BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P45478 (306 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 1EXW-A nrPDB 585 e-168 3GRO-A nrPDB 568 e-162 1PJA-A nrPDB 84 7e-17 4LJY-A nrPDB 30 1.6 1TL6-A nrPDB 29 2.2 4BOG-3 nrPDB 29 3.1 3KYF-A nrPDB 27 8.7 >1EXW-A nrPDB Length = 279 Score = 585 bits (1507), Expect = e-168, Method: Compositional matrix adjust. Identities = 279/279 (100%), Positives = 279/279 (100%) Query: 28 DPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLN 87 DPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLN Sbjct: 1 DPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLN 60 Query: 88 VNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVF 147 VNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVF Sbjct: 61 VNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVF 120 Query: 148 GLPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIREDIYRNHSIFLADINQ 207 GLPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIREDIYRNHSIFLADINQ Sbjct: 121 GLPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIREDIYRNHSIFLADINQ 180 Query: 208 ERGVNESYKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQD 267 ERGVNESYKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQD Sbjct: 181 ERGVNESYKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQD 240 Query: 268 RLGLKAMDKAGQLVFLALEGDHLQLSEEWFYAHIIPFLE 306 RLGLKAMDKAGQLVFLALEGDHLQLSEEWFYAHIIPFLE Sbjct: 241 RLGLKAMDKAGQLVFLALEGDHLQLSEEWFYAHIIPFLE 279 >3GRO-A nrPDB Length = 298 Score = 568 bits (1463), Expect = e-162, Method: Compositional matrix adjust. Identities = 266/283 (93%), Positives = 276/283 (97%) Query: 23 ALGHLDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVEN 82 AL HLDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGI+VLSLEIGKTL EDVEN Sbjct: 3 ALQHLDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGKTLMEDVEN 62 Query: 83 SFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQ 142 SFFLNVNSQVTTVCQ LAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPM+NLISVGGQ Sbjct: 63 SFFLNVNSQVTTVCQALAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMINLISVGGQ 122 Query: 143 HQGVFGLPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIREDIYRNHSIFL 202 HQGVFGLPRCPGESSHICDFIRKTLNAGAY+K +QERLVQAEYWHDPI+ED+YRNHSIFL Sbjct: 123 HQGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQERLVQAEYWHDPIKEDVYRNHSIFL 182 Query: 203 ADINQERGVNESYKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQEST 262 ADINQERG+NESYKKNLMALKKFVMVKFLND+IVDPVDSEWFGFYRSGQAKETIPLQE++ Sbjct: 183 ADINQERGINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKETIPLQETS 242 Query: 263 LYTQDRLGLKAMDKAGQLVFLALEGDHLQLSEEWFYAHIIPFL 305 LYTQDRLGLK MD AGQLVFLA EGDHLQLSEEWFYAHIIPFL Sbjct: 243 LYTQDRLGLKEMDNAGQLVFLATEGDHLQLSEEWFYAHIIPFL 285 >1PJA-A nrPDB Length = 302 Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 69/260 (26%), Positives = 119/260 (45%), Gaps = 23/260 (8%) Query: 34 PLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQVT 93 P+++ HG+ DS S + + + + PG V L++ RE + + V Sbjct: 38 PVIVVHGLFDSS---YSFRHLLEYINETHPGTVVTVLDLFDG-RESLR-PLWEQVQGFRE 92 Query: 94 TVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVFGLPRCP 153 V I+AK P QG + + +SQGG RA+ + + IS+ G +G Sbjct: 93 AVVPIMAKAP---QGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYG----- 144 Query: 154 GESSHICDFIRKTLNAGAYNKAIQ---ERLVQAEYWHDPIREDIYRNHSIFLADINQERG 210 ++ ++ ++ + Y + YWHDP +D+Y N S FLA IN ER Sbjct: 145 -DTDYLKWLFPTSMRSNLYRICYSPWGQEFSICNYWHDPHHDDLYLNASSFLALINGERD 203 Query: 211 VNES--YKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETI-PLQESTLYTQD 267 + ++KN + + V++ +D ++ P S +FGFY A ET+ ++E +Y +D Sbjct: 204 HPNATVWRKNFLRVGHLVLIGGPDDGVITPWQSSFFGFY---DANETVLEMEEQLVYLRD 260 Query: 268 RLGLKAMDKAGQLVFLALEG 287 GLK + G +V + G Sbjct: 261 SFGLKTLLARGAIVRCPMAG 280 >4LJY-A nrPDB Length = 493 Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 14/64 (21%) Query: 156 SSHICDFI-RKTLNAGAYNKAI------QERLVQAEYWHDPIREDIYRNHSIFLADINQE 208 S +ICDFI +K LNAG AI QERL+ E + RE +SI L Sbjct: 329 SQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFK---RE----KNSILLCTEVLS 381 Query: 209 RGVN 212 RG+N Sbjct: 382 RGLN 385 >1TL6-A nrPDB Length = 90 Score = 29.3 bits (64), Expect = 2.2, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 191 REDIYRNHSIFLADINQERGVNESYKKNLMALKKFV--MVKFLNDTIVDPVDSEWFGFYR 248 REDI N + F+A +N+ +E K N + +K V + + T++D + + G YR Sbjct: 23 REDIVENRANFIAFLNEIGVTHEGRKLNQNSFRKIVSELTQEDKKTLIDEFNEGFEGVYR 82 >4BOG-3 nrPDB Length = 505 Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust. Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Query: 1 MASSSCLWLLALAFLLGSCASLALGHLD--PPAPLP 34 + +C W+ L F LG+ A GHL+ P P P Sbjct: 462 VIDKACFWIALLLFSLGTLAIFLTGHLNQVPEFPFP 497 >3KYF-A nrPDB Length = 231 Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust. Identities = 14/35 (40%), Positives = 19/35 (54%) Query: 257 PLQESTLYTQDRLGLKAMDKAGQLVFLALEGDHLQ 291 PL + Y Q R +A K QLV + L+G HL+ Sbjct: 105 PLPQEVTYHQRRNAFRAALKLSQLVDIILDGAHLK 139 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 3GRO-A nrPDB 516 e-147 1EXW-A nrPDB 511 e-145 1PJA-A nrPDB 356 6e-99 Sequences not found previously or not previously below threshold: 6CL4-A nrPDB 34 0.069 4GW3-A nrPDB 32 0.23 4EQ4-A nrPDB 32 0.44 5ZWM-4 nrPDB 32 0.45 2IPI-A nrPDB 31 0.54 6CC4-A nrPDB 30 1.3 6B4I-E nrPDB 30 1.7 3FMO-B nrPDB 30 1.7 2QBY-A nrPDB 30 1.9 4BOG-3 nrPDB 29 2.3 4V8P-BF nrPDB 29 2.6 3LMC-A nrPDB 29 2.6 3FBY-A nrPDB 29 2.8 1YO7-A nrPDB 29 3.1 1CSN-A nrPDB 28 3.9 4ZWN-A nrPDB 28 4.2 1B85-A nrPDB 28 4.3 4A27-A nrPDB 28 6.9 3OKY-A nrPDB 27 7.5 3S61-A nrPDB 27 7.9 5FI5-A nrPDB 27 8.7 CONVERGED! >3GRO-A nrPDB Length = 298 Score = 516 bits (1328), Expect = e-147, Method: Composition-based stats. Identities = 266/283 (93%), Positives = 276/283 (97%) Query: 23 ALGHLDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVEN 82 AL HLDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGI+VLSLEIGKTL EDVEN Sbjct: 3 ALQHLDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGKTLMEDVEN 62 Query: 83 SFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQ 142 SFFLNVNSQVTTVCQ LAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPM+NLISVGGQ Sbjct: 63 SFFLNVNSQVTTVCQALAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMINLISVGGQ 122 Query: 143 HQGVFGLPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIREDIYRNHSIFL 202 HQGVFGLPRCPGESSHICDFIRKTLNAGAY+K +QERLVQAEYWHDPI+ED+YRNHSIFL Sbjct: 123 HQGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQERLVQAEYWHDPIKEDVYRNHSIFL 182 Query: 203 ADINQERGVNESYKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQEST 262 ADINQERG+NESYKKNLMALKKFVMVKFLND+IVDPVDSEWFGFYRSGQAKETIPLQE++ Sbjct: 183 ADINQERGINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKETIPLQETS 242 Query: 263 LYTQDRLGLKAMDKAGQLVFLALEGDHLQLSEEWFYAHIIPFL 305 LYTQDRLGLK MD AGQLVFLA EGDHLQLSEEWFYAHIIPFL Sbjct: 243 LYTQDRLGLKEMDNAGQLVFLATEGDHLQLSEEWFYAHIIPFL 285 >1EXW-A nrPDB Length = 279 Score = 511 bits (1317), Expect = e-145, Method: Composition-based stats. Identities = 279/279 (100%), Positives = 279/279 (100%) Query: 28 DPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLN 87 DPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLN Sbjct: 1 DPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLN 60 Query: 88 VNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVF 147 VNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVF Sbjct: 61 VNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVF 120 Query: 148 GLPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIREDIYRNHSIFLADINQ 207 GLPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIREDIYRNHSIFLADINQ Sbjct: 121 GLPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIREDIYRNHSIFLADINQ 180 Query: 208 ERGVNESYKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQD 267 ERGVNESYKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQD Sbjct: 181 ERGVNESYKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQD 240 Query: 268 RLGLKAMDKAGQLVFLALEGDHLQLSEEWFYAHIIPFLE 306 RLGLKAMDKAGQLVFLALEGDHLQLSEEWFYAHIIPFLE Sbjct: 241 RLGLKAMDKAGQLVFLALEGDHLQLSEEWFYAHIIPFLE 279 >1PJA-A nrPDB Length = 302 Score = 356 bits (914), Expect = 6e-99, Method: Composition-based stats. Identities = 69/260 (26%), Positives = 119/260 (45%), Gaps = 23/260 (8%) Query: 34 PLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQVT 93 P+++ HG+ DS S + + + + PG V L++ RE + + V Sbjct: 38 PVIVVHGLFDSS---YSFRHLLEYINETHPGTVVTVLDLFDG-RESLR-PLWEQVQGFRE 92 Query: 94 TVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVFGLPRCP 153 V I+AK P QG + + +SQGG RA+ + + IS+ G +G Sbjct: 93 AVVPIMAKAP---QGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYG----- 144 Query: 154 GESSHICDFIRKTLNAGAYNKAIQ---ERLVQAEYWHDPIREDIYRNHSIFLADINQERG 210 ++ ++ ++ + Y + YWHDP +D+Y N S FLA IN ER Sbjct: 145 -DTDYLKWLFPTSMRSNLYRICYSPWGQEFSICNYWHDPHHDDLYLNASSFLALINGERD 203 Query: 211 VNES--YKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETI-PLQESTLYTQD 267 + ++KN + + V++ +D ++ P S +FGFY A ET+ ++E +Y +D Sbjct: 204 HPNATVWRKNFLRVGHLVLIGGPDDGVITPWQSSFFGFY---DANETVLEMEEQLVYLRD 260 Query: 268 RLGLKAMDKAGQLVFLALEG 287 GLK + G +V + G Sbjct: 261 SFGLKTLLARGAIVRCPMAG 280 >6CL4-A nrPDB Length = 313 Score = 34.3 bits (77), Expect = 0.069, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 25/141 (17%) Query: 33 LPLVIWHGM--GDSCCNPLS-MGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVN 89 P+V+ HG+ D IK+ +EK +++ +L + ++ + Sbjct: 28 FPIVLVHGLLGFDKIGGIYPYFYGIKEALEKAGAKVYIATLSALNS--NELRG---EQLL 82 Query: 90 SQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVFGL 149 V V + N +G SQG R VA P + ++ SV G + G Sbjct: 83 EFVRKV-----QAETGAAKVNLIGHSQGPLACRYVAATHPEL-IASVTSVNGVNHG---- 132 Query: 150 PRCPGESSHICDFIRKTLNAG 170 S + D +R L G Sbjct: 133 -------SEVADLVRLALTPG 146 >4GW3-A nrPDB Length = 307 Score = 32.3 bits (72), Expect = 0.23, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 24/152 (15%) Query: 34 PLVIWHGM--GDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQ 91 P+V+ HG+ + I + + + SL + E + V + Sbjct: 26 PIVLVHGLAGFNEIVGFPYFYGIADALRQDGHQVFTASLSAFNS-NEVRGKQLWQFVQTL 84 Query: 92 VTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVFGLPR 151 + + N +G SQG R VA P + ++ S+ G + G Sbjct: 85 LQET---------QAKKVNFIGHSQGPLACRYVAANYPD-SVASVTSINGVNHG------ 128 Query: 152 CPGESSHICDFIRKTLNAGAYNKAIQERLVQA 183 S I D R+ + + + I E+++ A Sbjct: 129 -----SEIADLYRRIMRKDSIPEYIVEKVLNA 155 >4EQ4-A nrPDB Length = 581 Score = 31.6 bits (70), Expect = 0.44, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 6/95 (6%) Query: 61 KIPGIHVLSLEIGKTLREDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGG-- 118 PG +V+ LE+ E+ E + F ++T C ++ + L Y F G Sbjct: 469 TFPGHYVVYLEVDTKEGEEKETAQFELDEEALSTCCLVMEES--LDNVYKRCRFKDGSIG 526 Query: 119 -QFLRAVAQRCPSPPMVNLISVGGQHQGVFGLPRC 152 +R V Q M IS G G + PRC Sbjct: 527 PLEIRVVRQGTFDSLMDFFISQGAS-TGQYKTPRC 560 >5ZWM-4 nrPDB Length = 213 Score = 31.6 bits (70), Expect = 0.45, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 219 LMALKKFVMVKFLNDTIVDPVDS-EWFGFYRSGQAKETIPLQESTLYTQDRL 269 + + + +K+ D ++ + FY G A+ I + +T+ DRL Sbjct: 29 FIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKIMNNTVRLYDRL 80 >2IPI-A nrPDB Length = 521 Score = 31.2 bits (69), Expect = 0.54, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 61/167 (36%), Gaps = 17/167 (10%) Query: 38 WHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTL--REDVENSFFLNVNSQVTTV 95 WH + P + + + G +L ++I L E + N F VN + T V Sbjct: 275 WHQSNSAAGTPYASMHSVFYLNSRAAGQILLDIQIDGGLDGAEALLNDFVAAVN-EGTGV 333 Query: 96 CQILAKDPK------LQQGYNAMGFSQ---GGQFLRAVAQRCPSPPMVNLISVGGQHQGV 146 + + + L ++ GF + G +LR + + +S Q G Sbjct: 334 EPAVQRSTEPWLRATLANKFDTGGFDRTKSKGAYLRKPWTAAQAATLYRHLSADSQVWGE 393 Query: 147 FGLPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIRED 193 L G+ + + +T A A +I + + A W DP +D Sbjct: 394 VSLYSYGGKVNSV----PETATATAQRDSIIKVWMSAT-WMDPAHDD 435 >6CC4-A nrPDB Length = 614 Score = 30.0 bits (66), Expect = 1.3, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Query: 8 WLLALAFLLGSCASLALGHLDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHV 67 W L L FLL +++ALG L P + L +G + ++ A+ I I V Sbjct: 412 WGLRLCFLLALPSAVALGILSGPLTVSL-FQYGKFTAFDALMTQRALIAYSVGLIGLIVV 470 Query: 68 LSLEIGKTLREDVENS 83 L G R+D++ Sbjct: 471 KVLAPGFYSRQDIKTP 486 >6B4I-E nrPDB Length = 430 Score = 29.6 bits (65), Expect = 1.7, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%) Query: 52 GAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNA 111 A + ++ K I V + + L+ D + + +V S L P+L QG A Sbjct: 7 RAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLY-SVKSFEE-----LRLKPQLLQGVYA 60 Query: 112 MGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQG 145 MGF++ + + P NLI+ G Sbjct: 61 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTG 94 >3FMO-B nrPDB Length = 300 Score = 29.6 bits (65), Expect = 1.7, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%) Query: 52 GAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNA 111 A + ++ K I V + + L+ D + + +V S L P+L QG A Sbjct: 56 RAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLY-SVKSFEE-----LRLKPQLLQGVYA 109 Query: 112 MGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQG 145 MGF++ + + P NLI+ G Sbjct: 110 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTG 143 >2QBY-A nrPDB Length = 386 Score = 29.6 bits (65), Expect = 1.9, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 6/78 (7%) Query: 173 NKAIQERLVQAEYWHD--PIREDIYRNHSIFLADINQERGVNESYKKNLMALKKFVMVKF 230 + I + +Y D P RED R + LA + +E N + L K +VKF Sbjct: 5 SIFINREYLLPDYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKF 64 Query: 231 LNDTIVDPVDSEWFGFYR 248 ++ + ++ G ++ Sbjct: 65 ----VLSKLHKKFLGKFK 78 >4BOG-3 nrPDB Length = 505 Score = 29.3 bits (64), Expect = 2.3, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Query: 5 SCLWLLALAFLLGSCASLALGHLD--PPAPLP 34 +C W+ L F LG+ A GHL+ P P P Sbjct: 466 ACFWIALLLFSLGTLAIFLTGHLNQVPEFPFP 497 >4V8P-BF nrPDB Length = 255 Score = 28.9 bits (63), Expect = 2.6, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 18/152 (11%) Query: 80 VENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISV 139 V ++ + Q + Q L P++ Q + +Q + +A P P Sbjct: 45 VRWPRYITLQRQKRVLLQRLKVPPQIHQFTKTLDKNQSSNLFKLLASYAPEKP------- 97 Query: 140 GGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYNKAI-----QERLVQAEYWHDPIREDI 194 + Q + + + L G + Q +LV + DPI Sbjct: 98 AEKKQRLVAQAEAKKDGKQVETKKPIVLKYGLNHITTLIENKQAKLVVIAHDVDPIE--- 154 Query: 195 YRNHSIFLADINQERGVNESYKKNLMALKKFV 226 IFL + ++ V ++ K AL K V Sbjct: 155 ---LVIFLPQLCRKNDVPFAFVKGKAALGKLV 183 >3LMC-A nrPDB Length = 210 Score = 28.9 bits (63), Expect = 2.6, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 2/66 (3%) Query: 234 TIVDP--VDSEWFGFYRSGQAKETIPLQESTLYTQDRLGLKAMDKAGQLVFLALEGDHLQ 291 IV P + +E++G Y A ++E GL D G +++ D L Sbjct: 118 AIVSPHRLQNEFYGKYADDSALIDRIVKEGAHEIGHLFGLGHCDNPGCIMYCPRNLDELD 177 Query: 292 LSEEWF 297 ++F Sbjct: 178 RKRKYF 183 >3FBY-A nrPDB Length = 551 Score = 28.9 bits (63), Expect = 2.8, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 8/70 (11%) Query: 35 LVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQVTT 94 +V+W M + A+ + PGI + +++ E + N+ + + Sbjct: 403 VVMWKQMEQTYWQANPFRAVAE------PGIQLKAVKSSTGPGEQLRNALWH--TGDTES 454 Query: 95 VCQILAKDPK 104 ++L KDP+ Sbjct: 455 QVRLLWKDPR 464 >1YO7-A nrPDB Length = 120 Score = 28.9 bits (63), Expect = 3.1, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 3/82 (3%) Query: 152 CPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIREDIYRNHSIFLADINQERGV 211 C H + R L + N I E+ E HD +++YR+ QE+ Sbjct: 38 CESLHDHADELYRSCLASFKKNGQIDEQADICESLHD-HADELYRSCLARFGGSKQEKTA 96 Query: 212 NESYKKNLMALKKFVMVKFLND 233 + + + +++ LN+ Sbjct: 97 LNMAR--FIRSQTLTLLEKLNE 116 >1CSN-A nrPDB Length = 298 Score = 28.5 bits (62), Expect = 3.9, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 8/79 (10%) Query: 187 HDPIREDIYRNHSIFLADINQERGVNESYKKNLMALKKFVMVKFLNDTIVDPVD-----S 241 H P RE + + IN G +S + +L AL V + FL ++ P + Sbjct: 169 HIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGH-VFMYFLRGSL--PWQGLKAAT 225 Query: 242 EWFGFYRSGQAKETIPLQE 260 + R G+ K++ PL+E Sbjct: 226 NKQKYERIGEKKQSTPLRE 244 >4ZWN-A nrPDB Length = 334 Score = 28.5 bits (62), Expect = 4.2, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 7/55 (12%) Query: 190 IREDIYRNHSIFLADINQERGVNESYKKNLMALKKFVMVKFLNDTIVDPVDSEWF 244 I + + R ++ + N +KN K +++ +DTI DP SE F Sbjct: 236 IHDFMQRGAKLY-------KNENNYIQKNFAKDKPVIIMHGQDDTINDPKGSEKF 283 >1B85-A nrPDB Length = 351 Score = 28.5 bits (62), Expect = 4.3, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 62/178 (34%), Gaps = 34/178 (19%) Query: 10 LALAFLLGSCASLALGHLDPPAP-LPLVIWHGMGDS----------CCNPLSMGAIKKMV 58 L L F+L + + A+ +DP LP G+ DS P S G + V Sbjct: 174 LELVFMLSAHSVAAVNDVDPTVQGLPFDSTPGIFDSQFFVETQLRGTAFPGSGGNQGE-V 232 Query: 59 EKKIPGIHVLSLE--IGKTLREDVENSFFLNVNS-------QVTTVCQILAKDP------ 103 E +PG + + I + R E F+N S + L +DP Sbjct: 233 ESPLPGEIRIQSDHTIARDSRTACEWQSFVNNQSKLVDDFQFIFLALTQLGQDPNAMTDC 292 Query: 104 -------KLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVFGLPRCPG 154 K G F G+ ++ V Q C P L ++ G V +P PG Sbjct: 293 SDVIPQSKPIPGNLPFSFFPAGKTIKDVEQACAETPFPTLTTLPGPETSVQRIPPPPG 350 >4A27-A nrPDB Length = 349 Score = 27.7 bits (60), Expect = 6.9, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 16/129 (12%) Query: 25 GHLDPPAPLPLV-------IWHGMGDSCCNPLSMGAIKKMVEKKIPGIHV-----LSLEI 72 G++D P PLV I +GDS + V V +I Sbjct: 52 GNIDNPPKTPLVPGFECSGIVEALGDSVKGYEIGDRVMAFVNYNAWAEVVCTPVEFVYKI 111 Query: 73 GKTLREDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPP 132 + +F +N VT +L + L++G + + S GG +AVAQ C + P Sbjct: 112 PDDMSFSEAAAFPMN---FVTAYV-MLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVP 167 Query: 133 MVNLISVGG 141 V + Sbjct: 168 NVTVFGTAS 176 >3OKY-A nrPDB Length = 681 Score = 27.3 bits (59), Expect = 7.5, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 230 FLNDTIVDPVDSEWFGFYRSGQAKET 255 D V P+D +WFG ++KET Sbjct: 586 GPKDVPVIPLDQDWFGLELQLRSKET 611 >3S61-A nrPDB Length = 463 Score = 27.3 bits (59), Expect = 7.9, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 6/82 (7%) Query: 200 IFLADINQERGVNESYK-KNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPL 258 FL D+ R Y N + K +V F+N P E+ + R + Sbjct: 86 SFLKDLVSLRNPTSPYSFVNYLH-KHDRLVDFINLGTFYPCRMEFNDYLRWVASH----F 140 Query: 259 QESTLYTQDRLGLKAMDKAGQL 280 QE + Y ++ L ++ M AGQ+ Sbjct: 141 QEQSRYGEEVLRIEPMLSAGQV 162 >5FI5-A nrPDB Length = 357 Score = 27.3 bits (59), Expect = 8.7, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 5/80 (6%) Query: 9 LLALAFLLGSCASLALGHLDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVE-----KKIP 63 LLAL LG L + P P ++ G + SM I++M+E + Sbjct: 261 LLALLKPLGKLIILGAPEMPFEVPAPSLLMGGKVMAASTAGSMKEIQEMIEFAAEHNIVA 320 Query: 64 GIHVLSLEIGKTLREDVENS 83 + V+S++ T E ++NS Sbjct: 321 DVEVISIDYVNTAMERLDNS 340 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.314 0.134 0.392 Lambda K H 0.267 0.0412 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,006,540 Number of Sequences: 36641 Number of extensions: 466360 Number of successful extensions: 1212 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 23 Number of HSP's that attempted gapping in prelim test: 1193 Number of HSP's gapped (non-prelim): 34 length of query: 306 length of database: 10,336,785 effective HSP length: 97 effective length of query: 209 effective length of database: 6,782,608 effective search space: 1417565072 effective search space used: 1417565072 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 59 (27.3 bits)