTRDSLKDDVNLRIGQILKAKLEIPDTEPIRYEVHKDSSVRTGSMVK 178
>6FC1-A nrPDB
Length = 193
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 103/166 (62%), Gaps = 5/166 (3%)
Query: 80 KHPLMNVWTLWYLEN--DRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSL 137
KHPL WTLWY + D+S+SW D+ +TSF TVE+FW++ +I P E+ L SDY +
Sbjct: 16 KHPLNTAWTLWYTKPAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHV 75
Query: 138 FKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSD-QICGAVI 196
F+ ++RP WED AN +GG+W L + + D+D LWL LL +IGE D D QI G V+
Sbjct: 76 FRNDVRPEWEDEANAKGGKWSFQL-RGAGADIDELWLRTLLAVIGETIDEDDSQINGVVL 134
Query: 197 NIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLH 242
+IR NK ++WTA ++E L IG K + L L + L++ H
Sbjct: 135 SIRKGGNKFALWTA-SEDKEPLLRIGGKFKQVLALTDDGHLEFFPH 179
>2IDR-A nrPDB
Length = 177
Score = 140 bits (354), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 100/168 (59%), Gaps = 10/168 (5%)
Query: 81 HPLMNVWTLWYLENDRSKS----WEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYS 136
HPL N WT W+ +N + KS W + I +F TVEDFW LYN+I PS++ +G+D+
Sbjct: 2 HPLENAWTFWF-DNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFH 60
Query: 137 LFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVI 196
FK I P WED GG+W I+ + D WL LL +IGE FD D+ICGAV+
Sbjct: 61 CFKNKIEPKWEDPICANGGKWTISCGRGKS---DTFWLHTLLAMIGEQFDFGDEICGAVV 117
Query: 197 NIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKD 244
++R K +++IWT + NE A + IG + ++ L +S+ + +H+D
Sbjct: 118 SVRQKQERVAIWTKNAANEAAQISIGKQWKEFLDY--KDSIGFIVHED 163
>2WMC-A nrPDB
Length = 178
Score = 140 bits (353), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 81 HPLMNVWTLWY---LENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSL 137
H L N WT W+ + +W I +F TVE+FWS+YN+I P ++ +G+D+
Sbjct: 3 HLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYC 62
Query: 138 FKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVIN 197
FK I P WED GG+W K D WL LL +IGE FDH D+ICGAV+N
Sbjct: 63 FKHKIEPKWEDPICANGGKWTANYPKGKS---DTSWLYTLLAMIGEQFDHGDEICGAVVN 119
Query: 198 IRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIY 257
+RG++ KISIWT + +NE A + IG + ++ L N ++ + H D K N K+ Y
Sbjct: 120 VRGRAEKISIWTKNASNEAAQVSIGKQWKEFLDY--NETMGFIFHDDAR-KLDRNAKNKY 176
Query: 258 TL 259
+
Sbjct: 177 VV 178
>6FBZ-A nrPDB
Length = 200
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 101/170 (59%), Gaps = 5/170 (2%)
Query: 80 KHPLMNVWTLWYLE--NDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSL 137
KHPL WTLW+ + + + +W D+ ++ +F++VE+FW +YN+I P SE+ + SDY L
Sbjct: 16 KHPLSCRWTLWFTKPASGKGDNWNDLLKKVITFESVEEFWGIYNNIAPVSELAVKSDYHL 75
Query: 138 FKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSD--QICGAV 195
FK+ +RP WED NK GG+W ++D LWL +L IGE + + ++ G V
Sbjct: 76 FKEGVRPEWEDPQNKHGGKWAYQFKDKRSVNIDELWLHTMLAAIGETLEDEEDGEVMGVV 135
Query: 196 INIRGKSNKISIWT-ADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKD 244
+N+R +I +WT ++E + IG +L++ L+L N +++ H +
Sbjct: 136 VNVRKGFYRIGVWTRTTEKSKEILMNIGRRLKEVLKLPPNEMVEFSGHTE 185
>5ME5-A nrPDB
Length = 237
Score = 133 bits (334), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 103/188 (54%), Gaps = 16/188 (8%)
Query: 68 AGDDAVRTEHLYK------HPLMNVWTLWYLENDRSKS----WEDMQNEITSFDTVEDFW 117
GDD + + +L HPL + WT W+ +N +KS W I +F TVE+FW
Sbjct: 43 VGDDDLDSSNLSASLVHQPHPLEHSWTFWF-DNPSAKSKQATWGASIRPIYTFSTVEEFW 101
Query: 118 SLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVL 177
S+YN+I PS++ + +D FK I P WED GG+W + + DN WL L
Sbjct: 102 SVYNNIHHPSKLAMRADLYCFKHKIEPKWEDPVCANGGKWTVNFPRGKS---DNGWLYTL 158
Query: 178 LCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSL 237
L +IGE FD D+ICGAV+N+R +KISIWT + +NE A IG + ++ L N S+
Sbjct: 159 LAMIGEQFDCGDEICGAVVNVRSGQDKISIWTKNASNEAAQASIGKQWKEFLDY--NESI 216
Query: 238 QYQLHKDT 245
+ H D
Sbjct: 217 GFIFHDDA 224
>5ME6-A nrPDB
Length = 186
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 96/169 (56%), Gaps = 10/169 (5%)
Query: 81 HPLMNVWTLWYLENDRSKS----WEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYS 136
HPL + WT W+ +N +KS W I +F TVE+FWS+YN+I PS++ + +D
Sbjct: 11 HPLEHSWTFWF-DNPSAKSKQATWGASIRPIYTFSTVEEFWSVYNNIHHPSKLAMRADLY 69
Query: 137 LFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVI 196
FK I P WED GG+W + + DN WL LL +IGE FD D+ICGAV+
Sbjct: 70 CFKHKIEPKWEDPVCANGGKWTVNFPRGKS---DNGWLYTLLAMIGEQFDCGDEICGAVV 126
Query: 197 NIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDT 245
N+R +KISIWT + +NE A IG + ++ L N S+ + H D
Sbjct: 127 NVRSGQDKISIWTKNASNEAAQASIGKQWKEFLDY--NESIGFIFHDDA 173
>3HXI-A nrPDB
Length = 189
Score = 130 bits (326), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 5/156 (3%)
Query: 79 YKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLF 138
+ HPL + W+ + + ++ W++ ++ +F T+EDFWS+ H P EI G D +F
Sbjct: 8 FPHPLQDSWSYYLFQFRKALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLYMF 67
Query: 139 KKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSD---QICGAV 195
K +I P WED N+ GGRW+I N +++ D+D LW ++L+ LIG +D + QICGAV
Sbjct: 68 KSDIMPKWEDPKNENGGRWLI--NVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAV 125
Query: 196 INIRGKSNKISIWTADGNNEEAALEIGHKLRDALRL 231
R + +K+S+W N EE L IG ++++ L L
Sbjct: 126 FQPRSRGSKLSVWLTSDNEEETILSIGRRIKERLEL 161
>2JGB-A nrPDB
Length = 195
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 80 KHPLMNVWTLWYLEND-----RSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSD 134
+HPL +T WY S+S+E +I +F +VE FW Y+H+ P ++ SD
Sbjct: 14 EHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSD 73
Query: 135 YSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGA 194
+ LFK+ I+PMWED ANK GG+W+I L K + W +++L ++GE F ++ICGA
Sbjct: 74 FHLFKEGIKPMWEDDANKNGGKWIIRLRKGLAS---RCWENLILAMLGEQFMVGEEICGA 130
Query: 195 VINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQG 250
V+++R + + ISIW +++ I LR L L N ++Y+ H D++ G
Sbjct: 131 VVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSIKMPG 186
>5WB5-A nrPDB
Length = 219
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 100/219 (45%), Gaps = 35/219 (15%)
Query: 59 GNTATTTAPAGDDAVRTEHLYKHPLMNVWTLWY--LENDRSKSWEDMQNEITSFDTVEDF 116
G + +AP+ + +L H L WTLWY +++WE I + +VE+F
Sbjct: 1 GAMGSMSAPSSVPPHKMANL--HKLQRAWTLWYDSPSTYNTENWEMSLVPIMTVHSVEEF 58
Query: 117 WSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSS----------- 165
+ + ++KP ++ S Y F++ ++PMWED ANK+GG+ + L+ +S
Sbjct: 59 FVMLRYMKPLHALRTSSQYHFFQEGVKPMWEDPANKKGGKLWVNLDITSANGRSSNNNTS 118
Query: 166 ------------KTDLDNLWLDVLLCLIGEAFDHSDQ--------ICGAVINIRGKSNKI 205
KTDLD W +VL+ +GE D D+ + G V++ R N++
Sbjct: 119 GTSAADGSAAEAKTDLDKAWENVLMATVGEYLDCVDKKDTPTEPFVTGIVMSKRKYHNRL 178
Query: 206 SIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKD 244
++W +D + + + L L S+ + H +
Sbjct: 179 AVWVSDASATDKIEALKKALTKEASLAPIASMVFTKHGE 217
>4B6U-A nrPDB
Length = 207
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 15/182 (8%)
Query: 82 PLMNVWTLWY---LENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLF 138
PL + WT W L + +I + TV+ FWS+YN+I P + + L Y L
Sbjct: 31 PLHSPWTFWLDRSLPGATAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLPLRCSYHLM 90
Query: 139 KKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHS----DQICGA 194
+ RP+WE+ +N +GG W + + K S + +W ++LL IGE F D+I G
Sbjct: 91 RGERRPLWEEESNAKGGVWKMKVPKDSTS---TVWKELLLATIGEQFTDCAAADDEIIGV 147
Query: 195 VINIRGKSNKISIWTADGN--NEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSN 252
+++R + + + +W + + E LE H+L + ++ Y+ H++ +G
Sbjct: 148 SVSVRDREDVVQVWNVNASLVGEATVLEKIHQLLPHIAF---KAVFYKPHEEHHAFEGGR 204
Query: 253 VK 254
K
Sbjct: 205 GK 206
>6O80-A nrPDB
Length = 222
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 28/154 (18%)
Query: 81 HPLMNVWTLWYL------------ENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSE 128
H L + W L Y+ + D +K+ + +Q + TVE+FWS N + +
Sbjct: 28 HALKDPWFLSYIPQLTPDTVKYDFKGDWNKAKQALQQPLDYIRTVEEFWSTINSLPKLHQ 87
Query: 129 IKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDH- 187
+ GS + + N+ +E N G R ++ L K+S + + VL ++GE +
Sbjct: 88 LGNGSTFIFARNNVDASYEAFPN--GTRVLVDLYKASVAEKGMDF--VLSSVLGEGLTYD 143
Query: 188 ---SDQICGAVINIRGKSN-------KISIWTAD 211
++C V+ + + N ++ +W +D
Sbjct: 144 VFNGKKVCD-VVRLSSRPNQESPELVRLEVWLSD 176
>1PC3-A nrPDB
Length = 350
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 46 KPKEDPQETGEPAGNTATTTAPAGDDAVRTEHLYKHPLMNVW 87
KP ETG AG ATT A + T +PL N+W
Sbjct: 3 KPPSGSPETGAGAGTVATTPASSPVTLAETGSTLLYPLFNLW 44
>1NJ2-A nrPDB
Length = 501
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 92 LENDRSKSWEDMQNEITSFDTVED 115
LEN R+++WE M++EI +T+E+
Sbjct: 416 LENLRTRAWERMESEIREAETLEE 439
>1P0H-A nrPDB
Length = 318
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 46 KPKEDPQETGEPAGNTATTTAPAGDDA----VRTEHLYKHPLMNVWTLWYLENDRSKSWE 101
+P D E P G T A DDA V HP WT L R ++W
Sbjct: 141 RPLRDIPEPTIPDGVVIRTYAGTSDDAELLRVNNAAFAGHPEQGGWTAVQLAERRGEAWF 200
Query: 102 DMQNEITSF 110
D I +F
Sbjct: 201 DPDGLILAF 209
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
4AXG-A nrPDB 380 e-106
4DUM-A nrPDB 271 2e-73
5GW6-A nrPDB 271 2e-73
4UEC-A nrPDB 271 2e-73
5ABX-A nrPDB 267 2e-72
3M94-A nrPDB 266 5e-72
5ME5-A nrPDB 263 5e-71
5ME6-A nrPDB 253 4e-68
2WMC-A nrPDB 251 3e-67
2IDR-A nrPDB 243 8e-65
2JGB-A nrPDB 238 2e-63
6FBZ-A nrPDB 233 8e-62
6FC1-A nrPDB 214 2e-56
5WB5-A nrPDB 210 4e-55
3HXI-A nrPDB 210 5e-55
4B6U-A nrPDB 198 2e-51
Sequences not found previously or not previously below threshold:
6O80-A nrPDB 60 1e-09
1P0H-A nrPDB 30 0.80
1RYX-A nrPDB 30 1.1
1PC3-A nrPDB 30 1.3
5YQS-A nrPDB 29 2.7
1UAR-A nrPDB 28 3.9
4O8A-A nrPDB 27 9.2
1TJ0-A nrPDB 27 9.2
>4AXG-A nrPDB
Length = 248
Score = 380 bits (975), Expect = e-106, Method: Composition-based stats.
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 19 KTSAPSTEQGRPEPPTSAAAPAEAKDVKPKEDPQETGEPAGNTATTTAPAGDDAVRTEHL 78
KTSAPSTEQGRPEPPTSAAAPAEAKDVKPKEDPQETGEPAGNTATTTAPAGDDAVRTEHL
Sbjct: 8 KTSAPSTEQGRPEPPTSAAAPAEAKDVKPKEDPQETGEPAGNTATTTAPAGDDAVRTEHL 67
Query: 79 YKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLF 138
YKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLF
Sbjct: 68 YKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLF 127
Query: 139 KKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINI 198
KKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINI
Sbjct: 128 KKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINI 187
Query: 199 RGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIYT 258
RGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIYT
Sbjct: 188 RGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIYT 247
Query: 259 L 259
L
Sbjct: 248 L 248
>4DUM-A nrPDB
Length = 240
Score = 271 bits (693), Expect = 2e-73, Method: Composition-based stats.
Identities = 98/186 (52%), Positives = 126/186 (67%), Gaps = 2/186 (1%)
Query: 76 EHLYKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDY 135
EH KHPL N W LW+ +ND+SK+W+ I+ FDTVEDFW+LYNHI+ S + G DY
Sbjct: 55 EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDY 114
Query: 136 SLFKKNIRPMWEDAANKQGGRWVITLNK-SSKTDLDNLWLDVLLCLIGEAF-DHSDQICG 193
SLFK I PMWED NK+GGRW+ITLNK ++DLD WL+ LLCLIGE+F D+SD +CG
Sbjct: 115 SLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCG 174
Query: 194 AVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNV 253
AV+N+R K +KI+IWT + N EA IG ++ L L + YQ H DT K GS
Sbjct: 175 AVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTT 234
Query: 254 KSIYTL 259
K+ + +
Sbjct: 235 KNRFVV 240
>5GW6-A nrPDB
Length = 196
Score = 271 bits (693), Expect = 2e-73, Method: Composition-based stats.
Identities = 99/186 (53%), Positives = 127/186 (68%), Gaps = 2/186 (1%)
Query: 76 EHLYKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDY 135
EH KHPL N W LW+ +ND+SK+W+ I+ FDTVEDFW+LYNHI+ S + G DY
Sbjct: 11 EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDY 70
Query: 136 SLFKKNIRPMWEDAANKQGGRWVITLNK-SSKTDLDNLWLDVLLCLIGEAF-DHSDQICG 193
SLFK I PMWEDAAN +GGRW+ITLNK ++DLD WL+ LLCLIGE+F D+SD +CG
Sbjct: 71 SLFKDGIEPMWEDAANARGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCG 130
Query: 194 AVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNV 253
AV+N+R K +KI+IWT + N EA IG ++ L L + YQ H DT K GS
Sbjct: 131 AVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTT 190
Query: 254 KSIYTL 259
K+ + +
Sbjct: 191 KNRFVV 196
>4UEC-A nrPDB
Length = 184
Score = 271 bits (692), Expect = 2e-73, Method: Composition-based stats.
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 80 KHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFK 139
KHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFK
Sbjct: 5 KHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFK 64
Query: 140 KNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIR 199
KNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIR
Sbjct: 65 KNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIR 124
Query: 200 GKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIYTL 259
GKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIYTL
Sbjct: 125 GKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIYTL 184
>5ABX-A nrPDB
Length = 190
Score = 267 bits (683), Expect = 2e-72, Method: Composition-based stats.
Identities = 87/188 (46%), Positives = 122/188 (64%), Gaps = 5/188 (2%)
Query: 77 HLYKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYS 136
H+ +HPL N W LWYL+ DR+K WED ++ FDTVEDFWSLYNHI+ + GSDY
Sbjct: 3 HMTRHPLQNRWALWYLKADRNKEWEDCLKMVSLFDTVEDFWSLYNHIQSAGGLNWGSDYY 62
Query: 137 LFKKNIRPMWEDAANKQGGRWVITLNKSSKTD----LDNLWLDVLLCLIGEAFD-HSDQI 191
LFK+ I+PMWED N QGGRW++ ++K LD+ WL++L+ ++GE FD + D I
Sbjct: 63 LFKEGIKPMWEDVNNVQGGRWLVVVDKQKLQRRTQLLDHYWLELLMAIVGEQFDEYGDYI 122
Query: 192 CGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGS 251
CGAV+N+R K +K+S+WT D ++ L IG L+ L + L+Y++HKD+ + S
Sbjct: 123 CGAVVNVRQKGDKVSLWTRDATRDDVNLRIGQVLKQKLSIPDTEILRYEVHKDSSARTSS 182
Query: 252 NVKSIYTL 259
VK L
Sbjct: 183 TVKPRICL 190
>3M94-A nrPDB
Length = 189
Score = 266 bits (681), Expect = 5e-72, Method: Composition-based stats.
Identities = 86/182 (47%), Positives = 123/182 (67%), Gaps = 2/182 (1%)
Query: 80 KHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFK 139
+HPL W LWYL+ DRSK WED ++ FDTVEDFWSLYNHI+ S + GSDY LFK
Sbjct: 2 RHPLQCHWALWYLKADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLFK 61
Query: 140 KNIRPMWEDAANKQGGRWVITLNKSSKTD-LDNLWLDVLLCLIGEAF-DHSDQICGAVIN 197
+ I+PMWED N +GGRW++ ++K + LD+ WL++L+ +IGE F D+ + ICGAV+N
Sbjct: 62 EGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAVVN 121
Query: 198 IRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIY 257
+R K +K+S+WT D ++ L IG L+ L + ++Y++HKD+ V+ GS VK
Sbjct: 122 VRQKGDKVSLWTRDSLKDDVNLRIGQILKAKLEIPDTEPIRYEVHKDSSVRTGSMVKPRI 181
Query: 258 TL 259
+
Sbjct: 182 VI 183
>5ME5-A nrPDB
Length = 237
Score = 263 bits (672), Expect = 5e-71, Method: Composition-based stats.
Identities = 72/201 (35%), Positives = 105/201 (52%), Gaps = 15/201 (7%)
Query: 68 AGDDAVRTEHLY------KHPLMNVWTLWY---LENDRSKSWEDMQNEITSFDTVEDFWS 118
GDD + + +L HPL + WT W+ + +W I +F TVE+FWS
Sbjct: 43 VGDDDLDSSNLSASLVHQPHPLEHSWTFWFDNPSAKSKQATWGASIRPIYTFSTVEEFWS 102
Query: 119 LYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLL 178
+YN+I PS++ + +D FK I P WED GG+W + + DN WL LL
Sbjct: 103 VYNNIHHPSKLAMRADLYCFKHKIEPKWEDPVCANGGKWTVNFPRGKS---DNGWLYTLL 159
Query: 179 CLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQ 238
+IGE FD D+ICGAV+N+R +KISIWT + +NE A IG + ++ L N S+
Sbjct: 160 AMIGEQFDCGDEICGAVVNVRSGQDKISIWTKNASNEAAQASIGKQWKEFLDY--NESIG 217
Query: 239 YQLHKDTMVKQGSNVKSIYTL 259
+ H D + K+ Y +
Sbjct: 218 FIFHDDAKKF-DRHAKNKYMV 237
>5ME6-A nrPDB
Length = 186
Score = 253 bits (647), Expect = 4e-68, Method: Composition-based stats.
Identities = 68/183 (37%), Positives = 98/183 (53%), Gaps = 9/183 (4%)
Query: 80 KHPLMNVWTLWY---LENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYS 136
HPL + WT W+ + +W I +F TVE+FWS+YN+I PS++ + +D
Sbjct: 10 PHPLEHSWTFWFDNPSAKSKQATWGASIRPIYTFSTVEEFWSVYNNIHHPSKLAMRADLY 69
Query: 137 LFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVI 196
FK I P WED GG+W + + DN WL LL +IGE FD D+ICGAV+
Sbjct: 70 CFKHKIEPKWEDPVCANGGKWTVNFPRGKS---DNGWLYTLLAMIGEQFDCGDEICGAVV 126
Query: 197 NIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSI 256
N+R +KISIWT + +NE A IG + ++ L N S+ + H D + K+
Sbjct: 127 NVRSGQDKISIWTKNASNEAAQASIGKQWKEFLDY--NESIGFIFHDDAKKF-DRHAKNK 183
Query: 257 YTL 259
Y +
Sbjct: 184 YMV 186
>2WMC-A nrPDB
Length = 178
Score = 251 bits (640), Expect = 3e-67, Method: Composition-based stats.
Identities = 71/183 (38%), Positives = 101/183 (55%), Gaps = 9/183 (4%)
Query: 80 KHPLMNVWTLWY---LENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYS 136
H L N WT W+ + +W I +F TVE+FWS+YN+I P ++ +G+D+
Sbjct: 2 PHLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFY 61
Query: 137 LFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVI 196
FK I P WED GG+W K D WL LL +IGE FDH D+ICGAV+
Sbjct: 62 CFKHKIEPKWEDPICANGGKWTANYPKGKS---DTSWLYTLLAMIGEQFDHGDEICGAVV 118
Query: 197 NIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSI 256
N+RG++ KISIWT + +NE A + IG + ++ L N ++ + H D K N K+
Sbjct: 119 NVRGRAEKISIWTKNASNEAAQVSIGKQWKEFLDY--NETMGFIFHDDAR-KLDRNAKNK 175
Query: 257 YTL 259
Y +
Sbjct: 176 YVV 178
>2IDR-A nrPDB
Length = 177
Score = 243 bits (619), Expect = 8e-65, Method: Composition-based stats.
Identities = 71/184 (38%), Positives = 106/184 (57%), Gaps = 11/184 (5%)
Query: 80 KHPLMNVWTLWYLENDRSKS----WEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDY 135
HPL N WT W+ +N + KS W + I +F TVEDFW LYN+I PS++ +G+D+
Sbjct: 1 AHPLENAWTFWF-DNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADF 59
Query: 136 SLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAV 195
FK I P WED GG+W I+ + D WL LL +IGE FD D+ICGAV
Sbjct: 60 HCFKNKIEPKWEDPICANGGKWTISCGRGKS---DTFWLHTLLAMIGEQFDFGDEICGAV 116
Query: 196 INIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKS 255
+++R K +++IWT + NE A + IG + ++ L +S+ + +H+D + K+
Sbjct: 117 VSVRQKQERVAIWTKNAANEAAQISIGKQWKEFLDY--KDSIGFIVHEDA-KRSDKGPKN 173
Query: 256 IYTL 259
YT+
Sbjct: 174 RYTV 177
>2JGB-A nrPDB
Length = 195
Score = 238 bits (606), Expect = 2e-63, Method: Composition-based stats.
Identities = 63/182 (34%), Positives = 100/182 (54%), Gaps = 8/182 (4%)
Query: 80 KHPLMNVWTLWYLE-----NDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSD 134
+HPL +T WY S+S+E +I +F +VE FW Y+H+ P ++ SD
Sbjct: 14 EHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSD 73
Query: 135 YSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGA 194
+ LFK+ I+PMWED ANK GG+W+I L K + W +++L ++GE F ++ICGA
Sbjct: 74 FHLFKEGIKPMWEDDANKNGGKWIIRLRKGLAS---RCWENLILAMLGEQFMVGEEICGA 130
Query: 195 VINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVK 254
V+++R + + ISIW +++ I LR L L N ++Y+ H D++ G
Sbjct: 131 VVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSIKMPGRLGP 190
Query: 255 SI 256
Sbjct: 191 QR 192
>6FBZ-A nrPDB
Length = 200
Score = 233 bits (593), Expect = 8e-62, Method: Composition-based stats.
Identities = 63/193 (32%), Positives = 106/193 (54%), Gaps = 6/193 (3%)
Query: 73 VRTEHL-YKHPLMNVWTLWYLENDRSK--SWEDMQNEITSFDTVEDFWSLYNHIKPPSEI 129
E+ KHPL WTLW+ + K +W D+ ++ +F++VE+FW +YN+I P SE+
Sbjct: 8 HDKENFNVKHPLSCRWTLWFTKPASGKGDNWNDLLKKVITFESVEEFWGIYNNIAPVSEL 67
Query: 130 KLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSD 189
+ SDY LFK+ +RP WED NK GG+W ++D LWL +L IGE + +
Sbjct: 68 AVKSDYHLFKEGVRPEWEDPQNKHGGKWAYQFKDKRSVNIDELWLHTMLAAIGETLEDEE 127
Query: 190 --QICGAVINIRGKSNKISIWT-ADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTM 246
++ G V+N+R +I +WT ++E + IG +L++ L+L N +++ H +
Sbjct: 128 DGEVMGVVVNVRKGFYRIGVWTRTTEKSKEILMNIGRRLKEVLKLPPNEMVEFSGHTEAA 187
Query: 247 VKQGSNVKSIYTL 259
+ K+ +
Sbjct: 188 QAGSTRAKARMVV 200
>6FC1-A nrPDB
Length = 193
Score = 214 bits (546), Expect = 2e-56, Method: Composition-based stats.
Identities = 74/179 (41%), Positives = 106/179 (59%), Gaps = 6/179 (3%)
Query: 74 RTEHL-YKHPLMNVWTLWYLEN--DRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIK 130
+ H KHPL WTLWY + D+S+SW D+ +TSF TVE+FW++ +I P E+
Sbjct: 9 DSAHFDVKHPLNTAWTLWYTKPAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELP 68
Query: 131 LGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSD- 189
L SDY +F+ ++RP WED AN +GG+W L + + D+D LWL LL +IGE D D
Sbjct: 69 LKSDYHVFRNDVRPEWEDEANAKGGKWSFQL-RGAGADIDELWLRTLLAVIGETIDEDDS 127
Query: 190 QICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVK 248
QI G V++IR NK ++WTA ++E L IG K + L L + L++ H +
Sbjct: 128 QINGVVLSIRKGGNKFALWTA-SEDKEPLLRIGGKFKQVLALTDDGHLEFFPHSSANGR 185
>5WB5-A nrPDB
Length = 219
Score = 210 bits (535), Expect = 4e-55, Method: Composition-based stats.
Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 35/221 (15%)
Query: 59 GNTATTTAPAGDDAVRTEHLYKHPLMNVWTLWY--LENDRSKSWEDMQNEITSFDTVEDF 116
G + +AP+ + +L H L WTLWY +++WE I + +VE+F
Sbjct: 1 GAMGSMSAPSSVPPHKMANL--HKLQRAWTLWYDSPSTYNTENWEMSLVPIMTVHSVEEF 58
Query: 117 WSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSS----------- 165
+ + ++KP ++ S Y F++ ++PMWED ANK+GG+ + L+ +S
Sbjct: 59 FVMLRYMKPLHALRTSSQYHFFQEGVKPMWEDPANKKGGKLWVNLDITSANGRSSNNNTS 118
Query: 166 ------------KTDLDNLWLDVLLCLIGEAFDHSDQ--------ICGAVINIRGKSNKI 205
KTDLD W +VL+ +GE D D+ + G V++ R N++
Sbjct: 119 GTSAADGSAAEAKTDLDKAWENVLMATVGEYLDCVDKKDTPTEPFVTGIVMSKRKYHNRL 178
Query: 206 SIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTM 246
++W +D + + + L L S+ + H +
Sbjct: 179 AVWVSDASATDKIEALKKALTKEASLAPIASMVFTKHGEAS 219
>3HXI-A nrPDB
Length = 189
Score = 210 bits (534), Expect = 5e-55, Method: Composition-based stats.
Identities = 59/177 (33%), Positives = 100/177 (56%), Gaps = 7/177 (3%)
Query: 79 YKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLF 138
+ HPL + W+ + + ++ W++ ++ +F T+EDFWS+ H P EI G D +F
Sbjct: 8 FPHPLQDSWSYYLFQFRKALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLYMF 67
Query: 139 KKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQ---ICGAV 195
K +I P WED N+ GGRW+I + +++ D+D LW ++L+ LIG +D ++ ICGAV
Sbjct: 68 KSDIMPKWEDPKNENGGRWLINV--TARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAV 125
Query: 196 INIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSN 252
R + +K+S+W N EE L IG ++++ L L + +Q D + +
Sbjct: 126 FQPRSRGSKLSVWLTSDNEEETILSIGRRIKERLELEDT--IYFQPVSDQRSQTRGS 180
>4B6U-A nrPDB
Length = 207
Score = 198 bits (504), Expect = 2e-51, Method: Composition-based stats.
Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 15/183 (8%)
Query: 82 PLMNVWTLWY---LENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLF 138
PL + WT W L + +I + TV+ FWS+YN+I P + + L Y L
Sbjct: 31 PLHSPWTFWLDRSLPGATAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLPLRCSYHLM 90
Query: 139 KKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHS----DQICGA 194
+ RP+WE+ +N +GG W + + K S + +W ++LL IGE F D+I G
Sbjct: 91 RGERRPLWEEESNAKGGVWKMKVPKDSTS---TVWKELLLATIGEQFTDCAAADDEIIGV 147
Query: 195 VINIRGKSNKISIWTADGN--NEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSN 252
+++R + + + +W + + E LE H+L + ++ Y+ H++ +G
Sbjct: 148 SVSVRDREDVVQVWNVNASLVGEATVLEKIHQLLPHIAF---KAVFYKPHEEHHAFEGGR 204
Query: 253 VKS 255
K
Sbjct: 205 GKH 207
>6O80-A nrPDB
Length = 222
Score = 59.7 bits (143), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/201 (21%), Positives = 77/201 (38%), Gaps = 28/201 (13%)
Query: 79 YKHPLMNVWTLWY------------LENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPP 126
H L + W L Y + D +K+ + +Q + TVE+FWS N +
Sbjct: 26 TAHALKDPWFLSYIPQLTPDTVKYDFKGDWNKAKQALQQPLDYIRTVEEFWSTINSLPKL 85
Query: 127 SEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFD 186
++ GS + + N+ +E A G R ++ L K+S + VL ++GE
Sbjct: 86 HQLGNGSTFIFARNNVDASYE--AFPNGTRVLVDLYKASVA--EKGMDFVLSSVLGEGLT 141
Query: 187 H----SDQICGAV-INIRGKSN-----KISIWTADGN-NEEAALEIGHKLRDA-LRLGRN 234
+ ++C V ++ R ++ +W +D ++ I L +A L
Sbjct: 142 YDVFNGKKVCDVVRLSSRPNQESPELVRLEVWLSDQLYAKDVIPYIRKGLNEAGLSFTDF 201
Query: 235 NSLQYQLHKDTMVKQGSNVKS 255
+ KD S KS
Sbjct: 202 IMGESTFEKDKKKPSVSGAKS 222
>1P0H-A nrPDB
Length = 318
Score = 30.5 bits (67), Expect = 0.80, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 46 KPKEDPQETGEPAGNTATTTAPAGDDA----VRTEHLYKHPLMNVWTLWYLENDRSKSWE 101
+P D E P G T A DDA V HP WT L R ++W
Sbjct: 141 RPLRDIPEPTIPDGVVIRTYAGTSDDAELLRVNNAAFAGHPEQGGWTAVQLAERRGEAWF 200
Query: 102 DMQNEITSF 110
D I +F
Sbjct: 201 DPDGLILAF 209
>1RYX-A nrPDB
Length = 686
Score = 30.1 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 113 VEDFWSLYNHIKPPSEIKLGSDYSLF 138
VED WS + + + SD+ LF
Sbjct: 260 VEDIWSFLSKAQSDFGVDTKSDFHLF 285
>1PC3-A nrPDB
Length = 350
Score = 29.7 bits (65), Expect = 1.3, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 46 KPKEDPQETGEPAGNTATTTAPAGDDAVRTEHLYKHPLMNVW 87
KP ETG AG ATT A + T +PL N+W
Sbjct: 3 KPPSGSPETGAGAGTVATTPASSPVTLAETGSTLLYPLFNLW 44
>5YQS-A nrPDB
Length = 765
Score = 28.5 bits (62), Expect = 2.7, Method: Composition-based stats.
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 117 WSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDL 169
WS+ + I +DY + +R W G ++ +T + + +
Sbjct: 240 WSIMSAYHSYDGIPAVADYHTLTEILREEW-------GYKYWVTSDAGASDRV 285
>1UAR-A nrPDB
Length = 285
Score = 28.2 bits (61), Expect = 3.9, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 13/107 (12%)
Query: 26 EQGRP-------EPPTSAAAPAEAKDVKPKEDPQ-----ETGEPAGNTATTTAPAGDDAV 73
E+GRP PP P + ++ D + E G +P
Sbjct: 120 EEGRPLTTEVPSYPPGRYEVPYRDESIRAYRDDVLEHIIKVKEGKGALVDVRSPQEYRG- 178
Query: 74 RTEHLYKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLY 120
H+ +P ++ ++ W N +F + E+ +LY
Sbjct: 179 ELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEELRALY 225
>4O8A-A nrPDB
Length = 687
Score = 27.0 bits (58), Expect = 9.2, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 178 LCLIGEAFDHSDQICGAVINIRGKSNK 204
+ L+GE F + I A+ N R K
Sbjct: 252 MRLMGEQFVTGETIAEALANARKLEEK 278
>1TJ0-A nrPDB
Length = 602
Score = 27.0 bits (58), Expect = 9.2, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 178 LCLIGEAFDHSDQICGAVINIRGKSNK 204
+ L+GE F + I A+ N R K
Sbjct: 167 MRLMGEQFVTGETIAEALANARKLEEK 193
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.309 0.129 0.388
Lambda K H
0.267 0.0398 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,068,973
Number of Sequences: 36641
Number of extensions: 457819
Number of successful extensions: 1003
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 879
Number of HSP's gapped (non-prelim): 69
length of query: 259
length of database: 10,336,785
effective HSP length: 95
effective length of query: 164
effective length of database: 6,855,890
effective search space: 1124365960
effective search space used: 1124365960
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (27.0 bits)