BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P47822 (140 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 5OQM-n nrPDB 283 2e-77 5U0P-U nrPDB 62 6e-11 4Z53-A nrPDB 33 0.049 4KPF-A nrPDB 33 0.049 5M1S-A nrPDB 30 0.43 1PT7-A nrPDB 29 0.56 2DHR-A nrPDB 28 1.0 3RFY-A nrPDB 28 1.0 5N0L-A nrPDB 28 1.1 5YZ0-C nrPDB 27 2.2 6D8G-A nrPDB 27 2.4 5JD3-A nrPDB 27 3.0 2WXX-A nrPDB 27 3.0 3EQ1-A nrPDB 26 4.5 1G3N-A nrPDB 25 9.8 >5OQM-n nrPDB Length = 140 Score = 283 bits (725), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 140/140 (100%), Positives = 140/140 (100%) Query: 1 MTDRLTQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTID 60 MTDRLTQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTID Sbjct: 1 MTDRLTQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTID 60 Query: 61 ELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLR 120 ELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLR Sbjct: 61 ELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLR 120 Query: 121 HVDSLIEDFVDGIANSKKST 140 HVDSLIEDFVDGIANSKKST Sbjct: 121 HVDSLIEDFVDGIANSKKST 140 >5U0P-U nrPDB Length = 138 Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 1/129 (0%) Query: 1 MTDRLTQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTID 60 M R TQLQ +D++ QF ++++Y+ +H F L E ++SD + EE Sbjct: 1 MACRCTQLQDTIDEVATQFYSSIHYLSSHHDFVPLPGQE-KVSDSKVNPISAEELQFAQR 59 Query: 61 ELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLR 120 +L+ D++ K QI+ LI+ LPG+ + + QL KI LQ + E + E+ + E L Sbjct: 60 DLAKDLVTKFMQIDTLINQLPGISTAPKHQLEKIKKLQNSIEEKQLERKSLESENEDLKL 119 Query: 121 HVDSLIEDF 129 + IE F Sbjct: 120 QLAKRIETF 128 >4Z53-A nrPDB Length = 742 Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 31 GFERLTVN-EPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEE 89 F L VN +S +AT +PP + ID I T +I+KL++ LPG D Sbjct: 404 AFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA 463 Query: 90 QLRKIDMLQK 99 ++ D ++K Sbjct: 464 IIQGRDEIKK 473 >4KPF-A nrPDB Length = 496 Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 31 GFERLTVN-EPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEE 89 F L VN +S +AT +PP + ID I T +I+KL++ LPG D Sbjct: 158 AFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA 217 Query: 90 QLRKIDMLQK 99 ++ D ++K Sbjct: 218 IIQGRDEIKK 227 >5M1S-A nrPDB Length = 927 Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 10/85 (11%) Query: 24 NYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSLPGV 83 N+ID+ HG E ++ P + +H ++ P + E + IIL Q+ ++ L G Sbjct: 650 NFIDRKHGREEISY--PDVQWQHESLKP-------VLEPTYGIILYQEQVMQIAQVLSGY 700 Query: 84 DVSAEEQLRKIDMLQKKLVEVEDEK 108 + + LR+ M +KK E+ ++ Sbjct: 701 TLGGADMLRRA-MGKKKPEEMAKQR 724 >1PT7-A nrPDB Length = 437 Score = 29.3 bits (64), Expect = 0.56, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 10/62 (16%) Query: 81 PGVDVSAEEQLRKI---DML-------QKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFV 130 PGV QLR I D L K+ +E+ + E + EKL+R D L+E+F Sbjct: 60 PGVGDVTRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGKEVMEKLIREADILVENFH 119 Query: 131 DG 132 G Sbjct: 120 PG 121 >2DHR-A nrPDB Length = 499 Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 34/52 (65%), Gaps = 4/52 (7%) Query: 80 LPGVDVS--AEEQLRKIDMLQKKLVEVEDEKIEA--IKKKEKLLRHVDSLIE 127 L G DV +EE ++ID ++L+E + ++++A ++K+E L R ++L+E Sbjct: 402 LGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLE 453 >3RFY-A nrPDB Length = 369 Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%) Query: 97 LQKKLVEVEDEKIEAIKKKEK-LLRHVDSLIEDFVDGI 133 +Q L VED K +A+ K+K +L++V + ED VDG Sbjct: 116 MQDMLKIVEDRKRDAVAPKQKEILKYVGGIEEDMVDGF 153 >5N0L-A nrPDB Length = 159 Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 13/73 (17%) Query: 62 LSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLR- 120 ++++++ KTR+INK + + G VS D+L L +V + + K K+L Sbjct: 4 MASEVLQKTRKINKTLQTSGGSSVS-------FDLLAGALGDVLSSNVYVVSAKGKVLGL 56 Query: 121 HVD-----SLIED 128 H++ S+IED Sbjct: 57 HLNDVQDSSVIED 69 >5YZ0-C nrPDB Length = 791 Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%) Query: 53 EEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAI 112 +E + + ++++K +I L DSL + EEQ R +L E EK +A+ Sbjct: 122 KELKEKMKVMEEEVLIKNGEIKILRDSLHQTESVLEEQRRSHFLL-------EQEKTQAL 174 Query: 113 KKKEK 117 KEK Sbjct: 175 SDKEK 179 >6D8G-A nrPDB Length = 886 Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 21/36 (58%) Query: 29 NHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELST 64 NHG + L ++ PQ+S++ AT+ E N E +T Sbjct: 191 NHGSDGLFISTPQVSEEQATLSIRGEVKNDAPEKAT 226 >5JD3-A nrPDB Length = 238 Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust. Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 3/23 (13%) Query: 40 PQMSDKHATVVPPEEFSNTIDEL 62 P M+D+H V PEE+ T+DEL Sbjct: 123 PLMTDRH---VCPEEYEKTLDEL 142 >2WXX-A nrPDB Length = 453 Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Query: 52 PEEFSNTIDELSTDIILKTRQINKLIDSLPG 82 P F ++D LSTD +L T +IN+ I ++ G Sbjct: 198 PALFPRSLD-LSTDPVLATEKINRFIKAVTG 227 >3EQ1-A nrPDB Length = 361 Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust. Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Query: 48 TVVPPEEFSNTI---DELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEV 104 TV+PP I + ++ + + K +++LP V LR+ LQ+K + Sbjct: 102 TVLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHL 161 Query: 105 EDEKIEA 111 E I+ Sbjct: 162 EFRSIQG 168 >1G3N-A nrPDB Length = 326 Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 6/55 (10%) Query: 37 VNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQL 91 V P+ + + P E+F IDEL D++LK N P +SA L Sbjct: 247 VALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFN------PAKRISAYSAL 295 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 5OQM-n nrPDB 192 4e-50 5U0P-U nrPDB 178 7e-46 Sequences not found previously or not previously below threshold: 4Y9J-A nrPDB 29 0.54 2C8J-A nrPDB 29 0.69 2P01-A nrPDB 29 1.1 3KFU-G nrPDB 28 1.3 5IJO-H nrPDB 27 2.9 4Z53-A nrPDB 27 3.0 5V8F-D nrPDB 27 3.8 4KPF-A nrPDB 27 4.2 5YZ0-C nrPDB 26 4.5 2XPD-A nrPDB 26 4.6 4RVO-A nrPDB 26 4.6 5UYS-A nrPDB 26 5.3 2FFC-A nrPDB 25 9.4 CONVERGED! >5OQM-n nrPDB Length = 140 Score = 192 bits (488), Expect = 4e-50, Method: Composition-based stats. Identities = 140/140 (100%), Positives = 140/140 (100%) Query: 1 MTDRLTQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTID 60 MTDRLTQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTID Sbjct: 1 MTDRLTQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTID 60 Query: 61 ELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLR 120 ELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLR Sbjct: 61 ELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLR 120 Query: 121 HVDSLIEDFVDGIANSKKST 140 HVDSLIEDFVDGIANSKKST Sbjct: 121 HVDSLIEDFVDGIANSKKST 140 >5U0P-U nrPDB Length = 138 Score = 178 bits (451), Expect = 7e-46, Method: Composition-based stats. Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 1/129 (0%) Query: 1 MTDRLTQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTID 60 M R TQLQ +D++ QF ++++Y+ +H F L E ++SD + EE Sbjct: 1 MACRCTQLQDTIDEVATQFYSSIHYLSSHHDFVPLPGQE-KVSDSKVNPISAEELQFAQR 59 Query: 61 ELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLR 120 +L+ D++ K QI+ LI+ LPG+ + + QL KI LQ + E + E+ + E L Sbjct: 60 DLAKDLVTKFMQIDTLINQLPGISTAPKHQLEKIKKLQNSIEEKQLERKSLESENEDLKL 119 Query: 121 HVDSLIEDF 129 + IE F Sbjct: 120 QLAKRIETF 128 >4Y9J-A nrPDB Length = 593 Score = 29.3 bits (64), Expect = 0.54, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 19/118 (16%) Query: 30 HGFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKT-------RQINKLIDSLPG 82 G+ T + D T + + T + LS D++ K ++ L G Sbjct: 424 QGYMEDTGLPTLLRDAQVTPI----WEGTTNVLSLDVLRVFSGKENILLAFGKRVEQLLG 479 Query: 83 VDVSAEEQLRK--------IDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVDG 132 + +E+L+K + LQK LV+ D I+ + + + RH+ I G Sbjct: 480 NTKTEDEKLKKSKEAVESALKQLQKLLVKASDSAIQGETRIDSVARHIAFTIARIYSG 537 >2C8J-A nrPDB Length = 311 Score = 28.9 bits (63), Expect = 0.69, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 10/75 (13%) Query: 61 ELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLR 120 E+ D+ + R I G+ A L + L+K+L EV+DE L+ Sbjct: 37 EMLEDLTERYRAIG-------GISPLATITLEQAKKLEKRLNEVQDE---VEYHMYLGLK 86 Query: 121 HVDSLIEDFVDGIAN 135 H++ IED V + N Sbjct: 87 HIEPFIEDAVKEMHN 101 >2P01-A nrPDB Length = 323 Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 13/125 (10%) Query: 12 LDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDEL----STDII 67 LD++ +F L++ +K H + L + + H V+ P + S+ + T++ Sbjct: 135 LDKLWREF---LHHKEKVHEYNVLLETLSRTEEIHENVISPSDLSDIKGSVLHSRHTELK 191 Query: 68 LKTRQINKLIDSL-----PGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHV 122 K R IN+ +D L G AE + ++ L E +E+L H Sbjct: 192 EKLRSINQGLDRLRRVSHQGYSTEAEFEEPRVIDLWDLAQSANLTDKELEAFREELK-HF 250 Query: 123 DSLIE 127 ++ IE Sbjct: 251 EAKIE 255 >3KFU-G nrPDB Length = 92 Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 10/54 (18%) Query: 80 LPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVDGI 133 +PG+++S E LRK++ L KI ++E LL I DFVD + Sbjct: 1 MPGMELSPE-LLRKLETLA---------KIRLSPEEEALLLQDLKRILDFVDAL 44 >5IJO-H nrPDB Length = 522 Score = 27.0 bits (58), Expect = 2.9, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 40/79 (50%), Gaps = 5/79 (6%) Query: 54 EFSNTIDELSTDIILKTRQIN----KLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKI 109 ++S +++ + + Q+N LI++ + S ++ K+ + QK+L + D + Sbjct: 339 KWSLELEDQERHFLQQATQVNAWDRTLIENGEKI-TSLHREVEKVKLDQKRLDQELDFIL 397 Query: 110 EAIKKKEKLLRHVDSLIED 128 K+ E LL ++ L+++ Sbjct: 398 SQQKELEDLLSPLEELVKE 416 >4Z53-A nrPDB Length = 742 Score = 27.0 bits (58), Expect = 3.0, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 23/122 (18%) Query: 42 MSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSLPGVD------VSAEEQLRK-- 93 +S +AT +PP + ID I T +I+KL++ LPG D + ++++K Sbjct: 416 ISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAY 475 Query: 94 --------------IDMLQKKLVEVEDEKIEAIKKKEKLLRHVDS-LIEDFVDGIANSKK 138 I+ L+ ++ +I K L++ +D + + V GIA + Sbjct: 476 ETGKGRVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRD 535 Query: 139 ST 140 + Sbjct: 536 ES 537 >5V8F-D nrPDB Length = 529 Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 15/130 (11%) Query: 6 TQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTD 65 T LQ C ++ ++ + + + T + E S Sbjct: 73 TYLQDCQQEIDRIIKQSIIQKESHSVILVGPRQSYK------TYLLDYELSLLQQSYKEQ 126 Query: 66 IILKTRQINKLIDS----LPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKK---EKL 118 I ++N I S + G+ E+QL+KI ++K+ + E I + EK+ Sbjct: 127 FIT--IRLNGFIHSEQTAINGIATQLEQQLQKIHGSEEKIDDTSLETISSGSLTEVFEKI 184 Query: 119 LRHVDSLIED 128 L +DS + Sbjct: 185 LLLLDSTTKT 194 >4KPF-A nrPDB Length = 496 Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 23/122 (18%) Query: 42 MSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSLPGVD------VSAEEQLRK-- 93 +S +AT +PP + ID I T +I+KL++ LPG D + ++++K Sbjct: 170 ISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAY 229 Query: 94 --------------IDMLQKKLVEVEDEKIEAIKKKEKLLRHVDS-LIEDFVDGIANSKK 138 I+ L+ ++ +I K L++ +D + + V GIA + Sbjct: 230 ETGKGRVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRD 289 Query: 139 ST 140 + Sbjct: 290 ES 291 >5YZ0-C nrPDB Length = 791 Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 15/136 (11%) Query: 2 TDRLTQLQICLDQMTEQFCATLNYIDKNHGFERL---TVNEPQMSDKHATVVPP------ 52 D L +L Q Q A + +H RL P ++ + Sbjct: 57 ADDLEELDTLASQALSQCPAAARDVSSDHKVHRLLDGMSKNPSGKNRETVPIKDNFELEV 116 Query: 53 -----EEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDML-QKKLVEVED 106 +E + + ++++K +I L DSL + EEQ R +L Q+K + D Sbjct: 117 LQAQYKELKEKMKVMEEEVLIKNGEIKILRDSLHQTESVLEEQRRSHFLLEQEKTQALSD 176 Query: 107 EKIEAIKKKEKLLRHV 122 ++ E KK + L + Sbjct: 177 KEKEFSKKLQSLQSEL 192 >2XPD-A nrPDB Length = 200 Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 7/71 (9%) Query: 33 ERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSA-EEQL 91 + PQ+ DK ++F+ +LS + K+++ P +D + Sbjct: 45 VSVAGKLPQIGDK------AKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASV 98 Query: 92 RKIDMLQKKLV 102 RK + L +L Sbjct: 99 RKFNQLAGELE 109 >4RVO-A nrPDB Length = 436 Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 71 RQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVE------DEKIEAIKKKEKLLRHVDS 124 Q+ K++ P + + L ++ + +VEVE D IE K + ++R + Sbjct: 344 MQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELSDLSTDNYIELEKIRRDIIRQLKD 403 Query: 125 LI 126 I Sbjct: 404 EI 405 >5UYS-A nrPDB Length = 494 Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 74 NKLIDSLPGVDVSAEEQLRKID---MLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIE 127 + L+D +P + + + L K+ ++ L+ E + + + + +D+L++ Sbjct: 194 DSLVDLVPWLKIFPNKTLEKLKSHVKIRNDLLNKILENYKEKFRSDSITNMLDTLMQ 250 >2FFC-A nrPDB Length = 353 Score = 25.5 bits (54), Expect = 9.4, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%) Query: 10 ICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDEL 62 ICLD+ +++ +T + + + N + K A VV EE +L Sbjct: 207 ICLDEECKRYYSTFVLVKTTNADSHIFQNRLSLDGKEAYVVIAEEVQKMAKQL 259 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.310 0.130 0.320 Lambda K H 0.267 0.0396 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,429,968 Number of Sequences: 36641 Number of extensions: 147700 Number of successful extensions: 634 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 43 Number of HSP's that attempted gapping in prelim test: 598 Number of HSP's gapped (non-prelim): 76 length of query: 140 length of database: 10,336,785 effective HSP length: 87 effective length of query: 53 effective length of database: 7,149,018 effective search space: 378897954 effective search space used: 378897954 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 54 (25.5 bits)