BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P47093 (109 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 6ASO-H nrPDB 221 7e-59 4M7D-A nrPDB 183 2e-47 6AH0-z nrPDB 53 2e-08 4M75-A nrPDB 31 0.098 4C8Q-A nrPDB 30 0.26 5LQW-b nrPDB 29 0.47 1YM0-A nrPDB 27 1.5 6IFV-A nrPDB 27 1.9 6IFX-A nrPDB 27 2.1 6QX9-1b nrPDB 27 2.8 1I8F-A nrPDB 26 3.4 6BK5-A nrPDB 25 6.3 5MRF-Q nrPDB 25 6.6 3SP1-A nrPDB 25 7.0 5HB2-C nrPDB 25 9.9 >6ASO-H nrPDB Length = 115 Score = 221 bits (562), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 109/109 (100%), Positives = 109/109 (100%) Query: 1 MSATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRISKEFICKAQLLRGSE 60 MSATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRISKEFICKAQLLRGSE Sbjct: 1 MSATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRISKEFICKAQLLRGSE 60 Query: 61 IALVGLIDAENDDSLAPIDEKKVPMLKDTKNKIENEHVIWEKVYESKTK 109 IALVGLIDAENDDSLAPIDEKKVPMLKDTKNKIENEHVIWEKVYESKTK Sbjct: 61 IALVGLIDAENDDSLAPIDEKKVPMLKDTKNKIENEHVIWEKVYESKTK 109 >4M7D-A nrPDB Length = 96 Score = 183 bits (464), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 92/96 (95%), Positives = 93/96 (96%) Query: 1 MSATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRISKEFICKAQLLRGSE 60 MSATLKDYLNKRVVII VDGE LIASLNGFDKNTNLF+TNVFNRISKEFI KAQLLRGSE Sbjct: 1 MSATLKDYLNKRVVIILVDGESLIASLNGFDKNTNLFLTNVFNRISKEFISKAQLLRGSE 60 Query: 61 IALVGLIDAENDDSLAPIDEKKVPMLKDTKNKIENE 96 IALVGLIDAENDDSLAPIDEKKVPMLKDTKNKIENE Sbjct: 61 IALVGLIDAENDDSLAPIDEKKVPMLKDTKNKIENE 96 >6AH0-z nrPDB Length = 96 Score = 53.1 bits (126), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 6/81 (7%) Query: 1 MSATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRI------SKEFICKAQ 54 M++ L++Y+N+ V +I DG ++ +L GFD+ NL + R+ ++ + Sbjct: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60 Query: 55 LLRGSEIALVGLIDAENDDSL 75 ++RG +A++G ID E D +L Sbjct: 61 IVRGDNVAVIGEIDEETDSAL 81 >4M75-A nrPDB Length = 144 Score = 31.2 bits (69), Expect = 0.098, Method: Compositional matrix adjust. Identities = 20/92 (21%), Positives = 47/92 (51%), Gaps = 10/92 (10%) Query: 2 SATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRI--SKEFICKAQ----- 54 +A + +++++ ++ DG L L FD+ NL + + RI S+E + Sbjct: 15 TAAIVSSVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIF 74 Query: 55 LLRGSEIALVGLIDAENDDSLAPIDE-KKVPM 85 ++RG + ++G +D + +D P++ +++P Sbjct: 75 MIRGENVVMLGEVDIDKEDQ--PLEAMERIPF 104 >4C8Q-A nrPDB Length = 101 Score = 30.0 bits (66), Expect = 0.26, Method: Compositional matrix adjust. Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 7/73 (9%) Query: 9 LNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRI--SKEFICKAQ-----LLRGSEI 61 +++++ ++ DG L L FD+ NL + + RI S+E + ++RG + Sbjct: 6 VDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGENV 65 Query: 62 ALVGLIDAENDDS 74 ++G +D + +D Sbjct: 66 VMLGEVDIDKEDQ 78 >5LQW-b nrPDB Length = 196 Score = 28.9 bits (63), Expect = 0.47, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%) Query: 2 SATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRISKEFICKAQL 55 S+ L + ++ ++ ++ DG I L FDK+ NL V N +E + K QL Sbjct: 9 SSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNL----VLNECIEERVPKTQL 58 >1YM0-A nrPDB Length = 238 Score = 27.3 bits (59), Expect = 1.5, Method: Compositional matrix adjust. Identities = 11/30 (36%), Positives = 17/30 (56%) Query: 47 KEFICKAQLLRGSEIALVGLIDAENDDSLA 76 + +C A ++G ALV L+ E+D S A Sbjct: 36 RWVVCAAHCMQGEAPALVSLVVGEHDSSAA 65 >6IFV-A nrPDB Length = 215 Score = 26.9 bits (58), Expect = 1.9, Method: Compositional matrix adjust. Identities = 13/32 (40%), Positives = 21/32 (65%) Query: 78 IDEKKVPMLKDTKNKIENEHVIWEKVYESKTK 109 ID++ +P+LKDT + EN VI + V ++ K Sbjct: 78 IDQRLLPILKDTLSPYENVTVIHQDVLKADVK 109 >6IFX-A nrPDB Length = 287 Score = 26.9 bits (58), Expect = 2.1, Method: Compositional matrix adjust. Identities = 13/32 (40%), Positives = 21/32 (65%) Query: 78 IDEKKVPMLKDTKNKIENEHVIWEKVYESKTK 109 ID++ +P+LKDT + EN VI + V ++ K Sbjct: 78 IDQRLLPILKDTLSPYENVTVIHQDVLKADVK 109 >6QX9-1b nrPDB Length = 240 Score = 26.6 bits (57), Expect = 2.8, Method: Compositional matrix adjust. Identities = 11/39 (28%), Positives = 21/39 (53%) Query: 2 SATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITN 40 S+ + +++ R+ I DG I + FDK+ NL + + Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCD 44 >1I8F-A nrPDB Length = 81 Score = 26.2 bits (56), Expect = 3.4, Method: Compositional matrix adjust. Identities = 12/38 (31%), Positives = 22/38 (57%) Query: 1 MSATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFI 38 + ATL+D + K+V++ D + L FD++ NL + Sbjct: 12 LGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLL 49 >6BK5-A nrPDB Length = 349 Score = 25.4 bits (54), Expect = 6.3, Method: Composition-based stats. Identities = 10/23 (43%), Positives = 14/23 (60%) Query: 78 IDEKKVPMLKDTKNKIENEHVIW 100 + EK+ P L+ T + EN HV W Sbjct: 197 LSEKEGPALQHTMDITENNHVSW 219 >5MRF-Q nrPDB Length = 296 Score = 25.4 bits (54), Expect = 6.6, Method: Compositional matrix adjust. Identities = 12/27 (44%), Positives = 16/27 (59%) Query: 12 RVVIIKVDGECLIASLNGFDKNTNLFI 38 RVV++ + IA + FDK TN FI Sbjct: 67 RVVVMSGASKGNIAVIKSFDKRTNSFI 93 >3SP1-A nrPDB Length = 501 Score = 25.0 bits (53), Expect = 7.0, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 19/91 (20%) Query: 8 YLNKRVVIIKVDGECLIASLNGFDKNTNLFIT------NVFNRISKEFIC-----KAQL- 55 +LNK+ + V GE LI N K+ FIT F+ + ++C + QL Sbjct: 278 FLNKKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLK 337 Query: 56 -----LRGSEIALVGLID--AENDDSLAPID 79 L+ S+IA LI+ + +SL P+D Sbjct: 338 FSLDNLQASKIARENLINKLSYFYESLDPVD 368 >5HB2-C nrPDB Length = 723 Score = 24.6 bits (52), Expect = 9.9, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Query: 74 SLAPIDEKKVPMLKDTKNKIENEHVIWEKVYE 105 SLA ID+ V + K E +H+ W+K+ E Sbjct: 558 SLAAIDDP-VELAKAMMGMYERDHMFWQKIRE 588 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 6ASO-H nrPDB 182 3e-47 4M7D-A nrPDB 145 3e-36 6AH0-z nrPDB 104 1e-23 Sequences not found previously or not previously below threshold: 4M75-A nrPDB 49 5e-07 4C8Q-A nrPDB 45 5e-06 6QX9-1b nrPDB 40 3e-04 3SWN-C nrPDB 39 6e-04 1I8F-A nrPDB 38 0.001 6ASO-C nrPDB 36 0.005 5LQW-b nrPDB 35 0.008 6AH0-d nrPDB 34 0.016 3JB9-J nrPDB 33 0.020 1JBM-A nrPDB 32 0.082 6ASO-G nrPDB 32 0.090 4XQ3-A nrPDB 31 0.10 3JB9-E nrPDB 31 0.13 6QX9-67 nrPDB 31 0.15 1LJO-A nrPDB 29 0.38 5MKL-A1 nrPDB 29 0.50 1TH7-A nrPDB 28 1.2 6QW6-4e nrPDB 28 1.4 4M77-E nrPDB 27 1.7 6QDV-e nrPDB 27 2.0 3PGG-A nrPDB 27 2.2 6AH0-t nrPDB 27 2.5 6IFV-A nrPDB 27 2.7 5N9J-E nrPDB 27 2.8 6IFX-A nrPDB 27 2.9 4YWO-A nrPDB 26 3.4 3JCR-3 nrPDB 26 3.9 3HJB-A nrPDB 25 5.3 6BK5-A nrPDB 25 5.6 1O8B-A nrPDB 25 7.9 5G5T-A nrPDB 25 9.7 >6ASO-H nrPDB Length = 115 Score = 182 bits (462), Expect = 3e-47, Method: Composition-based stats. Identities = 109/109 (100%), Positives = 109/109 (100%) Query: 1 MSATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRISKEFICKAQLLRGSE 60 MSATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRISKEFICKAQLLRGSE Sbjct: 1 MSATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRISKEFICKAQLLRGSE 60 Query: 61 IALVGLIDAENDDSLAPIDEKKVPMLKDTKNKIENEHVIWEKVYESKTK 109 IALVGLIDAENDDSLAPIDEKKVPMLKDTKNKIENEHVIWEKVYESKTK Sbjct: 61 IALVGLIDAENDDSLAPIDEKKVPMLKDTKNKIENEHVIWEKVYESKTK 109 >4M7D-A nrPDB Length = 96 Score = 145 bits (367), Expect = 3e-36, Method: Composition-based stats. Identities = 92/96 (95%), Positives = 93/96 (96%) Query: 1 MSATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRISKEFICKAQLLRGSE 60 MSATLKDYLNKRVVII VDGE LIASLNGFDKNTNLF+TNVFNRISKEFI KAQLLRGSE Sbjct: 1 MSATLKDYLNKRVVIILVDGESLIASLNGFDKNTNLFLTNVFNRISKEFISKAQLLRGSE 60 Query: 61 IALVGLIDAENDDSLAPIDEKKVPMLKDTKNKIENE 96 IALVGLIDAENDDSLAPIDEKKVPMLKDTKNKIENE Sbjct: 61 IALVGLIDAENDDSLAPIDEKKVPMLKDTKNKIENE 96 >6AH0-z nrPDB Length = 96 Score = 104 bits (259), Expect = 1e-23, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 6/81 (7%) Query: 1 MSATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRI------SKEFICKAQ 54 M++ L++Y+N+ V +I DG ++ +L GFD+ NL + R+ ++ + Sbjct: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60 Query: 55 LLRGSEIALVGLIDAENDDSL 75 ++RG +A++G ID E D +L Sbjct: 61 IVRGDNVAVIGEIDEETDSAL 81 >4M75-A nrPDB Length = 144 Score = 48.9 bits (115), Expect = 5e-07, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 7/79 (8%) Query: 2 SATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRI-------SKEFICKAQ 54 +A + +++++ ++ DG L L FD+ NL + + RI E Sbjct: 15 TAAIVSSVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIF 74 Query: 55 LLRGSEIALVGLIDAENDD 73 ++RG + ++G +D + +D Sbjct: 75 MIRGENVVMLGEVDIDKED 93 >4C8Q-A nrPDB Length = 101 Score = 45.4 bits (106), Expect = 5e-06, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 7/72 (9%) Query: 9 LNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRI-------SKEFICKAQLLRGSEI 61 +++++ ++ DG L L FD+ NL + + RI E ++RG + Sbjct: 6 VDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGENV 65 Query: 62 ALVGLIDAENDD 73 ++G +D + +D Sbjct: 66 VMLGEVDIDKED 77 >6QX9-1b nrPDB Length = 240 Score = 39.6 bits (91), Expect = 3e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 12/72 (16%) Query: 2 SATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNV--FNRI----------SKEF 49 S+ + +++ R+ I DG I + FDK+ NL + + F +I ++ Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65 Query: 50 ICKAQLLRGSEI 61 + LLRG + Sbjct: 66 VLGLVLLRGENL 77 >3SWN-C nrPDB Length = 117 Score = 38.8 bits (89), Expect = 6e-04, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 9/77 (11%) Query: 5 LKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRISKE---------FICKAQL 55 L Y ++R+ G + L GFD+ NL + +V ++ + Sbjct: 32 LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVV 91 Query: 56 LRGSEIALVGLIDAEND 72 +RG+ + L+ +D + Sbjct: 92 VRGTTLVLIAPMDGSEE 108 >1I8F-A nrPDB Length = 81 Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 1 MSATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRISKEFIC-KAQLLRGS 59 + ATL+D + K+V++ D + L FD++ NL + + I ++RG Sbjct: 12 LGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDGNVYKRGTMVVRGE 71 Query: 60 EIALVGLI 67 + + + Sbjct: 72 NVLFISPV 79 >6ASO-C nrPDB Length = 97 Score = 35.8 bits (81), Expect = 0.005, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 9/80 (11%) Query: 5 LKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRISK---------EFICKAQL 55 LK L++RV I L+ +L FD + N+ +++ I + E C+ Sbjct: 8 LKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVF 67 Query: 56 LRGSEIALVGLIDAENDDSL 75 +RG + L+ ++D ++ Sbjct: 68 IRGDTVTLISTPSEDDDGAV 87 >5LQW-b nrPDB Length = 196 Score = 35.0 bits (79), Expect = 0.008, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 2 SATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITN-VFNRISKEFICKAQ 54 S+ L + ++ ++ ++ DG I L FDK+ NL + + R+ K + K + Sbjct: 9 SSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLR 62 >6AH0-d nrPDB Length = 76 Score = 33.8 bits (76), Expect = 0.016, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 5 LKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRIS--KEFICKAQLLRGSEIA 62 LK +++K++ + G + L GFD NL I + ++ ++RG+ I Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSII 68 Query: 63 LV 64 ++ Sbjct: 69 ML 70 >3JB9-J nrPDB Length = 77 Score = 33.5 bits (75), Expect = 0.020, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 5 LKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRIS--KEFICKAQLLRGSEIA 62 LK YL+++V + + L G+D N+ + + ++ + +RG+ + Sbjct: 9 LKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSVAIRGNSVI 68 Query: 63 LVGLIDAEN 71 ++ +D Sbjct: 69 MIETLDKMT 77 >1JBM-A nrPDB Length = 86 Score = 31.5 bits (70), Expect = 0.082, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 2/63 (3%) Query: 4 TLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRISKEFI--CKAQLLRGSEI 61 L + LN V+I L FD + NL + + E L+RG I Sbjct: 17 ALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNI 76 Query: 62 ALV 64 + Sbjct: 77 VYI 79 >6ASO-G nrPDB Length = 115 Score = 31.5 bits (70), Expect = 0.090, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 22/42 (52%) Query: 5 LKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRIS 46 L Y + ++ + + G+ +I L G+D+ NL + + +S Sbjct: 30 LAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMS 71 >4XQ3-A nrPDB Length = 91 Score = 31.1 bits (69), Expect = 0.10, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Query: 4 TLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFI---TNVFNRISKEFI-CKAQLLRGS 59 +L+ +N+ V++ DG I L D NL + T + S+ L+RGS Sbjct: 15 SLRTAINRIVLVKLKDGSEYIGKLEQTDGTMNLVLRDCTEIREGTSEPVAKYGRVLIRGS 74 Query: 60 EIALVGLIDAEN 71 I + +D E Sbjct: 75 NILFIS-VDYET 85 >3JB9-E nrPDB Length = 147 Score = 30.8 bits (68), Expect = 0.13, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 13/73 (17%) Query: 2 SATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNV--FNRISKEFI--------- 50 + + LN + + DG + L FD NL +++ + I K+ + Sbjct: 3 TTKMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEK 62 Query: 51 --CKAQLLRGSEI 61 +LRG I Sbjct: 63 RMLGLVILRGEFI 75 >6QX9-67 nrPDB Length = 103 Score = 30.8 bits (68), Expect = 0.15, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 10/70 (14%) Query: 5 LKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFN---------RISKEF-ICKAQ 54 L Y++K + + G L GFD NL + +++++ Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLV 74 Query: 55 LLRGSEIALV 64 + RG+ + L+ Sbjct: 75 VCRGTSVVLI 84 >1LJO-A nrPDB Length = 77 Score = 29.2 bits (64), Expect = 0.38, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Query: 23 LIASLNGFDKNTNLFITNVFNRISKEFI--CKAQLLRGSEIALV 64 L+ L G D NL++TN +E + +LRG+ + L+ Sbjct: 29 LVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRGNNVVLI 72 >5MKL-A1 nrPDB Length = 87 Score = 28.8 bits (63), Expect = 0.50, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Query: 4 TLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFI---TNVFNRISKEFI-CKAQLLRGS 59 +LK LNK V++ +GE + L D NL + T S L+RGS Sbjct: 11 SLKTALNKIVLVKLKNGEEYVGRLEQSDGTMNLVLKDCTEYREGTSDPVAKYGRVLIRGS 70 Query: 60 EIALVGLIDAEN 71 I + ID E+ Sbjct: 71 NILFIS-IDYES 81 >1TH7-A nrPDB Length = 81 Score = 27.7 bits (60), Expect = 1.2, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 5 LKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRISKEF--ICKAQLLRGSEIA 62 L + LN V++ + + L +D++ NL +++ S ++RG + Sbjct: 14 LAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVI 73 Query: 63 LV 64 L+ Sbjct: 74 LI 75 >6QW6-4e nrPDB Length = 92 Score = 27.7 bits (60), Expect = 1.4, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 3/45 (6%) Query: 23 LIASLNGFDKNTNLFIT---NVFNRISKEFICKAQLLRGSEIALV 64 + + GFD+ NL + + ++ +L+G I L+ Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLL 87 >4M77-E nrPDB Length = 93 Score = 27.3 bits (59), Expect = 1.7, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 17/35 (48%) Query: 9 LNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFN 43 +N++V+I+ +L GFD N+ + + Sbjct: 16 INQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVE 50 >6QDV-e nrPDB Length = 81 Score = 26.9 bits (58), Expect = 2.0, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 3/45 (6%) Query: 23 LIASLNGFDKNTNLFIT---NVFNRISKEFICKAQLLRGSEIALV 64 + + GFD+ NL + + ++ +L+G I L+ Sbjct: 33 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLL 77 >3PGG-A nrPDB Length = 121 Score = 26.9 bits (58), Expect = 2.2, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Query: 10 NKRVVIIKVDGECLIASLNGFDKNTNLFITNVFN 43 N+ V++K D E L GFD+ N+ + +V Sbjct: 39 NRIYVVMKGDKE-FSGVLRGFDEYVNMVLDDVQE 71 >6AH0-t nrPDB Length = 91 Score = 26.5 bits (57), Expect = 2.5, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 18/35 (51%) Query: 9 LNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFN 43 + R+ I+ + ++ +L GFD N+ + +V Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56 >6IFV-A nrPDB Length = 215 Score = 26.5 bits (57), Expect = 2.7, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 21/32 (65%) Query: 78 IDEKKVPMLKDTKNKIENEHVIWEKVYESKTK 109 ID++ +P+LKDT + EN VI + V ++ K Sbjct: 78 IDQRLLPILKDTLSPYENVTVIHQDVLKADVK 109 >5N9J-E nrPDB Length = 376 Score = 26.5 bits (57), Expect = 2.8, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Query: 30 FDKNTNLFITNVFNRI----SKEFICKAQLLRGSEIALVGLIDAENDDSLAPIDEKKVPM 85 +D +N + F R+ I ++L + + D E+D ++ ++EK P Sbjct: 114 YDPKSNAIVGTSFTRVHDYDKNSPIENEKILEDDQHTAMKEKDNESDKTMKDVEEKTEPS 173 Query: 86 LKDTKNKIE 94 LK + I+ Sbjct: 174 LKKEEEDIQ 182 >6IFX-A nrPDB Length = 287 Score = 26.5 bits (57), Expect = 2.9, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 21/32 (65%) Query: 78 IDEKKVPMLKDTKNKIENEHVIWEKVYESKTK 109 ID++ +P+LKDT + EN VI + V ++ K Sbjct: 78 IDQRLLPILKDTLSPYENVTVIHQDVLKADVK 109 >4YWO-A nrPDB Length = 462 Score = 26.1 bits (56), Expect = 3.4, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 38 ITNVFNRISKEFICKAQLLRGSEIALVGLIDAENDDSLAPIDEKKVPMLKDTKNKIENEH 97 +T R+ + + + + +A VGL +AE ++ + +PM K +I N Sbjct: 329 LTGSHKRVDENAVPQV-IFTQPNLARVGLTEAEARAKEGEVEARVLPMSSVAKAEIINSR 387 Query: 98 V 98 + Sbjct: 388 L 388 >3JCR-3 nrPDB Length = 102 Score = 26.1 bits (56), Expect = 3.9, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 32/78 (41%), Gaps = 17/78 (21%) Query: 9 LNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRISKEFICKAQLLRGSEIALVGLID 68 L++R+ + + L L+ +D++ N+ + +V ++ ID Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTI-----------------EID 67 Query: 69 AENDDSLAPIDEKKVPML 86 E + + ++ +PML Sbjct: 68 EETYEEIYKSTKRNIPML 85 >3HJB-A nrPDB Length = 574 Score = 25.4 bits (54), Expect = 5.3, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Query: 1 MSATLKDYLNKRVV--IIKVDGECLIASLNGFDKNTNLFITNVFNRISKEFICKAQLLR 57 ++ L Y N V + VDG + +L D T LF+ ++E + A R Sbjct: 190 VTEALVPYKNHLTVHFVSNVDGTHMAETLKNVDPETTLFLVASKTFTTQETMTNAHTAR 248 >6BK5-A nrPDB Length = 349 Score = 25.4 bits (54), Expect = 5.6, Method: Composition-based stats. Identities = 10/23 (43%), Positives = 14/23 (60%) Query: 78 IDEKKVPMLKDTKNKIENEHVIW 100 + EK+ P L+ T + EN HV W Sbjct: 197 LSEKEGPALQHTMDITENNHVSW 219 >1O8B-A nrPDB Length = 219 Score = 25.0 bits (53), Expect = 7.9, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 16 IKVDGECLIASLNGFDKNTNLFITNVFNRISKEFICKAQLLRGSEIALVGLID 68 + D +I ++G + + + N N I RG+++AL+G D Sbjct: 160 VVTDNGNVILDVHGMEILDPIAMENAINAIPGVVTVGLFANRGADVALIGTPD 212 >5G5T-A nrPDB Length = 713 Score = 24.6 bits (52), Expect = 9.7, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Query: 33 NTNLFITNVFNRISKEFICK--AQLLRGSEIALVGLIDAENDDSLAPIDEKKVPMLKDTK 90 +TN T ++N+ +K ++ +++R + LID E D L I +K M ++ Sbjct: 326 STNTLFTWIYNQNAKIYLPYDVPEIIRNKNLLTYILIDEEIKDELKAIKDKVNKMFRNY- 384 Query: 91 NKIENE 96 NKI N+ Sbjct: 385 NKIANK 390 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.316 0.138 0.368 Lambda K H 0.267 0.0424 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,153,451 Number of Sequences: 36641 Number of extensions: 147398 Number of successful extensions: 510 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 24 Number of HSP's that attempted gapping in prelim test: 462 Number of HSP's gapped (non-prelim): 67 length of query: 109 length of database: 10,336,785 effective HSP length: 75 effective length of query: 34 effective length of database: 7,588,710 effective search space: 258016140 effective search space used: 258016140 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (25.0 bits)